Query psy12689
Match_columns 72
No_of_seqs 100 out of 250
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 17:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_B Potassium-transporting 100.0 7.4E-34 2.5E-38 206.8 9.0 71 2-72 213-289 (290)
2 3kdp_B Sodium/potassium-transp 100.0 2.6E-34 8.8E-39 208.9 1.9 72 1-72 207-285 (286)
3 2zxe_B Na+,K+-ATPase beta subu 100.0 1.9E-33 6.3E-38 205.9 5.9 72 1-72 226-304 (305)
4 3quw_A Protein MMF1; chorismat 39.1 17 0.00059 23.3 2.1 24 30-53 130-153 (153)
5 2cjs_A UNC-13 homolog A, MUNC1 25.7 75 0.0026 20.0 3.5 24 44-69 71-94 (167)
6 1wwb_X Protein (brain derived 22.3 59 0.002 17.9 2.2 18 35-52 11-28 (103)
7 1he7_A High affinity nerve gro 22.1 70 0.0024 19.5 2.7 17 33-49 8-24 (126)
8 3alx_A Hemagglutinin, CDW150; 21.0 58 0.002 25.4 2.5 28 12-54 368-397 (559)
9 3sd2_A Putative member of DUF3 20.9 1.5E+02 0.0053 18.1 4.9 45 27-71 44-89 (101)
10 2zb6_A Hemagglutinin protein; 19.5 46 0.0016 25.6 1.6 14 41-54 419-432 (481)
No 1
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=100.00 E-value=7.4e-34 Score=206.79 Aligned_cols=71 Identities=25% Similarity=0.498 Sum_probs=66.5
Q ss_pred cceeEecCC-CCCCCceecc---CCCCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcCC-CCC-ceeeEEEEEEeC
Q psy12689 2 GTLSYYPWK-GFPGYFFPFQ---NTEGYLAPVIAVHFESPAIGVLINIECKAWAHNIHHD-RHE-RRGSVHFELMID 72 (72)
Q Consensus 2 g~i~Y~P~~-gf~~~YfPy~---~~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d-~~~-~~G~v~F~l~vd 72 (72)
|+|+|||++ |||++||||+ +|++|+||||||||+|+++|++|+||||+||+||.+| ++| ++|||+|+|+|+
T Consensus 213 ~~i~YyP~~ggf~~~YfPYygk~~q~~YlqPLVAVqf~n~~~n~~v~VeCk~~a~NI~~d~~~d~~~G~V~Fkl~i~ 289 (290)
T 3ixz_B 213 LQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ 289 (290)
T ss_pred ceEEECCCCCCcCceeCCccCCcCCcCCcCCeEEEEEecCCCCcEEEEEEEEeccCCccCCCCCCccceEEEEEEec
Confidence 679999999 6999999999 6999999999999999999999999999999999996 344 899999999985
No 2
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=99.98 E-value=2.6e-34 Score=208.89 Aligned_cols=72 Identities=31% Similarity=0.695 Sum_probs=67.9
Q ss_pred CcceeEecCC---CCCCCceeccCC---CCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcC-CCCCceeeEEEEEEeC
Q psy12689 1 MGTLSYYPWK---GFPGYFFPFQNT---EGYLAPVIAVHFESPAIGVLINIECKAWAHNIHH-DRHERRGSVHFELMID 72 (72)
Q Consensus 1 ig~i~Y~P~~---gf~~~YfPy~~~---~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~-d~~~~~G~v~F~l~vd 72 (72)
+|+|+|||++ |||++||||+|+ ++|+||||||||+|+++|++|+||||+||+||.+ |+++++|||+|+|+|.
T Consensus 207 ig~i~YyP~~g~~gfp~~YfPYygk~~~~~YlqPLVAVqf~n~~~n~~v~VeCk~~a~NI~~~~~d~~~G~v~fkl~i~ 285 (286)
T 3kdp_B 207 VGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVK 285 (286)
T ss_dssp CCCBCCCCTTSCSSCBTTSCSBCTTTSCTTCCCCCCCBCBCCSCCSCCCCBEEEECSTTCCCCSSCTTTTSCCBEEECC
T ss_pred ccceEEcCCCCCCCCCcccCCCCCCcCCCCCcCCeEEEEeecCCCCcEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence 6899999997 599999999996 9999999999999999999999999999999999 5677999999999984
No 3
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=99.98 E-value=1.9e-33 Score=205.91 Aligned_cols=72 Identities=26% Similarity=0.687 Sum_probs=68.0
Q ss_pred CcceeEecCC---CCCCCceeccC---CCCCcCCeEEEEeeCCCCCcEEEEEEEeecCCCcCC-CCCceeeEEEEEEeC
Q psy12689 1 MGTLSYYPWK---GFPGYFFPFQN---TEGYLAPVIAVHFESPAIGVLINIECKAWAHNIHHD-RHERRGSVHFELMID 72 (72)
Q Consensus 1 ig~i~Y~P~~---gf~~~YfPy~~---~~~Y~~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d-~~~~~G~v~F~l~vd 72 (72)
+|+|+|||++ |||++||||+| |++|+||||||||+|+++|++|+||||+||+||.+| +++++|||+|+|+||
T Consensus 226 ~g~i~Y~P~~g~~gfp~~YfPY~gk~~~~~Yl~PLVAVqf~n~~~n~~v~VeCka~a~NI~~~~~d~~~G~v~fkl~i~ 304 (305)
T 2zxe_B 226 IGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIEVK 304 (305)
T ss_dssp CSCEEEECGGGCSEEEGGGCSBCCTTTCTTCCCCEEEEEECCSCCSSCEEEEEEECCSSCCCCSSCTTSSBCCEEEEEC
T ss_pred cCCeEEECCCCCCCcCccccCCCCccCCcCCcCCeEEEEeecCCCCCEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence 5899999998 79999999999 999999999999999999999999999999999775 466999999999996
