Query psy12688
Match_columns 222
No_of_seqs 186 out of 1115
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:05:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbb_A HNF-4-alpha, hepatocyte 100.0 2.2E-30 7.6E-35 192.3 6.3 77 129-205 2-78 (78)
2 2ebl_A COUP transcription fact 100.0 5.4E-30 1.8E-34 194.7 7.1 81 127-207 7-87 (89)
3 1hcq_A Protein (estrogen recep 100.0 4.5E-30 1.5E-34 193.2 6.1 79 128-206 5-83 (84)
4 2han_A Protein ultraspiracle; 100.0 4.2E-30 1.4E-34 196.6 5.5 81 127-207 10-90 (93)
5 1dsz_B RXR-alpha, retinoic aci 100.0 4.5E-30 1.5E-34 193.6 5.5 80 127-206 5-84 (85)
6 1dsz_A RAR-alpha, retinoic aci 100.0 6.6E-30 2.3E-34 192.9 5.7 81 126-206 3-83 (86)
7 1cit_A NGFI-B, protein (orphan 100.0 1.4E-29 4.6E-34 192.4 6.5 85 129-213 2-86 (89)
8 1ynw_B Retinoic acid receptor 100.0 2E-29 6.7E-34 194.9 6.2 82 128-209 4-85 (99)
9 4hn5_A Glucocorticoid receptor 100.0 2.5E-29 8.6E-34 199.7 5.9 87 127-213 29-115 (117)
10 3g9m_A Glucocorticoid receptor 100.0 1.8E-29 6.1E-34 191.8 4.4 86 128-213 3-88 (90)
11 1a6y_A Orphan nuclear receptor 100.0 4.3E-29 1.5E-33 191.4 5.1 82 126-207 6-88 (94)
12 2a66_A Orphan nuclear receptor 99.9 7.1E-29 2.4E-33 196.0 5.8 81 127-207 9-89 (113)
13 1lo1_A Steroid hormone recepto 99.9 2.8E-29 9.5E-34 193.8 2.6 82 127-208 4-85 (98)
14 2han_B Ecdysone receptor; tran 99.9 1.4E-28 4.9E-33 195.6 5.7 79 127-205 8-86 (119)
15 1kb2_A Vitamin D3 receptor; VD 99.9 1.4E-28 4.8E-33 193.4 5.3 80 127-206 6-85 (110)
16 2nll_B Protein (thyroid hormon 99.9 2.6E-28 8.9E-33 189.8 5.4 78 128-205 2-81 (103)
17 1r4i_A Androgen receptor; AR, 99.9 4.2E-28 1.4E-32 189.3 5.5 80 127-206 7-86 (105)
18 3dzy_A Retinoic acid receptor 99.9 3.6E-26 1.2E-30 215.7 6.0 82 126-207 136-217 (467)
19 3dzy_D Peroxisome proliferator 99.9 2.4E-25 8.2E-30 207.1 6.8 82 125-208 48-130 (419)
20 2lze_A A primordial catalytic 99.7 7.1E-18 2.4E-22 127.6 1.5 62 138-201 15-76 (87)
21 2lze_A A primordial catalytic 65.0 4.5 0.00016 29.8 2.9 18 125-142 15-32 (87)
22 3dfx_A Trans-acting T-cell-spe 52.9 11 0.00036 26.3 3.0 31 127-157 7-41 (63)
23 2vut_I AREA, nitrogen regulato 48.1 9.8 0.00034 24.5 2.0 29 129-157 3-35 (43)
24 2l43_A N-teminal domain from h 47.1 11 0.00037 27.5 2.3 51 127-188 25-75 (88)
25 1gnf_A Transcription factor GA 41.9 18 0.00063 23.5 2.6 30 128-157 5-38 (46)
26 2pv0_B DNA (cytosine-5)-methyl 40.9 16 0.00054 33.8 2.9 34 126-159 49-85 (386)
27 2ku3_A Bromodomain-containing 37.7 13 0.00043 26.1 1.4 52 127-189 16-67 (71)
28 3j20_P 30S ribosomal protein S 35.0 30 0.001 23.6 2.9 31 121-151 12-43 (56)
29 2crw_A ARF GAP 3, ADP-ribosyla 34.9 17 0.00059 29.2 1.9 32 126-157 28-62 (149)
30 2iqj_A Stromal membrane-associ 34.8 14 0.00049 29.0 1.4 32 126-157 26-60 (134)
31 2crr_A Stromal membrane-associ 34.0 16 0.00056 28.9 1.7 32 126-157 28-62 (141)
32 3dwd_A ADP-ribosylation factor 33.4 19 0.00066 29.0 2.0 31 126-156 37-70 (147)
33 4gat_A Nitrogen regulatory pro 33.3 26 0.00089 24.5 2.4 30 127-156 9-42 (66)
34 2olm_A Nucleoporin-like protei 31.8 16 0.00054 29.0 1.3 31 126-156 24-57 (140)
