BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12692
(187 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|270004815|gb|EFA01263.1| ftz transcription factor 1 [Tribolium castaneum]
Length = 588
Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 110/170 (64%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
QVDDQMKLLQHSWSDMLVLDHMHQRMHN LPDE TLHNGQKFDLLSLGLLGVP+L D F
Sbjct: 419 FQVDDQMKLLQHSWSDMLVLDHMHQRMHNNLPDEMTLHNGQKFDLLSLGLLGVPSLADHF 478
Query: 125 TQVTHKLSELKF---------------PNC------------------------------ 139
T +T KL ELKF P+
Sbjct: 479 TDITAKLQELKFDVSDYICVKFLLLLNPDVRGITNKKHVQEGYEQVQQALLEYTVTCYPQ 538
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF K+M +LPE+H +A+RGEEHLYHKHC+G APTQTLLMEMLHAKRK
Sbjct: 539 IQDKFNKMMQLLPEIHSLATRGEEHLYHKHCSGSAPTQTLLMEMLHAKRK 588
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELKFD+SDYICVKFLLLLNPDVRGI N+ HV+EG+EQVQ+ALL+Y +T YPQIQ D K
Sbjct: 487 ELKFDVSDYICVKFLLLLNPDVRGITNKKHVQEGYEQVQQALLEYTVTCYPQIQ-DKFNK 545
Query: 73 LLQ 75
++Q
Sbjct: 546 MMQ 548
>gi|189235773|ref|XP_970369.2| PREDICTED: similar to ecdysone response nuclear receptor Ftz-F1
[Tribolium castaneum]
Length = 540
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 112/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDHMHQRMHN LPDE TLHNGQKFDLLSLGLLGVP+L
Sbjct: 368 FKDLKVDDQMKLLQHSWSDMLVLDHMHQRMHNNLPDEMTLHNGQKFDLLSLGLLGVPSLA 427
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D FT +T KL ELKF P+
Sbjct: 428 DHFTDITAKLQELKFDVSDYICVKFLLLLNPDVRGITNKKHVQEGYEQVQQALLEYTVTC 487
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF K+M +LPE+H +A+RGEEHLYHKHC+G APTQTLLMEMLHAKRK
Sbjct: 488 YPQIQDKFNKMMQLLPEIHSLATRGEEHLYHKHCSGSAPTQTLLMEMLHAKRK 540
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELKFD+SDYICVKFLLLLNPDVRGI N+ HV+EG+EQVQ+ALL+Y +T YPQIQ D K
Sbjct: 439 ELKFDVSDYICVKFLLLLNPDVRGITNKKHVQEGYEQVQQALLEYTVTCYPQIQ-DKFNK 497
Query: 73 LLQ 75
++Q
Sbjct: 498 MMQ 500
>gi|194326123|emb|CAQ57670.1| nuclear receptor [Blattella germanica]
Length = 602
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDHMHQRMHN LPDETTL NGQKFDLL LGLLGVPTL
Sbjct: 430 FKDLKVDDQMKLLQHSWSDMLVLDHMHQRMHNNLPDETTLPNGQKFDLLCLGLLGVPTLA 489
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F+ + KL +LKF NC
Sbjct: 490 DHFSDLMAKLQDLKFDVTDYICVKFLLLLNPEVRGIMNRRHVQEGYDQVQQALMDYTVNC 549
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+ +LPE+H +ASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK
Sbjct: 550 YPQIQDKFTKLLLVLPEIHHMASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 602
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 59/76 (77%), Gaps = 8/76 (10%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+LKFD++DYICVKFLLLLNP+VRGI+NR HV+EG++QVQ+AL+DY + YPQIQ D K
Sbjct: 501 DLKFDVTDYICVKFLLLLNPEVRGIMNRRHVQEGYDQVQQALMDYTVNCYPQIQ-DKFTK 559
Query: 73 LLQHSWSDMLVLDHMH 88
LL LVL +H
Sbjct: 560 LL-------LVLPEIH 568
>gi|307199034|gb|EFN79758.1| Nuclear hormone receptor FTZ-F1 [Harpegnathos saltator]
Length = 231
Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 112/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 59 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 118
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL +LKF NC
Sbjct: 119 DLFNDLSKKLQDLKFDLSDYVCMKFLMLLNHEVRGLVNKKHVQEGHEQVQRALMDYSMNC 178
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LPE+H +ASRGE+HLYHKHCNGGAPTQTLLMEMLHAKRK
Sbjct: 179 YPALPDKFNKLLAVLPEIHVVASRGEDHLYHKHCNGGAPTQTLLMEMLHAKRK 231
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 47/53 (88%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+LKFD+SDY+C+KFL+LLN +VRG++N+ HV+EGHEQVQ+AL+DY + YP +
Sbjct: 130 DLKFDLSDYVCMKFLMLLNHEVRGLVNKKHVQEGHEQVQRALMDYSMNCYPAL 182
>gi|242019865|ref|XP_002430379.1| Nuclear hormone receptor FTZ-F1, putative [Pediculus humanus
corporis]
gi|212515503|gb|EEB17641.1| Nuclear hormone receptor FTZ-F1, putative [Pediculus humanus
corporis]
Length = 406
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 113/173 (65%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQRMHN LPDETTL NGQKFDLL LGLLGVPTL
Sbjct: 234 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRMHNNLPDETTLPNGQKFDLLCLGLLGVPTLA 293
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D FT +T+KL +LKF P+
Sbjct: 294 DHFTDLTNKLQDLKFDVSDYICVKFLLLLNPDVRGISNRKHVQEGHEQVLQALLDYTLTI 353
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL +LPE+H++ASRGE+HLYHKHC+GGAPTQTLLMEMLHAKRK
Sbjct: 354 YPHIQDKFTKLQQVLPEIHQMASRGEDHLYHKHCSGGAPTQTLLMEMLHAKRK 406
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 57/77 (74%), Gaps = 8/77 (10%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+LKFD+SDYICVKFLLLLNPDVRGI NR HV+EGHEQV +ALLDY +T YP IQ D+
Sbjct: 305 DLKFDVSDYICVKFLLLLNPDVRGISNRKHVQEGHEQVLQALLDYTLTIYPHIQ--DKFT 362
Query: 73 LLQHSWSDMLVLDHMHQ 89
LQ VL +HQ
Sbjct: 363 KLQQ------VLPEIHQ 373
>gi|307169515|gb|EFN62157.1| Nuclear hormone receptor FTZ-F1 [Camponotus floridanus]
Length = 231
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 110/175 (62%), Gaps = 47/175 (26%)
Query: 60 TAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPT 119
T + ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDE TLHNGQKFDLL LGLLGVPT
Sbjct: 57 TFFKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDEMTLHNGQKFDLLCLGLLGVPT 116
Query: 120 LRDRFTQVTHKLSELKFPNC---------------------------------------- 139
L D F ++ KL ELKF
Sbjct: 117 LADLFKDLSKKLQELKFDTSDYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQTLMEYTV 176
Query: 140 -------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LP++HE+A+RGEEHLY KHCNG APTQTLLMEMLHAKRK
Sbjct: 177 ACYPSLPDKFNKLLAVLPDIHEVATRGEEHLYQKHCNGSAPTQTLLMEMLHAKRK 231
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD SDYIC+KFL+LLN DVRG++N+ HV+EGHEQVQ+ L++Y + YP +
Sbjct: 130 ELKFDTSDYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQTLMEYTVACYPSL 182
>gi|345494868|ref|XP_001600363.2| PREDICTED: nuclear hormone receptor FTZ-F1 [Nasonia vitripennis]
Length = 776
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 604 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 663
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL ELKF C
Sbjct: 664 DLFNNLSTKLQELKFDLSDYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQALLDYTLTC 723
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LPE+H +ASRGE+HLY KHCNGGAPTQTLLMEMLHAKRK
Sbjct: 724 YPSIPDKFNKLLAVLPEIHVVASRGEDHLYQKHCNGGAPTQTLLMEMLHAKRK 776
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 66/95 (69%), Gaps = 8/95 (8%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELKFD+SDYIC+KFL+LLN DVRG++N+ HV+EGHEQVQ+ALLDY +T YP I D+
Sbjct: 675 ELKFDLSDYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQALLDYTLTCYPSI--PDKFN 732
Query: 73 LLQHSWSDMLVL-----DHMHQRMHN-ALPDETTL 101
L ++ V+ DH++Q+ N P +T L
Sbjct: 733 KLLAVLPEIHVVASRGEDHLYQKHCNGGAPTQTLL 767
>gi|315248867|gb|ADT91626.1| transcription factor betaFTZ-F1 [Spodoptera litura]
Length = 552
Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 111/167 (66%), Gaps = 44/167 (26%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQHSWSDMLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L D F
Sbjct: 365 LKVDDQMKLLQHSWSDMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLADHF 424
Query: 125 TQVTHKLSELKFP---------------------------------------NC-----D 140
++ +KL+ELKF +C D
Sbjct: 425 NELQNKLAELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGYQTALLDYTLSCYPTIQD 484
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
KFGKL+ ++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 485 KFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 531
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 42/54 (77%), Gaps = 3/54 (5%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKFLLLLNP+VRGI+N V +G+ Q ALLDY ++ YP IQ
Sbjct: 433 ELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGY---QTALLDYTLSCYPTIQ 483
>gi|380013038|ref|XP_003690577.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Apis florea]
Length = 506
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 334 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 393
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
D F ++ KL ELKF
Sbjct: 394 DLFNDLSSKLQELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTC 453
Query: 137 -PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF KL+++LP +H +ASRGE+HLY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 454 YPSIPDKFNKLLAVLPGIHVVASRGEDHLYQKHCSGGAPTQTLLMEMLHAKRK 506
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 48/53 (90%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+SDYIC+KFL+LLN +VRG++N+ HV+EGHEQVQ+ALLDY +T YP I
Sbjct: 405 ELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTCYPSI 457
>gi|17979670|gb|AAL50351.1| nuclear hormone receptor betaFTZ-F1 [Manduca sexta]
Length = 582
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 109/170 (64%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQHSWSDMLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP L D F
Sbjct: 371 LKVDDQMKLLQHSWSDMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPALADHF 430
Query: 125 TQVTHKLSELKFP------------------------------------------NC--- 139
++ +KL+ELKF C
Sbjct: 431 NELQNKLAELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGYQTVQAALLDYTLTCYPT 490
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFGKL+ ++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 491 VQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 540
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKFLLLLNP+VRGI+N V +G++ VQ ALLDY +T YP +Q
Sbjct: 439 ELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGYQTVQAALLDYTLTCYPTVQ 492
>gi|328776085|ref|XP_001122182.2| PREDICTED: nuclear hormone receptor FTZ-F1 [Apis mellifera]
Length = 690
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 110/173 (63%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 518 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 577
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL ELKF C
Sbjct: 578 DLFNDLSSKLQELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTC 637
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LP +H +ASRGE+HLY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 638 YPSIPDKFNKLLAVLPGIHVVASRGEDHLYQKHCSGGAPTQTLLMEMLHAKRK 690
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 48/53 (90%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+SDYIC+KFL+LLN +VRG++N+ HV+EGHEQVQ+ALLDY +T YP I
Sbjct: 589 ELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTCYPSI 641
>gi|332025633|gb|EGI65795.1| Nuclear hormone receptor FTZ-F1 [Acromyrmex echinatior]
Length = 231
Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 113/175 (64%), Gaps = 47/175 (26%)
Query: 60 TAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPT 119
T + ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDETTLHNGQKFDLL LGLLGVP+
Sbjct: 57 TFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRLHNNLPDETTLHNGQKFDLLCLGLLGVPS 116
Query: 120 LRDRFTQVTHKLSELKF------------------------------------------- 136
L + F +++ L ELKF
Sbjct: 117 LAETFRELSKTLQELKFDVPEYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQALMEYTL 176
Query: 137 ---PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF KL+++LP++HE+A++GEEHLY KHCNGGAPTQTLLMEMLHAKRK
Sbjct: 177 SHHPSVLDKFNKLLAVLPDIHEVATKGEEHLYQKHCNGGAPTQTLLMEMLHAKRK 231
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 47/53 (88%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ +YIC+KFL+LLN DVRG++N+ HV+EGHEQVQ+AL++Y ++ +P +
Sbjct: 130 ELKFDVPEYICMKFLMLLNHDVRGLVNKKHVQEGHEQVQQALMEYTLSHHPSV 182
>gi|383853385|ref|XP_003702203.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Megachile
rotundata]
Length = 684
Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 512 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 571
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL ELKF C
Sbjct: 572 DIFNDLSSKLQELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTC 631
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LPE+H +A+RGE+HLY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 632 YPSIPDKFNKLLAVLPEIHVVATRGEDHLYQKHCSGGAPTQTLLMEMLHAKRK 684
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 48/53 (90%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+SDYIC+KFL+LLN +VRG++N+ HV+EGHEQVQ+ALLDY +T YP I
Sbjct: 583 ELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQEGHEQVQQALLDYTLTCYPSI 635
>gi|350406354|ref|XP_003487743.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Bombus impatiens]
Length = 607
Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 110/173 (63%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 435 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 494
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL ELKF C
Sbjct: 495 DLFNDLSSKLQELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQDGHEQVQQALLDYTLTC 554
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LP +H +ASRGE+HLY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 555 YPSIPDKFNKLLAVLPGIHVVASRGEDHLYQKHCSGGAPTQTLLMEMLHAKRK 607
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 48/53 (90%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+SDYIC+KFL+LLN +VRG++N+ HV++GHEQVQ+ALLDY +T YP I
Sbjct: 506 ELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQDGHEQVQQALLDYTLTCYPSI 558
>gi|340716230|ref|XP_003396603.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Bombus terrestris]
Length = 680
Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 110/173 (63%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 508 FKDLKVDDQMKLLQHSWSDMLVLDHLHQRLHNNLPDETTLHNGQKFDLLCLGLLGVPSLA 567
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ KL ELKF C
Sbjct: 568 DLFNDLSTKLQELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQDGHEQVQQALLDYTLTC 627
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+++LP +H +ASRGE+HLY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 628 YPSIPDKFNKLLAVLPGIHVVASRGEDHLYQKHCSGGAPTQTLLMEMLHAKRK 680
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 48/53 (90%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+SDYIC+KFL+LLN +VRG++N+ HV++GHEQVQ+ALLDY +T YP I
Sbjct: 579 ELKFDLSDYICMKFLMLLNHEVRGLVNKKHVQDGHEQVQQALLDYTLTCYPSI 631
>gi|162952024|ref|NP_001037528.2| nuclear hormone receptor FTZ-F1 [Bombyx mori]
gi|44889025|sp|P49867.2|FTZF1_BOMMO RecName: Full=Nuclear hormone receptor FTZ-F1; AltName:
Full=BmFTZ-F1; AltName: Full=Nuclear receptor subfamily
5 group A member 3
gi|16903866|gb|AAL30663.1|AF426830_1 ecdysone response nuclear receptor Ftz-F1 [Bombyx mori]
Length = 534
Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 109/173 (63%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ SWS MLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 361 FKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLA 420
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ +KL+ELKF C
Sbjct: 421 DHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTC 480
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFGKL+ ++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 481 YPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 533
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKF+LLLNP+VRGI+N V EG++ VQ ALLDY +T YP IQ
Sbjct: 432 ELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQ 485
>gi|389614483|dbj|BAM20289.1| ftz transcription factor 1, partial [Papilio xuthus]
Length = 350
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 107/170 (62%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ SWSDMLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP L D F
Sbjct: 160 LKVDDQMKLLQDSWSDMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPALADHF 219
Query: 125 TQVTHKLSELKFP------------------------------------------NC--- 139
+ +KL+ELKF C
Sbjct: 220 NDLQNKLAELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGYQTVQAALLDYTLTCYPS 279
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL++++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 280 IQDKFSKLVTLVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 329
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKFLLLLNP+VRGI+N V +G++ VQ ALLDY +T YP IQ
Sbjct: 228 ELKFDVPDYICVKFLLLLNPEVRGIVNVKCVRDGYQTVQAALLDYTLTCYPSIQ 281
