Query psy12689
Match_columns 72
No_of_seqs 100 out of 250
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 17:06:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01107 Na_K_ATPase_bet Sodi 100.0 4.3E-34 9.2E-39 209.3 8.8 72 1-72 211-288 (289)
2 PF00287 Na_K-ATPase: Sodium / 100.0 3.7E-31 8E-36 193.1 4.5 68 1-68 216-289 (289)
3 KOG3927|consensus 99.9 1.5E-27 3.3E-32 175.7 7.2 72 1-72 222-297 (300)
4 cd08690 C2_Freud-1 C2 domain f 73.9 20 0.00044 24.1 6.3 27 44-70 79-105 (155)
5 COG1709 Predicted transcriptio 47.5 19 0.0004 26.6 2.5 23 22-44 178-200 (241)
6 cd08394 C2A_Munc13 C2 domain f 46.1 44 0.00094 22.0 3.9 41 27-69 42-82 (127)
7 PF09112 N-glycanase_N: Peptid 45.4 73 0.0016 22.4 5.1 35 28-65 31-66 (177)
8 PF12249 AftA_C: Arabinofurano 43.9 7.9 0.00017 27.3 0.1 16 14-29 63-82 (178)
9 PF13895 Ig_2: Immunoglobulin 43.8 29 0.00062 18.6 2.4 25 28-52 2-26 (80)
10 cd05752 Ig1_FcgammaR_like Frst 38.1 30 0.00065 20.0 2.0 17 36-52 11-27 (78)
11 COG1607 Acyl-CoA hydrolase [Li 38.1 64 0.0014 22.0 3.8 21 38-58 85-105 (157)
12 PF04126 Cyclophil_like: Cyclo 36.2 52 0.0011 21.0 3.0 46 1-46 62-120 (120)
13 PF13927 Ig_3: Immunoglobulin 36.1 36 0.00078 17.8 2.0 10 43-52 18-27 (75)
14 cd03452 MaoC_C MaoC_C The C-t 35.8 1.2E+02 0.0025 19.3 4.8 39 31-71 82-121 (142)
15 PF02162 XYPPX: XYPPX repeat ( 34.8 22 0.00049 15.6 0.8 12 7-18 2-13 (15)
16 PF01870 Hjc: Archaeal hollida 33.6 91 0.002 19.2 3.7 21 28-53 27-47 (88)
17 cd05739 Ig3_RPTP_IIa_LAR_like 32.7 44 0.00095 18.7 2.0 16 40-55 1-16 (69)
18 cd08385 C2A_Synaptotagmin-1-5- 32.6 89 0.0019 18.9 3.6 25 44-69 83-107 (124)
19 cd05857 Ig2_FGFR Second immuno 32.1 45 0.00097 18.6 2.0 16 37-52 6-21 (85)
20 cd08387 C2A_Synaptotagmin-8 C2 31.8 96 0.0021 18.8 3.6 25 44-69 83-107 (124)
21 cd08391 C2A_C2C_Synaptotagmin_ 31.8 83 0.0018 18.7 3.3 22 46-69 71-92 (121)
22 cd05856 Ig2_FGFRL1-like Second 31.8 54 0.0012 17.9 2.3 16 37-52 6-21 (82)
23 cd04010 C2B_RasA3 C2 domain se 31.4 1.1E+02 0.0023 20.1 4.0 27 43-70 79-105 (148)
24 cd04967 Ig1_Contactin First Ig 31.3 69 0.0015 18.4 2.8 15 38-52 17-31 (91)
25 PF01190 Pollen_Ole_e_I: Polle 30.8 45 0.00098 20.0 2.0 33 37-69 20-55 (97)
26 cd05729 Ig2_FGFR_like Second i 30.2 41 0.0009 18.3 1.6 16 37-52 6-21 (85)
27 PRK07274 single-stranded DNA-b 29.6 1.6E+02 0.0034 19.0 4.5 14 37-50 65-78 (131)
28 cd05740 Ig_CEACAM_D4 Fourth im 28.9 59 0.0013 19.2 2.3 16 37-52 15-30 (91)
29 cd05758 Ig5_KIRREL3-like Fifth 28.2 52 0.0011 19.3 1.9 15 38-52 14-28 (98)
30 cd04968 Ig3_Contactin_like Thi 27.9 57 0.0012 18.6 2.0 15 38-52 14-28 (88)
31 cd08389 C2A_Synaptotagmin-14_1 27.5 1.2E+02 0.0026 18.8 3.5 27 42-69 81-107 (124)
32 cd05866 Ig1_NCAM-2 First immun 27.4 1E+02 0.0023 18.4 3.2 15 37-51 12-26 (92)
33 cd05737 Ig_Myomesin_like_C C-t 27.0 1.1E+02 0.0025 17.5 3.2 16 38-53 14-29 (92)
34 cd04047 C2B_Copine C2 domain s 26.3 1E+02 0.0023 18.2 3.0 25 44-69 71-95 (110)
35 cd04974 Ig3_FGFR Third immunog 26.1 65 0.0014 18.7 2.0 14 40-53 1-14 (90)
36 cd08393 C2A_SLP-1_2 C2 domain 26.0 1.4E+02 0.003 18.5 3.6 25 44-69 85-109 (125)
37 PF07117 DUF1373: Protein of u 25.4 71 0.0015 22.8 2.4 22 1-22 11-35 (210)
38 cd05735 Ig8_DSCAM Eight immuno 25.0 77 0.0017 18.4 2.2 13 40-52 1-13 (88)
39 cd04022 C2A_MCTP_PRT_plant C2 24.4 1.2E+02 0.0027 18.5 3.2 26 44-69 65-90 (127)
40 cd07693 Ig1_Robo First immunog 24.4 62 0.0013 18.1 1.7 17 37-53 13-29 (100)
41 cd05848 Ig1_Contactin-5 First 24.3 1.1E+02 0.0023 18.0 2.8 14 39-52 18-31 (94)
42 cd04481 RPA1_DBD_B_like RPA1_D 24.1 44 0.00095 20.4 1.1 24 27-53 22-45 (106)
43 cd05861 Ig1_PDGFR-alphabeta Fr 24.1 71 0.0015 18.4 1.9 15 40-54 1-15 (84)
44 cd05749 Ig2_Tyro3_like Second 23.7 68 0.0015 18.7 1.8 18 38-55 11-28 (81)
45 cd08680 C2_Kibra C2 domain fou 23.6 1.2E+02 0.0026 19.2 3.1 27 42-69 82-108 (124)
46 cd04977 Ig1_NCAM-1_like First 23.4 1.2E+02 0.0027 17.6 2.9 16 37-52 12-27 (92)
47 cd08381 C2B_PI3K_class_II C2 d 23.2 1.6E+02 0.0035 18.2 3.6 25 44-69 82-106 (122)
48 cd08682 C2_Rab11-FIP_classI C2 23.1 1.3E+02 0.0029 18.3 3.2 12 58-69 79-90 (126)
49 cd05745 Ig3_Peroxidasin Third 23.1 66 0.0014 17.7 1.6 13 40-52 2-14 (74)
50 TIGR03357 VI_zyme type VI secr 22.9 2.1E+02 0.0045 18.1 5.6 27 30-56 88-117 (133)
51 cd05764 Ig_2 Subgroup of the i 22.8 76 0.0017 17.2 1.8 13 40-52 1-13 (74)
52 cd05722 Ig1_Neogenin First imm 22.6 61 0.0013 18.7 1.5 14 39-52 13-26 (95)
53 cd05851 Ig3_Contactin-1 Third 22.4 78 0.0017 18.3 1.9 15 38-52 14-28 (88)
54 cd06152 YjgF_YER057c_UK114_lik 22.4 1.4E+02 0.003 18.7 3.2 22 29-50 92-114 (114)
55 cd00448 YjgF_YER057c_UK114_fam 22.4 1.6E+02 0.0035 17.0 3.3 23 27-49 85-107 (107)