35 2p57_A GTPase-activating prote 31.7 19 0.00065 28.9 1.7 32 126-157 36-70 (144)
36 2owa_A Arfgap-like finger doma 30.1 18 0.00062 28.7 1.3 31 126-156 35-68 (138)
37 2kae_A GATA-type transcription 28.7 34 0.0012 24.2 2.4 30 127-157 8-43 (71)
38 3o47_A ADP-ribosylation factor 25.9 30 0.001 30.0 2.1 32 126-157 36-70 (329)
39 3sub_A ADP-ribosylation factor 25.3 25 0.00085 28.9 1.3 31 126-156 21-54 (163)
40 2lbm_A Transcriptional regulat 24.0 31 0.001 27.5 1.6 31 127-157 14-53 (142)
41 3a1b_A DNA (cytosine-5)-methyl 23.6 43 0.0015 27.3 2.4 71 126-198 35-115 (159)
42 3iz6_N 40S ribosomal protein S 23.1 50 0.0017 22.4 2.3 26 125-150 16-42 (56)
43 2xzm_N RPS29E; ribosome, trans 21.8 57 0.0019 22.0 2.4 27 125-151 15-42 (55)
44 3u5c_d S36, YS29, 40S ribosoma 20.1 61 0.0021 22.0 2.3 27 125-151 16-43 (56)
No 1
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=192.33 Aligned_cols=77 Identities=43% Similarity=1.106 Sum_probs=73.3
Q ss_pred cccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCC
Q psy12688 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTH 205 (222)
Q Consensus 129 ~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~ 205 (222)
+|.||||+++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++||.+||
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.96 E-value=5.4e-30 Score=194.68 Aligned_cols=81 Identities=49% Similarity=1.028 Sum_probs=77.0
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
...|.||||+++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++||.+|+.
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 86 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGP 86 (89)
T ss_dssp SCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCC
T ss_pred CCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q psy12688 207 V 207 (222)
Q Consensus 207 ~ 207 (222)
.
T Consensus 87 ~ 87 (89)
T 2ebl_A 87 S 87 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.96 E-value=4.5e-30 Score=193.17 Aligned_cols=79 Identities=48% Similarity=1.019 Sum_probs=68.2
Q ss_pred ccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 128 ~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
.+|.||||+++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++||.+|+|
T Consensus 5 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~g 83 (84)
T 1hcq_A 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRG 83 (84)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC---------
T ss_pred CcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.96 E-value=4.2e-30 Score=196.61 Aligned_cols=81 Identities=53% Similarity=1.178 Sum_probs=75.4
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
..+|.||||.++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|+.+|+.
T Consensus 10 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 89 (93)
T 2han_A 10 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQG 89 (93)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC--
T ss_pred CCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q psy12688 207 V 207 (222)
Q Consensus 207 ~ 207 (222)
.