No 4
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=39.09 E-value=17 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEeeCCCCCcEEEEEEEeecCC
Q psy12689 30 IAVHFESPAIGVLINIECKAWAHN 53 (72)
Q Consensus 30 VAVqf~n~~~n~~i~IeCk~~a~N 53 (72)
-+|+...++.+..|.|||.+..+|
T Consensus 130 t~V~V~~L~~~~lVEIeaiA~~pn 153 (153)
T 3quw_A 130 SCVGVASLPLNVDLEMEVIAVEKN 153 (153)
T ss_dssp EEEECSCCGGGCSEEEEEEEECC-
T ss_pred EEEEcccCCCCCEEEEEEEEEeCC
Confidence 467888888999999999998776
No 5
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=25.68 E-value=75 Score=19.97 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=16.2
Q ss_pred EEEEEeecCCCcCCCCCceeeEEEEE
Q psy12689 44 NIECKAWAHNIHHDRHERRGSVHFEL 69 (72)
Q Consensus 44 ~IeCk~~a~NI~~d~~~~~G~v~F~l 69 (72)
.++..+|.++ ...+++.|++.|.|
T Consensus 71 ~L~~~V~D~d--~~~dd~iG~~~i~L 94 (167)
T 2cjs_A 71 GLTVEVWNKG--LIWDTMVGTVWIPL 94 (167)
T ss_dssp EEEEEEEECC--SSCCEEEEEEEEEG
T ss_pred EEEEEEEECC--CCCCceEEEEEEEH
Confidence 3555667777 33456999998865
No 6
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=22.28 E-value=59 Score=17.90 Aligned_cols=18 Identities=22% Similarity=0.112 Sum_probs=13.0
Q ss_pred eCCCCCcEEEEEEEeecC
Q psy12689 35 ESPAIGVLINIECKAWAH 52 (72)
Q Consensus 35 ~n~~~n~~i~IeCk~~a~ 52 (72)
.....+..+.++|++.|.
T Consensus 11 ~~~~~~~~~~~~c~v~G~ 28 (103)
T 1wwb_X 11 ESPTSDHHWCIPFTVKGN 28 (103)
T ss_dssp CCCCCCCEEEEEEEEECS
T ss_pred cCceECcEEEEEEEEEEe
Confidence 344567788999988665
No 7
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=22.06 E-value=70 Score=19.47 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=13.5
Q ss_pred EeeCCCCCcEEEEEEEe
Q psy12689 33 HFESPAIGVLINIECKA 49 (72)
Q Consensus 33 qf~n~~~n~~i~IeCk~ 49 (72)
++..+.....+.++|++
T Consensus 8 ~l~~~~~~~~~~l~c~v 24 (126)
T 1he7_A 8 QLHTAVEMHHWCIPFSV 24 (126)
T ss_dssp CCCCCCCCCEEEEEEEE
T ss_pred EccCCccCccEEEEEEE
Confidence 55566677899999998
No 8
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich; HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Probab=20.97 E-value=58 Score=25.45 Aligned_cols=28 Identities=32% Similarity=0.905 Sum_probs=19.0
Q ss_pred CCCCceeccCCCCCcCCeEEEEeeCCCCC--cEEEEEEEeecCCC
Q psy12689 12 FPGYFFPFQNTEGYLAPVIAVHFESPAIG--VLINIECKAWAHNI 54 (72)
Q Consensus 12 f~~~YfPy~~~~~Y~~PlVAVqf~n~~~n--~~i~IeCk~~a~NI 54 (72)
-.++||||.- +.++ ..++|||-.|..-+
T Consensus 368 ssSY~YPfRL---------------~~KG~P~~LrIECFpW~~kL 397 (559)
T 3alx_A 368 SFSYFYPFRL---------------PIKGVPIELQVECFTWDQKL 397 (559)
T ss_dssp SCCEEEEEEC---------------SCCEEEEEEEEEEEEETTEE
T ss_pred ceeeEeeEEe---------------ecCCCccEEEEEEEeccCce
Confidence 6678888842 1222 55699999998754
No 9
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=20.94 E-value=1.5e+02 Score=18.07 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCeEEEEeeCCCCCcEEEEEEEeecCCCcCCC-CCceeeEEEEEEe
Q psy12689 27 APVIAVHFESPAIGVLINIECKAWAHNIHHDR-HERRGSVHFELMI 71 (72)
Q Consensus 27 ~PlVAVqf~n~~~n~~i~IeCk~~a~NI~~d~-~~~~G~v~F~l~v 71 (72)
.|-|.|.+.|...++.|.-++-.....|..|. -...|.-..+|..
T Consensus 44 ~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~~ 89 (101)
T 3sd2_A 44 KDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHIIL 89 (101)
T ss_dssp CSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEEE
T ss_pred CCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEEe
Confidence 35566666676677777777666655444443 2246666666654
No 10
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane, transmembrane, virion, viral protein; HET: NAG; 2.60A {Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A* 2rkc_A* 3inb_A*
Probab=19.52 E-value=46 Score=25.61 Aligned_cols=14 Identities=21% Similarity=0.904 Sum_probs=11.3
Q ss_pred cEEEEEEEeecCCC
Q psy12689 41 VLINIECKAWAHNI 54 (72)
Q Consensus 41 ~~i~IeCk~~a~NI 54 (72)
..++|||-.|..-+
T Consensus 419 ~~LrIECFpW~~kL 432 (481)
T 2zb6_A 419 IELQVECFTWDQKL 432 (481)
T ss_dssp CEEEEEEEECSSSE
T ss_pred cEEEEEEEeccCce
Confidence 56789999998764
Done!