RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12688
(222 letters)
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 105 bits (262), Expect = 3e-30
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
+ +C +CGD+ SG HYG+ +CE CKGFFKRTV+ YTC + C IDK QR RC +CR
Sbjct: 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCR 64
Query: 187 FQKCLEVGMKLE 198
+QKCL +GMK E
Sbjct: 65 YQKCLAMGMKRE 76
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 102 bits (254), Expect = 6e-29
Identities = 30/70 (42%), Positives = 48/70 (68%)
Query: 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQ 188
+C VCGD+ +G+H+ +TCE CKGFF+R+++ K ++TC C I K R+ C CR +
Sbjct: 2 ICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLK 61
Query: 189 KCLEVGMKLE 198
+C+++GM E
Sbjct: 62 RCVDIGMMKE 71
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 101 bits (254), Expect = 6e-29
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 128 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRF 187
ELC VCGD+ SGYHY LTCE CKGFF+R+V VY C R+C +D R++C CR
Sbjct: 1 ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRL 60
Query: 188 QKCLEVGMKLE 198
+KCL VGM+ E
Sbjct: 61 KKCLAVGMRPE 71
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 98.5 bits (245), Expect = 1e-27
Identities = 40/72 (55%), Positives = 48/72 (66%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
+ LC VCGD SGYHYG+ +CE+CK FFKRT+Q Y+C A C I K +RK C CR
Sbjct: 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACR 63
Query: 187 FQKCLEVGMKLE 198
F K L+VGM E
Sbjct: 64 FMKALKVGMLKE 75
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 97.9 bits (243), Expect = 2e-27
Identities = 38/72 (52%), Positives = 47/72 (65%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
++ C +CGD+ SG HYG LTC SCK FFKR + K+ Y C + C IDK +RK CP CR
Sbjct: 2 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCR 61
Query: 187 FQKCLEVGMKLE 198
+KC E GM L
Sbjct: 62 LRKCYEAGMTLG 73
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 97.1 bits (241), Expect = 3e-27
Identities = 40/69 (57%), Positives = 48/69 (69%)
Query: 130 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQK 189
C VC D+ SG HYG+LTCE CK FFKR V+ + Y C E C IDK +RK CP CR++K
Sbjct: 3 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 62
Query: 190 CLEVGMKLE 198
CL+ GM LE
Sbjct: 63 CLQAGMNLE 71
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 95.8 bits (238), Expect = 1e-26
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 129 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYT-CVAERSCHIDKTQRKRCPFCRF 187
LC VCGD SG+HYG+L CE CKGFF+R++Q Y C+ +C I + R RC CRF
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 61
Query: 188 QKCLEVGMKLE 198
+KCL VGM +
Sbjct: 62 KKCLSVGMSRD 72
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 94.7 bits (235), Expect = 3e-26
Identities = 40/69 (57%), Positives = 49/69 (71%)
Query: 130 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQK 189
C VC DK SGYHYG+ CE CKGFF+R++Q VYTC +++C I+K R RC +CR QK
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 61
Query: 190 CLEVGMKLE 198
C EVGM E
Sbjct: 62 CFEVGMSKE 70
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 93.6 bits (232), Expect = 1e-25
Identities = 43/69 (62%), Positives = 48/69 (69%)
Query: 130 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCRFQK 189
C VCGD S HYG+ TCE CKGFFKRTVQ Y C+A + C +DK +R RC FCRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 190 CLEVGMKLE 198
CL VGM E
Sbjct: 63 CLAVGMVKE 71
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 92.5 bits (229), Expect = 2e-25
Identities = 37/70 (52%), Positives = 43/70 (61%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
