RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12687
(143 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 90.7 bits (225), Expect = 3e-22
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 77 MSNIWFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIFS-SPDIQAQMPEEGRR 131
+ ++K F++ W+++L ++ ++D W+ VQ+ W+YLE IFS S DI +P E R
Sbjct: 213 KMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTR 272
Query: 132 FSAMDK 137
F +++
Sbjct: 273 FKSINS 278
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 88.7 bits (220), Expect = 1e-21
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 77 MSNIWFKNFKD----WEEKLMLLQEIIDEWVKVQQTWMYLEPIF-SSPDIQAQMPEEGRR 131
++ ++K F+ E KL L EI WV+VQ W+ L I + DIQ +P E +
Sbjct: 272 KASNYYKIFEQDCLDLESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSK 331
Query: 132 FSAMDK 137
F ++
Sbjct: 332 FKSLTS 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.038
Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 37/168 (22%)
Query: 4 NEVKDEYMSSIKKAVVDFAIHDP-------------REPQLSIMEKEQVPSLNP-----M 45
+V+D S + K +D I Q +++K L M
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 46 LEMGSEFKDTFDQNKKKLD--NSLFTIHPVLSEMSNIW-FKNFKDWEEKLMLLQEIIDEW 102
+ +E + + ++ + L+ + V ++ N+ + + + L+ L+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRP--AKN 152
Query: 103 VKVQ------QTWMYLEPIFSSPDIQAQMPEE------GRRFSAMDKL 138
V + +TW+ L+ + S +Q +M + S L
Sbjct: 153 VLIDGVLGSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Score = 27.5 bits (60), Expect = 1.9
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 23/103 (22%)
Query: 2 LLNEVKDEYMSSIKKAVVDFAIHDPREPQL--SIMEKEQVPSLNPMLEMGSEFKDTFDQN 59
L+ + E SI ++ + E L SI++ +P + D+ D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP----------KTFDSDDLI 465
Query: 60 KKKLDNSLFT-I--HPVLSEMS------NIWFKNFKDW-EEKL 92
LD ++ I H E + F +F + E+K+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKI 507
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.75
Identities = 24/168 (14%), Positives = 42/168 (25%), Gaps = 69/168 (41%)
Query: 1 MLLNEVKDEYMSSIKKAVVDFAIHDPREPQLSI------------------------MEK 36
ML + + ++ V H P Q+ I + K
Sbjct: 338 MLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 37 EQVPSLNPMLEMGSE-FKDTFDQNKKKLDNSLFTI----H-PVLSE----------MSNI 80
+ PS G + + F + K K N + H +L +N+
Sbjct: 396 AKAPS-------GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 81 WFK---------NFKDW----EEKLMLLQEIIDE-------WVKVQQT 108
F + D + + I+D W Q
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Score = 26.2 bits (57), Expect = 6.2
Identities = 21/108 (19%), Positives = 27/108 (25%), Gaps = 44/108 (40%)
Query: 2 LLNEVKDEYMSSIKKAVVDFAIHDPREPQLSIMEKEQVPSLNPMLEMGSEFKDTFD-QNK 60
LL D + K V F D + P V DTFD +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIP---------V-------------YDTFDGSDL 468
Query: 61 KKLDNSL-------FTIHPVLSEMSNIWFKNFKDWEEKLML-LQEIID 100
+ L S+ PV WE I+D
Sbjct: 469 RVLSGSISERIVDCIIRLPV-------------KWETTTQFKATHILD 503
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.95
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 58 QNKKKLDNSLFTIH-----PVLS 75
Q KKL SL ++ P L+
Sbjct: 20 QALKKLQASL-KLYADDSAPALA 41
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 27.8 bits (62), Expect = 1.3
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 44 PMLEMGSEFKDTFDQNKKKLDNSLFTIHPVLSEMSNIWFKNFKDWEEKLMLLQEIIDEWV 103
P G E + K +D S S WF N D+ + +
Sbjct: 680 PFFHAGDEILRS-----KSIDRD--------SYNSGDWF-NKLDFTYETNNWGVGLPPSE 725
Query: 104 KVQQTWMYLEPIFSSPDIQAQMPEEGRRFSAMDKL 138
K + W ++P +P + + +
Sbjct: 726 KNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDI 760
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 25.3 bits (56), Expect = 8.3
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 52 FKDTFDQNKKKLDNSLFTIHPVLSEMSNIW 81
+ D ++ + N T+ + S W
Sbjct: 162 YIDELKSLERSMRN--LTVKACVWHPSGDW 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.394
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,215,344
Number of extensions: 119428
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 22
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)