RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12689
         (72 letters)



>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain. 
          Length = 289

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 2   GTLSYYPWKG-FPGYFFPFQNTE---GYLAPVIAVHFESPAIGVLINIECKAWAHNIHHD 57
           G + Y+P  G F   ++P+   +    YL P++AV F +    V + +ECK +A NI +D
Sbjct: 217 GNIEYFPMGGGFDLMYYPYYGKKLQPNYLQPLVAVKFTNLTRNVEVRVECKIYAENIKND 276

Query: 58  R-HERR-GSVHFE 68
              +R  G V F+
Sbjct: 277 DPRDRFLGRVEFK 289


>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
           This model describes the Na+/K+ ATPase beta subunit in
           eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
           pump) is intimately associated with the plasma membrane.
           It couples the energy released by the hydrolysis of ATP
           to extrude 3 Na+ ions, with the concomitant uptake of
           2K+ ions, against their ionic gradients [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 289

 Score = 46.6 bits (111), Expect = 8e-08
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)

Query: 2   GTLSYYPWKG-FPGYFFPF---QNTEGYLAPVIAVHFESPAIGVLINIECKAWAHNI--- 54
           G + YYP  G FP  +FP+   +    YL P++AV F +  +   + IECK +  NI   
Sbjct: 212 GNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEVRIECKIYGENIAYS 271

Query: 55  -HHDRHERRGSVHFE 68
              DR   R      
Sbjct: 272 NEKDRFLGRVDFKIT 286


>gnl|CDD|237970 PRK15453, PRK15453, phosphoribulokinase; Provisional.
          Length = 290

 Score = 24.0 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 5/25 (20%)

Query: 39  IGV--LINIECKAWAHNIHHDRHER 61
           IGV  ++N+E   W   IH D  ER
Sbjct: 151 IGVVPIVNLE---WIQKIHRDTSER 172


>gnl|CDD|236731 PRK10658, PRK10658, putative alpha-glucosidase; Provisional.
          Length = 665

 Score = 24.1 bits (53), Expect = 9.0
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 14/48 (29%)

Query: 28 PVIAVHFESPA---IGVLINIECKAWAHNIHHDRHERRGSVHFELMID 72
          P+  + F SP    IGV I           H       G  HF L I 
Sbjct: 51 PLFTIRFSSPQEGVIGVRI----------EHFQGALDNG-PHFPLNIL 87


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.144    0.494 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,843,688
Number of extensions: 285516
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 10,937,602
Length adjustment: 42
Effective length of query: 30
Effective length of database: 9,074,734
Effective search space: 272242020
Effective search space used: 272242020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)