56 cd08675 C2B_RasGAP C2 domain s 22.2 1.6E+02 0.0036 18.6 3.5 25 44-69 79-103 (137)
57 PF12997 DUF3881: Domain of un 22.0 1E+02 0.0023 23.2 2.9 25 14-50 68-92 (283)
58 cd05743 Ig_Perlecan_D2_like Im 21.9 93 0.002 17.3 2.1 14 40-53 1-14 (78)
59 cd05754 Ig3_Perlecan_like Thir 21.8 76 0.0016 17.9 1.7 15 38-52 14-28 (85)
60 KOG0937|consensus 21.5 1.6E+02 0.0035 23.4 3.9 46 3-51 251-298 (424)
61 cd05852 Ig5_Contactin-1 Fifth 21.3 75 0.0016 17.9 1.6 13 40-52 1-13 (73)
62 PF14485 DUF4431: Domain of un 21.1 1.5E+02 0.0033 16.2 2.8 20 39-58 18-37 (48)
63 PF05560 Bt_P21: Bacillus thur 21.1 1.3E+02 0.0029 20.8 3.0 29 41-69 145-175 (182)
64 PLN03200 cellulose synthase-in 21.0 1.2E+02 0.0027 28.7 3.5 31 35-69 2035-2065(2102)
65 PF09458 H_lectin: H-type lect 20.8 1.7E+02 0.0037 16.2 3.1 28 27-56 16-45 (72)
66 cd08386 C2A_Synaptotagmin-7 C2 20.8 2E+02 0.0043 17.3 3.6 25 45-70 85-109 (125)
67 cd04975 Ig4_SCFR_like Fourth i 20.6 1.6E+02 0.0035 17.8 3.1 13 39-51 17-29 (101)
68 cd04031 C2A_RIM1alpha C2 domai 20.5 2E+02 0.0043 17.2 3.5 26 44-70 86-111 (125)
69 PRK11401 putative endoribonucl 20.2 1.6E+02 0.0036 18.5 3.2 20 31-50 107-126 (129)
70 cd08388 C2A_Synaptotagmin-4-11 20.2 2E+02 0.0044 17.9 3.6 25 44-69 85-109 (128)
71 cd04981 IgV_H Immunoglobulin ( 20.2 1.5E+02 0.0031 18.3 2.9 15 38-52 10-24 (117)
72 cd06156 eu_AANH_C_2 A group of 20.1 1.6E+02 0.0035 18.5 3.1 24 26-49 95-118 (118)
No 1
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=4.3e-34 Score=209.34 Aligned_cols=72 Identities=35% Similarity=0.781 Sum_probs=68.5
Q ss_pred CcceeEecCCC-CCCCceeccC---CCCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcCC--CCCceeeEEEEEEeC
Q psy12689 1 MGTLSYYPWKG-FPGYFFPFQN---TEGYLAPVIAVHFESPAIGVLINIECKAWAHNIHHD--RHERRGSVHFELMID 72 (72)
Q Consensus 1 ig~i~Y~P~~g-f~~~YfPy~~---~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d--~~~~~G~v~F~l~vd 72 (72)
+|+|+|||++| ||++||||+| |++|+||||||||+|+++|++|+||||+||+||.++ +++++|||+|+|+||
T Consensus 211 ~g~i~YyP~~G~f~~~YfPY~gk~~q~~YlqPLVAVqf~~~~~n~~v~VeCk~~a~NI~~~~~~d~~~G~v~f~l~i~ 288 (289)
T TIGR01107 211 IGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEVRIECKIYGENIAYSNEKDRFLGRVDFKITIK 288 (289)
T ss_pred ccceEECCCCCCcCcccccccCcccCcCCcCCeEEEEeecCCCCcEEEEEEEEeccCCccCCCccccCCeEEEEEEec
Confidence 68999999998 9999999999 999999999999999999999999999999999994 466999999999997
No 2
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=99.97 E-value=3.7e-31 Score=193.14 Aligned_cols=68 Identities=49% Similarity=0.998 Sum_probs=45.4
Q ss_pred CcceeEecCC-CCCCCceeccC---CCCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcCCC--CCceeeEEEE
Q psy12689 1 MGTLSYYPWK-GFPGYFFPFQN---TEGYLAPVIAVHFESPAIGVLINIECKAWAHNIHHDR--HERRGSVHFE 68 (72)
Q Consensus 1 ig~i~Y~P~~-gf~~~YfPy~~---~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d~--~~~~G~v~F~ 68 (72)
+|+++|||++ |||.+||||+| |++|+||||||||+|+++|++|+||||+||+||++|+ ++++|+|+||
T Consensus 216 i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~PlVAVqf~n~~~n~~i~veCk~wakNI~~d~~~~~~~G~V~F~ 289 (289)
T PF00287_consen 216 IGPIEYYPSNGGFPLMYFPYYGKKAQPGYLSPLVAVQFTNPPRNVEINVECKAWAKNIPYDDERDKFLGRVHFK 289 (289)
T ss_dssp ---EEEE-STSEEEGGG-SB-TTTTSTT-----EEEEESSS-SSS-EEEEEEE-STT----SSS-TTSSB--EE
T ss_pred eeeEEEECCCCCcceeECCccCCccCCCCcCCeEEEEEecCCCCcEEEEEEEEeCCCCCCCCcCCcccEEEEeC
Confidence 5889999999 79999999999 9999999999999999999999999999999999976 5699999997
No 3
>KOG3927|consensus
Probab=99.94 E-value=1.5e-27 Score=175.72 Aligned_cols=72 Identities=47% Similarity=0.955 Sum_probs=69.2
Q ss_pred CcceeEecCCC-CCCCceecc---CCCCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcCCCCCceeeEEEEEEeC
Q psy12689 1 MGTLSYYPWKG-FPGYFFPFQ---NTEGYLAPVIAVHFESPAIGVLINIECKAWAHNIHHDRHERRGSVHFELMID 72 (72)
Q Consensus 1 ig~i~Y~P~~g-f~~~YfPy~---~~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d~~~~~G~v~F~l~vd 72 (72)
+|.++|||++| ||.+||||+ +|++|+||||||||+|+++|++|.||||+||+||.++++++.|+|+|+|+|+
T Consensus 222 i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~plvavkf~ni~~n~~v~IeCka~a~n~~~~~~~~~g~V~f~l~i~ 297 (300)
T KOG3927|consen 222 IGKVAYFPETGDFPLEYYPYYGKKNQPGYLQPLVAVKFTNIPRNEEVNIECKAWAENINHDRDTFGGRVRFELLIE 297 (300)
T ss_pred ccceeeeccCCCCCceecCccccccCCCccCceEEEecCCCCCCceEEEEeecccccCcchhhhhcceEEEEEecc
Confidence 57899999999 999999999 8999999999999999999999999999999998888888999999999985
No 4
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=73.94 E-value=20 Score=24.07 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=20.1
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFELM 70 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l~ 70 (72)
.+.|.+|.++--...++.+|++.+.|.
