BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12688
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 OS=Bombyx mori GN=FTZ-F1 PE=1 SV=2
Length = 534
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 78/81 (96%)
Query: 118 EHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKT 177
+ DTK+ IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAER+CHIDKT
Sbjct: 77 DQTDTKDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKT 136
Query: 178 QRKRCPFCRFQKCLEVGMKLE 198
QRKRCPFCRFQKCL+VGMKLE
Sbjct: 137 QRKRCPFCRFQKCLDVGMKLE 157
>sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 OS=Drosophila melanogaster
GN=ftz-f1 PE=1 SV=2
Length = 1027
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 79/90 (87%), Gaps = 4/90 (4%)
Query: 114 AATPEHP----DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAE 169
+ATP H D K EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAE
Sbjct: 488 SATPGHGGEVIDFKHLFEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAE 547
Query: 170 RSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
RSCHIDKTQRKRCP+CRFQKCLEVGMKLE
Sbjct: 548 RSCHIDKTQRKRCPYCRFQKCLEVGMKLEA 577
>sp|O00482|NR5A2_HUMAN Nuclear receptor subfamily 5 group A member 2 OS=Homo sapiens
GN=NR5A2 PE=1 SV=2
Length = 541
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 68/75 (90%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E +EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC+ ++C IDKTQRKRCP
Sbjct: 80 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCP 139
Query: 184 FCRFQKCLEVGMKLE 198
+CRFQKCL VGMKLE
Sbjct: 140 YCRFQKCLSVGMKLE 154
>sp|O42101|NR5A2_CHICK Nuclear receptor subfamily 5 group A member 2 OS=Gallus gallus
GN=NR5A2 PE=2 SV=1
Length = 501
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 68/75 (90%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E +EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC+ ++C IDKTQRKRCP
Sbjct: 40 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCP 99
Query: 184 FCRFQKCLEVGMKLE 198
+CRFQKCL VGMKLE
Sbjct: 100 YCRFQKCLSVGMKLE 114
>sp|P45448|NR5A2_MOUSE Nuclear receptor subfamily 5 group A member 2 OS=Mus musculus
GN=Nr5a2 PE=1 SV=3
Length = 560
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 70/75 (93%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E +EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN+K YTC+ ++C IDKTQRKRCP
Sbjct: 101 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCP 160
Query: 184 FCRFQKCLEVGMKLE 198
+CRF+KC++VGMKLE
Sbjct: 161 YCRFKKCIDVGMKLE 175
>sp|Q9QWM1|NR5A2_RAT Nuclear receptor subfamily 5 group A member 2 OS=Rattus norvegicus
GN=Nr5a2 PE=2 SV=1
Length = 560
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 70/75 (93%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E +EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN+K YTC+ ++C IDKTQRKRCP
Sbjct: 101 EDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNQKRYTCIENQNCQIDKTQRKRCP 160
Query: 184 FCRFQKCLEVGMKLE 198
+CRF+KC++VGMKLE
Sbjct: 161 YCRFKKCIDVGMKLE 175
>sp|P33242|STF1_MOUSE Steroidogenic factor 1 OS=Mus musculus GN=Nr5a1 PE=1 SV=3
Length = 462
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 67/75 (89%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLE 198
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLE 81
>sp|P50569|STF1_RAT Steroidogenic factor 1 OS=Rattus norvegicus GN=Nr5a1 PE=2 SV=1
Length = 462
Score = 143 bits (361), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 67/75 (89%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLE 198
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLE 81
>sp|Q04752|STF1_BOVIN Steroidogenic factor 1 OS=Bos taurus GN=NR5A1 PE=1 SV=1
Length = 461
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 67/75 (89%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLE 198
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLE 81
>sp|P79387|STF1_PIG Steroidogenic factor 1 OS=Sus scrofa GN=NR5A1 PE=2 SV=3
Length = 461