>gi|341926128|dbj|BAK53999.1| nuclear hormone receptor [Bombyx mori]
Length = 541
Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 108/170 (63%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ SWS MLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L D F
Sbjct: 371 LKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLADHF 430
Query: 125 TQVTHKLSELKFP------------------------------------------NC--- 139
++ +KL+ELKF C
Sbjct: 431 NELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPT 490
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFGKL+ ++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 491 IQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 540
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKF+LLLNP+VRGI+N V EG++ VQ ALLDY +T YP IQ
Sbjct: 439 ELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQ 492
>gi|357614859|gb|EHJ69332.1| nuclear hormone receptor FTZ-F1 [Danaus plexippus]
Length = 202
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/170 (53%), Positives = 107/170 (62%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
+ VDDQMKLLQ+SWS MLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L D F
Sbjct: 33 VNVDDQMKLLQNSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLADHF 92
Query: 125 TQVTHKLSELKFP------------------------------------------NC--- 139
++ +KLS+LKF C
Sbjct: 93 NELQNKLSDLKFDVSDYICVKFLLLLNPEVRGIGNVKCVRDGYHTVQAALLDYTLTCYPG 152
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFGKL+ ++PE+H +A+RGEE+LY +HC G AP QTLLMEMLHAKRK
Sbjct: 153 ITDKFGKLVMVVPEIHALAARGEEYLYQRHCAGQAPMQTLLMEMLHAKRK 202
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+LKFD+SDYICVKFLLLLNP+VRGI N V +G+ VQ ALLDY +T YP I
Sbjct: 101 DLKFDVSDYICVKFLLLLNPEVRGIGNVKCVRDGYHTVQAALLDYTLTCYPGI 153
>gi|195440416|ref|XP_002068038.1| GK10750 [Drosophila willistoni]
gi|194164123|gb|EDW79024.1| GK10750 [Drosophila willistoni]
Length = 810
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+LLSLGLLGVP L
Sbjct: 637 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLG 696
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF PN
Sbjct: 697 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPNVRGIVNKKTVSEGHDNVQAALLDYTLTC 756
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF +L++ILPE+H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 757 YPSVNDKFSRLVNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRK 809
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP+VRGI+N+ V EGH+ VQ ALLDY +
Sbjct: 695 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPNVRGIVNKKTVSEGHDNVQAALLDYTL 754
Query: 60 TAYPQI 65
T YP +
Sbjct: 755 TCYPSV 760
>gi|328711947|ref|XP_001945464.2| PREDICTED: nuclear hormone receptor FTZ-F1-like [Acyrthosiphon
pisum]
Length = 666
Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 107/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+HQ MHN L +E LHNGQKFDLL+LGLLGV T+
Sbjct: 494 FKDLKVDDQMKLLQHSWSDMLVLDHIHQHMHNNLANEIMLHNGQKFDLLALGLLGVTTMA 553
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F QV +L ELKF P+
Sbjct: 554 DCFAQVIDRLQELKFDVGDYICLKFLLLLNPDVKGIGNSKHVHEGHEQVLKALLDYCITA 613
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+S+LPE+H IA+RGEE LY KHC+GGAPTQTLLMEMLHAKRK
Sbjct: 614 NSQVQDKFTKLLSVLPEIHHIATRGEESLYLKHCSGGAPTQTLLMEMLHAKRK 666
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELKFD+ DYIC+KFLLLLNPDV+GI N HV EGHEQV KALLDYCITA Q+Q D K
Sbjct: 565 ELKFDVGDYICLKFLLLLNPDVKGIGNSKHVHEGHEQVLKALLDYCITANSQVQ-DKFTK 623
Query: 73 LL 74
LL
Sbjct: 624 LL 625
>gi|195022948|ref|XP_001985668.1| GH17194 [Drosophila grimshawi]
gi|193899150|gb|EDV98016.1| GH17194 [Drosophila grimshawi]
Length = 965
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 792 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 851
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL ELKF P+
Sbjct: 852 DYFNELQNKLQELKFDMGDYVCMKFLILLNPDVRGIVNKKTVLEGHENVQAALLDYTLTC 911
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF +L++ILPE+H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 912 YPSVNDKFRRLLNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRK 964
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 1 MGNYYPRQSGEL-ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L ELKFD+ DY+C+KFL+LLNPDVRGI+N+ V EGHE VQ ALLDY +
Sbjct: 850 LGDYFNELQNKLQELKFDMGDYVCMKFLILLNPDVRGIVNKKTVLEGHENVQAALLDYTL 909
Query: 60 TAYPQIQVDDQMKLL 74
T YP V+D+ + L
Sbjct: 910 TCYP--SVNDKFRRL 922
>gi|195160888|ref|XP_002021304.1| GL25259 [Drosophila persimilis]
gi|194118417|gb|EDW40460.1| GL25259 [Drosophila persimilis]
Length = 950
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+LLSLGLLGVP L
Sbjct: 777 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLS 836
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
D F ++ +KL +LKF
Sbjct: 837 DYFNEIQNKLQDLKFDMGDYVCMKFLILLNPTVRGIVNRKTVSEGHDNVQAALLDYTLTC 896
Query: 137 -PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF +L++ILP++H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 897 YPSVNDKFSRLVNILPDIHAMAARGEEHLYIKHCAGSAPTQTLLMEMLHAKRK 949
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +T YP +
Sbjct: 848 DLKFDMGDYVCMKFLILLNPTVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSV 900
>gi|198465087|ref|XP_001353488.2| GA17924 [Drosophila pseudoobscura pseudoobscura]
gi|198150009|gb|EAL30999.2| GA17924 [Drosophila pseudoobscura pseudoobscura]
Length = 1057
Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+LLSLGLLGVP L
Sbjct: 884 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLS 943
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
D F ++ +KL +LKF
Sbjct: 944 DYFNEIQNKLQDLKFDMGDYVCMKFLILLNPTVRGIVNRKTVSEGHDNVQAALLDYTLTC 1003
Query: 137 -PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF +L++ILP++H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 1004 YPSVNDKFSRLVNILPDIHAMAARGEEHLYIKHCAGSAPTQTLLMEMLHAKRK 1056
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +T YP +
Sbjct: 955 DLKFDMGDYVCMKFLILLNPTVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSV 1007
>gi|195378520|ref|XP_002048031.1| GJ13743 [Drosophila virilis]
gi|194155189|gb|EDW70373.1| GJ13743 [Drosophila virilis]
Length = 1022
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 849 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 908
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 909 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNKKTVVEGHENVQAALLDYTLTC 968
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF +L++ILPE+H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 969 YPSVNDKFRRLLNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRK 1021
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNPDVRGI+N+ V EGHE VQ ALLDY +
Sbjct: 907 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNKKTVVEGHENVQAALLDYTL 966
Query: 60 TAYPQIQVDDQMKLL 74
T YP V+D+ + L
Sbjct: 967 TCYP--SVNDKFRRL 979
>gi|195129727|ref|XP_002009306.1| GI13962 [Drosophila mojavensis]
gi|193920915|gb|EDW19782.1| GI13962 [Drosophila mojavensis]
Length = 757
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 584 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 643
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 644 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNKKTVVEGHENVQAALLDYTLTC 703
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF +L++ILPE+H +A+RGEEHLY KHC G APTQTLLMEMLHAKRK
Sbjct: 704 YPSVNDKFRRLLNILPEIHAMAARGEEHLYSKHCAGSAPTQTLLMEMLHAKRK 756
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNPDVRGI+N+ V EGHE VQ ALLDY +
Sbjct: 642 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNKKTVVEGHENVQAALLDYTL 701
Query: 60 TAYPQIQVDDQMKLL 74
T YP V+D+ + L
Sbjct: 702 TCYP--SVNDKFRRL 714
>gi|195494509|ref|XP_002094868.1| GE22055 [Drosophila yakuba]
gi|194180969|gb|EDW94580.1| GE22055 [Drosophila yakuba]
Length = 1039
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 107/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 866 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRLHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 925
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 926 DYFNELQNKLRDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 985
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A+RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 986 YPSVNDKFRGLVNILPEIHAMAARGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 1038
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGEL-ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L +LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 924 LGDYFNELQNKLRDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 983
Query: 60 TAYPQI 65
T YP +
Sbjct: 984 TCYPSV 989
>gi|194871251|ref|XP_001972809.1| GG15724 [Drosophila erecta]
gi|190654592|gb|EDV51835.1| GG15724 [Drosophila erecta]
Length = 1039
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 107/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 866 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 925
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 926 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 985
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A+RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 986 YPSVNDKFRGLVNILPEIHAMAARGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 1038
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 924 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 983
Query: 60 TAYPQI 65
T YP +
Sbjct: 984 TCYPSV 989
>gi|195591348|ref|XP_002085404.1| GD12327 [Drosophila simulans]
gi|194197413|gb|EDX10989.1| GD12327 [Drosophila simulans]
Length = 1024
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 107/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 851 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 910
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 911 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 970
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A+RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 971 YPSVNDKFRGLVNILPEIHAMAARGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 1023
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 909 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 968
Query: 60 TAYPQI 65
T YP +
Sbjct: 969 TCYPSV 974
>gi|194751787|ref|XP_001958205.1| GF10806 [Drosophila ananassae]
gi|190625487|gb|EDV41011.1| GF10806 [Drosophila ananassae]
Length = 1012
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 105/173 (60%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+LLSLGLLGVP L
Sbjct: 839 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLA 898
Query: 122 DRFTQVTHKLSELKFPNCD----------------------------------------- 140
D F ++ +KL +LKF D
Sbjct: 899 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNRKTVSDGHDNVQAAMLDYTLTC 958
Query: 141 ------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
KF +L++ILPE+H +A+RGEEHLY KH G APTQTLLMEMLHAKRK
Sbjct: 959 YPSVTEKFRRLVNILPEIHAMAARGEEHLYTKHVAGSAPTQTLLMEMLHAKRK 1011
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 44/53 (83%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+LKFD+ DY+C+KFL+LLNPDVRGI+NR V +GH+ VQ A+LDY +T YP +
Sbjct: 910 DLKFDMGDYVCMKFLILLNPDVRGIVNRKTVSDGHDNVQAAMLDYTLTCYPSV 962
>gi|15292001|gb|AAK93269.1| LD34889p [Drosophila melanogaster]
Length = 423
Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 106/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 250 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 309
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 310 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 369
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 370 YPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 422
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 308 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 367
Query: 60 TAYPQI 65
T YP +
Sbjct: 368 TCYPSV 373
>gi|24666434|ref|NP_524143.2| ftz transcription factor 1, isoform B [Drosophila melanogaster]
gi|45644987|sp|P33244.2|FTZF1_DROME RecName: Full=Nuclear hormone receptor FTZ-F1; AltName: Full=FTZ-F1
alpha; AltName: Full=Nuclear receptor subfamily 5 group A
member 3
gi|23093168|gb|AAF49231.2| ftz transcription factor 1, isoform B [Drosophila melanogaster]
gi|221307746|gb|ACM16732.1| LD15303p [Drosophila melanogaster]
Length = 1027
Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 106/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 854 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 913
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 914 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 973
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 974 YPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 1026
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 912 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 971
Query: 60 TAYPQI 65
T YP +
Sbjct: 972 TCYPSV 977
>gi|157126337|ref|XP_001654601.1| nuclear hormone receptor ftz-f1 (ftz-f1 alpha) [Aedes aegypti]
gi|108882573|gb|EAT46798.1| AAEL002062-PA [Aedes aegypti]
gi|156556069|emb|CAO79104.1| Ftz transcription factor [Aedes aegypti]
Length = 732
Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 560 FKDLKVDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLA 619
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
+ F ++ +KL ELKF
Sbjct: 620 EHFNELQNKLQELKFDVGDYICMKFLLLLNPEVRGITNRKTVVEGYENVQAALLDYTLTC 679
Query: 137 -PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF KL+SI+PE+H +A+RGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 680 YPSVPDKFSKLLSIIPEIHAMATRGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 732
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNP+VRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 631 ELKFDVGDYICMKFLLLLNPEVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 683
>gi|24666438|ref|NP_730359.1| ftz transcription factor 1, isoform A [Drosophila melanogaster]
gi|386771387|ref|NP_001246824.1| ftz transcription factor 1, isoform C [Drosophila melanogaster]
gi|23093169|gb|AAN11667.1| ftz transcription factor 1, isoform A [Drosophila melanogaster]
gi|383291999|gb|AFH04495.1| ftz transcription factor 1, isoform C [Drosophila melanogaster]
Length = 803
Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 106/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 630 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 689
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 690 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 749
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 750 YPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 802
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 688 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 747
Query: 60 TAYPQI 65
T YP +
Sbjct: 748 TCYPSV 753
>gi|158294557|ref|XP_556310.2| AGAP005661-PA [Anopheles gambiae str. PEST]
gi|157015618|gb|EAL39882.2| AGAP005661-PA [Anopheles gambiae str. PEST]
Length = 1099
Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 927 FKDLKVDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLA 986
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
+ F ++ +KL ELKF P+
Sbjct: 987 EHFNELQNKLQELKFDVGDYICMKFLLLLNPDVRGITNRKTVVEGYENVQAALLDYTLTC 1046
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+SI+PE+H +A+RGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 1047 YPSVPDKFSKLLSIIPEIHGMAARGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 1099
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNPDVRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 998 ELKFDVGDYICMKFLLLLNPDVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 1050
>gi|403182466|gb|EJY57405.1| AAEL002062-PB, partial [Aedes aegypti]
Length = 559
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 111/174 (63%), Gaps = 48/174 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 386 FKDLKVDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLA 445
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
+ F ++ +KL ELKF
Sbjct: 446 EHFNELQNKLQELKFDVGDYICMKFLLLLNPVEVRGITNRKTVVEGYENVQAALLDYTLT 505
Query: 137 --PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF KL+SI+PE+H +A+RGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 506 CYPSVPDKFSKLLSIIPEIHAMATRGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 559