T Consensus 79 ~L~~~V~d~~~f~~~D~~iG~~~i~L~ 105 (155)
T cd08690 79 GLKFEVYHKGGFLRSDKLLGTAQVKLE 105 (155)
T ss_pred cEEEEEEeCCCcccCCCeeEEEEEEcc
Confidence 488999999753323569999998873
No 5
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=47.53 E-value=19 Score=26.56 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=18.3
Q ss_pred CCCCcCCeEEEEeeCCCCCcEEE
Q psy12689 22 TEGYLAPVIAVHFESPAIGVLIN 44 (72)
Q Consensus 22 ~~~Y~~PlVAVqf~n~~~n~~i~ 44 (72)
-..-.||+|||+..++++...|.
T Consensus 178 VstGRSPMVAirV~~lKP~aVVl 200 (241)
T COG1709 178 VSTGRSPMVAIRVSPLKPAAVVL 200 (241)
T ss_pred ccCCCCceEEEEccCCCccEEEE
Confidence 34567999999999998886653
No 6
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=46.10 E-value=44 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCeEEEEeeCCCCCcEEEEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 27 APVIAVHFESPAIGVLINIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 27 ~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
+|-+--+|.-...+..-.++=++|.++.. .+|+.|++.|.|
T Consensus 42 nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--~DD~lG~v~i~L 82 (127)
T cd08394 42 QPCWEQDFMFEINRLDLGLVIELWNKGLI--WDTLVGTVWIPL 82 (127)
T ss_pred CCceeeEEEEEEcCCCCEEEEEEEeCCCc--CCCceEEEEEEh
Confidence 67666665543333223366678998853 567999999876
No 7
>PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 3PMS_A 3KS7_D 1PNF_A 1PNG_A 1PGS_A.
Probab=45.42 E-value=73 Score=22.39 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=22.2
Q ss_pred CeEEEEeeCCCCCc-EEEEEEEeecCCCcCCCCCceeeE
Q psy12689 28 PVIAVHFESPAIGV-LINIECKAWAHNIHHDRHERRGSV 65 (72)
Q Consensus 28 PlVAVqf~n~~~n~-~i~IeCk~~a~NI~~d~~~~~G~v 65 (72)
=|-+|++....++. .|.++-+.-+.+ |.-|+.|+|
T Consensus 31 ilkkVklP~~~~~~~~v~l~vt~~snG---D~wDrtGsv 66 (177)
T PF09112_consen 31 ILKKVKLPEYKKNVMTVFLEVTQSSNG---DAWDRTGSV 66 (177)
T ss_dssp EEEEEEE-S--TTEEEEEEEEEEEEGG-----S--EEEE
T ss_pred EEEEEeCCcccccceEEEEEEEecCCC---CcccccceE
Confidence 35688899988998 888887776665 667899998
No 8
>PF12249 AftA_C: Arabinofuranosyltransferase A C terminal; InterPro: IPR020959 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the C-terminal domain of AftA.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=43.88 E-value=7.9 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=12.2
Q ss_pred CCceeccC----CCCCcCCe
Q psy12689 14 GYFFPFQN----TEGYLAPV 29 (72)
Q Consensus 14 ~~YfPy~~----~~~Y~~Pl 29 (72)
..||||.| +.+|-.||
T Consensus 63 lsyyPY~gFQalTsHYANPL 82 (178)
T PF12249_consen 63 LSYYPYWGFQALTSHYANPL 82 (178)
T ss_pred eEecccccccccchhhcCch
Confidence 46778876 77888887
No 9
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=43.80 E-value=29 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=16.9
Q ss_pred CeEEEEeeCCCCCcEEEEEEEeecC
Q psy12689 28 PVIAVHFESPAIGVLINIECKAWAH 52 (72)
Q Consensus 28 PlVAVqf~n~~~n~~i~IeCk~~a~ 52 (72)
|.+-..-.....+..+.+.|.+.+.
T Consensus 2 P~l~~~~~~v~~g~~~~l~C~~~~~ 26 (80)
T PF13895_consen 2 PVLSSSPQSVEEGDSVTLTCSVSGN 26 (80)
T ss_dssp -EEEEESSEEETTSEEEEEEEEESS
T ss_pred cEEEccceEEeCCCcEEEEEEEEcc
Confidence 3344444455678999999999854
No 10
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=38.14 E-value=30 Score=20.05 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=13.6
Q ss_pred CCCCCcEEEEEEEeecC
Q psy12689 36 SPAIGVLINIECKAWAH 52 (72)
Q Consensus 36 n~~~n~~i~IeCk~~a~ 52 (72)
....+..|.++|.+.+.
T Consensus 11 ~v~~G~~V~L~C~~~~~ 27 (78)
T cd05752 11 TIFQGEKVTLTCNGFNS 27 (78)
T ss_pred EeeCCCCEEEEEeCCCC
Confidence 44578999999999874
No 11
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=38.10 E-value=64 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEeecCCCcCCC
Q psy12689 38 AIGVLINIECKAWAHNIHHDR 58 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~NI~~d~ 58 (72)
.-.+.+.|++++|++|+..+.
