RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12687
         (143 letters)



>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia
          coli [TaxId: 562]}
          Length = 149

 Score = 25.5 bits (56), Expect = 1.7
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 63 LDNSLFTIHPVLSEMS--NIW--FKNFKDWEEKLMLLQEI 98
          + N  F  HP  + ++   +   F     WE+K   L  +
Sbjct: 1  MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIML 40


>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
           subunit, C-terminal domain {Pseudomonas fragi [TaxId:
           296]}
          Length = 95

 Score = 24.8 bits (54), Expect = 2.4
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 99  IDEWVKVQQTWMYLEPIFSSPDIQAQMPEEGRRF 132
           + E+V +   +  L  ++       +M + G+ F
Sbjct: 60  VAEFVALADQYAELGALYHPTAKLREMAKNGQSF 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,205
Number of extensions: 25400
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 13
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)