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNP +VRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 457 ELKFDVGDYICMKFLLLLNPVEVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 510
>gi|8980871|gb|AAF82307.1|AF274870_1 nuclear receptor FTZ-F1 protein [Aedes aegypti]
Length = 840
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 111/174 (63%), Gaps = 48/174 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 667 FKDLKVDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLA 726
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
+ F ++ +KL ELKF
Sbjct: 727 EHFNELQNKLQELKFDVGDYICMKFLLLLNPVEVRGITNRKTVVEGYENVQAALLDYTLT 786
Query: 137 --PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
P+ DKF KL+SI+PE+H +A+RGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 787 CYPSVPDKFSKLLSIIPEIHAMATRGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 840
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNP +VRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 738 ELKFDVGDYICMKFLLLLNPVEVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 791
>gi|158294559|ref|XP_315680.4| AGAP005661-PB [Anopheles gambiae str. PEST]
gi|157015619|gb|EAA11812.4| AGAP005661-PB [Anopheles gambiae str. PEST]
Length = 715
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 111/173 (64%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 543 FKDLKVDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLA 602
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
+ F ++ +KL ELKF P+
Sbjct: 603 EHFNELQNKLQELKFDVGDYICMKFLLLLNPDVRGITNRKTVVEGYENVQAALLDYTLTC 662
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF KL+SI+PE+H +A+RGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 663 YPSVPDKFSKLLSIIPEIHGMAARGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 715
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNPDVRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 614 ELKFDVGDYICMKFLLLLNPDVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 666
>gi|321466618|gb|EFX77612.1| hypothetical protein DAPPUDRAFT_305379 [Daphnia pulex]
Length = 472
Score = 158 bits (400), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 108/173 (62%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQH+WSD+L+LDH+HQR+HN LPDE++L NGQKFDLLSL LLG P+L
Sbjct: 300 FKDLKVDDQMKLLQHAWSDLLILDHLHQRLHNHLPDESSLPNGQKFDLLSLSLLGCPSLA 359
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
+ VT +L+E++F NC
Sbjct: 360 EPLHDVTARLTEIRFDVPDYVCLKFLMLLNSDVKGLMNRRHVVEAQEQVQQALFDYTLNC 419
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF K+++ILP++H ++SRGEE+LY KH NG APTQTLLMEMLHAKRK
Sbjct: 420 YTHIPDKFAKMLAILPDIHAMSSRGEEYLYFKHLNGCAPTQTLLMEMLHAKRK 472
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 41/53 (77%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
E++FD+ DY+C+KFL+LLN DV+G++NR HV E EQVQ+AL DY + Y I
Sbjct: 371 EIRFDVPDYVCLKFLMLLNSDVKGLMNRRHVVEAQEQVQQALFDYTLNCYTHI 423
>gi|170058688|ref|XP_001865030.1| nuclear hormone receptor ftz-f1 [Culex quinquefasciatus]
gi|167877706|gb|EDS41089.1| nuclear hormone receptor ftz-f1 [Culex quinquefasciatus]
Length = 183
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 107/172 (62%), Gaps = 51/172 (29%)
Query: 67 VDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQ 126
VDDQMKLLQ+SWSDMLVLDH+HQR+HNALPD+TTLHNGQKFDLL LGLLGVP+L + F +
Sbjct: 12 VDDQMKLLQNSWSDMLVLDHIHQRLHNALPDDTTLHNGQKFDLLGLGLLGVPSLAEHFNE 71
Query: 127 VTHKLSELKFPNCD---------------------------------------------- 140
+ +KL ELKF D
Sbjct: 72 LQNKLQELKFDVGDYICMKFLLLLNPGKGADVRGITNRKTVIEGYENVQAALLDYTLTCY 131
Query: 141 -----KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
KF KL+SI+PE+H IASRGEEHLY KHC G AP+QTLLMEMLHAKRK
Sbjct: 132 PSVPDKFAKLLSIIPEIHVIASRGEEHLYIKHCAGSAPSQTLLMEMLHAKRK 183
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Query: 13 ELKFDISDYICVKFLLLLNP----DVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNP DVRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 78 ELKFDVGDYICMKFLLLLNPGKGADVRGITNRKTVIEGYENVQAALLDYTLTCYPSV 134
>gi|391332279|ref|XP_003740563.1| PREDICTED: nuclear hormone receptor FTZ-F1-like [Metaseiulus
occidentalis]
Length = 587
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 105/178 (58%), Gaps = 52/178 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ SWSDML+LDH+HQRMH+ LPDE L NGQKFDL+SL LLG+PT+
Sbjct: 409 FKELKVDDQMKLLQQSWSDMLILDHIHQRMHHNLPDEAGLPNGQKFDLVSLCLLGMPTMA 468
Query: 122 DRFTQVTHKLSELKF--------------------------------------------- 136
D+ VT KLS+L+F
Sbjct: 469 DQLHAVTQKLSDLRFDQVDYACLKFLMLLNPDPSSPEVRMLSNPRLVTDAQEQTKQVLLE 528
Query: 137 ------PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
PN DKF +LM+ILPE+ ++SRGEE LY KH NG APTQTLLMEMLH +R+
Sbjct: 529 YCTSNYPNIADKFSQLMAILPEIKAMSSRGEEFLYFKHVNGNAPTQTLLMEMLHTRRR 586
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 13 ELKFDISDYICVKFLLLLNPD-----VRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
+L+FD DY C+KFL+LLNPD VR + N V + EQ ++ LL+YC + YP I
Sbjct: 480 DLRFDQVDYACLKFLMLLNPDPSSPEVRMLSNPRLVTDAQEQTKQVLLEYCTSNYPNI 537
>gi|340780225|pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/173 (48%), Positives = 100/173 (57%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQ KLLQHSWSD LVLDH+H R+HN LPDET L+NGQ F+L SLGLLGVP L
Sbjct: 72 FKDLKVDDQXKLLQHSWSDXLVLDHLHHRIHNGLPDETQLNNGQVFNLXSLGLLGVPQLG 131
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 132 DYFNELQNKLQDLKFDXGDYVCXKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 191
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H A RGE+HLY KHC G APTQTLL E LHAKRK
Sbjct: 192 YPSVNDKFRGLVNILPEIHAXAVRGEDHLYTKHCAGSAPTQTLLXEXLHAKRK 244
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD DY+C KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 130 LGDYFNELQNKLQDLKFDXGDYVCXKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 189
Query: 60 TAYPQI 65
T YP +
Sbjct: 190 TCYPSV 195
>gi|194758286|ref|XP_001961393.1| GF11021 [Drosophila ananassae]
gi|190622691|gb|EDV38215.1| GF11021 [Drosophila ananassae]
Length = 165
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 96/164 (58%), Gaps = 47/164 (28%)
Query: 71 MKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHK 130
MKLLQHSWSD LVLDH+H R+HN LPDET L+NGQ F+LLSLGLLGVP L D F ++ +K
Sbjct: 1 MKLLQHSWSDKLVLDHLHHRIHNGLPDETQLNNGQVFNLLSLGLLGVPQLADYFNELQNK 60
Query: 131 LSELKFPNCD-----------------------------------------------KFG 143
L +LKF D KF
Sbjct: 61 LQDLKFDMGDYVCMKFLILLNPDVRGIVNRKTVSDGHDNVQAAMLDYTLTCYPSVTEKFR 120
Query: 144 KLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+L+ ILPE+H +A+RGEEHLY KH G APTQTLLMEMLHAKRK
Sbjct: 121 RLVIILPEIHAMAARGEEHLYTKHVAGSAPTQTLLMEMLHAKRK 164
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+ +Y+ +L+ LKFD+ DY+C+KFL+LLNPDVRGI+NR V +GH+ VQ A+LDY +
Sbjct: 50 LADYFNELQNKLQDLKFDMGDYVCMKFLILLNPDVRGIVNRKTVSDGHDNVQAAMLDYTL 109
Query: 60 TAYPQI 65
T YP +
Sbjct: 110 TCYPSV 115
>gi|5306097|gb|AAD41899.1| fushi tarazu-factor 1 [Metapenaeus ensis]
Length = 545
Score = 139 bits (350), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 99/177 (55%), Gaps = 51/177 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSD+L+LDH+HQR+HN L DETTL NGQKFDLLSL LLG
Sbjct: 330 FKDLKVDDQMKLLQHSWSDLLILDHLHQRIHNRLQDETTLPNGQKFDLLSLALLGTTQFA 389
Query: 122 DRFTQVTHKLSELKFP----NCDKF----------------------------------- 142
DRF + +KL +L F C KF
Sbjct: 390 DRFHAILNKLRDLNFDISDFVCVKFIILLNPDSIADVRLLSDRRAVIAARPGATGIDGIY 449
Query: 143 ------------GKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
KLM +LPELH +A GE++LY+KH NG APTQTLLMEMLH +++
Sbjct: 450 SQCLPRVSSGEIQKLMDLLPELHFLAENGEKYLYYKHINGAAPTQTLLMEMLHNQKE 506
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 20/21 (95%)
Query: 13 ELKFDISDYICVKFLLLLNPD 33
+L FDISD++CVKF++LLNPD
Sbjct: 401 DLNFDISDFVCVKFIILLNPD 421
>gi|427778305|gb|JAA54604.1| Putative ftz transcription factor 1 [Rhipicephalus pulchellus]
Length = 469
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 103/170 (60%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ SWSDML+LDH+HQR+HN LPD+TTL NGQKF L+SL LLG+P L D+
Sbjct: 274 LRVDDQMKLLQQSWSDMLILDHVHQRLHNGLPDDTTLPNGQKFSLVSLALLGLPALADQL 333
Query: 125 TQVTHKLSELKF---------------PNC------------------------------ 139
+T +L EL+F P+
Sbjct: 334 HALTARLQELRFDPVDYVCLKFLLLLNPDVRTLSNVRLVHEAQEQTKQVHLEYCLSNYPQ 393
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFG+L +LP L I++RGEE+L++KH +G AP+QTLLMEMLHAK+K
Sbjct: 394 ISDKFGQLYQMLPSLKLISTRGEEYLFYKHMSGSAPSQTLLMEMLHAKKK 443
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI------- 65
EL+FD DY+C+KFLLLLNPDVR + N V E EQ ++ L+YC++ YPQI
Sbjct: 342 ELRFDPVDYVCLKFLLLLNPDVRTLSNVRLVHEAQEQTKQVHLEYCLSNYPQISDKFGQL 401
Query: 66 -QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTL 101
Q+ +KL+ + L H M + P +T L
Sbjct: 402 YQMLPSLKLISTRGEEYLFYKH----MSGSAPSQTLL 434
>gi|427778129|gb|JAA54516.1| Putative ftz transcription factor 1 [Rhipicephalus pulchellus]
Length = 470
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 103/170 (60%), Gaps = 47/170 (27%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ SWSDML+LDH+HQR+HN LPD+TTL NGQKF L+SL LLG+P L D+
Sbjct: 274 LRVDDQMKLLQQSWSDMLILDHVHQRLHNGLPDDTTLPNGQKFSLVSLALLGLPALADQL 333
Query: 125 TQVTHKLSELKF---------------PNC------------------------------ 139
+T +L EL+F P+
Sbjct: 334 HALTARLQELRFDPVDYVCLKFLLLLNPDVRTLSNVRLVHEAQEQTKQVHLEYCLSNYPQ 393
Query: 140 --DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFG+L +LP L I++RGEE+L++KH +G AP+QTLLMEMLHAK+K
Sbjct: 394 ISDKFGQLYQMLPSLKLISTRGEEYLFYKHMSGSAPSQTLLMEMLHAKKK 443
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI------- 65
EL+FD DY+C+KFLLLLNPDVR + N V E EQ ++ L+YC++ YPQI
Sbjct: 342 ELRFDPVDYVCLKFLLLLNPDVRTLSNVRLVHEAQEQTKQVHLEYCLSNYPQISDKFGQL 401
Query: 66 -QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTL 101
Q+ +KL+ + L H M + P +T L
Sbjct: 402 YQMLPSLKLISTRGEEYLFYKH----MSGSAPSQTLL 434
>gi|433191|dbj|BAA01745.1| BmFTZ-F1 protein [Bombyx mori]
Length = 555
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 78/100 (78%), Gaps = 6/100 (6%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ SWS MLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 361 FKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLA 420
Query: 122 DRFTQVTHKLSELKF--PN--CDKFGKLMSILPELHEIAS 157
D F ++ +KL+ELKF P+ C KF L++ PE+ I +
Sbjct: 421 DHFNELQNKLAELKFDVPDYICVKFMLLLN--PEVRGIVN 458
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
ELKFD+ DYICVKF+LLLNP+VRGI+N V EG++ VQ ALLDY
Sbjct: 432 ELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDY 476
>gi|241571821|ref|XP_002402946.1| nuclear hormone receptor FTZ-F1, putative [Ixodes scapularis]
gi|215500160|gb|EEC09654.1| nuclear hormone receptor FTZ-F1, putative [Ixodes scapularis]
Length = 224
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 101/200 (50%), Gaps = 59/200 (29%)
Query: 46 GHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ 105
G V +L C T + + VDDQMKLLQ SWSDML+LDH+HQR+HN LPD+TTL NGQ
Sbjct: 26 GRIDVPDSLATSCPT-FCVLNVDDQMKLLQQSWSDMLILDHLHQRLHNGLPDDTTLPNGQ 84
Query: 106 KFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCDKF--GKLMSI--------LPELHEI 155
KF L+SL +LG+ +L D+ +L EL+F D F G + L E+ E+
Sbjct: 85 KFSLVSLAVLGLTSLADQLHHFVQQLQELRFDAIDYFQEGSTTQVLCCMHSSHLAEMGEV 144
Query: 156 ASRG------------------------------------------------EEHLYHKH 167
+ G EE+L++KH
Sbjct: 145 RTLGNVRLVHEAQEQTKQVHLEYCLNNYPQMTDKFGQLYQMLPSLKLISTRGEEYLFYKH 204
Query: 168 CNGGAPTQTLLMEMLHAKRK 187
+G AP+QTLLMEMLHAK+K
Sbjct: 205 MSGSAPSQTLLMEMLHAKKK 224
>gi|304811|gb|AAA28915.1| steroid receptor beta FTZ-F1 [Drosophila melanogaster]
Length = 816
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 84/149 (56%), Gaps = 47/149 (31%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP
Sbjct: 630 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQPG 689
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 690 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 749
Query: 140 -----DKFGKLMSILPELHEIASRGEEHL 163
DKF L++ILPE+H +A RGE+HL
Sbjct: 750 YPSVNDKFRGLVNILPEIHAMAVRGEDHL 778
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 2 GNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCIT 60
G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +T
Sbjct: 689 GDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLT 748
Query: 61 AYPQI 65
YP +
Sbjct: 749 CYPSV 753
>gi|157458|gb|AAA28542.1| FTZ-F1 [Drosophila melanogaster]
Length = 1043
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 84/149 (56%), Gaps = 47/149 (31%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP
Sbjct: 857 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQPG 916
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 917 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 976
Query: 140 -----DKFGKLMSILPELHEIASRGEEHL 163
DKF L++ILPE+H +A RGE+HL
Sbjct: 977 YPSVNDKFRGLVNILPEIHAMAVRGEDHL 1005
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 2 GNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCIT 60
G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +T
Sbjct: 916 GDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLT 975
Query: 61 AYPQI 65
YP +
Sbjct: 976 CYPSV 980
>gi|195352228|ref|XP_002042616.1| GM14921 [Drosophila sechellia]
gi|194124500|gb|EDW46543.1| GM14921 [Drosophila sechellia]
Length = 974
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 63/75 (84%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 850 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 909
Query: 122 DRFTQVTHKLSELKF 136
D F ++ +KL +LKF
Sbjct: 910 DYFNELQNKLQDLKF 924
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRG 36
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRG
Sbjct: 908 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRG 944
>gi|312372174|gb|EFR20190.1| hypothetical protein AND_20496 [Anopheles darlingi]
Length = 164
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 75/96 (78%), Gaps = 6/96 (6%)
Query: 67 VDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQ 126
VDDQMKLLQ+SWSDMLVLDH+HQR+HN LPDETTLHNGQKFDLL LGLLGVP+L + F +
Sbjct: 7 VDDQMKLLQNSWSDMLVLDHIHQRLHNGLPDETTLHNGQKFDLLGLGLLGVPSLAEHFNE 66
Query: 127 VTHKLSELKFPN----CDKFGKLMSILPELHEIASR 158
+ +KL ELKF C KF L+ + P++ I +R
Sbjct: 67 LQNKLQELKFDVGDYICMKF--LLLLNPDVRGITNR 100
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELKFD+ DYIC+KFLLLLNPDVRGI NR V EG+E VQ ALLDY +T YP +
Sbjct: 73 ELKFDVGDYICMKFLLLLNPDVRGITNRKTVVEGYENVQAALLDYTLTCYPSV 125
>gi|259013275|ref|NP_001158442.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
gi|197320551|gb|ACH68437.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
Length = 475
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 96/184 (52%), Gaps = 50/184 (27%)
Query: 53 ALLDYCITA--YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL 110
A +D+ + + ++V+DQMKLLQ++WS++LV+D ++++ + + +E L G+ D+
Sbjct: 293 AFVDWARNSMFFKDLKVEDQMKLLQNAWSELLVIDQCYRQVESNV-EEMILVTGEVLDVA 351
Query: 111 SLGLLGVPTLRDRFTQVTHKLSELK----------------------------------- 135
L + G+ + DR T++ ++ ELK
Sbjct: 352 KLRMYGLGDIVDRMTEIIKRMKELKMDRKEFMCLKFLLLLNPDVPGLQDNHAIRQFQEQI 411
Query: 136 -----------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLH 183
+P +KFG+L+ LPE+ +I+ +GEE+LY+KH +G P +LLMEMLH
Sbjct: 412 HAALLDYTMSNYPEVTEKFGQLLLRLPEIRQISLQGEEYLYYKHLSGEVPYNSLLMEMLH 471
Query: 184 AKRK 187
+KRK
Sbjct: 472 SKRK 475
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
ELK D +++C+KFLLLLNPDV G+ + + + EQ+ ALLDY ++ YP++
Sbjct: 374 ELKMDRKEFMCLKFLLLLNPDVPGLQDNHAIRQFQEQIHAALLDYTMSNYPEV 426
>gi|405972025|gb|EKC36822.1| Nuclear receptor subfamily 5 group A member 2 [Crassostrea gigas]
Length = 540
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++V+DQMKLLQ+ WS++L+LD +H+ + E TL NG+K L L LG+ +
Sbjct: 368 FKDLKVEDQMKLLQNCWSEILILDLVHRLVRETWSGEVTLLNGKKLTLDCLDKLGLSAAK 427
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + K+ ELK
Sbjct: 428 ESIFDLVRKMKELKIDVNEYLCLKFLILLNPDVPGLENRQAVENSQEKVNSALMEYCVNF 487
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+P+ DKFG+++ LPE+ I+ EE LY+KH NG P QTLL+EMLH+K+K
Sbjct: 488 YPHLKDKFGQVLLRLPEVRLISMHAEEFLYYKHLNGEIPDQTLLIEMLHSKKK 540