T Consensus 85 ~GrTSm~V~Vev~~~~~~~~~ 105 (157)
T COG1607 85 TGRTSMEVGVEVWAEDIRSGE 105 (157)
T ss_pred cCcccEEEEEEEEEecccCCc
Confidence 456899999999999998753
No 12
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=36.16 E-value=52 Score=21.04 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=21.7
Q ss_pred CcceeEecCCC-CCCCc--eecc--CCCCCcCCeEEEE--------eeCCCCCcEEEEE
Q psy12689 1 MGTLSYYPWKG-FPGYF--FPFQ--NTEGYLAPVIAVH--------FESPAIGVLINIE 46 (72)
Q Consensus 1 ig~i~Y~P~~g-f~~~Y--fPy~--~~~~Y~~PlVAVq--------f~n~~~n~~i~Ie 46 (72)
.|+|.|||..+ |=..| +|+. +.+...+|++-+= |.++..+..|+||
T Consensus 62 ~GDi~Yw~pg~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~~~V~ie 120 (120)
T PF04126_consen 62 AGDIAYWPPGGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGGEKVRIE 120 (120)
T ss_dssp TTEEEEECCCTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TTEEEEEE
T ss_pred CceEEEeCCCCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCCCeEEeC
Confidence 48899997665 33333 2333 2335566665442 3344455555554
No 13
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=36.10 E-value=36 Score=17.80 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=8.6
Q ss_pred EEEEEEeecC
Q psy12689 43 INIECKAWAH 52 (72)
Q Consensus 43 i~IeCk~~a~ 52 (72)
+.++|++.+.
T Consensus 18 ~~l~C~~~~~ 27 (75)
T PF13927_consen 18 VTLTCSAEGG 27 (75)
T ss_dssp EEEEEEESSE
T ss_pred EEEEEEEccc
Confidence 8999999766
No 14
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=35.78 E-value=1.2e+02 Score=19.30 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEeeCCCC-CcEEEEEEEeecCCCcCCCCCceeeEEEEEEe
Q psy12689 31 AVHFESPAI-GVLINIECKAWAHNIHHDRHERRGSVHFELMI 71 (72)
Q Consensus 31 AVqf~n~~~-n~~i~IeCk~~a~NI~~d~~~~~G~v~F~l~v 71 (72)
-++|..|-. +..|++++++-.+. ...++..|.|.+++.+
T Consensus 82 ~~rf~~PV~~GDtl~~~~~V~~~~--~~~~~~~~~v~~~~~~ 121 (142)
T cd03452 82 NLRFLEPVYPGDTIQVRLTCKRKI--PRDGQDYGVVRWDAEV 121 (142)
T ss_pred eEEECCCCCCCCEEEEEEEEEEEe--ecCCCCcEEEEEEEEE
Confidence 466777554 78888888874433 2223456778777654
No 15
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=34.80 E-value=22 Score=15.60 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=7.6
Q ss_pred ecCCCCCCCcee
Q psy12689 7 YPWKGFPGYFFP 18 (72)
Q Consensus 7 ~P~~gf~~~YfP 18 (72)
||.+|+|.+=||
T Consensus 2 ~ppqG~pPQ~~P 13 (15)
T PF02162_consen 2 YPPQGYPPQGYP 13 (15)
T ss_pred CCCcCCCCCCCC
Confidence 567777765554
No 16
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=33.61 E-value=91 Score=19.19 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.2
Q ss_pred CeEEEEeeCCCCCcEEEEEEEeecCC
Q psy12689 28 PVIAVHFESPAIGVLINIECKAWAHN 53 (72)
Q Consensus 28 PlVAVqf~n~~~n~~i~IeCk~~a~N 53 (72)
=+||++ .++.+-||||...++
T Consensus 27 DiiA~~-----~~~~l~IEvKs~~~~ 47 (88)
T PF01870_consen 27 DIIAGK-----GGRYLAIEVKSTSKD 47 (88)
T ss_dssp SEEEEE-----TTEEEEEEEEEESSS
T ss_pred CEEEEC-----CCEEEEEEEeeccCC
Confidence 578876 677889999998876
No 17
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=32.68 E-value=44 Score=18.67 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.7
Q ss_pred CcEEEEEEEeecCCCc
Q psy12689 40 GVLINIECKAWAHNIH 55 (72)
Q Consensus 40 n~~i~IeCk~~a~NI~ 55 (72)
+..+.++|.+.+.=.+
T Consensus 1 G~~v~L~C~a~G~P~P 16 (69)
T cd05739 1 GGSVNLTCVAVGAPMP 16 (69)
T ss_pred CCeEEEEEEeeecCCC
Confidence 3568999999876443
No 18
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=32.63 E-value=89 Score=18.91 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=16.3
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.+++.+|..+- ...++.+|++.|.|
T Consensus 83 ~l~~~V~d~d~-~~~~~~lG~~~i~l 107 (124)
T cd08385 83 TLVFSVYDFDR-FSKHDLIGEVRVPL 107 (124)
T ss_pred EEEEEEEeCCC-CCCCceeEEEEEec
Confidence 46666666642 22356999999876
No 19
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=32.10 E-value=45 Score=18.63 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.3
Q ss_pred CCCCcEEEEEEEeecC
Q psy12689 37 PAIGVLINIECKAWAH 52 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~ 52 (72)
.+.+..+.++|.+.|.
T Consensus 6 v~~G~~~~L~C~~~g~ 21 (85)
T cd05857 6 VPAANTVKFRCPAAGN 21 (85)
T ss_pred cCCCCEEEEEEEcCCC
Confidence 4578999999998775
No 20
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=31.84 E-value=96 Score=18.82 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=16.3
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.+++.+|..+-. .++++.|++.|.|
T Consensus 83 ~l~i~V~d~~~~-~~~~~iG~~~i~l 107 (124)
T cd08387 83 TLEVLLYDFDQF-SRDECIGVVELPL 107 (124)
T ss_pred EEEEEEEECCCC-CCCceeEEEEEec
Confidence 456666766432 2356999999876
No 21
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=31.82 E-value=83 Score=18.70 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=13.3
Q ss_pred EEEeecCCCcCCCCCceeeEEEEE
Q psy12689 46 ECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 46 eCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
+..+|.++.. .++..|++.+.|
T Consensus 71 ~i~v~d~~~~--~~~~iG~~~i~l 92 (121)
T cd08391 71 EIELFDEDPD--KDDFLGRLSIDL 92 (121)
T ss_pred EEEEEecCCC--CCCcEEEEEEEH
Confidence 3334555443 345889888875
No 22
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=31.77 E-value=54 Score=17.86 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=12.5
Q ss_pred CCCCcEEEEEEEeecC
Q psy12689 37 PAIGVLINIECKAWAH 52 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~ 52 (72)
.+.+..+.++|++.+.
T Consensus 6 ~~~G~~v~L~C~~~g~ 21 (82)
T cd05856 6 RPVGSSVRLKCVASGN 21 (82)
T ss_pred ccCCCeEEEEEEeeEe
Confidence 4568899999998653
No 23
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=31.39 E-value=1.1e+02 Score=20.11 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=18.3
Q ss_pred EEEEEEeecCCCcCCCCCceeeEEEEEE
Q psy12689 43 INIECKAWAHNIHHDRHERRGSVHFELM 70 (72)
Q Consensus 43 i~IeCk~~a~NI~~d~~~~~G~v~F~l~ 70 (72)
..+++.+|...-. ..++++|.+.+.|.