T Consensus 90 ~ 90 (93)
T 2han_A 90 I 90 (93)
T ss_dssp -
T ss_pred c
Confidence 4
No 5
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.96 E-value=4.5e-30 Score=193.55 Aligned_cols=80 Identities=51% Similarity=1.143 Sum_probs=76.5
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
..+|.||||+++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++||.+|+.
T Consensus 5 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp CEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred CCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.96 E-value=6.6e-30 Score=192.92 Aligned_cols=81 Identities=51% Similarity=1.077 Sum_probs=73.5
Q ss_pred CCccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCC
Q psy12688 126 IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTH 205 (222)
Q Consensus 126 ~~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~ 205 (222)
+..+|.||||+++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++||.+|+
T Consensus 3 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (86)
T 1dsz_A 3 IYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 82 (86)
T ss_dssp ---CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC--
T ss_pred CCCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy12688 206 G 206 (222)
Q Consensus 206 g 206 (222)
.
T Consensus 83 ~ 83 (86)
T 1dsz_A 83 K 83 (86)
T ss_dssp -
T ss_pred c
Confidence 5
No 7
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.96 E-value=1.4e-29 Score=192.40 Aligned_cols=85 Identities=53% Similarity=0.995 Sum_probs=77.6
Q ss_pred cccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCCcc
Q psy12688 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHGVV 208 (222)
Q Consensus 129 ~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g~~ 208 (222)
.|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++||.++....
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~~ 81 (89)
T 1cit_A 2 RCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR 81 (89)
T ss_dssp CCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTC
T ss_pred CCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998765544
Q ss_pred eecCC
Q psy12688 209 VIWSP 213 (222)
Q Consensus 209 ~~~~p 213 (222)
--..|
T Consensus 82 r~r~p 86 (89)
T 1cit_A 82 RGRLP 86 (89)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 33333
No 8
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.95 E-value=2e-29 Score=194.95 Aligned_cols=82 Identities=50% Similarity=1.079 Sum_probs=71.6
Q ss_pred ccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCCc
Q psy12688 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHGV 207 (222)
Q Consensus 128 ~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g~ 207 (222)
.+|.||||+++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|+.+|+..
T Consensus 4 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 83 (99)
T 1ynw_B 4 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 83 (99)
T ss_dssp -CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC------
T ss_pred CCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ce
Q psy12688 208 VV 209 (222)
Q Consensus 208 ~~ 209 (222)
..
T Consensus 84 ~~ 85 (99)
T 1ynw_B 84 KD 85 (99)
T ss_dssp --
T ss_pred cc
Confidence 43
No 9
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.95 E-value=2.5e-29 Score=199.65 Aligned_cols=87 Identities=46% Similarity=0.938 Sum_probs=70.3
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
.++|.||||+++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|..|++|||+|||++||++++|+.+++-
T Consensus 29 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~ 108 (117)
T 4hn5_A 29 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKI 108 (117)
T ss_dssp -CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC-------
T ss_pred CCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cceecCC
Q psy12688 207 VVVIWSP 213 (222)
Q Consensus 207 ~~~~~~p 213 (222)
....-+|
T Consensus 109 k~~~~~~ 115 (117)
T 4hn5_A 109 KGIQQAT 115 (117)
T ss_dssp -------
T ss_pred cccCCCC
Confidence 5544444
No 10
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.95 E-value=1.8e-29 Score=191.77 Aligned_cols=86 Identities=45% Similarity=0.943 Sum_probs=74.9
Q ss_pred ccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCCc
Q psy12688 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHGV 207 (222)
Q Consensus 128 ~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g~ 207 (222)
.+|.||||+++|+||||.+|+||++||||++..+..|.|..+++|.|++..|..|++|||+|||++||++++|+.+++..
