RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12689
         (72 letters)



>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
           K+-ATPase, P-type ATPase, membrane protein, hydrolase,
           aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
           2xzb_B
          Length = 290

 Score = 98.6 bits (245), Expect = 3e-27
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 1   MGTLSYYPWKG-FPGYFFPFQNTE---GYLAPVIAVHFESPAIGVLINIECKAWAHNIHH 56
              + Y+P  G +  ++FP+   +    Y  P++A    +      + I CK  A ++  
Sbjct: 212 PLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPRNRDVVIVCKILAEHVSF 271

Query: 57  D--RHERRGSVHFELMID 72
           D       G V F+L I 
Sbjct: 272 DNPHDPYEGKVEFKLKIQ 289


>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
           heterotrimeric membrane protein complex, ATP- hydrolase,
           ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
           PDB: 3n2f_B* 3n23_B*
          Length = 286

 Score = 94.0 bits (233), Expect = 2e-25
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 1   MGTLSYYPWKGFPGY---FFPFQN---TEGYLAPVIAVHFESPAIGVLINIECKAWAHNI 54
           +GT+ Y+   G+PG+   ++P+        YL P++AV F +  +   I IECKA+  NI
Sbjct: 207 VGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDTEIRIECKAYGENI 266

Query: 55  HHDRHER-RGSVHFELMID 72
            +   +R +G    ++ + 
Sbjct: 267 GYSEKDRFQGRFDVKIEVK 285


>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
           binding, haloacid dehydrogenease superfamily, phosphate
           analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
           PDB: 3a3y_B* 3b8e_B*
          Length = 305

 Score = 90.9 bits (225), Expect = 3e-24
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 1   MGTLSYYP---WKGFPGYFFPFQN---TEGYLAPVIAVHFESPAIGVLINIECKAWAHNI 54
           +G++ Y+    + GFP  ++P+      + YL P++A+ F +    + + IECK +  NI
Sbjct: 226 IGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENI 285

Query: 55  HHDRHERRGSVHFELMID 72
            +   + R    FE+ I+
Sbjct: 286 DYSEKD-RFRGRFEVKIE 302


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 0.47
 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 10/28 (35%)

Query: 23 EGYL---APVIAVHFES-PAIGVLINIE 46
          +  L   A       +S PA+ +   +E
Sbjct: 26 QASLKLYAD------DSAPALAIKATME 47


>3cla_A Type III chloramphenicol acetyltransferase; transferase
           (acyltransferase); HET: CLM; 1.75A {Escherichia coli}
           SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
           1qca_A*
          Length = 213

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 3   TLSYYPWKGFPGYFFPFQNTEGYLAPVIAV 32
            +S  PW  F  +     N   Y AP+I +
Sbjct: 140 NISALPWVNFDSFNLNVANFTDYFAPIITM 169


>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing
          alpha polypeptide; C2 domain, lipid binding,
          PI3-kinase, transferase; 2.30A {Mus musculus}
          Length = 134

 Score = 24.9 bits (55), Expect = 2.0
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 55 HHDRHERRGSVHFEL 69
          HH  H   G+V   +
Sbjct: 1  HHHHHHGSGAVKLSV 15


>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural
          genomics, ontario centre for structural proteomics,
          OCSP; NMR {Pseudomonas aeruginosa}
          Length = 118

 Score = 23.7 bits (51), Expect = 5.7
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 47 CKAWAHNIHHDRHERRGSVHF 67
          CK W H    +    RG + F
Sbjct: 43 CKHWGHKFEVELTPERGFIDF 63


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.0 bits (51), Expect = 6.4
 Identities = 6/31 (19%), Positives = 8/31 (25%)

Query: 5   SYYPWKGFPGYFFPFQNTEGYLAPVIAVHFE 35
            Y   K F          + Y    I  H +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.144    0.494 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,233,322
Number of extensions: 57883
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 9
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)