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 41/54 (75%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELK D+++Y+C+KFL+LLNPDV G+ NR VE E+V AL++YC+ YP ++
Sbjct: 439 ELKIDVNEYLCLKFLILLNPDVPGLENRQAVENSQEKVNSALMEYCVNFYPHLK 492
>gi|72094401|ref|XP_791919.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 487
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 50/189 (26%)
Query: 48 EQVQKALLDYCITA--YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ 105
+Q A +D+ + + +++V+DQMKLLQ+SWS++L+ DH+++++H+ + + G
Sbjct: 300 DQTLFAFVDWARNSLFFKELKVEDQMKLLQNSWSELLLFDHLYRQIHHH-GEGVLMITGH 358
Query: 106 KFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN--------------------------- 138
D +L +G + D+ + ++ ELK +
Sbjct: 359 TLDQATLSHMGPADVIDQMGNIVMRMRELKLDHKDYVCLKFMILLNPGIVALHDKHIIDG 418
Query: 139 --------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
DKF ++ +LPE+ +I+ R EE+LY+KH NG P +LL
Sbjct: 419 CQDQISAALLEHTMTAYTNVSDKFRLMLRLLPEIRQISQRAEEYLYYKHLNGEVPYNSLL 478
Query: 179 MEMLHAKRK 187
MEMLH+KRK
Sbjct: 479 MEMLHSKRK 487
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1 MGNYYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCIT 60
MGN R ELK D DY+C+KF++LLNP + + ++ ++ +Q+ ALL++ +T
Sbjct: 377 MGNIVMRMR---ELKLDHKDYVCLKFMILLNPGIVALHDKHIIDGCQDQISAALLEHTMT 433
Query: 61 AYPQIQVDDQMKLL 74
AY V D+ +L+
Sbjct: 434 AY--TNVSDKFRLM 445
>gi|390356378|ref|XP_003728766.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 522
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 50/189 (26%)
Query: 48 EQVQKALLDYCITA--YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ 105
+Q A +D+ + + +++V+DQMKLLQ+SWS++L+ DH+++++H+ + + G
Sbjct: 335 DQTLFAFVDWARNSLFFKELKVEDQMKLLQNSWSELLLFDHLYRQIHHH-GEGVLMITGH 393
Query: 106 KFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN--------------------------- 138
D +L +G + D+ + ++ ELK +
Sbjct: 394 TLDQATLSHMGPADVIDQMGNIVMRMRELKLDHKDYVCLKFMILLNPGIVALHDKHIIDG 453
Query: 139 --------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
DKF ++ +LPE+ +I+ R EE+LY+KH NG P +LL
Sbjct: 454 CQDQISAALLEHTMTAYTNVSDKFRLMLRLLPEIRQISQRAEEYLYYKHLNGEVPYNSLL 513
Query: 179 MEMLHAKRK 187
MEMLH+KRK
Sbjct: 514 MEMLHSKRK 522
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 1 MGNYYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCIT 60
MGN R ELK D DY+C+KF++LLNP + + ++ ++ +Q+ ALL++ +T
Sbjct: 412 MGNIVMRMR---ELKLDHKDYVCLKFMILLNPGIVALHDKHIIDGCQDQISAALLEHTMT 468
Query: 61 AYPQIQVDDQMKLL 74
AY V D+ +L+
Sbjct: 469 AY--TNVSDKFRLM 480
>gi|443694950|gb|ELT95968.1| hypothetical protein CAPTEDRAFT_186691 [Capitella teleta]
Length = 486
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 49/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-HNALPDETTLHNGQKFDLLSLGLLGVPTL 120
+ Q +V+DQMKLLQ+ WS++L+LD + ++M HN L D+ + G D+ L +G+ +
Sbjct: 314 FKQHKVEDQMKLLQNCWSELLILDFVFKQMSHNKL-DQLRMITGHLVDIQILERMGLEDI 372
Query: 121 RDRFTQVTHKLSELK--------------------------------------------- 135
++R + K ELK
Sbjct: 373 KERLVDIIVKFRELKLDANEFTCLKFLILLNPDVSGLTYRQQLEQNQEKVNAAMLEYCST 432
Query: 136 -FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+P DKFG+L+ LPE+ ++ R E++LY++H NG P TLLMEMLH+KRK
Sbjct: 433 FYPGIRDKFGQLLVRLPEIRLMSLRIEDYLYYQHMNGNIPENTLLMEMLHSKRK 486
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELK D +++ C+KFL+LLNPDV G+ R +E+ E+V A+L+YC T YP I+
Sbjct: 385 ELKLDANEFTCLKFLILLNPDVSGLTYRQQLEQNQEKVNAAMLEYCSTFYPGIR 438
>gi|348577961|ref|XP_003474752.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Cavia porcellus]
Length = 863
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 688 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 747
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +++L+
Sbjct: 748 NLMSHAQELVAKLRSIQLDQREFVCLKFLVLFSVDVKNLENFQLVEGVQEQVNSALLDYT 807
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 808 LCNYPQQAEKFGQLLCGLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 862
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 763 IQLDQREFVCLKFLVLFSVDVKNLENFQLVEGVQEQVNSALLDYTLCNYPQ 813
>gi|449507916|ref|XP_002193005.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Taeniopygia guttata]
Length = 501
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSILLVTGQQVDYSVIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 401 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>gi|326924950|ref|XP_003208685.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Meleagris gallopavo]
Length = 495
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSILLVTGQQVDYSVIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 494
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 394 SLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQ 452
Query: 73 LL 74
LL
Sbjct: 453 LL 454
>gi|395531065|ref|XP_003767603.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Sarcophilus harrisii]
Length = 502
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 327 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 386
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 387 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 446
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 447 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 501
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 402 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 460
Query: 74 L 74
L
Sbjct: 461 L 461
>gi|15145791|gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio]
gi|190340123|gb|AAI63522.1| Nr5a2 protein [Danio rerio]
Length = 517
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 342 FRELKVDDQMKLLQNCWSELLILDHVFRQVMHAKEGSILLVTGQQVDYALIASQAGATLN 401
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +S+L+
Sbjct: 402 NLLSHAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 461
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 462 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 516
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 417 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 475
Query: 74 L 74
L
Sbjct: 476 L 476
>gi|449268136|gb|EMC79006.1| Nuclear receptor subfamily 5 group A member 2 [Columba livia]
Length = 501
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSILLVTGQQVDYSIIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 401 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>gi|327277808|ref|XP_003223655.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Anolis carolinensis]
Length = 855
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 680 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSILLVTGQQVDYSVIASQAGATLN 739
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 740 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 799
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 800 MCNYPQQTDKFGQLLLRLPEIRGISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 854
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 755 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 813
Query: 74 L 74
L
Sbjct: 814 L 814
>gi|348523091|ref|XP_003449057.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oreochromis niloticus]
Length = 521
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 346 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDYAVIASQAGATLN 405
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +++L+
Sbjct: 406 NLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 465
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 466 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 520
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 421 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 479
Query: 74 L 74
L
Sbjct: 480 L 480
>gi|218683821|gb|ACL00865.1| steroidogenic factor 1 [Kryptolebias marmoratus]
Length = 524
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 349 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDYAVIASQAGATLN 408
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +++L+
Sbjct: 409 NLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 468
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 469 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 523
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 424 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 482
Query: 74 L 74
L
Sbjct: 483 L 483
>gi|334321860|ref|XP_001377433.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Monodelphis domestica]
Length = 542
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 367 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 426
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 427 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 486
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 487 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 541
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 442 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 500
Query: 74 L 74
L
Sbjct: 501 L 501
>gi|67463981|pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 70 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 129
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 130 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 189
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 190 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 244
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 145 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 195
>gi|194592436|gb|ACF76563.1| LRH-1 [Tachysurus fulvidraco]
Length = 500
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 325 FRELKVDDQMKLLQNCWSELLILDHIFRQVIHTKEGSILLVTGQQMDYALIASQAGATLN 384
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ ++ +S+L+
Sbjct: 385 NLLSRAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 444
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 445 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 499
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 400 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 458
Query: 74 L 74
L
Sbjct: 459 L 459
>gi|61680816|pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|61680817|pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|384482483|pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
gi|384482484|pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 80 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 139
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 140 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 199
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 200 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 254
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 155 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 205
>gi|157278393|ref|NP_001098298.1| LRH-1 [Oryzias latipes]
gi|74273322|gb|ABA01329.1| LRH-1 [Oryzias latipes]
Length = 523
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 348 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDFGVIASQAGATLN 407
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +++L+
Sbjct: 408 NLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 467
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 468 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 522
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 423 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 481
Query: 74 L 74
L
Sbjct: 482 L 482
>gi|185132297|ref|NP_001117708.1| FTZ-F1 related protein [Oncorhynchus mykiss]
gi|84469418|dbj|BAE71417.1| FTZ-F1 related protein [Oncorhynchus mykiss]
Length = 512
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + + TL
Sbjct: 337 FRELKVDDQMKLLQNCWSELLILDHIFRQVMHAKEGSILLVTGQQVDYVVIASQAGATLN 396
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + + +L+
Sbjct: 397 NLMSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 456
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 457 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 511
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 411 SLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQ 469
Query: 73 LL 74
LL
Sbjct: 470 LL 471
>gi|94959279|gb|ABF47516.1| steroidogenic factor 1 [Odontesthes hatcheri]
Length = 492
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 317 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDYAMIASQAGATLN 376
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + ++ L+
Sbjct: 377 NLLSHAQELVTRLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 436
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 437 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 491
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 391 SLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQ 449
Query: 73 LL 74
LL
Sbjct: 450 LL 451
>gi|73535702|pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 81 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 140
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 141 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 200
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 201 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 255
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 156 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 206
>gi|345306365|ref|XP_001505652.2| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Ornithorhynchus anatinus]
Length = 659
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 484 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYAVIAAQAGATLN 543
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ ++ KL L+F
Sbjct: 544 SLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYI 603
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 604 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 658
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 558 SLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYIMCNYPQ-QTDKFGQ 616
Query: 73 LL 74
LL
Sbjct: 617 LL 618
>gi|327200627|pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
gi|327200629|pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 82 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 141
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 142 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 201
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 202 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 256
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 157 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 207
>gi|86620853|gb|AAP84609.2| steroidogenic factor 1 [Odontesthes bonariensis]
Length = 503
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 328 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDYAMIASQAGATLN 387
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + ++ L+
Sbjct: 388 NLLSHAQELVTRLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 447
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 448 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 502
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 402 SLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQ 460
Query: 73 LL 74
LL
Sbjct: 461 LL 462
>gi|410921718|ref|XP_003974330.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Takifugu rubripes]
Length = 525
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 350 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDFGVIASQAGATLN 409
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + + +L+
Sbjct: 410 NLLSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 469
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 470 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 524
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 425 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 483
Query: 74 L 74
L
Sbjct: 484 L 484
>gi|410921720|ref|XP_003974331.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Takifugu rubripes]
Length = 525
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 350 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDFGVIASQAGATLN 409
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + + +L+
Sbjct: 410 NLLSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 469
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 470 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 524
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 425 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 483