C VC D SGYHYG+ +CE CK FFKR++Q Y C A C IDK +RK C CR
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 63
Query: 187 FQKCLEVGMK 196
+KC EVGM
Sbjct: 64 LRKCYEVGMM 73
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 87.9 bits (217), Expect = 3e-23
Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCV--AERSCHIDKTQRKRCPF 184
+ELC VCGDK +GYHY +TCE CKGFF+RT+Q + E C IDK R +C
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 60
Query: 185 CRFQKCLEVGMKLEV 199
CRF+KC+ VGM ++
Sbjct: 61 CRFKKCIYVGMATDL 75
>gi|152994664|ref|YP_001339499.1|(2-54:56) ribosomal protein L33
[Marinomonas sp. MWYL1]
gi|189042692|sp|A6VSY5.1|RL33_MARMS RecName: Full=50S
ribosomal protein L33 gi|150835588|gb|ABR69564.1|
ribosomal protein L33 [Marinomonas sp. MWYL1]
gi|87120855|ref|ZP_01076747.1| RpmG protein [Marinomonas
sp. MED121] gi|86163693|gb|EAQ64966.1| RpmG protein
[Marinomonas sp. MED121] gi|92115086|ref|YP_575014.1|
50S ribosomal protein L33P [Chromohalobacter salexigens
DSM 3043] gi|122419200|sp|Q1QT93.1|RL33_CHRSD RecName:
Full=50S ribosomal protein L33
gi|91798176|gb|ABE60315.1| LSU ribosomal protein L33P
[Chromohalobacter salexigens DSM 3043] E=1e-10 s/c=1.31
id=57% cov=102%
Length = 53
Score = 26.5 bits (59), Expect = 0.44
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 145 LTCESCKGFFKRTVQNKKVYTCVAERSCHIDK-TQRKRCPFCR 186
+ + G F T +NK+ DK +K P R
Sbjct: 11 MVSSAGTGHFYTTDKNKRNTP---------DKLEMKKFDPVVR 44
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli
[TaxId: 562]}
Length = 52
Score = 25.0 bits (55), Expect = 1.7
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 145 LTCESCKGFFKRTVQNKKVYTCVAERSCHIDK-TQRKRCPFCR 186
L + G F T +NK+ +K +K P R
Sbjct: 10 LVSSAGTGHFYTTTKNKRT---------KPEKLELKKFDPVVR 43
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 26.8 bits (59), Expect = 2.2
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 22/102 (21%)
Query: 97 DLSSAGISYHPFHTSTI--------AATPEHPDTKEGIEELCPVCGDKVSGYHYGLLTCE 148
+ PF + + E + LCP CG S G++
Sbjct: 126 QFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACG---SPPMAGMIRQG 182
Query: 149 SCKGFFKRTVQNKKVYTCVAERSCHID-KTQRKRCPFCRFQK 189
+ +C C + R +C C K
Sbjct: 183 G-------KETGLRYLSC---SLCACEWHYVRIKCSHCEESK 214
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.2 bits (54), Expect = 2.5
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 121 DTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFF 154
D + C VC L+ C+ C +
Sbjct: 10 DFAMEMGLACVVCRQMTVASGNQLVECQECHNLY 43
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 25.2 bits (55), Expect = 3.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 180 KRCPFCRFQKCLEVGMKLEV 199
K+ P +VGMKLE
Sbjct: 22 KKEPPKPPLNNFKVGMKLEA 41
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 24.1 bits (52), Expect = 4.4
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 120 PDTKEGIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQR 179
P + E C VC D LL C++C + C+ I +
Sbjct: 2 PLGSDHHMEFCRVCKDGGE-----LLCCDTCPSSYH--------IHCLNPPLPEIPNGEW 48
Query: 180 KRCPFCR 186
CP C
Sbjct: 49 L-CPRCT 54
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 23.3 bits (49), Expect = 8.0
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 127 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERSCHIDKTQRKRCPFCR 186
+C +C +++ + C R+ C++ + ++ C C
Sbjct: 6 VPVCWICNEELGNERFRACGCTGELENVHRS--------CLST---WLTISRNTACQICG 54
Query: 187 FQ 188
Sbjct: 55 VV 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.392
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 799,773
Number of extensions: 35441
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 34
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)