T Consensus 79 ~~L~i~V~d~~~~-~~ddfLG~v~i~l~ 105 (148)
T cd04010 79 LELRVDLWHASMG-GGDVFLGEVRIPLR 105 (148)
T ss_pred EEEEEEEEcCCCC-CCCceeEEEEEecc
Confidence 4566777777542 34569999998763
No 24
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=31.33 E-value=69 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=11.0
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..+..+.++|++++.
T Consensus 17 ~~~~~~~l~C~~~g~ 31 (91)
T cd04967 17 SDEGKVSLNCRARGS 31 (91)
T ss_pred CCCCEEEEEEeeeEc
Confidence 344678999999764
No 25
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=30.79 E-value=45 Score=20.04 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=22.5
Q ss_pred CCCCcEEEEEEEeecCCCcC---CCCCceeeEEEEE
Q psy12689 37 PAIGVLINIECKAWAHNIHH---DRHERRGSVHFEL 69 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~NI~~---d~~~~~G~v~F~l 69 (72)
+=.+..|.|+|+--.++... ...|..|...++|
T Consensus 20 ~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l 55 (97)
T PF01190_consen 20 PLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIEL 55 (97)
T ss_pred cCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEe
Confidence 34678999999986554332 2366778777776
No 26
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=30.24 E-value=41 Score=18.35 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCcEEEEEEEeecC
Q psy12689 37 PAIGVLINIECKAWAH 52 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~ 52 (72)
...+..+.++|.+.+.
T Consensus 6 ~~~G~~~~l~C~~~~~ 21 (85)
T cd05729 6 VPAGSTVRLKCPASGN 21 (85)
T ss_pred ecCCCcEEEEEEcCCC
Confidence 3468889999998764
No 27
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=29.58 E-value=1.6e+02 Score=18.95 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=6.9
Q ss_pred CCCCcEEEEEEEee
Q psy12689 37 PAIGVLINIECKAW 50 (72)
Q Consensus 37 ~~~n~~i~IeCk~~ 50 (72)
+.++..|.|++++.
T Consensus 65 l~KG~~V~V~Grl~ 78 (131)
T PRK07274 65 ASKGSLISIDGELR 78 (131)
T ss_pred cCCCCEEEEEEEEE
Confidence 34455555555553
No 28
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=28.86 E-value=59 Score=19.17 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.1
Q ss_pred CCCCcEEEEEEEeecC
Q psy12689 37 PAIGVLINIECKAWAH 52 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~ 52 (72)
...+..+.++|.+.+.
T Consensus 15 v~~g~~v~l~C~a~g~ 30 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ 30 (91)
T ss_pred cccCCcEEEEEEeCCC
Confidence 4568899999999875
No 29
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=28.19 E-value=52 Score=19.29 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..+..+.++|++.|.
T Consensus 14 ~~G~~v~L~C~~~g~ 28 (98)
T cd05758 14 ILGDKGRVECFIFST 28 (98)
T ss_pred eCCCcEEEEEEEccc
Confidence 578999999999986
No 30
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=27.89 E-value=57 Score=18.56 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.1
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..+..+.++|.+.+.
T Consensus 14 ~~g~~v~l~C~~~g~ 28 (88)
T cd04968 14 LKGQNVTLECFALGN 28 (88)
T ss_pred eCCCcEEEEEEeeEe
Confidence 467899999998664
No 31
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=27.45 E-value=1.2e+02 Score=18.81 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=18.6
Q ss_pred EEEEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 42 LINIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 42 ~i~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
+..+.+++|+..- ..+++..|.+.+.|
T Consensus 81 ~~~L~~~V~~~~~-~~~~~~lG~~~i~L 107 (124)
T cd08389 81 NMALRFRLYGVER-MRKERLIGEKVVPL 107 (124)
T ss_pred cCEEEEEEEECCC-cccCceEEEEEEec
Confidence 3456788887742 34466899998876
No 32
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=27.41 E-value=1e+02 Score=18.35 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.6
Q ss_pred CCCCcEEEEEEEeec
Q psy12689 37 PAIGVLINIECKAWA 51 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a 51 (72)
...+..+.++|++.|
T Consensus 12 v~~G~~v~l~C~~~G 26 (92)
T cd05866 12 LSVGESKFFTCTAIG 26 (92)
T ss_pred EcCCCeEEEEEEEEE
Confidence 567899999999866
No 33
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=27.00 E-value=1.1e+02 Score=17.54 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=12.8
Q ss_pred CCCcEEEEEEEeecCC
Q psy12689 38 AIGVLINIECKAWAHN 53 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~N 53 (72)
..+..+.++|++.+.-
T Consensus 14 ~~G~~v~L~C~v~G~P 29 (92)
T cd05737 14 MEGKTLNLTCTVFGDP 29 (92)
T ss_pred eCCCcEEEEEEEEecC
Confidence 3678899999998764
No 34
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=26.26 E-value=1e+02 Score=18.19 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=15.2
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.+++.+|..+.. ..+++.|++++.|
T Consensus 71 ~l~~~V~d~d~~-~~d~~iG~~~~~l 95 (110)
T cd04047 71 PIKIEVYDYDSS-GKHDLIGEFETTL 95 (110)
T ss_pred EEEEEEEEeCCC-CCCcEEEEEEEEH
Confidence 444555555432 2356999998864
No 35
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=26.06 E-value=65 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=10.5
Q ss_pred CcEEEEEEEeecCC
Q psy12689 40 GVLINIECKAWAHN 53 (72)
Q Consensus 40 n~~i~IeCk~~a~N 53 (72)
+..+.++|++.+.-
T Consensus 1 G~~v~l~C~v~g~P 14 (90)
T cd04974 1 GSDVEFHCKVYSDA 14 (90)
T ss_pred CCcEEEEEEEeCCC
Confidence 35789999987663
No 36
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=25.98 E-value=1.4e+02 Score=18.49 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=15.5
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.+++.+|..+- ..+++..|.+.|.|
T Consensus 85 ~L~~~V~d~~~-~~~~~~iG~~~i~L 109 (125)
T cd08393 85 VLNLSVWHRDS-LGRNSFLGEVEVDL 109 (125)
T ss_pred EEEEEEEeCCC-CCCCcEeEEEEEec
Confidence 45566666531 23456899998876
No 37
>PF07117 DUF1373: Protein of unknown function (DUF1373); InterPro: IPR009803 This family consists of several hypothetical proteins which seem to be specific to Oryzias latipes (Japanese ricefish). Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=25.37 E-value=71 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=18.5
Q ss_pred CcceeEecCCC---CCCCceeccCC
Q psy12689 1 MGTLSYYPWKG---FPGYFFPFQNT 22 (72)
Q Consensus 1 ig~i~Y~P~~g---f~~~YfPy~~~ 22 (72)
||.|.-||..| ++...+||.+|
T Consensus 11 iGsi~C~PQg~~~~~~~~~~~ysGQ 35 (210)
T PF07117_consen 11 IGSISCFPQGGGGNMPSPMPPYSGQ 35 (210)
T ss_pred ccceeeeccCCCCCCCCCcccccCc
Confidence 68999999764 88889999986
No 38
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=25.00 E-value=77 Score=18.39 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.4
Q ss_pred CcEEEEEEEeecC
Q psy12689 40 GVLINIECKAWAH 52 (72)
Q Consensus 40 n~~i~IeCk~~a~ 52 (72)
++.+.++|++-|.
