RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12689
         (72 letters)



>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
           {Escherichia coli [TaxId: 562]}
          Length = 214

 Score = 24.1 bits (52), Expect = 1.9
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 3   TLSYYPWKGFPGYFFPFQNTEGYLAPVIAVH 33
            +S  PW  F  +     N + + APV  + 
Sbjct: 140 FVSANPWVSFTSFDLNVANMDNFFAPVFTMG 170


>d1wd3a2 b.42.8.1 (A:338-499) Alpha-L-arabinofuranosidase B (AbfB),
           C-terminal domain {Aspergillus kawachii [TaxId: 40384]}
          Length = 162

 Score = 22.9 bits (49), Expect = 3.7
 Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 1/29 (3%)

Query: 5   SYYPWKGFPGYFFPFQNTEGYLAPVIAVH 33
           S   W  +P  +F       Y A    V 
Sbjct: 113 SLRSWS-YPTRYFRHYENVLYAASNGGVQ 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.144    0.494 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,085
Number of extensions: 11039
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)