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 67/75 (89%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLE 198
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLE 81
>sp|Q13285|STF1_HUMAN Steroidogenic factor 1 OS=Homo sapiens GN=NR5A1 PE=1 SV=2
Length = 461
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 67/76 (88%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLEV 199
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLEA 82
>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 OS=Equus caballus GN=NR5A1 PE=2 SV=1
Length = 461
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 66/75 (88%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC +SC IDKT RKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTLRKRCP 66
Query: 184 FCRFQKCLEVGMKLE 198
FCRFQKCL VGM+LE
Sbjct: 67 FCRFQKCLTVGMRLE 81
>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 OS=Macropus eugenii GN=NR5A1 PE=2 SV=1
Length = 463
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 61/76 (80%), Positives = 67/76 (88%)
Query: 124 EGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCP 183
E ++ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQN K YTC ++C IDKTQRKRCP
Sbjct: 7 EDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQNCKIDKTQRKRCP 66
Query: 184 FCRFQKCLEVGMKLEV 199
+CRFQKCL VGM+LE
Sbjct: 67 YCRFQKCLTVGMRLEA 82
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25 OS=Caenorhabditis
elegans GN=nhr-25 PE=1 SV=1
Length = 572
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 64/71 (90%)
Query: 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRF 187
E+CPVCGD+VSGYHYGLLTCESCKGFFKRTVQNKK Y C AE +CH+D+T RKRCP CRF
Sbjct: 16 EMCPVCGDRVSGYHYGLLTCESCKGFFKRTVQNKKQYQCSAEANCHVDRTCRKRCPSCRF 75
Query: 188 QKCLEVGMKLE 198
QKCL +GMK+E
Sbjct: 76 QKCLTMGMKME 86
>sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta OS=Drosophila melanogaster
GN=Hr39 PE=1 SV=3
Length = 808
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 71/108 (65%), Gaps = 8/108 (7%)
Query: 92 GSTNMDLSSAGISYHPFHTSTIAATPEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCK 151
S+N+D G S HP A+P ++ I CP+CGDK+SG+HYG+ +CESCK
Sbjct: 346 ASSNLDTVGLG-SSHP-------ASPAGISRQQLINSPCPICGDKISGFHYGIFSCESCK 397
Query: 152 GFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
GFFKRTVQN+K Y CV C + + RK+CP CRF+KCL+ GMKLE
Sbjct: 398 GFFKRTVQNRKNYVCVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEA 445
>sp|Q9W539|HR4_DROME Hormone receptor 4 OS=Drosophila melanogaster GN=Hr4 PE=1 SV=4
Length = 1518
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 117 PEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
P P ++ +C +C DK +G HYG++TCE CKGFFKRTVQN++VYTCVA+ +C I K
Sbjct: 908 PHEPTDEDEQPLVCMICEDKATGLHYGIITCEGCKGFFKRTVQNRRVYTCVADGTCEITK 967
Query: 177 TQRKRCPFCRFQKCLEVGMKLEV 199
QR RC +CRF+KC+E GM L+
Sbjct: 968 AQRNRCQYCRFKKCIEQGMVLQA 990
>sp|O76202|USP_CHOFU Protein ultraspiracle homolog OS=Choristoneura fumiferana GN=USP
PE=2 SV=1
Length = 472
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 117 PEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
P HP + G + LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C ER+C IDK
Sbjct: 108 PNHPLS--GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDK 165
Query: 177 TQRKRCPFCRFQKCLEVGMKLEV 199
QR RC +CR+QKCL GMK E
Sbjct: 166 RQRNRCQYCRYQKCLACGMKREA 188
>sp|P54779|USP_MANSE Protein ultraspiracle homolog OS=Manduca sexta GN=USP PE=2 SV=1
Length = 461
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 117 PEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
P HP + G + LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C +R+C IDK
Sbjct: 102 PNHPLS--GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDK 159
Query: 177 TQRKRCPFCRFQKCLEVGMKLE 198
QR RC +CR+QKCL GMK E
Sbjct: 160 RQRNRCQYCRYQKCLACGMKRE 181
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G + +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 130 YPSTSPGSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 189
Query: 177 TQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206