T Consensus 1 g~~~~l~C~~~g~ 13 (88)
T cd05735 1 GQKKEMSCTAHGE 13 (88)
T ss_pred CCeEEEEEEEECC
Confidence 4678999998766
No 39
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=24.36 E-value=1.2e+02 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=15.5
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.++..+|..+-..+.++++|++.+.|
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l 90 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISG 90 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcH
Confidence 45555666532222456899988865
No 40
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=24.35 E-value=62 Score=18.14 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.4
Q ss_pred CCCCcEEEEEEEeecCC
Q psy12689 37 PAIGVLINIECKAWAHN 53 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~N 53 (72)
...+..+.++|++.+.-
T Consensus 13 v~~G~~~~l~C~~~g~P 29 (100)
T cd07693 13 VSKGDPATLNCKAEGRP 29 (100)
T ss_pred EcCCCeEEEEeeCCcCC
Confidence 35788999999997753
No 41
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=24.33 E-value=1.1e+02 Score=18.02 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.2
Q ss_pred CCcEEEEEEEeecC
Q psy12689 39 IGVLINIECKAWAH 52 (72)
Q Consensus 39 ~n~~i~IeCk~~a~ 52 (72)
.+..+.++|++.|.
T Consensus 18 ~g~~v~l~C~~~G~ 31 (94)
T cd05848 18 DEKKVILNCEARGN 31 (94)
T ss_pred CCCEEEEEEEeeec
Confidence 46789999998664
No 42
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.
Probab=24.12 E-value=44 Score=20.37 Aligned_cols=24 Identities=8% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCeEEEEeeCCCCCcEEEEEEEeecCC
Q psy12689 27 APVIAVHFESPAIGVLINIECKAWAHN 53 (72)
Q Consensus 27 ~PlVAVqf~n~~~n~~i~IeCk~~a~N 53 (72)
+.-.-+++.+.. .-.++|.+|++-
T Consensus 22 ~~kr~~~i~D~~---~~~l~~tlwG~~ 45 (106)
T cd04481 22 SRKLDFEIRDLS---DERLKCTLWGEY 45 (106)
T ss_pred ceEEEEEEEeCC---CCEEEEEEEHHH
Confidence 333444444433 348999999983
No 43
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=24.07 E-value=71 Score=18.39 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=11.3
Q ss_pred CcEEEEEEEeecCCC
Q psy12689 40 GVLINIECKAWAHNI 54 (72)
Q Consensus 40 n~~i~IeCk~~a~NI 54 (72)
+..+.++|.+++...
T Consensus 1 Ge~~~l~C~~~~~~~ 15 (84)
T cd05861 1 GETITVNCIVQGNEV 15 (84)
T ss_pred CCcEEEEEEEECCCc
Confidence 457899999988633
No 44
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=23.71 E-value=68 Score=18.72 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCCcEEEEEEEeecCCCc
Q psy12689 38 AIGVLINIECKAWAHNIH 55 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~NI~ 55 (72)
..+..+.++|++.|..-+
T Consensus 11 ~~G~~v~l~C~a~G~P~P 28 (81)
T cd05749 11 TANTPFNLTCQAVGPPEP 28 (81)
T ss_pred cCCCCEEEEEEeeeecCC
Confidence 467889999999887543
No 45
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=23.59 E-value=1.2e+02 Score=19.17 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=18.5
Q ss_pred EEEEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 42 LINIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 42 ~i~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
...++-.+|+.+ ...+++..|.+.|.|
T Consensus 82 ~~~L~~~V~~~~-~~~~~~~lG~~~i~L 108 (124)
T cd08680 82 QKTLQVDVCSVG-PDQQEECLGGAQISL 108 (124)
T ss_pred cCEEEEEEEeCC-CCCceeEEEEEEEEh
Confidence 457777888775 223456889988875
No 46
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=23.36 E-value=1.2e+02 Score=17.61 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=13.1
Q ss_pred CCCCcEEEEEEEeecC
Q psy12689 37 PAIGVLINIECKAWAH 52 (72)
Q Consensus 37 ~~~n~~i~IeCk~~a~ 52 (72)
...+..+.++|++.+.
T Consensus 12 v~~G~~~~l~C~~~G~ 27 (92)
T cd04977 12 ISVGESKFFLCQVIGE 27 (92)
T ss_pred ECCCCeEEEEEEeEee
Confidence 4678999999999763
No 47
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=23.20 E-value=1.6e+02 Score=18.18 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=16.8
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.++..+|.++-. .+++++|.+.|.|
T Consensus 82 ~L~~~V~d~d~~-~~~~~lG~~~i~l 106 (122)
T cd08381 82 VLQVSVWSHDSL-VENEFLGGVCIPL 106 (122)
T ss_pred EEEEEEEeCCCC-cCCcEEEEEEEec
Confidence 556677776532 3456899998876
No 48
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=23.13 E-value=1.3e+02 Score=18.31 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=8.8
Q ss_pred CCCceeeEEEEE
Q psy12689 58 RHERRGSVHFEL 69 (72)
Q Consensus 58 ~~~~~G~v~F~l 69 (72)
.+++.|++.|.|
T Consensus 79 ~d~~iG~~~i~l 90 (126)
T cd08682 79 LDKFLGQVSIPL 90 (126)
T ss_pred CCceeEEEEEEH
Confidence 346889988865
No 49
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=23.06 E-value=66 Score=17.74 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=10.2
Q ss_pred CcEEEEEEEeecC
Q psy12689 40 GVLINIECKAWAH 52 (72)
Q Consensus 40 n~~i~IeCk~~a~ 52 (72)
+..+.++|++.|.
T Consensus 2 G~~v~l~C~~~g~ 14 (74)
T cd05745 2 GQTVDFLCEAQGY 14 (74)
T ss_pred CCeEEEEeECCEe
Confidence 5678999998654
No 50
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=22.88 E-value=2.1e+02 Score=18.07 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=17.1
Q ss_pred EEEEeeC---CCCCcEEEEEEEeecCCCcC
Q psy12689 30 IAVHFES---PAIGVLINIECKAWAHNIHH 56 (72)
Q Consensus 30 VAVqf~n---~~~n~~i~IeCk~~a~NI~~ 56 (72)
+.|++.. .+....+.|+|++++.|-..