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~ 82 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 82 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC---
T ss_pred CcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceecCC
Q psy12688 208 VVIWSP 213 (222)
Q Consensus 208 ~~~~~p 213 (222)
....++
T Consensus 83 ~~~~~~ 88 (90)
T 3g9m_A 83 GIQQAT 88 (90)
T ss_dssp ------
T ss_pred cccCCC
Confidence 554443
No 11
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.95 E-value=4.3e-29 Score=191.35 Aligned_cols=82 Identities=45% Similarity=1.006 Sum_probs=74.2
Q ss_pred CCccccccCCCCcceeeccccchhhhHHHHhHhhcCcee-ccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCC
Q psy12688 126 IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVY-TCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQST 204 (222)
Q Consensus 126 ~~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~-~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r 204 (222)
...+|.||||.++|+||||.+|+||++||||++..+..| .|..+++|.|++..|+.|++|||+|||++||++++||.+|
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 85 (94)
T 1a6y_A 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 85 (94)
T ss_dssp --CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC
T ss_pred CCCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCc
Confidence 446799999999999999999999999999999998888 5999999999999999999999999999999999999988
Q ss_pred CCc
Q psy12688 205 HGV 207 (222)
Q Consensus 205 ~g~ 207 (222)
+..
T Consensus 86 ~~~ 88 (94)
T 1a6y_A 86 IPK 88 (94)
T ss_dssp ---
T ss_pred CcC
Confidence 654
No 12
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.95 E-value=7.1e-29 Score=195.95 Aligned_cols=81 Identities=77% Similarity=1.412 Sum_probs=76.5
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
..+|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|..|++|||+|||++||++++|+.+|+.
T Consensus 9 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~ 88 (113)
T 2a66_A 9 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMR 88 (113)
T ss_dssp -CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCC
T ss_pred CCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhcccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q psy12688 207 V 207 (222)
Q Consensus 207 ~ 207 (222)
.
T Consensus 89 ~ 89 (113)
T 2a66_A 89 G 89 (113)
T ss_dssp S
T ss_pred C
Confidence 3
No 13
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.95 E-value=2.8e-29 Score=193.76 Aligned_cols=82 Identities=49% Similarity=0.915 Sum_probs=76.9
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
..+|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|..|++|||+|||++||++++|+.+|+.
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 83 (98)
T 1lo1_A 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVR 83 (98)
T ss_dssp CCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCT
T ss_pred CCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeeccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc
Q psy12688 207 VV 208 (222)
Q Consensus 207 ~~ 208 (222)
..
T Consensus 84 ~~ 85 (98)
T 1lo1_A 84 GG 85 (98)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 14
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.95 E-value=1.4e-28 Score=195.62 Aligned_cols=79 Identities=52% Similarity=1.100 Sum_probs=74.9
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTH 205 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~ 205 (222)
...|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|+.+++
T Consensus 8 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~ 86 (119)
T 2han_B 8 EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQ 86 (119)
T ss_dssp SCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSH
T ss_pred CCcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhh
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999997654
No 15
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.95 E-value=1.4e-28 Score=193.37 Aligned_cols=80 Identities=38% Similarity=0.985 Sum_probs=74.8
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
...|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|..|++|||+|||++||++++|+.+++.
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~ 85 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEV 85 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHH
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999876643
No 16
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.94 E-value=2.6e-28 Score=189.78 Aligned_cols=78 Identities=51% Similarity=1.096 Sum_probs=73.6
Q ss_pred ccccccCCCCcceeeccccchhhhHHHHhHhhcCc--eeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCC
Q psy12688 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKK--VYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTH 205 (222)
Q Consensus 128 ~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~--~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~ 205 (222)
++|.||||.++|+||||.+|+||++||||++..+. .|.|...++|.|++..|..|++|||+|||++||++++|+.++.