QR RC +CR+QKCL +GMK E + G
Sbjct: 190 RQRNRCQYCRYQKCLAMGMKREAVQEERQG 219
>sp|P22736|NR4A1_HUMAN Nuclear receptor subfamily 4 group A member 1 OS=Homo sapiens
GN=NR4A1 PE=1 SV=1
Length = 598
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 5 SQIHENILDLVQRCKKRKKLKPKTPIQQLLSAATGAQTPQMQHSNNDTQSSQLSPMLGNN 64
SQ +E + ++ K P+ P S TG +P + S SQ + LG
Sbjct: 164 SQTYEGLRAWTEQLPKASG-PPQPPAFFSFSPPTGP-SPSLAQSPLKLFPSQATHQLGEG 221
Query: 65 TSASAGGAGYNFNNMVDNSYLFQSPGGGSTNMDLSSAGISYHPFHTSTIAATPEHPDTKE 124
S S A PG T+ L +GI P TST A +
Sbjct: 222 ESYSMPTA---------------FPGLAPTSPHLEGSGILDTPV-TSTKARS----GAPG 261
Query: 125 GIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPF 184
G E C VCGD S HYG+ TCE CKGFFKRTVQ Y C+A + C +DK +R RC F
Sbjct: 262 GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQF 321
Query: 185 CRFQKCLEVGMKLEV 199
CRFQKCL VGM EV
Sbjct: 322 CRFQKCLAVGMVKEV 336
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLEV 199
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREA 208
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLEV 199
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREA 208
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 107 PFHTSTIAATPEHP--DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVY 164
P + + P HP + + +C +CGD+ SG HYG+ +CE CKGFFKRTV+ Y
Sbjct: 115 PLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTY 174
Query: 165 TCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
TC + C IDK QR RC +CR+QKCL +GMK E
Sbjct: 175 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREA 209
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLE 198
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKRE 207
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLEV 199
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKREA 208
>sp|P12813|NR4A1_MOUSE Nuclear receptor subfamily 4 group A member 1 OS=Mus musculus
GN=Nr4a1 PE=2 SV=1
Length = 601
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 89 PGGGSTNMDLSSAGISYHPFHTSTIAATPEHPDTKEGIEELCPVCGDKVSGYHYGLLTCE 148
PG T+ + ++GI P + +T G E C VCGD S HYG+ TCE
Sbjct: 234 PGLAPTSPNRDTSGILDAP-----VTSTKSRSGASGGSEGRCAVCGDNASCQHYGVRTCE 288
Query: 149 SCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
CKGFFKRTVQ Y C+A + C +DK +R RC FCRFQKCL VGM EV
Sbjct: 289 GCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEV 339
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLE 198
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKRE 207
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 107 PFHTSTIAATPEHP--DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVY 164
P + + P HP + + +C +CGD+ SG HYG+ +CE CKGFFKRTV+ Y
Sbjct: 115 PLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTY 174
Query: 165 TCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
TC + C IDK QR RC +CR+QKCL +GMK E
Sbjct: 175 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREA 209
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 107 PFHTSTIAATPEHP--DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVY 164
P + + P HP + + +C +CGD+ SG HYG+ +CE CKGFFKRTV+ Y
Sbjct: 110 PLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTY 169
Query: 165 TCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
TC + C IDK QR RC +CR+QKCL +GMK E
Sbjct: 170 TCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREA 204
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 119 HPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
+P T G ++ +C +CGD+ SG HYG+ +CE CKGFFKRT++ +YTC + C IDK
Sbjct: 126 YPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDK 185
Query: 177 TQRKRCPFCRFQKCLEVGMKLE 198
QR RC +CR+QKCL +GMK E
Sbjct: 186 RQRNRCQYCRYQKCLVMGMKRE 207
>sp|P20153|USP_DROME Protein ultraspiracle OS=Drosophila melanogaster GN=usp PE=1 SV=1
Length = 508
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 117 PEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDK 176
P HP + G + LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C R+C IDK