T Consensus 88 ~~V~~~~~~~~~~~l~f~I~~~l~~~~~~~ 117 (133)
T TIGR03357 88 VRVTALEDEEDPLALRFRIEAELDVDGGPE 117 (133)
T ss_pred eEEEEecCCCCccEEEEEEEEEEEeCCCCc
Confidence 5566642 22235579999999988543
No 51
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=22.76 E-value=76 Score=17.25 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.5
Q ss_pred CcEEEEEEEeecC
Q psy12689 40 GVLINIECKAWAH 52 (72)
Q Consensus 40 n~~i~IeCk~~a~ 52 (72)
+..+.++|++.+.
T Consensus 1 G~~~~l~C~~~g~ 13 (74)
T cd05764 1 GQRATLRCKARGD 13 (74)
T ss_pred CCeEEEEEEccCc
Confidence 4578899997653
No 52
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=22.57 E-value=61 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.7
Q ss_pred CCcEEEEEEEeecC
Q psy12689 39 IGVLINIECKAWAH 52 (72)
Q Consensus 39 ~n~~i~IeCk~~a~ 52 (72)
.+..+.++|++.|.
T Consensus 13 ~g~~v~l~C~v~g~ 26 (95)
T cd05722 13 RGGPVVLNCSAEGE 26 (95)
T ss_pred CCCCEEEeeecccC
Confidence 57889999999775
No 53
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=22.45 E-value=78 Score=18.34 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.3
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..+..+.++|++.+.
T Consensus 14 ~~G~~v~l~C~~~G~ 28 (88)
T cd05851 14 LKGQNVTLECFALGN 28 (88)
T ss_pred eCCCcEEEEEEeccc
Confidence 467899999999765
No 54
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.42 E-value=1.4e+02 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=15.1
Q ss_pred eEEEEeeCCC-CCcEEEEEEEee
Q psy12689 29 VIAVHFESPA-IGVLINIECKAW 50 (72)
Q Consensus 29 lVAVqf~n~~-~n~~i~IeCk~~ 50 (72)
--.|.+..+. .+..|.|||.+|
T Consensus 92 ~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 92 WTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred eEEEEeccCCCCCcEEEEEEEEC
Confidence 3345555665 469999999886
No 55
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=22.40 E-value=1.6e+02 Score=17.01 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=17.2
Q ss_pred CCeEEEEeeCCCCCcEEEEEEEe
Q psy12689 27 APVIAVHFESPAIGVLINIECKA 49 (72)
Q Consensus 27 ~PlVAVqf~n~~~n~~i~IeCk~ 49 (72)
.+...|....++++..|.|||.+
T Consensus 85 Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 85 PARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred CceEEEEeccCCCCCEEEEEEEC
Confidence 45667777777888888888854
No 56
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=22.17 E-value=1.6e+02 Score=18.62 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=15.4
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.+++.+|..+-. ..+++.|++.+.|
T Consensus 79 ~l~i~V~d~~~~-~~~~~IG~~~i~l 103 (137)
T cd08675 79 ELRVELWHASMV-SGDDFLGEVRIPL 103 (137)
T ss_pred EEEEEEEcCCcC-cCCcEEEEEEEeh
Confidence 455555655432 3456899998875
No 57
>PF12997 DUF3881: Domain of unknown function, E. rectale Gene description (DUF3881); InterPro: IPR024541 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.04 E-value=1e+02 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCceeccCCCCCcCCeEEEEeeCCCCCcEEEEEEEee
Q psy12689 14 GYFFPFQNTEGYLAPVIAVHFESPAIGVLINIECKAW 50 (72)
Q Consensus 14 ~~YfPy~~~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~ 50 (72)
-+||||.-. +..+...++.||+++-
T Consensus 68 eyYfPY~~g------------~~~s~~e~~svErh~d 92 (283)
T PF12997_consen 68 EYYFPYFRG------------SGISSYEDVSVERHAD 92 (283)
T ss_pred EEEeeEEec------------CceeeeeeEEEEEEec
Confidence 579999632 2456778999999883
No 58
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=21.92 E-value=93 Score=17.35 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.2
Q ss_pred CcEEEEEEEeecCC
Q psy12689 40 GVLINIECKAWAHN 53 (72)
Q Consensus 40 n~~i~IeCk~~a~N 53 (72)
+..+.++|++.+.-
T Consensus 1 G~~v~l~C~~~g~P 14 (78)
T cd05743 1 GETVEFTCVATGVP 14 (78)
T ss_pred CCEEEEEEEEEEec
Confidence 35788999996643
No 59
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=21.79 E-value=76 Score=17.88 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..+..++++|++.+.
T Consensus 14 ~~G~~v~L~C~~~~~ 28 (85)
T cd05754 14 RPGADVSFICRAKSK 28 (85)
T ss_pred cCCCCEEEEEEcCCC
Confidence 468899999999754
No 60
>KOG0937|consensus
Probab=21.53 E-value=1.6e+02 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.2
Q ss_pred ceeEecCCC-CCCCceeccCCCCCcCCeEEEEeeC-CCCCcEEEEEEEeec
Q psy12689 3 TLSYYPWKG-FPGYFFPFQNTEGYLAPVIAVHFES-PAIGVLINIECKAWA 51 (72)
Q Consensus 3 ~i~Y~P~~g-f~~~YfPy~~~~~Y~~PlVAVqf~n-~~~n~~i~IeCk~~a 51 (72)
.|.+-|..| |++|.|--..+.. |++.+.=.. --..-.+.|-||+-+
T Consensus 251 ~i~FiPPdGeF~Lm~Y~ls~~vk---Pli~~~~~~~~~~~~ri~i~~K~~~ 298 (424)
T KOG0937|consen 251 TISFIPPDGEFELMRYRLSTHVK---PLIWFYQLIEEHSRSRIEVMVKLRE 298 (424)
T ss_pred eEEecCCCCceEEEEEEecCCCC---CeEEeeeeeeeccceeEEEEEechh
Confidence 478889998 9999998887776 999886322 223345777777744
No 61
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=21.34 E-value=75 Score=17.93 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=9.6
Q ss_pred CcEEEEEEEeecC
Q psy12689 40 GVLINIECKAWAH 52 (72)
Q Consensus 40 n~~i~IeCk~~a~ 52 (72)
+..+.++|++.+.
T Consensus 1 G~~~~l~C~~~g~ 13 (73)
T cd05852 1 GGRVIIECKPKAA 13 (73)
T ss_pred CCeEEEEEeccee
Confidence 3568899998664
No 62
>PF14485 DUF4431: Domain of unknown function (DUF4431)
Probab=21.14 E-value=1.5e+02 Score=16.24 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.6
Q ss_pred CCcEEEEEEEeecCCCcCCC
Q psy12689 39 IGVLINIECKAWAHNIHHDR 58 (72)
Q Consensus 39 ~n~~i~IeCk~~a~NI~~d~ 58 (72)
.++.|.|.+++|..+-.++.