Query: 74 L 74
L
Sbjct: 484 L 484
>gi|45384182|ref|NP_990409.1| nuclear receptor subfamily 5 group A member 2 [Gallus gallus]
gi|3334187|sp|O42101.1|NR5A2_CHICK RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTF/LRH-1; AltName: Full=OR2.0
gi|2541858|dbj|BAA22838.1| FTF/LRH-1 [Gallus gallus]
Length = 501
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHVKEGSILLVTGQQVDYSVIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYCKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 401 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>gi|403294672|ref|XP_003938293.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Saimiri boliviensis boliviensis]
Length = 495
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYCMIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 VCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 445
>gi|403294674|ref|XP_003938294.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 3 [Saimiri boliviensis boliviensis]
Length = 501
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYCMIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 VCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 451
>gi|345803057|ref|XP_547371.3| PREDICTED: nuclear receptor subfamily 5 group A member 2 [Canis
lupus familiaris]
Length = 469
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 294 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 353
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 354 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 413
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 414 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 468
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 369 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 419
>gi|403294670|ref|XP_003938292.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Saimiri boliviensis boliviensis]
Length = 541
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYCMIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 VCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 491
>gi|1947098|gb|AAD03155.1| alpha1-fetoprotein transcription factor [Homo sapiens]
Length = 500
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 325 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 384
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 385 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 444
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 445 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 499
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 400 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 450
>gi|395838917|ref|XP_003792352.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Otolemur garnettii]
Length = 495
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|451172094|ref|NP_001263393.1| nuclear receptor subfamily 5 group A member 2 isoform 3 [Homo
sapiens]
gi|194385660|dbj|BAG65205.1| unnamed protein product [Homo sapiens]
gi|221040206|dbj|BAH14884.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 294 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 353
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 354 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 413
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 414 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 468
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 369 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 419
>gi|296230345|ref|XP_002760663.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Callithrix jacchus]
Length = 495
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSMIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|7416833|dbj|BAA94078.1| FTZ-F1 beta [Glandirana rugosa]
Length = 469
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 294 FRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDFSVIVSQAGTTLN 353
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 354 NLMSHAQELVAKLRSLQFDMREFVCLKFLVLFSLDVKNLENFQLVEGVQEQINAALLDYT 413
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 414 LCYYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 468
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQ+ ALLDY + YPQ Q D +
Sbjct: 368 SLQFDMREFVCLKFLVLFSLDVKNLENFQLVEGVQEQINAALLDYTLCYYPQ-QTDKFGQ 426
Query: 73 LL 74
LL
Sbjct: 427 LL 428
>gi|361131805|pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 177 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 236
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 237 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 296
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 297 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 351
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 252 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 302
>gi|194385626|dbj|BAG65188.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 451
>gi|390477376|ref|XP_003735285.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Callithrix jacchus]
Length = 501
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSMIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 451
>gi|4504343|ref|NP_003813.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Homo
sapiens]
gi|114571712|ref|XP_525014.2| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan troglodytes]
gi|397505096|ref|XP_003823110.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan paniscus]
gi|402857721|ref|XP_003893394.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Papio anubis]
gi|426333172|ref|XP_004028158.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Gorilla gorilla gorilla]
gi|5002242|gb|AAD37378.1|AF146343_1 CYP7A promoter binding factor [Homo sapiens]
gi|10441619|gb|AAG17124.1|AF190464_1 hepatocytic transcription factor B1F [Homo sapiens]
gi|3916048|gb|AAC78727.1| hepatocytic transcription factor [Homo sapiens]
gi|110002573|gb|AAI18653.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|110002615|gb|AAI18572.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|119611712|gb|EAW91306.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Homo sapiens]
gi|307685609|dbj|BAJ20735.1| nuclear receptor subfamily 5, group A, member 2 [synthetic
construct]
gi|325495525|gb|ADZ17368.1| liver nuclear receptor homolog-1 variant 2 [Homo sapiens]
Length = 495
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|410986212|ref|XP_004001611.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Felis catus]
Length = 495
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|355746061|gb|EHH50686.1| hypothetical protein EGM_01552 [Macaca fascicularis]
Length = 513
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 338 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 397
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 398 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 457
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 458 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 512
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 413 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 463
>gi|397505098|ref|XP_003823111.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 3
[Pan paniscus]
Length = 501
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 451
>gi|216409746|dbj|BAH02310.1| nuclear receptor subfamily 5, group A [Homo sapiens]
Length = 501
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 451
>gi|126352552|ref|NP_001075264.1| nuclear receptor subfamily 5 group A member 2 [Equus caballus]
gi|11493783|gb|AAG35649.1|AF203913_1 steroidogenic factor 2 [Equus caballus]
Length = 495
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|350537337|ref|NP_001233209.1| nuclear receptor subfamily 5 group A member 2 [Ovis aries]
gi|339958758|gb|AEK25127.1| nuclear receptor subfamily 5 group A member 2 [Ovis aries]
gi|353025422|gb|AEQ61833.1| liver receptor-like protein [Ovis aries]
Length = 495
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLS 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ ++ KL L+F
Sbjct: 380 SLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENSQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 VCNYPQQAEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENSQLVEGVQEQVNAALLDYTVCNYPQ 445
>gi|392583958|ref|NP_001254822.1| nuclear receptor subfamily 5 group A member 2 [Sus scrofa]
gi|380710168|gb|AFD98843.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Sus
scrofa]
Length = 443
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 268 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGTTLN 327
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 328 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 387
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 388 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 343 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 393
>gi|281351212|gb|EFB26796.1| hypothetical protein PANDA_002579 [Ailuropoda melanoleuca]
Length = 520
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 345 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 404
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 405 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 464
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 465 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 519
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 420 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 470
>gi|380710166|gb|AFD98842.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Sus
scrofa]
Length = 495
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGTTLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|301757645|ref|XP_002914659.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Ailuropoda melanoleuca]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|7416831|dbj|BAA94077.1| FTZ-F1 alpha [Glandirana rugosa]
Length = 501
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDFSVIVSQAGTTLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDMREFVCLKFLVLFSLDVKNLENFQLVEGVQEQINAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 LCYYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQ+ ALLDY + YPQ Q D +L
Sbjct: 401 LQFDMREFVCLKFLVLFSLDVKNLENFQLVEGVQEQINAALLDYTLCYYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>gi|24158439|ref|NP_571538.1| nuclear receptor subfamily 5 group A member 2 [Danio rerio]
gi|2429328|gb|AAC60274.1| FTZ-F1 homolog [Danio rerio]
Length = 516
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ W ++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 341 FRELKVDDQMKLLQKCWRELLILDHVFRQVMHAKEGSILLVTGQQVDYALIASQAGATLN 400
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +S+L+
Sbjct: 401 NLLSHAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 460
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 461 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 515
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 416 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 474
Query: 74 L 74
L
Sbjct: 475 L 475
>gi|33358129|pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|33358130|pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|218766891|pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 73 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 132
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 133 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 192
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPEL I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 193 VCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 247
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 148 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 198
>gi|296230343|ref|XP_002760662.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Callithrix jacchus]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSMIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|297281162|ref|XP_002802036.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Macaca mulatta]
Length = 469
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 294 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 353
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 354 NLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 413
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 414 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 468
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 369 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 419
>gi|332230768|ref|XP_003264567.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Nomascus leucogenys]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQXVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQXVEGVQEQVNAALLDYTMCNYPQ 491
>gi|3810967|dbj|BAA34092.1| FTZ-F1 related protein [Homo sapiens]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|45545405|ref|NP_995582.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Homo
sapiens]
gi|114571710|ref|XP_001142695.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan troglodytes]
gi|397505094|ref|XP_003823109.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan paniscus]
gi|426333170|ref|XP_004028157.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Gorilla gorilla gorilla]
gi|7676156|sp|O00482.2|NR5A2_HUMAN RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Alpha-1-fetoprotein transcription factor;
AltName: Full=B1-binding factor; Short=hB1F; AltName:
Full=CYP7A promoter-binding factor; AltName:
Full=Hepatocytic transcription factor; AltName:
Full=Liver receptor homolog 1; Short=LRH-1
gi|4590402|gb|AAD26565.1|AF124247_1 hepatocytic transcription factor hB1F-2 [Homo sapiens]
gi|10441620|gb|AAG17125.1|AF190464_2 hepatocytic transcription factor isoform B1F-2 [Homo sapiens]
gi|119611714|gb|EAW91308.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_d
[Homo sapiens]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|402857719|ref|XP_003893393.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Papio anubis]
Length = 541
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|109018950|ref|XP_001110202.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Macaca mulatta]
Length = 495
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 445
>gi|395838915|ref|XP_003792351.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Otolemur garnettii]
Length = 541
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|355558912|gb|EHH15692.1| hypothetical protein EGK_01814 [Macaca mulatta]
Length = 540
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 365 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 424
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 425 NLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 484
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 485 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 539
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 440 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 490
>gi|451663|gb|AAA18357.1| Ftz-F1-related orphan receptor B, partial [Xenopus laevis]
Length = 468
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 293 FRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDYSVIVTQAGATLN 352
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + + KL L+F
Sbjct: 353 NLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENYQLVEGVQEQVNAALLDYI 412
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 413 MCHYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 467
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 367 SLQFDLREFVCLKFLVLFSLDVKNLENYQLVEGVQEQVNAALLDYIMCHYPQ-QTDKFGQ 425
Query: 73 LL 74
LL
Sbjct: 426 LL 427
>gi|73535941|pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
gi|73535942|pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 68 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 127
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 128 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 187
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 188 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 242
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 143 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 193