Sbjct: 93 PNHPLS--GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDK 150
Query: 177 TQRKRCPFCRFQKCLEVGMKLE 198
QR RC +CR+QKCL GMK E
Sbjct: 151 RQRNRCQYCRYQKCLTCGMKRE 172
>sp|P49869|HR38_DROME Probable nuclear hormone receptor HR38 OS=Drosophila melanogaster
GN=Hr38 PE=1 SV=3
Length = 1073
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 53/72 (73%)
Query: 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRF 187
+LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A+++C +DK +R RC FCRF
Sbjct: 742 QLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRF 801
Query: 188 QKCLEVGMKLEV 199
QKCL VGM EV
Sbjct: 802 QKCLVVGMVKEV 813
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQ 188
+C +CGD+ SG HYG+ +CE CKGFFKRT++ VYTC + C IDK QR RC +CR+Q
Sbjct: 145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQ 204
Query: 189 KCLEVGMKLEV 199
KCL +GMK E
Sbjct: 205 KCLAMGMKREA 215
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
+ LC +CGD+ SG HYG+ +CE CKGFFKRTV+ YTC + C +DK QR RC +CR
Sbjct: 122 KRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCR 181
Query: 187 FQKCLEVGMKLEV 199
+QKCL +GMK EV
Sbjct: 182 YQKCLAMGMKREV 194
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 113 IAATPEHPDTKEG--IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAER 170
I P HP + +C +CGD+ SG HYG+ +CE CKGFFKRTV+ YTC +
Sbjct: 142 ILKVPMHPSGAMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSK 201
Query: 171 SCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
C IDK QR RC +CR+QKCL +GMK E
Sbjct: 202 DCMIDKRQRNRCQYCRYQKCLAMGMKREA 230
>sp|Q4V8R7|GCNFB_DANRE Nuclear receptor subfamily 6 group A member 1-B OS=Danio rerio
GN=nr6a1b PE=2 SV=1
Length = 455
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 57/75 (76%)
Query: 121 DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRK 180
+T +G E C +CGD+ SG HYG+++CE CKGFFKR++ NK++Y C +++C + + QR
Sbjct: 32 ETDDGGERWCLICGDRASGLHYGIISCEGCKGFFKRSICNKRIYRCNRDKNCQMSRKQRN 91
Query: 181 RCPFCRFQKCLEVGM 195
RC +CR QKCL++GM
Sbjct: 92 RCQYCRLQKCLQMGM 106
>sp|P51666|NR4A1_CANFA Nuclear receptor subfamily 4 group A member 1 OS=Canis familiaris
GN=NR4A1 PE=2 SV=1
Length = 598
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 51/75 (68%)
Query: 125 GIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPF 184
G E C VCGD S HYG+ TCE CKGFFKRTVQ Y C+A + C +DK +R RC F
Sbjct: 262 GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQF 321
Query: 185 CRFQKCLEVGMKLEV 199
CRFQKCL VGM EV
Sbjct: 322 CRFQKCLAVGMVKEV 336
>sp|Q0V8F0|NR4A1_BOVIN Nuclear receptor subfamily 4 group A member 1 OS=Bos taurus
GN=NR4A1 PE=2 SV=1
Length = 598
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 51/75 (68%)
Query: 125 GIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPF 184
G E C VCGD S HYG+ TCE CKGFFKRTVQ Y C+A + C +DK +R RC F
Sbjct: 262 GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQF 321
Query: 185 CRFQKCLEVGMKLEV 199
CRFQKCL VGM EV
Sbjct: 322 CRFQKCLAVGMVKEV 336
>sp|P49870|HR38_BOMMO Probable nuclear hormone receptor HR38 (Fragment) OS=Bombyx mori
GN=HR38 PE=2 SV=1
Length = 360
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Query: 99 SSAGISYHPFHTSTIAATPEHPDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTV 158
SS G++ P + A P P +LC VCGD + HYG+ TCE CKGFFKRTV
Sbjct: 3 SSPGVA--PADNTGPRAAPSSP------SQLCAVCGDTAACQHYGVRTCEGCKGFFKRTV 54
Query: 159 QNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEV 199
Q Y C+AE+SC +DK +R RC FC FQKCL VGM EV
Sbjct: 55 QKGSKYVCLAEKSCPVDKRRRNRCQFCWFQKCLAVGMVKEV 95
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 96/191 (50%), Gaps = 30/191 (15%)
Query: 28 TPIQQLLSAATGAQTPQMQHSNNDTQSSQLSPMLGNNTSASAGGAGYNFNNMVDNSYLFQ 87
+P Q++S + ++PQ D Q+ Q L T+ A G+ ++
Sbjct: 5 SPRIQIISTDSAVRSPQRIQIVTDQQTGQ---KLQIVTAVDASGSS-------KQQFILT 54
Query: 88 SP-GGGSTNMDLSSAGISYHP---FHTS-----------TIAATPEHPDTKEGIE----- 127
SP G G+ + L+S S F TS T +A+ E K ++
Sbjct: 55 SPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVV 114
Query: 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRF 187