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~ 81 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 81 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhh
Confidence 46999999999999999999999999999999875 7999999999999999999999999999999999999998764
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.94 E-value=4.2e-28 Score=189.29 Aligned_cols=80 Identities=49% Similarity=1.021 Sum_probs=70.5
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCCC
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTHG 206 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~g 206 (222)
...|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++++..+.+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~~ 86 (105)
T 1r4i_A 7 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLG 86 (105)
T ss_dssp CCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-------
T ss_pred CCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhcccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999876643
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.92 E-value=3.6e-26 Score=215.66 Aligned_cols=82 Identities=50% Similarity=1.100 Sum_probs=77.4
Q ss_pred CCccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccccCCC
Q psy12688 126 IEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQSTH 205 (222)
Q Consensus 126 ~~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~r~ 205 (222)
..+.|.||||+++|+||||.+|+|||+||||++.++..|.|+.+++|.+++..|++|++|||+||+++||++++||.+|+
T Consensus 136 ~~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~ 215 (467)
T 3dzy_A 136 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 215 (467)
T ss_dssp -CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSC
T ss_pred CCCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhcccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Cc
Q psy12688 206 GV 207 (222)
Q Consensus 206 g~ 207 (222)
..
T Consensus 216 ~~ 217 (467)
T 3dzy_A 216 RG 217 (467)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.91 E-value=2.4e-25 Score=207.10 Aligned_cols=82 Identities=46% Similarity=1.010 Sum_probs=73.7
Q ss_pred CCCccccccCCCCcceeeccccchhhhHHHHhHhhcCceec-cccCcccccCCCCCCCCcchHhHHHHHhcCCccccccC
Q psy12688 125 GIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYT-CVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSSQS 203 (222)
Q Consensus 125 ~~~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~-C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr~~ 203 (222)
.....|.||||+++|+||||.+|+|||+||||++..+..|. | .++|.+++..|+.|++|||+||+++||++++||.+
T Consensus 48 ~~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~ 125 (419)
T 3dzy_D 48 LMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFG 125 (419)
T ss_dssp --CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCS
T ss_pred CCCCcCeECCCcCCCCccCcccchhhhHHHccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchhheecc
Confidence 44567999999999999999999999999999999888885 6 46899999999999999999999999999999998
Q ss_pred CCCcc
Q psy12688 204 THGVV 208 (222)
Q Consensus 204 r~g~~ 208 (222)
|....
T Consensus 126 R~~~~ 130 (419)
T 3dzy_D 126 RMPQA 130 (419)
T ss_dssp CCTTT
T ss_pred ccccc
Confidence 87643
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.67 E-value=7.1e-18 Score=127.58 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=51.1
Q ss_pred cceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHHHHHhcCCccccc
Q psy12688 138 SGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQKCLEVGMKLEVSS 201 (222)
Q Consensus 138 sg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM~~eaVr 201 (222)
.+.||+++ |.+|++||||++ .+..|.|+.+++|.|++..|+.|++|||+|||+|||....+.
T Consensus 15 ~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~ 76 (87)
T 2lze_A 15 GGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGG 76 (87)
T ss_dssp CCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCC
T ss_pred CCCEEccC-CCCccceECccc-CCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCc
Confidence 34455543 555788999985 567899999999999999999999999999999999887543
No 21
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=65.03 E-value=4.5 Score=29.84 Aligned_cols=18 Identities=28% Similarity=0.909 Sum_probs=14.5
Q ss_pred CCCccccccCCCCcceee
Q psy12688 125 GIEELCPVCGDKVSGYHY 142 (222)
Q Consensus 125 ~~~~~C~VCGd~asg~HY 142 (222)
.....|.||||.+++|+.
T Consensus 15 ~g~h~c~vCgd~asfFRR 32 (87)
T 2lze_A 15 GGKHICAICGNNAEDYKH 32 (87)
T ss_dssp CCSSSCSSSSSSSSSCTT
T ss_pred CCCEEccCCCCccceECc
Confidence 445679999999998765
No 22
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=52.95 E-value=11 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=22.9
Q ss_pred CccccccCCCCcc----eeeccccchhhhHHHHhH
Q psy12688 127 EELCPVCGDKVSG----YHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 127 ~~~C~VCGd~asg----~HYGV~sCeaCk~FFRRt 157 (222)
...|..|+...+- -.+|...|+||..+|+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 4469999976542 246778999999999754
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=48.13 E-value=9.8 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=20.7
Q ss_pred cccccCCCCcc----eeeccccchhhhHHHHhH
Q psy12688 129 LCPVCGDKVSG----YHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 129 ~C~VCGd~asg----~HYGV~sCeaCk~FFRRt 157 (222)
.|..|+...+- -..|...|+||..+|+..