>gi|296478912|tpg|DAA21027.1| TPA: nuclear receptor subfamily 5, group A, member 2 isoform 2 [Bos
taurus]
Length = 495
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 320 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 379
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 380 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 439
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ ++ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 440 VCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 494
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 395 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 445
>gi|211907079|gb|ACJ12074.1| FTZ-F1 [Bombina orientalis]
Length = 380
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ D +++ +
Sbjct: 205 FRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSVLLVTGQHVDYSVIVTQAGATLN 264
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
TL + KL L+F
Sbjct: 265 TLMSHAQDLVSKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 324
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 325 LCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 379
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 279 SLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ-QTDKFGQ 337
Query: 73 LL 74
LL
Sbjct: 338 LL 339
>gi|109018948|ref|XP_001110281.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 3 [Macaca mulatta]
Length = 541
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|149058493|gb|EDM09650.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 293
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 118 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFN 177
Query: 109 -LLSLGLLGVPTLRD-----------RF---------------------TQVTHKLSELK 135
LLSL V LR +F QV L +
Sbjct: 178 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYT 237
Query: 136 FPN----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
N +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 238 LCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 292
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 193 LQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ 243
>gi|357575250|gb|AET85184.1| nuclear receptor subfamily 5 group A member 2 variant 2 [Cricetulus
barabensis]
Length = 501
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLGVP-- 118
+ +++VDDQMKLLQ+SWS++L+LDH+++++ L GQ D S+ GV
Sbjct: 326 FRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSPLLITGQHVDYASIVSEAGVTLS 385
Query: 119 ---------TLRDRFTQVTHK--------------------------------LSELKFP 137
LR R Q H+ + L++
Sbjct: 386 NLVSHSQELVLRFRSLQFDHREFVCLKFLVLFSLDVKNIENFQLVEGVQEQVNTALLEYT 445
Query: 138 NC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
C +K+G+L+ LPE+ I+ + EE+LY++H NG P LL+EMLHAKR
Sbjct: 446 VCNYPQQTEKYGQLLLRLPEIRAISVQAEEYLYYRHLNGDVPYNNLLIEMLHAKR 500
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ I N VE EQV ALL+Y + YPQ
Sbjct: 401 LQFDHREFVCLKFLVLFSLDVKNIENFQLVEGVQEQVNTALLEYTVCNYPQ 451
>gi|400270832|gb|AFP75245.1| nuclear receptor subfamily 5 group A member 2 [Tupaia belangeri]
Length = 541
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ ++ KL L+F
Sbjct: 426 SLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 VCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 491
>gi|58331857|ref|NP_001011100.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus (Silurana)
tropicalis]
gi|54038250|gb|AAH84495.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus (Silurana)
tropicalis]
Length = 501
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDYSVIVTQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + + KL L+F
Sbjct: 386 NLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENYQLVEGVQEQINAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQ+ ALLDY + YPQ Q D +L
Sbjct: 401 LQFDLREFVCLKFLVLFSLDVKNLENYQLVEGVQEQINAALLDYTMCNYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>gi|444717055|gb|ELW57891.1| Nuclear receptor subfamily 5 group A member 2 [Tupaia chinensis]
Length = 583
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ ++ KL L+F
Sbjct: 386 SLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 446 VCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 500
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 451
>gi|440900736|gb|ELR51807.1| Nuclear receptor subfamily 5 group A member 2 [Bos grunniens mutus]
Length = 536
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 361 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 420
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 421 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 480
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ ++ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 481 VCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 535
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 436 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 486
>gi|332205882|ref|NP_001193745.1| nuclear receptor subfamily 5 group A member 2 [Bos taurus]
gi|296478911|tpg|DAA21026.1| TPA: nuclear receptor subfamily 5, group A, member 2 isoform 1 [Bos
taurus]
Length = 541
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSVIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ ++ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 VCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQ 491
>gi|291402684|ref|XP_002717722.1| PREDICTED: nuclear receptor subfamily 5, group A, member 2
[Oryctolagus cuniculus]
Length = 541
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIYLVTGQQVDHSIIAAQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>gi|344277228|ref|XP_003410405.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Loxodonta africana]
Length = 702
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 50/173 (28%)
Query: 64 QIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDR 123
+++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL +
Sbjct: 529 ELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNL 588
Query: 124 FT---QVTHKLSELKF-------------------------------------------- 136
+ ++ KL L+F
Sbjct: 589 MSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMC 648
Query: 137 ---PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 649 NYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 701
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 602 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 652
>gi|213623458|gb|AAI69772.1| FTZ-F1-related nuclear orphan receptor variant [Xenopus laevis]
Length = 501
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 50/172 (29%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL +
Sbjct: 329 LKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDYSVIVTQAGATLNNLM 388
Query: 125 T---QVTHKLSELKF--------------------------------------------- 136
+ + KL L+F
Sbjct: 389 SHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCN 448
Query: 137 --PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 449 YPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 400 SLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQ 458
Query: 73 LL 74
LL
Sbjct: 459 LL 460
>gi|148229587|ref|NP_001081185.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus laevis]
gi|451661|gb|AAA18356.1| Ftz-F1-related orphan receptor A [Xenopus laevis]
Length = 501
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 50/172 (29%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL +
Sbjct: 329 LKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDYSVIVTQAGATLNNLM 388
Query: 125 T---QVTHKLSELKF--------------------------------------------- 136
+ + KL L+F
Sbjct: 389 SHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCN 448
Query: 137 --PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 449 YPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 400 SLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQ 458
Query: 73 LL 74
LL
Sbjct: 459 LL 460
>gi|213626636|gb|AAI69770.1| Xff1rashort protein [Xenopus laevis]
Length = 501
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 50/172 (29%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL +
Sbjct: 329 LKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVDYSVIVTQAGATLNNLM 388
Query: 125 T---QVTHKLSELKF--------------------------------------------- 136
+ + KL L+F
Sbjct: 389 SHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCN 448
Query: 137 --PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 449 YPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +
Sbjct: 400 SLQFDLREFVCLKFLVLFSLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQ 458
Query: 73 LL 74
LL
Sbjct: 459 LL 460
>gi|357575248|gb|AET85183.1| nuclear receptor subfamily 5 group A member 2 [Cricetulus
barabensis]
Length = 541
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLGVP-- 118
+ +++VDDQMKLLQ+SWS++L+LDH+++++ L GQ D S+ GV
Sbjct: 366 FRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSLLLITGQHVDYASIVSEAGVTLS 425
Query: 119 ---------TLRDRFTQVTHK--------------------------------LSELKFP 137
LR R Q H+ + L++
Sbjct: 426 NLVSHSQELVLRFRSLQFDHREFVCLKFLVRFSLDVKNIENFQLVEGVQEQVNTALLEYT 485
Query: 138 NC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
C +K+G+L+ LPE+ I+ + EE+LY++H NG P LL+EMLHAKR
Sbjct: 486 VCNYPQQTEKYGQLLLRLPEIRAISMQAEEYLYYRHLNGDVPYNNLLIEMLHAKR 540
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+ + DV+ I N VE EQV ALL+Y + YPQ
Sbjct: 441 LQFDHREFVCLKFLVRFSLDVKNIENFQLVEGVQEQVNTALLEYTVCNYPQ 491
>gi|45686253|gb|AAS75791.1| FTZ-F1 [Acanthopagrus schlegelii]
Length = 520
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 50/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL
Sbjct: 348 FRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSILLVTGQQVDYAVIASQAGATLN 407
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
+ + +++L+
Sbjct: 408 NLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYV 467
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+P DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHA
Sbjct: 468 MCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHA 520
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 423 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 481
Query: 74 L 74
L
Sbjct: 482 L 482
>gi|384482487|pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 50/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 70 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 129
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 130 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 189
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHA
Sbjct: 190 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHA 242
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 145 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 195
>gi|260802947|ref|XP_002596353.1| hypothetical protein BRAFLDRAFT_215489 [Branchiostoma floridae]
gi|229281608|gb|EEN52365.1| hypothetical protein BRAFLDRAFT_215489 [Branchiostoma floridae]
Length = 445
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 49/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q++V+DQM LLQ+ WS++LVL+H+++R + D GQ+ ++ + LG +
Sbjct: 275 FSQLEVEDQMALLQNCWSELLVLEHLYRRAVSG-KDCLMTSQGQEINMSLIPSLGFGPM- 332
Query: 122 DRFTQVTHKLSELK---------------------------------------------- 135
D +V KL E K
Sbjct: 333 DCTAEVASKLREAKVDYLEYMCLKFLILFNTDVKGLVNRSMLEKFQEQINVALLDYTLCN 392
Query: 136 FP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+P D+FG+L+ LPE+ IA + EE +Y KH NG P+ TLLMEMLHAKR+
Sbjct: 393 YPEQNDRFGQLLLRLPEIRLIAVQAEELMYLKHLNGILPSATLLMEMLHAKRQ 445
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E K D +Y+C+KFL+L N DV+G++NR+ +E+ EQ+ ALLDY + YP+
Sbjct: 344 EAKVDYLEYMCLKFLILFNTDVKGLVNRSMLEKFQEQINVALLDYTLCNYPE 395
>gi|389620951|gb|AFK93862.1| nuclear receptor subfamily 5 group A member 2 [Sus scrofa]
Length = 501
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGTTLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH N P LL+EMLHAKR
Sbjct: 446 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNADVPYNNLLIEMLHAKR 500
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 401 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 451
>gi|148707596|gb|EDL39543.1| nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 451
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 276 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 335
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 336 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 395
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 396 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 450
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 351 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 401
>gi|229335598|ref|NP_001153241.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Mus
musculus]
gi|74100341|gb|AAZ99450.1| liver receptor-like protein 1 variant 2 [Mus musculus]
Length = 499
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 324 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 383
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 384 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 443
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 444 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 498
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 399 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 449
>gi|149058494|gb|EDM09651.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Rattus norvegicus]
Length = 499
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 324 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFN 383
Query: 109 -LLSLGLLGVPTLRD-----------RF---------------------TQVTHKLSELK 135
LLSL V LR +F QV L +
Sbjct: 384 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYT 443
Query: 136 FPN----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
N +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 444 LCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 498
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 399 LQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ 449
>gi|4107119|dbj|BAA36340.1| FTZ-F1 beta2 [Rattus norvegicus]
gi|149058495|gb|EDM09652.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_c
[Rattus norvegicus]
Length = 539
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 364 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFN 423
Query: 109 -LLSLGLLGVPTLRD-----------RF---------------------TQVTHKLSELK 135
LLSL V LR +F QV L +
Sbjct: 424 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYT 483
Query: 136 FPN----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
N +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 484 LCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 538
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 439 LQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ 489
>gi|14010847|ref|NP_109601.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Mus
musculus]
gi|7676159|sp|P45448.3|NR5A2_MOUSE RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Liver receptor homolog 1; Short=LRH-1
gi|198875|gb|AAA39447.1| liver receptor homologue [Mus musculus]
gi|223460988|gb|AAI37846.1| Nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 560
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 385 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 444
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 445 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 504
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 505 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 559
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 460 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 510
>gi|13492975|ref|NP_068510.1| nuclear receptor subfamily 5 group A member 2 [Rattus norvegicus]
gi|81907060|sp|Q9QWM1.1|NR5A2_RAT RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor
homolog 1; Short=LRH-1
gi|4107117|dbj|BAA36339.1| FTZ-F1 beta1 [Rattus norvegicus]
Length = 560
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 385 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFN 444
Query: 109 -LLSLGLLGVPTLRD-----------RF---------------------TQVTHKLSELK 135
LLSL V LR +F QV L +