E C VCGDK SG HYG ++CE CKGFFKR+V+ Y+C + + C I+K R RC FCR
Sbjct: 115 EYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRL 174
Query: 188 QKCLEVGMKLE 198
+KCLE+GMK+E
Sbjct: 175 KKCLEMGMKME 185
>sp|P49700|USP_BOMMO Protein ultraspiracle homolog OS=Bombyx mori GN=USP PE=2 SV=1
Length = 462
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 53/74 (71%)
Query: 125 GIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPF 184
G + LC +CGD+ SG HYG+ +CE CKGFFKRTV+ Y C +++C IDK QR RC +
Sbjct: 109 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDKNCIIDKRQRNRCQY 168
Query: 185 CRFQKCLEVGMKLE 198
CR+QKCL GMK E
Sbjct: 169 CRYQKCLACGMKRE 182
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 51/71 (71%)
Query: 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQ 188
+C +CGD+ SG HYG+ +CE CKGFFKRT++ YTC + C IDK QR RC +CR+Q
Sbjct: 116 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQ 175
Query: 189 KCLEVGMKLEV 199
KCL +GMK E
Sbjct: 176 KCLAMGMKREA 186
>sp|Q07917|NR4A2_RAT Nuclear receptor subfamily 4 group A member 2 OS=Rattus norvegicus
GN=Nr4a2 PE=1 SV=3
Length = 598
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 320 FQKCLAVGMVKEV 332
>sp|Q5R5Y4|NR4A2_PONAB Nuclear receptor subfamily 4 group A member 2 OS=Pongo abelii
GN=NR4A2 PE=2 SV=1
Length = 598
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 320 FQKCLAVGMVKEV 332
>sp|P43354|NR4A2_HUMAN Nuclear receptor subfamily 4 group A member 2 OS=Homo sapiens
GN=NR4A2 PE=1 SV=1
Length = 598
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 320 FQKCLAVGMVKEV 332
>sp|Q06219|NR4A2_MOUSE Nuclear receptor subfamily 4 group A member 2 OS=Mus musculus
GN=Nr4a2 PE=1 SV=1
Length = 598
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 320 FQKCLAVGMVKEV 332
>sp|Q08E53|NR4A2_BOVIN Nuclear receptor subfamily 4 group A member 2 OS=Bos taurus
GN=NR4A2 PE=2 SV=1
Length = 598
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 260 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 319
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 320 FQKCLAVGMVKEV 332
>sp|A4IIG7|NR4A2_XENTR Nuclear receptor subfamily 4 group A member 2 OS=Xenopus tropicalis
GN=nr4a2 PE=2 SV=1
Length = 591
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
E LC VCGD + HYG+ TCE CKGFFKRTVQ Y C+A ++C +DK +R RC +CR
Sbjct: 253 EGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCR 312
Query: 187 FQKCLEVGMKLEV 199
FQKCL VGM EV
Sbjct: 313 FQKCLVVGMVKEV 325
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 30/191 (15%)
Query: 28 TPIQQLLSAATGAQTPQMQHSNNDTQSSQLSPMLGNNTSASAGGAGYNFNNMVDNSYLFQ 87
+P Q++S + +PQ D Q+ Q ++ T+ A G+ ++
Sbjct: 5 SPRIQIISTDSAVASPQRIQIVTDQQTGQKIQIV---TAVDASGSS-------KQQFILT 54
Query: 88 SP-GGGSTNMDLSSAGISYHP---FHTS-----------TIAATPEHPDTKEGIE----- 127
SP G G+ + L+S S F TS T +A+ E K ++
Sbjct: 55 SPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKADVQRPQVV 114
Query: 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRF 187
E C VCGDK SG HYG ++CE CKGFFKR+V+ Y+C + + C I+K R RC FCR
Sbjct: 115 EYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRL 174
Query: 188 QKCLEVGMKLE 198
+KCLE+GMK+E
Sbjct: 175 KKCLEMGMKME 185
>sp|Q9U2R6|NHR91_CAEEL Nuclear hormone receptor family member nhr-91 OS=Caenorhabditis
elegans GN=nhr-91 PE=1 SV=2
Length = 474
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 112 TIAATPEHPDTKEGIEE----LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCV 167
+I TP T + + LC VCGDK +G HYG TCE CKGFFKR+VQNKKVY C
Sbjct: 78 SILGTPTTDSTSNAVSKSSSKLCSVCGDKSTGLHYGAATCEGCKGFFKRSVQNKKVYHCS 137
Query: 168 AERSCHIDKTQRKRCPFCRFQKCLEVGMKLE 198
+ C IDK R RC CRF+KC+ GM E
Sbjct: 138 QDNCCEIDKQNRNRCQSCRFRKCISKGMLTE 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,292,487
Number of Sequences: 539616
Number of extensions: 3532857
Number of successful extensions: 11021
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 10340
Number of HSP's gapped (non-prelim): 580
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)