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 48888865432 235777899999998753
No 24
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=47.13 E-value=11 Score=27.46 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=32.0
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhH
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQ 188 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~ 188 (222)
...|.||++..+...-..+.|.+|...|-- .|-.... .....+.|+.|+..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~--------~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQ--------ECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCH--------HHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhc--------ccCCCCc---cCCCceECccccCc
Confidence 456999998765444567789999754422 2422221 23457889888764
No 25
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=41.86 E-value=18 Score=23.53 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=20.6
Q ss_pred ccccccCCCCcc----eeeccccchhhhHHHHhH
Q psy12688 128 ELCPVCGDKVSG----YHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 128 ~~C~VCGd~asg----~HYGV~sCeaCk~FFRRt 157 (222)
..|..|+...+- -..|...|++|..+|+..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 358888865432 124667899999998753
No 26
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.90 E-value=16 Score=33.82 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCccccccCCCC-cce--eeccccchhhhHHHHhHhh
Q psy12688 126 IEELCPVCGDKV-SGY--HYGLLTCESCKGFFKRTVQ 159 (222)
Q Consensus 126 ~~~~C~VCGd~a-sg~--HYGV~sCeaCk~FFRRtv~ 159 (222)
++..|..||... ... .|.+..|..|+.||....-
T Consensus 49 ~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f 85 (386)
T 2pv0_B 49 IEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALF 85 (386)
T ss_dssp GGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTT
T ss_pred ccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCc
Confidence 456899999764 233 4999999999999987643
No 27
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=37.67 E-value=13 Score=26.13 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=31.8
Q ss_pred CccccccCCCCcceeeccccchhhhHHHHhHhhcCceeccccCcccccCCCCCCCCcchHhHH
Q psy12688 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQK 189 (222)
Q Consensus 127 ~~~C~VCGd~asg~HYGV~sCeaCk~FFRRtv~~~~~~~C~~~~~C~i~~~~R~~Cr~CRl~K 189 (222)
...|.||++..+...-..+.|.+|...|-- .|-.... .......|..|+..+
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~--------~Cl~~~~---vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQ--------ECYGVPY---IPEGQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEH--------HHHTCSS---CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCcccc--------ccCCCCc---CCCCCcCCccCcCcC
Confidence 456999998764444456789999744421 2422211 233567899887654
No 28
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.95 E-value=30 Score=23.58 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCccCCCccccccCCCCcce-eeccccchhhh
Q psy12688 121 DTKEGIEELCPVCGDKVSGY-HYGLLTCESCK 151 (222)
Q Consensus 121 ~~~~~~~~~C~VCGd~asg~-HYGV~sCeaCk 151 (222)
.........|.|||.+.--+ .||...|.-|-
T Consensus 12 r~~grg~~rC~vcGr~~g~iRkfGL~~cR~cf 43 (56)
T 3j20_P 12 RKFGKGARRCIRCGQYGPIIRIQGLMLCRHCF 43 (56)
T ss_dssp CSSSSTTCCCSSSCCSSSCCCTTTCCCCHHHH
T ss_pred cccCCCceEeecCCCCcccccccCChHHHHHH
Confidence 33334456799999876443 69998898773
No 29
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.90 E-value=17 Score=29.23 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=25.8
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHhH
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRRt 157 (222)
.+..|.-||.+.- ...||++.|-.|.+..|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 4678999997653 3589999999999998753
No 30
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=34.78 E-value=14 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.669 Sum_probs=25.8
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHhH
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRRt 157 (222)
.+..|.-||...- ...||++.|-.|.+..|..