Sbjct: 445 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYT 504
Query: 136 FPN----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
N +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 505 LCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 559
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 460 LQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ 510
>gi|47086369|ref|NP_997999.1| nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
gi|28916416|gb|AAO59489.1| Ff1d [Danio rerio]
gi|33468585|emb|CAE30391.1| novel protein similar to Carassius auratus nuclear hormone receptor
FTZ-F1 [Danio rerio]
gi|190336813|gb|AAI62260.1| Nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
gi|190339356|gb|AAI62252.1| Nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
Length = 502
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 54/177 (30%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS-LGLLGV--- 117
+ +++V DQMKLL + WS++LVLD++ +++H+ D L GQ+ +L S L GV
Sbjct: 325 FKELKVGDQMKLLHNCWSELLVLDYVARQLHHGKEDSVLLITGQEVELASLLAQAGVTLS 384
Query: 118 ------------------------------------------PTLRDRFTQVTHKLSEL- 134
P + + QV L E
Sbjct: 385 GMIQRGQELVQRLQELQLDRRETACLKYLILFNPDVKLLENQPYVESVYEQVNAALLEYT 444
Query: 135 -----KFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+FP D+F +++ LPEL ++S+ E++L +KH +G P LL+EMLHAKR
Sbjct: 445 LCAYPQFP--DRFSQILLRLPELRALSSQAEDYLCYKHLSGEVPCNNLLIEMLHAKR 499
>gi|291565556|dbj|BAI87836.1| steroidogenic factor 1 [Glandirana rugosa]
Length = 468
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQM LLQ+ WS++LV DH++++M ++ + L GQ+ +L ++ TL
Sbjct: 293 FKELEVSDQMILLQNCWSELLVFDHIYRQMQHSKENSILLVTGQEIELSAIAAQAGSTLN 352
Query: 121 -------------------RDRFT--------------------------QVTHKLSELK 135
R F +V L E
Sbjct: 353 NLVLRAQELVILLHSLQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVNSALMEYT 412
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DK+ L+ L E+ I+ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 413 MCHYPHCTDKYRLLLLRLAEIRSISMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 467
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + D + + N + + E+V AL++Y + YP D+ +L
Sbjct: 368 LQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVNSALMEYTMCHYP--HCTDKYRL 425
Query: 74 L 74
L
Sbjct: 426 L 426
>gi|4126870|dbj|BAA36789.1| SF-1/Ad4BP [Glandirana rugosa]
Length = 468
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQM LLQ+ WS++LV DH++++M ++ + L GQ+ +L ++ TL
Sbjct: 293 FKELEVSDQMILLQNCWSELLVFDHIYRQMQHSKENSILLVTGQEIELSAIAAQAGSTLN 352
Query: 121 -------------------RDRFT--------------------------QVTHKLSELK 135
R F +V L E
Sbjct: 353 NLVLRAQELVILLHSLQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVDSALMEYT 412
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DK+ L+ L E+ I+ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 413 MCHYPHCTDKYRLLLLRLAEIRSISMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 467
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + D + + N + + E+V AL++Y + YP D+ +L
Sbjct: 368 LQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVDSALMEYTMCHYP--HCTDKYRL 425
Query: 74 L 74
L
Sbjct: 426 L 426
>gi|22023902|gb|AAM89250.1|AF526537_1 FTZ-F1 [Carassius auratus]
Length = 503
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 54/177 (30%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS-LGLLGV--- 117
+ +++V DQMKLL + WS++LVLD++ +++H+ D L GQ+ +L S L GV
Sbjct: 326 FKELKVGDQMKLLHNCWSELLVLDYIARQLHHGKEDSVLLITGQEVELASLLAQAGVTLN 385
Query: 118 ------------------------------------------PTLRDRFTQVTHKLSEL- 134
P + + QV L E
Sbjct: 386 GMIQRGQELVHHLRELQLDRRETACLKYLILFNPDVKLLENQPYVESVYEQVNAALLEYT 445
Query: 135 -----KFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+FP D+F +++ LPEL ++++ E++L +KH +G P LL+EMLHAKR
Sbjct: 446 LCAYPQFP--DRFSQILLRLPELRALSTQAEDYLCYKHLSGEVPCNNLLIEMLHAKR 500
>gi|115334528|dbj|BAF33254.1| Ad4BP [Coturnix japonica]
Length = 466
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++ + L
Sbjct: 291 FKELEVGDQMKLLQNCWSELLVFDHLYRQLQHGKEHSVLLVTGQEVDLSAVAVQAGSILH 350
Query: 122 DRFTQV----------------------------------THKLSE-------------- 133
Q H L++
Sbjct: 351 SLVLQAQELVLHLHSLQVDRQEFVCLKFLILFSLDVKYLENHTLAKDAQEKANAALLEYT 410
Query: 134 -LKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 411 VCHYPHCTDKFRQLLLRLTEVRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 465
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N T ++ E+ ALL+Y + YP
Sbjct: 366 LQVDRQEFVCLKFLILFSLDVKYLENHTLAKDAQEKANAALLEYTVCHYP 415
>gi|334311611|ref|XP_001371703.2| PREDICTED: steroidogenic factor 1-like [Monodelphis domestica]
Length = 443
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 51/179 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
C+ + +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++
Sbjct: 265 CVV-FKELEVADQMKLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVDLATVAAQAG 323
Query: 118 PTLRD---RFTQVTHKLSELK--------------------------------------- 135
L R ++ +L L+
Sbjct: 324 SLLHSLVLRAQELVRQLHSLQVDKQEFVCLKFLILFSLDVKFLENHSLAKDAQEKANAAL 383
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + EE+LYHKH G P LL+EMLHAKR
Sbjct: 384 LDYTMCHYPHCGDKFRQLLLRLAEVRSLSMQAEEYLYHKHLGGEVPCNNLLIEMLHAKR 442
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALLDY + YP
Sbjct: 343 LQVDKQEFVCLKFLILFSLDVKFLENHSLAKDAQEKANAALLDYTMCHYP 392
>gi|224809509|ref|NP_001139213.1| nuclear receptor subfamily 5, group A, member 1 [Xenopus (Silurana)
tropicalis]
gi|223890060|dbj|BAH22851.1| steroidgenic factor 1 [Xenopus (Silurana) tropicalis]
Length = 468
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQM LLQ+ WS++LV DH++++M ++ + L GQ+ ++ ++ TL
Sbjct: 293 FKELEVSDQMILLQNCWSELLVFDHIYRQMQHSKENSILLVTGQEIEVSAISSQAGSTLN 352
Query: 121 -------------------RDRFT--------------------------QVTHKLSELK 135
R F +V+ L E
Sbjct: 353 NLILRAQELVIFLHSLQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVSTALLEYT 412
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DK+ L+ L E+ I+ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 413 MCHYPHCTDKYRSLLLRLAEIRSISMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 467
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + D + + N + + E+V ALL+Y + YP
Sbjct: 368 LQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVSTALLEYTMCHYP 417
>gi|44355486|gb|AAS47030.1| steroidogenic factor 1 [Pleurodeles waltl]
Length = 468
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQM LLQ+ WS++LV DH+++++ + + L GQ+ D+ ++ P L
Sbjct: 293 FKELEVGDQMILLQNCWSELLVFDHIYRQIQHGKENSILLVTGQEIDVSTIAAQAGPALN 352
Query: 121 ------------------------------------------------RDRFTQVTHKLS 132
+++ H+ +
Sbjct: 353 NLVLKSQELVIQLHSLQVDRQEFVCLKFLILFSVDEKCLENNTLARNAQEKINAALHEYT 412
Query: 133 ELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF L+ L ++ I+ E++LYHKH +G P LL+EMLHAKR
Sbjct: 413 MCHYPHCMDKFRLLLLRLTDIRSISMLAEDYLYHKHMSGEVPCNNLLIEMLHAKR 467
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + D + + N T E++ AL +Y + YP D+ +L
Sbjct: 368 LQVDRQEFVCLKFLILFSVDEKCLENNTLARNAQEKINAALHEYTMCHYPHCM--DKFRL 425
Query: 74 LQHSWSD-----MLVLDHM-HQRMHNALP 96
L +D ML D++ H+ M +P
Sbjct: 426 LLLRLTDIRSISMLAEDYLYHKHMSGEVP 454
>gi|157779744|gb|ABV71399.1| SF-1 [Cyprinus carpio]
Length = 503
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 54/177 (30%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS-LGLLGV--- 117
+ +++V DQMKLL + WS++LVLD++ +++H+ D L GQ+ +L S L GV
Sbjct: 326 FKELKVGDQMKLLHNCWSELLVLDYIARQLHHGKEDSVLLITGQEVELASLLAQAGVTLS 385
Query: 118 ------------------------------------------PTLRDRFTQVTHKLSEL- 134
P + + QV L E
Sbjct: 386 GMIQRGQELVNRLRELQLDRRETACLKYLILFNPDVKLLENQPCVESVYEQVNAALLEYT 445
Query: 135 -----KFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+FP D+F ++ LPEL ++++ E++L +KH +G P LL+EMLHAKR
Sbjct: 446 LCVYPQFP--DRFTQIQLRLPELRALSTQSEDYLCYKHLSGEVPCNNLLIEMLHAKR 500
>gi|432092297|gb|ELK24919.1| Nuclear receptor subfamily 5 group A member 2 [Myotis davidii]
Length = 417
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 50/170 (29%)
Query: 67 VDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFT- 125
VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL +
Sbjct: 247 VDDQMKLLQNCWSELLILDHLFRQVVHGKDGCIALVTGQQVDYSIIAAQAGATLGSLMSH 306
Query: 126 --QVTHKLSELKF----------------------------------------------- 136
+ KL L+F
Sbjct: 307 AQDLVAKLRSLQFDQREFVCLKFLVLFSLDVKSLENLQLVEGVQEQVHAALLDYTVCHYP 366
Query: 137 PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ ++ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 367 QQVEKFGQLLLRLPEIRALSLQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 416
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ QV+ +
Sbjct: 316 SLQFDQREFVCLKFLVLFSLDVKSLENLQLVEGVQEQVHAALLDYTVCHYPQ-QVEKFGQ 374
Query: 73 LL 74
LL
Sbjct: 375 LL 376
>gi|49036491|sp|Q95L87.1|STF1_MACEU RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Nuclear receptor subfamily 5 group A
member 1
gi|15290639|gb|AAK94918.1|AF401742_1 steroidogenic factor 1 [Macropus eugenii]
Length = 463
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 51/179 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG---- 113
C+ + +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++
Sbjct: 285 CVV-FKELEVADQMKLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVDLSTVAAQAG 343
Query: 114 -LLGVPTLRDR-FTQVTHKLS-----------------ELKF------------------ 136
LL LR + Q H L ++KF
Sbjct: 344 SLLHSLVLRAQDLVQQLHSLQVDRQEFVCLKFLILFSLDVKFLENHGLAKDAQEKANSAL 403
Query: 137 --------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + EE+LYHKH G P LL+EMLHAKR
Sbjct: 404 LEYTMCHYPHCGDKFRQLLLRLAEVRSLSMQAEEYLYHKHLGGEVPCNNLLIEMLHAKR 462
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N ++ E+ ALL+Y + YP
Sbjct: 363 LQVDRQEFVCLKFLILFSLDVKFLENHGLAKDAQEKANSALLEYTMCHYP 412
>gi|348535172|ref|XP_003455075.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Oreochromis niloticus]
gi|30089291|dbj|BAC75890.1| SF-1/Ad4BP [Oreochromis niloticus]
Length = 486
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ +A D L GQ+ +L S+ TL
Sbjct: 309 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHAKEDSILLVTGQEVELSSILSQAEGTLS 368
Query: 121 -----------RDRFTQVTHK-LSELKF-----PNC------------------------ 139
R R QV + ++ LKF PN
Sbjct: 369 SLVQRGQELAARLRVLQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNAALLEYT 428
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHAKR
Sbjct: 429 LSAYPQFQEKFSQLLVRLPELRSLSTQAEDYLCYMHVSGEVPCNNLLIEMLHAKR 483
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + N+ VE EQV ALL+Y ++AYPQ Q
Sbjct: 384 LQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNAALLEYTLSAYPQFQ 436
>gi|334265438|gb|AEG75297.1| fushi tarazu factor-1 [Oreochromis niloticus]
Length = 486
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ +A D L GQ+ +L S+ TL
Sbjct: 309 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHAKEDSILLVTGQEVELSSILSQAEGTLS 368
Query: 121 -----------RDRFTQVTHK-LSELKF-----PNC------------------------ 139
R R QV + ++ LKF PN
Sbjct: 369 SLVQRGQELAARLRVLQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNAALLEYT 428
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHAKR
Sbjct: 429 LSAYPQFQEKFSQLLVRLPELRSLSTQAEDYLCYMHVSGEVPCNNLLIEMLHAKR 483
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + N+ VE EQV ALL+Y ++AYPQ Q
Sbjct: 384 LQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNAALLEYTLSAYPQFQ 436
>gi|4586618|dbj|BAA76713.1| SF-1/Ad4BP [Gallus gallus]
Length = 466
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL------------ 109
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL
Sbjct: 291 FKELEVGDQMKLLQNCWSELLVFDHVYRQLQHGKEHSVLLVTGQEVDLSAVAAQAGSILH 350
Query: 110 --------LSLGLLGVPTLRDRFTQV--------------THKLSE-------------- 133
L L L + R F + H L++
Sbjct: 351 SLVLRAQELVLHLHSLQVDRQEFVCLKFLILFSLDVKYLENHALAKDAQEKANAALLEYT 410
Query: 134 -LKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 411 VCHYPHCTDKFRQLLLRLTEVRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 465
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N ++ E+ ALL+Y + YP
Sbjct: 366 LQVDRQEFVCLKFLILFSLDVKYLENHALAKDAQEKANAALLEYTVCHYP 415
>gi|157278133|ref|NP_001098166.1| FTZ-F1 [Oryzias latipes]
gi|3426019|dbj|BAA32394.1| FTZ-F1 [Oryzias latipes]
Length = 486
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ + D L GQ+ L S+ G TL
Sbjct: 309 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHGKEDSILLVTGQEVQLSSILSQGEATLC 368
Query: 121 -----------RDRFTQVTHK-LSELKF-----PNC------------------------ 139
R R QV + ++ LKF PN
Sbjct: 369 SLVQRGQELAARLRALQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNGALLEYT 428
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHAKR
Sbjct: 429 LTTYPQFQEKFSQLVVRLPELRSLSTQAEDYLCYMHLSGEVPCNNLLIEMLHAKR 483
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + N+ VE EQV ALL+Y +T YPQ Q
Sbjct: 384 LQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNGALLEYTLTTYPQFQ 436
>gi|115529250|ref|NP_001070160.1| steroidogenic factor 1 [Taeniopygia guttata]
gi|15426034|gb|AAK97659.1|AF407573_1 steroidogenic factor 1 [Taeniopygia guttata]
Length = 466
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ D+ ++ +L
Sbjct: 291 FKELEVGDQMKLLQNCWSELLVFDHIYRQLQHGKEHSVLLVTGQEVDMSAIAAQAGSILN 350
Query: 117 VPTLR-------------DRFTQV----------------THKLSE----------LKFP 137
LR DR V H L++ L++
Sbjct: 351 TLVLRAQELVLHLHSLQVDRHEFVCLKFLILFSLDVKYLENHTLAKDAQEKANAALLEYT 410
Query: 138 NC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 411 VCHYPHSTDKFRQLLLWLAEVRALSLQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 465
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N T ++ E+ ALL+Y + YP
Sbjct: 366 LQVDRHEFVCLKFLILFSLDVKYLENHTLAKDAQEKANAALLEYTVCHYP 415
>gi|148224522|ref|NP_001091438.1| nuclear receptor subfamily 5, group A, member 1 [Xenopus laevis]
gi|139002550|dbj|BAF52036.1| steroidogenic factor 1 [Xenopus laevis]
Length = 468
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQ+ LLQ+ WS++LV DH++++M ++ + L GQ+ ++ ++ TL
Sbjct: 293 FKELEVSDQVILLQNCWSELLVFDHIYRQMQHSKENSILLVTGQEIEVSAISSQAGSTLN 352
Query: 121 -------------------RDRFT--------------------------QVTHKLSELK 135
R F +V+ L E
Sbjct: 353 NLILRAQELVIVLHSLQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVSSALLEYT 412
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DK+ L+ L E+ I+ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 413 MCHYPHCTDKYRMLLVRLAEIRSISMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 467
Score = 39.7 bits (91), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + D + + N + + E+V ALL+Y + YP
Sbjct: 368 LQVDRQEFVCLKFLILFSLDEKFLENHSLAKSAQEKVSSALLEYTMCHYP 417
>gi|58983127|gb|AAW83491.1| fushi tarazu factor 1 [Oncorhynchus mykiss]
Length = 382
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 51/179 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
CI + +++V DQMKLL + WS++LVLDH+ +++ + L GQ+ DL S+G
Sbjct: 202 CIF-FKELKVGDQMKLLHNCWSELLVLDHVFRQVQHGKESSLLLVTGQEMDLSSMGSQAG 260
Query: 118 PTL------------RDRFTQVTHK-LSELKF-----PNC-------------------- 139
TL R QV + ++ LKF PN
Sbjct: 261 VTLSGLVQRGQVLAGRLLTLQVDRREVACLKFLLLFNPNVKLLENQAFVESVQEQVNGAL 320
Query: 140 ------------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +++ LPEL ++++ E++L +KH +G P LL+EMLHAKR
Sbjct: 321 LEYTLCTYPLYLDKFSQVVMRLPELRALSTQAEDYLCYKHLSGEVPCNNLLIEMLHAKR 379
>gi|185133486|ref|NP_001118009.1| fushi tarazu factor 1 [Oncorhynchus mykiss]
gi|58983110|gb|AAW83490.1| fushi tarazu factor 1 [Oncorhynchus mykiss]
Length = 487
Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ + L GQ+ DL S+G TL
Sbjct: 310 FKELKVGDQMKLLHNCWSELLVLDHVFRQVQHGKESSLLLVTGQEMDLSSMGSQAGVTLS 369
Query: 121 -----------RDRFTQVTHK-LSELKF-----PNC------------------------ 139
R QV + ++ LKF PN
Sbjct: 370 GLVQRGQVLAGRLLTLQVDRREVACLKFLLLFNPNVKLLENQAFVESVQEQVNGALLEYT 429
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +++ LPEL ++++ E++L +KH +G P LL+EMLHAKR
Sbjct: 430 LCTYPLYLDKFSQVVMRLPELRALSTQAEDYLCYKHLSGEVPCNNLLIEMLHAKR 484
>gi|449268591|gb|EMC79447.1| Steroidogenic factor 1, partial [Columba livia]
Length = 457
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 53/178 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ D+ ++ +L
Sbjct: 279 FKELEVGDQMKLLQNCWSELLVFDHVYRQLQHGKEHSVLLVTGQEVDMSTIAAQAGSILN 338