T Consensus 18 ~Gk~V~V~G~l~~a~t~hH~ 37 (48)
T PF14485_consen 18 LGKRVSVTGKLFHAHTGHHH 37 (48)
T ss_pred cCCeEEEEEEEeeccCcccC
Confidence 57999999999999776643
No 63
>PF05560 Bt_P21: Bacillus thuringiensis P21 molecular chaperone protein; InterPro: IPR008423 This family contains several Bacillus thuringiensis P21 proteins. These proteins are thought to be molecular chaperones and have mosquitocidal properties [,].
Probab=21.06 E-value=1.3e+02 Score=20.80 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=23.0
Q ss_pred cEEEEEEEeecCCCcCCC-CC-ceeeEEEEE
Q psy12689 41 VLINIECKAWAHNIHHDR-HE-RRGSVHFEL 69 (72)
Q Consensus 41 ~~i~IeCk~~a~NI~~d~-~~-~~G~v~F~l 69 (72)
..|+++-.+..||++.+. ++ +.|..||..
T Consensus 145 ~pv~l~ltl~~knvk~~s~~n~fsgd~hfnm 175 (182)
T PF05560_consen 145 IPVNLQLTLIPKNVKQNSFKNIFSGDMHFNM 175 (182)
T ss_pred EeeeEEEEEecchhccccccceeccceeeeE
Confidence 556778889999999853 55 999999965
No 64
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=21.01 E-value=1.2e+02 Score=28.67 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=19.8
Q ss_pred eCCCCCcEEEEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 35 ESPAIGVLINIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 35 ~n~~~n~~i~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
..++.+..++|||.= ++.. .+|.+|+++|.|
T Consensus 2035 ~~p~~~~~l~iev~d--~d~f--~kd~~G~~~i~l 2065 (2102)
T PLN03200 2035 DSPPKGQKLHISCKS--KNTF--GKSSLGKVTIQI 2065 (2102)
T ss_pred cCCCCCCceEEEEEe--cCcc--CCCCCceEEEEH
Confidence 355556667777743 5433 345889998876
No 65
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=20.81 E-value=1.7e+02 Score=16.25 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=16.0
Q ss_pred CCeEEEEeeCCC--CCcEEEEEEEeecCCCcC
Q psy12689 27 APVIAVHFESPA--IGVLINIECKAWAHNIHH 56 (72)
Q Consensus 27 ~PlVAVqf~n~~--~n~~i~IeCk~~a~NI~~ 56 (72)
-|.|++-+..+. .+....+++.+ .||..
T Consensus 16 ~P~V~~~i~~~d~~~~~~~~~~~~v--~~Vt~ 45 (72)
T PF09458_consen 16 PPQVIVSINGLDFDSSQNIRFQVQV--SNVTT 45 (72)
T ss_dssp --EEEEEEEEEEE-BTTEEEEEEEE--ESEES
T ss_pred CCEEEEEEEEEEcCCCCceeEEEEE--EEECc
Confidence 477777766555 44555666555 77755
No 66
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=20.80 E-value=2e+02 Score=17.28 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=14.8
Q ss_pred EEEEeecCCCcCCCCCceeeEEEEEE
Q psy12689 45 IECKAWAHNIHHDRHERRGSVHFELM 70 (72)
Q Consensus 45 IeCk~~a~NI~~d~~~~~G~v~F~l~ 70 (72)
++..+|...- ...+++.|++.+.|.
T Consensus 85 l~~~v~d~d~-~~~~~~iG~~~i~l~ 109 (125)
T cd08386 85 LYLQVLDYDR-FSRNDPIGEVSLPLN 109 (125)
T ss_pred EEEEEEeCCC-CcCCcEeeEEEEecc
Confidence 4555555431 123468999988763
No 67
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=20.60 E-value=1.6e+02 Score=17.82 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=11.4
Q ss_pred CCcEEEEEEEeec
Q psy12689 39 IGVLINIECKAWA 51 (72)
Q Consensus 39 ~n~~i~IeCk~~a 51 (72)
.+..+.++|++.|
T Consensus 17 ~G~~v~L~c~v~g 29 (101)
T cd04975 17 LGENLNLVVEVEA 29 (101)
T ss_pred CCCCEEEEEEEEe
Confidence 5678999999998
No 68
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=20.52 E-value=2e+02 Score=17.18 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=16.2
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFELM 70 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l~ 70 (72)
.++..+|...-. ..++..|.+.+.|.
T Consensus 86 ~l~~~V~d~~~~-~~~~~iG~~~i~l~ 111 (125)
T cd04031 86 TLEVTVWDYDRD-GENDFLGEVVIDLA 111 (125)
T ss_pred EEEEEEEeCCCC-CCCcEeeEEEEecc
Confidence 456666665321 23468999998763
No 69
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=20.19 E-value=1.6e+02 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=14.7
Q ss_pred EEEeeCCCCCcEEEEEEEee
Q psy12689 31 AVHFESPAIGVLINIECKAW 50 (72)
Q Consensus 31 AVqf~n~~~n~~i~IeCk~~ 50 (72)
+|+...++.+-.|.|||.+.
T Consensus 107 ~v~v~~L~~~~~VEIe~~A~ 126 (129)
T PRK11401 107 CVQVARLPKDVKLEIEAIAV 126 (129)
T ss_pred EEEcccCCCCCeEEEEEEEE
Confidence 45555667788889998875
No 70
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=20.18 E-value=2e+02 Score=17.89 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=15.9
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.++.++|..+- ..+++..|++.+.|
T Consensus 85 ~L~~~V~d~d~-~~~d~~lG~~~i~L 109 (128)
T cd08388 85 SLHFAVLSFDR-YSRDDVIGEVVCPL 109 (128)
T ss_pred EEEEEEEEcCC-CCCCceeEEEEEec
Confidence 35666666532 23456889998876
No 71
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=20.15 E-value=1.5e+02 Score=18.29 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=11.8
Q ss_pred CCCcEEEEEEEeecC
Q psy12689 38 AIGVLINIECKAWAH 52 (72)
Q Consensus 38 ~~n~~i~IeCk~~a~ 52 (72)
..++.++++|.....
T Consensus 10 ~~G~~vtL~C~~~~~ 24 (117)
T cd04981 10 KPGQSLKLSCKASGF 24 (117)
T ss_pred cCCCCEEEEEEEeCC
Confidence 378999999987543
No 72
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.09 E-value=1.6e+02 Score=18.46 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=19.7
Q ss_pred cCCeEEEEeeCCCCCcEEEEEEEe
Q psy12689 26 LAPVIAVHFESPAIGVLINIECKA 49 (72)
Q Consensus 26 ~~PlVAVqf~n~~~n~~i~IeCk~ 49 (72)
..+..+|....++++-.|.|||.+
T Consensus 95 ~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 95 NPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred CCcEEEEEcccCCCCCeEEEEEeC
Confidence 466778888899999999999963
Done!