T Consensus 26 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 26 DNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 4667999997653 3589999999999998753
No 31
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.98 E-value=16 Score=28.94 Aligned_cols=32 Identities=22% Similarity=0.642 Sum_probs=25.5
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHhH
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRRt 157 (222)
.+..|.-||...- ...||++.|-.|.+..|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 28 DNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred cCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 3567999997643 3589999999999998753
No 32
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=33.37 E-value=19 Score=29.02 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=25.5
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHh
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 156 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRR 156 (222)
.+..|.-||.+.- ...||++.|..|.+..|.
T Consensus 37 ~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 4667999998654 358999999999999874
No 33
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=33.30 E-value=26 Score=24.47 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=21.9
Q ss_pred CccccccCCCCcc----eeeccccchhhhHHHHh
Q psy12688 127 EELCPVCGDKVSG----YHYGLLTCESCKGFFKR 156 (222)
Q Consensus 127 ~~~C~VCGd~asg----~HYGV~sCeaCk~FFRR 156 (222)
...|..|+...+- -..|...|++|..+|+.
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 4569999976542 23566789999999874
No 34
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=31.85 E-value=16 Score=28.99 Aligned_cols=31 Identities=23% Similarity=0.561 Sum_probs=25.0
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHh
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 156 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRR 156 (222)
.+..|.-||...- ...||++.|-.|.+..|.
T Consensus 24 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CCCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 3567999997653 358999999999999764
No 35
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=31.72 E-value=19 Score=28.91 Aligned_cols=32 Identities=28% Similarity=0.722 Sum_probs=25.8
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHhH
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRRt 157 (222)
.+..|.-||...- ...||++.|..|.+..|..
T Consensus 36 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 36 TNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 4678999997653 3589999999999998753
No 36
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.08 E-value=18 Score=28.67 Aligned_cols=31 Identities=13% Similarity=0.491 Sum_probs=25.2
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHh
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 156 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRR 156 (222)
.+..|.-||.+.- ...||++.|-.|.+..|.
T Consensus 35 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 68 (138)
T 2owa_A 35 ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68 (138)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHT
T ss_pred CCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhC
Confidence 3567999997653 358999999999999875
No 37
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=28.74 E-value=34 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=20.8
Q ss_pred CccccccCCCCcc------eeeccccchhhhHHHHhH
Q psy12688 127 EELCPVCGDKVSG------YHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 127 ~~~C~VCGd~asg------~HYGV~sCeaCk~FFRRt 157 (222)
...|..|+...+- .--| ..|+||..+|+..
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 3569999975431 2234 7899999999754
No 38
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.87 E-value=30 Score=29.97 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=26.0
Q ss_pred CCccccccCCCCcc---eeeccccchhhhHHHHhH
Q psy12688 126 IEELCPVCGDKVSG---YHYGLLTCESCKGFFKRT 157 (222)
Q Consensus 126 ~~~~C~VCGd~asg---~HYGV~sCeaCk~FFRRt 157 (222)
.+..|.-||...-. ..||++.|-.|.+..|..
T Consensus 36 ~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 35679999976543 589999999999998763
No 39
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=25.29 E-value=25 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.582 Sum_probs=25.2
Q ss_pred CCccccccCCCCc---ceeeccccchhhhHHHHh
Q psy12688 126 IEELCPVCGDKVS---GYHYGLLTCESCKGFFKR 156 (222)
Q Consensus 126 ~~~~C~VCGd~as---g~HYGV~sCeaCk~FFRR 156 (222)
.+..|.-||.+.- ...||++.|-.|.+..|.
T Consensus 21 ~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 21 SNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 3567999998654 358999999999999874
No 40
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.97 E-value=31 Score=27.50 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=24.4
Q ss_pred CccccccCCCCc-------cee--eccccchhhhHHHHhH
Q psy12688 127 EELCPVCGDKVS-------GYH--YGLLTCESCKGFFKRT 157 (222)
Q Consensus 127 ~~~C~VCGd~as-------g~H--YGV~sCeaCk~FFRRt 157 (222)
...|..||...+ -.| +++..|..|+.||...
T Consensus 14 ~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 14 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CCEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 346999998763 346 9999999999998654
No 41
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.62 E-value=43 Score=27.31 Aligned_cols=71 Identities=21% Similarity=0.415 Sum_probs=41.5
Q ss_pred CCccccccCCCCc-cee--eccccchhhhHHHHhHhhcCc----eec---cccCcccccCCCCCCCCcchHhHHHHHhcC
Q psy12688 126 IEELCPVCGDKVS-GYH--YGLLTCESCKGFFKRTVQNKK----VYT---CVAERSCHIDKTQRKRCPFCRFQKCLEVGM 195 (222)
Q Consensus 126 ~~~~C~VCGd~as-g~H--YGV~sCeaCk~FFRRtv~~~~----~~~---C~~~~~C~i~~~~R~~Cr~CRl~KCLevGM 195 (222)
+...|..||.... -.| +.|..|..|+.||....-..- ... |..++....- .-..|..|-=.+|++.-+
T Consensus 35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~Gg~l~~C--dn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC--GNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTCBCTTSSBSSCTTTSCCSEEEEC--SSTTTCCEEEHHHHHHHT
T ss_pred ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccccCCCCCcceeeEecCCCeEEee--CCCCCCCchhHHHHHHhc
Confidence 4567999997533 334 999999999999987643321 112 3333332111 112455555667777655
Q ss_pred Ccc
Q psy12688 196 KLE 198 (222)
Q Consensus 196 ~~e 198 (222)
-++
T Consensus 113 G~~ 115 (159)
T 3a1b_A 113 GPG 115 (159)
T ss_dssp CTT
T ss_pred CHh
Confidence 443
No 42
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=23.10 E-value=50 Score=22.37 Aligned_cols=26 Identities=35% Similarity=0.910 Sum_probs=19.3
Q ss_pred CCCccccccCCCCcce-eeccccchhh
Q psy12688 125 GIEELCPVCGDKVSGY-HYGLLTCESC 150 (222)
Q Consensus 125 ~~~~~C~VCGd~asg~-HYGV~sCeaC 150 (222)
.....|.|||.+.--+ .||...|+-|
T Consensus 16 ~g~~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 16 AGSRVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCCCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred CCcceeecCCCCcccccccCCcHHHHH
Confidence 3456799999875443 6998888776
No 43
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=21.76 E-value=57 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.696 Sum_probs=20.1
Q ss_pred CCCccccccCCCCcc-eeeccccchhhh
Q psy12688 125 GIEELCPVCGDKVSG-YHYGLLTCESCK 151 (222)
Q Consensus 125 ~~~~~C~VCGd~asg-~HYGV~sCeaCk 151 (222)
.....|.|||.+..- -.||...|+-|-
T Consensus 15 r~~nrC~~cGr~rg~iRkfgl~lcR~cF 42 (55)
T 2xzm_N 15 KDSKECRVCGARQGLITKYEMMTCRRCF 42 (55)
T ss_dssp GGGCCCTTTCCSSTTCCCSSSCCCHHHH
T ss_pred CCceEeecCCCCcchHHHhCCchhhHHH
Confidence 445679999997544 469988888773
No 44
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=20.12 E-value=61 Score=21.99 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=19.7
Q ss_pred CCCccccccCCCCcce-eeccccchhhh
Q psy12688 125 GIEELCPVCGDKVSGY-HYGLLTCESCK 151 (222)
Q Consensus 125 ~~~~~C~VCGd~asg~-HYGV~sCeaCk 151 (222)
.....|.|||.+.--+ .||...|+-|-
T Consensus 16 ~gs~rC~vcGr~~g~iRkfGl~lcR~cf 43 (56)
T 3u5c_d 16 KGSRQCRVCSSHTGLIRKYGLNICRQCF 43 (56)
T ss_dssp GGGCCCTTTCCCSSEECGGGCCEEHHHH
T ss_pred CCcceeecCCCCcccccccCcchhHHHH
Confidence 3345699999876444 69988887773
Done!