Query: 117 VPTLRD------------------------------------------RFTQVTHKLSEL 134
LR + Q T + L
Sbjct: 339 SLVLRAQELVLHLLHPLQQVGQTHEFGTISPSSSSLADVKYLQNHALVKEAQETANAALL 398
Query: 135 KFPNC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
++ C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 399 EYTVCHYPHATDKFRQLLLRLAEVRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 456
>gi|76160806|gb|ABA39863.1| SF-1 [Oreochromis aureus]
Length = 486
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ +A D L GQ+ +L S+ TL
Sbjct: 309 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHAKEDSILLVTGQEVELSSILSQAEGTLS 368
Query: 121 -----------RDRFTQVTHK-----LSELKF-PNC------------------------ 139
R R QV + S L F PN
Sbjct: 369 SLVQRGQELAARLRVLQVDRREIACLTSLLLFNPNVKLLENQAFVEGVQEQVNAALLEYT 428
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHAKR
Sbjct: 429 LSAYPQFQEKFSQLLVRLPELRSLSTQAEDYLCYMHVSGEVPCNNLLIEMLHAKR 483
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+ LLL NP+V+ + N+ VE EQV ALL+Y ++AYPQ Q
Sbjct: 384 LQVDRREIACLTSLLLFNPNVKLLENQAFVEGVQEQVNAALLEYTLSAYPQFQ 436
>gi|4104218|gb|AAD01975.1| steroidogenic factor 1 [Trachemys scripta]
Length = 466
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ ++ ++ L
Sbjct: 291 FKELEVGDQMKLLQNCWSELLVFDHIYRQVQHGKEHSMLLVTGQEVEMATIAAQAGSNLN 350
Query: 121 -------------------RDRFTQV--------------THKLSE----------LKFP 137
R F + H L++ L++
Sbjct: 351 NLVLRAQELVLHLHSLQVDRQEFVCLKFLILFSLDVKYLENHSLAKDAQEKANAALLEYT 410
Query: 138 NC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 411 ICHYPHAADKFRQLLLRLAEIRSLSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 465
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALL+Y I YP
Sbjct: 366 LQVDRQEFVCLKFLILFSLDVKYLENHSLAKDAQEKANAALLEYTICHYP 415
>gi|342360003|gb|AEL29574.1| FTZ-F1 [Monopterus albus]
Length = 486
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLL + WS++LVLDH+ +++ + D L GQ+ +L S+ TL
Sbjct: 309 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHGKEDSILLVTGQEVELSSILSQAEVTLS 368
Query: 121 -----------RDRFTQVTHK-LSELKF-----PNC------------------------ 139
R R QV + ++ LKF PN
Sbjct: 369 SLVQRGQELAARLRALQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNGALLEYT 428
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E+ L + H +G P LL+EMLHAKR
Sbjct: 429 LSTYPQFQEKFSQLVVRLPELRSLSTQAEDFLCYMHLSGEVPCNNLLIEMLHAKR 483
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + N+ VE EQV ALL+Y ++ YPQ Q
Sbjct: 384 LQVDRREIACLKFLLLFNPNVKLLENQAFVEGVQEQVNGALLEYTLSTYPQFQ 436
>gi|345326142|ref|XP_001509426.2| PREDICTED: steroidogenic factor 1-like [Ornithorhynchus anatinus]
Length = 480
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 83/179 (46%), Gaps = 51/179 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL----- 112
CI + +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++
Sbjct: 302 CIF-FKELEVADQMKLLQNCWSELLVFDHIYRQIQHRKESTLLLVTGQEVDLATVAAQAG 360
Query: 113 GLLGVPTLR-------------DRFTQVTHKL-----SELKF------------------ 136
LL LR DR V K ++KF
Sbjct: 361 ALLNSLVLRAQELVLQLHSLQVDRQEFVCLKFLILFSLDVKFLENHSLAKDAQEKAHAAL 420
Query: 137 --------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DK +L+ L E+ ++ + EE+LYHKH G P LL+EMLHAKR
Sbjct: 421 LDYTLGHYPHCGDKVRQLLLRLAEVRALSMQAEEYLYHKHLGGEVPCNNLLLEMLHAKR 479
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALLDY + YP
Sbjct: 379 SLQVDRQEFVCLKFLILFSLDVKFLENHSLAKDAQEKAHAALLDYTLGHYP 429
>gi|45384188|ref|NP_990408.1| steroidogenic factor 1 [Gallus gallus]
gi|2541860|dbj|BAA22839.1| SF-1/Ad4BP [Gallus gallus]
Length = 466
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 52/176 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF-------------- 107
+ +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 291 FKELEVGDQMKLLQNCWSELLVFDHVYRQLQHGKEHSVLLVTGQEVDLSAVAAQAGSILH 350
Query: 108 ---------------------DLLSLGLLGVPTLRDRFTQVTHKLSE------------- 133
+ + L L + +L ++ + H L++
Sbjct: 351 SLVLRAQELVLHLHSPQVDRQEFVCLKFLILFSLDVKYLE-NHALAKDAQEKANAALLEY 409
Query: 134 --LKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 410 TVCHYPHCTDKFRQLLLRLTEVRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 465
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 15 KFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+ D +++C+KFL+L + DV+ + N ++ E+ ALL+Y + YP
Sbjct: 367 QVDRQEFVCLKFLILFSLDVKYLENHALAKDAQEKANAALLEYTVCHYP 415
>gi|371591341|gb|AEX55032.1| fushi tarazu factor 1 [Clarias gariepinus]
Length = 469
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQM+LL + WS++L+LDH+ +++H+ + L GQ+ +L +S L +
Sbjct: 291 FKELKVGDQMQLLHNCWSELLLLDHVFRQVHHGRDNTLLLITGQEVELAGVVSDSGLTLS 350
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R ++T +L L+ PN
Sbjct: 351 SLVQRGQELTRRLQLLQVDRREMACPKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYT 410
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
D+F +L+ LPE+ ++++ EE+L KH +G P LL+EMLHAKR
Sbjct: 411 LTSYPQHVDRFSQLVLRLPEVRALSAQAEEYLSSKHLSGDVPCNNLLIEMLHAKR 465
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D + C KFL+L NP+V+ + N+ VE EQV +LL+Y +T+YPQ
Sbjct: 366 LQVDRREMACPKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYTLTSYPQ 416
>gi|17223547|gb|AAG49005.1| fushi-tarazu factor 1-B [Clarias gariepinus]
Length = 479
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQM+LL + WS++L+LDH+ +++H+ + L GQ+ +L +S L +
Sbjct: 301 FKELKVGDQMQLLHNCWSELLLLDHVFRQVHHGRDNTLLLITGQEVELAGVVSDSGLTLS 360
Query: 119 TLRDRFTQVTHKL----------SELKF-----PNC------------------------ 139
+L R ++ +L + LKF PN
Sbjct: 361 SLVQRGQELARRLQLLQVDRREMACLKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYT 420
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
D+F +L+ LPE+ ++++ EE+L KH +G P LL+EMLHAKR
Sbjct: 421 LTSYPQHVDRFSQLVLRLPEVRALSAQAEEYLSSKHLSGDVPCNNLLIEMLHAKR 475
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D + C+KFL+L NP+V+ + N+ VE EQV +LL+Y +T+YPQ
Sbjct: 376 LQVDRREMACLKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYTLTSYPQ 426
>gi|327290547|ref|XP_003229984.1| PREDICTED: steroidogenic factor 1-like, partial [Anolis
carolinensis]
Length = 456
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL------------ 109
+ +++V DQMKLLQ+ WS++LV DH+ +++ L GQ+ DL
Sbjct: 281 FKELEVGDQMKLLQNCWSELLVFDHIFRQVQYGKEHSMMLVTGQEVDLSTVATQAGSILN 340
Query: 110 -----------------------LSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+ L L + +L ++ + + + E +
Sbjct: 341 NLVLRAQELVLHLHSLQVDKQEFVCLKFLILFSLDVKYVENSSLVKEAQEKANAALMEYT 400
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+ DKF +L+ L ++ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 401 LCHYPHATDKFRQLLLRLADIRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 455
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N + V+E E+ AL++Y + YP D+ +
Sbjct: 356 LQVDKQEFVCLKFLILFSLDVKYVENSSLVKEAQEKANAALMEYTLCHYP--HATDKFRQ 413
Query: 74 LQHSWSDMLVLD 85
L +D+ L
Sbjct: 414 LLLRLADIRALS 425
>gi|17223545|gb|AAG49004.1| fushi tarazu factor 1-A [Clarias gariepinus]
Length = 469
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQM+LL + WS++L+LDH+ +++H+ + L GQ+ +L +S L +
Sbjct: 291 FKELKVGDQMQLLHNCWSELLLLDHVFRQVHHGRDNTLLLITGQEVELAGVVSDSGLTLS 350
Query: 119 TLRDRFTQVTHKL----------SELKF-----PNC------------------------ 139
+L R ++ +L + LKF PN
Sbjct: 351 SLVQRGQELARRLQLLQVDRREMACLKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYT 410
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
D+F +L+ LPE+ ++++ EE+L KH +G P LL+EMLHAKR
Sbjct: 411 LTSYPQHVDRFSQLVLRLPEVRALSAQAEEYLSSKHLSGDVPCNNLLIEMLHAKR 465
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D + C+KFL+L NP+V+ + N+ VE EQV +LL+Y +T+YPQ
Sbjct: 366 LQVDRREMACLKFLVLFNPNVKLLENQALVESVQEQVNSSLLEYTLTSYPQ 416
>gi|47214970|emb|CAG01304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 510
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 51/180 (28%)
Query: 58 CITAYPQIQ-VDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLG 113
C A+P Q V DQMKLL + WS++LVLDH+ +++ + D L GQ+ L LS
Sbjct: 329 CSQAHPLEQAVGDQMKLLHNCWSELLVLDHIFRQVQHGQEDSILLVTGQEVALSFILSQA 388
Query: 114 LLGVPTLRDRFTQVTHKL----------SELKF-----PNC------------------- 139
+ L R ++ KL + LKF PN
Sbjct: 389 EATLSALVQRGQELAAKLRLLQVDRREIACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGA 448
Query: 140 -------------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E+ L + H +G P LL+EMLHAKR
Sbjct: 449 LLEYTLSTYPQFQEKFSQLVVRLPELRTLSTQAEDFLCYMHLSGEVPCNNLLIEMLHAKR 508
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + ++ VE EQV ALL+Y ++ YPQ Q
Sbjct: 409 LQVDRREIACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYTLSTYPQFQ 461
>gi|168479587|dbj|BAG11546.1| Ad4BP [Eublepharis macularius]
Length = 468
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL- 120
+ +++V DQMKLLQ+ WS++LV DH+ +++ L GQ+ D+ ++ L
Sbjct: 293 FKELEVGDQMKLLQNCWSELLVFDHIFRQVQYGKEHSMLLVTGQEVDMSTVATQAGSILN 352
Query: 121 -------------------RDRF------------------------TQVTHKLSELKFP 137
R F Q + L++
Sbjct: 353 NLVLRAQELVLHLHSLQVDRQEFVCLKFLILFSLDVKYLENSSLAKDAQEKANAALLEYT 412
Query: 138 NC------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
C DKF +L+ L ++ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 413 VCHYPHATDKFRQLLIRLADIRSLSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 467
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALL+Y + YP
Sbjct: 368 LQVDRQEFVCLKFLILFSLDVKYLENSSLAKDAQEKANAALLEYTVCHYP 417
>gi|116267937|ref|NP_001070740.1| nuclear receptor subfamily 5, group A, member 5 isoform 2 [Danio
rerio]
gi|115528620|gb|AAI24757.1| Nuclear receptor subfamily 5, group A, member 5 [Danio rerio]
Length = 511
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++VDDQM LLQ WS++LVLDH+ +++ L GQ+ + +LS + +
Sbjct: 336 FKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSICLITGQQIEASTILSQAGVTLS 395
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R + KL L+ P+
Sbjct: 396 SLVSRAQDLVTKLRSLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHT 455
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
DKFG+L+ LPE+ I+ + EE+LY +H G P +LL EMLHAK
Sbjct: 456 MQTHPGHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHAK 509
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+K+L+L NPDV+ + NR VE+ E+V KAL+D+ + +P
Sbjct: 410 SLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHTMQTHP 460
>gi|66356139|gb|AAY45704.1| nuclear receptor subfamily 5 group A member 1 [Ictalurus punctatus]
Length = 479
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQM+LL + WS++L+LDH+ +++H+ L GQ+ +L +S L +
Sbjct: 301 FKELKVGDQMQLLHNCWSELLLLDHVFRQVHHGRDHTLLLITGQEVELAGIVSDSGLTLS 360
Query: 119 TLRDRFTQVTHKL----------SELKF-----PNC------------------------ 139
+L R ++ +L + LKF PN
Sbjct: 361 SLVQRGQELARRLQLLQVDRREMACLKFLILFNPNVKLLENQALVESVQEQVNSALLEYT 420
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
D+F +L+ LPE+ ++++ EE+L KH +G P LL+EMLHAKR
Sbjct: 421 LTSYPQHVDRFSQLVLRLPEVRALSAQAEEYLSSKHLSGDVPCNNLLIEMLHAKR 475
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D + C+KFL+L NP+V+ + N+ VE EQV ALL+Y +T+YPQ
Sbjct: 376 LQVDRREMACLKFLILFNPNVKLLENQALVESVQEQVNSALLEYTLTSYPQ 426
>gi|190340082|gb|AAI63909.1| Nr5a5 protein [Danio rerio]
Length = 537
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++VDDQM LLQ WS++LVLDH+ +++ L GQ+ + +LS + +
Sbjct: 362 FKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSICLITGQQIEASTILSQAGMTLS 421
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R + KL L+ P+
Sbjct: 422 SLVSRAQDLVTKLRSLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHT 481
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
DKFG+L+ LPE+ I+ + EE+LY +H G P +LL EMLHAK
Sbjct: 482 MQTHPGHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHAK 535
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+K+L+L NPDV+ + NR VE+ E+V KAL+D+ + +P
Sbjct: 437 LQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHTMQTHP 486
>gi|47550853|ref|NP_999944.1| nuclear receptor subfamily 5, group A, member 5 isoform 1 [Danio
rerio]
gi|13345357|gb|AAK19303.1|AF327373_1 Ff1c [Danio rerio]
Length = 537
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++VDDQM LLQ WS++LVLDH+ +++ L GQ+ + +LS + +
Sbjct: 362 FKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSICLITGQQIEASTILSQAGVTLS 421
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R + KL L+ P+
Sbjct: 422 SLVSRAQDLVTKLRSLQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHT 481
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
DKFG+L+ LPE+ I+ + EE+LY +H G P +LL EMLHAK
Sbjct: 482 MQTHPGHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDFPCNSLLTEMLHAK 535
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+K+L+L NPDV+ + NR VE+ E+V KAL+D+ + +P
Sbjct: 437 LQLDREEFVCLKYLVLFNPDVKSVQNRRQVEQTQERVNKALMDHTMQTHP 486
>gi|66361118|pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LL 115
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 64 VFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 123
Query: 116 GVPTLR-------------DRFTQVTHKLS-----ELKF--------------------- 136
LR DR V K ++KF
Sbjct: 124 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 183
Query: 137 -----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 184 TLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 239
>gi|24119283|ref|NP_571869.1| nuclear receptor subfamily 5, group A, member 1a [Danio rerio]
gi|7243339|gb|AAF43283.1|AF198086_1 ff1b [Danio rerio]
Length = 454
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 49/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP--- 118
+ +++V DQM+LL + WS++L+LDH+ +++H+ L GQ+ +L ++ G P
Sbjct: 277 FKELKVGDQMRLLHNCWSELLLLDHICRQVHHGRDGSLLLITGQEVELSAVLDAGPPLSS 336
Query: 119 --------TLRDRFTQV-THKLSELKF--------------------------------- 136
+ R + QV + +++ LKF
Sbjct: 337 MVERGQDLSRRLQLLQVDSREMACLKFLILFNPNVKLLENPQFVESVQEQVNGALLEYTL 396
Query: 137 ---PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
P C ++F +L+ LPEL +++ E+ L +KH G P LL+EMLHAK
Sbjct: 397 FSYPQCVERFSQLILRLPELRSLSAEAEDFLCYKHLCGEVPCNNLLIEMLHAK 449
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ D + C+KFL+L NP+V+ + N VE EQV ALL+Y + +YPQ
Sbjct: 351 LQVDSREMACLKFLILFNPNVKLLENPQFVESVQEQVNGALLEYTLFSYPQC 402
>gi|217035474|pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LL 115
+ +++V DQM LLQ+SWS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 68 VFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 127
Query: 116 GVPTLR-------------DRFTQVTHKL-----SELKFPN------------------- 138
LR DR V K ++KF N
Sbjct: 128 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 187
Query: 139 --------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 188 TLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 243
>gi|62738669|pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LL 115
+ +++V DQM LLQ+SWS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 70 VFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 129
Query: 116 GVPTLR-------------DRFTQVTHKL-----SELKFPN------------------- 138
LR DR V K ++KF N
Sbjct: 130 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 189
Query: 139 --------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 190 TLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 245
>gi|45686255|gb|AAS75792.1| FTZ-F1 [Acanthopagrus schlegelii]
Length = 464
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 50/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQMKLL + WS++LVLDH+ +++ + D L GQ+ +L LS +
Sbjct: 292 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHGQEDSILLVTGQEVELSFILSQSEATLS 351
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R ++ +L L+ PN
Sbjct: 352 SLVQRGQELAVRLRALQVDRREVACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYT 411
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHA
Sbjct: 412 LSTYPQFQEKFSQLVMRLPELRSLSTQAEDYLCYMHLSGEVPCNNLLIEMLHA 464
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + ++ VE EQV ALL+Y ++ YPQ Q
Sbjct: 367 LQVDRREVACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYTLSTYPQFQ 419
>gi|348509457|ref|XP_003442265.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oreochromis niloticus]
Length = 543
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++V+DQM LLQ WS++LVLDH+ +++ L GQ+ + ++S + +
Sbjct: 368 FKELKVEDQMVLLQSCWSELLVLDHLCRQVTYGKEGCIYLVTGQQIEVSTIISQAGVTLS 427
Query: 119 TLRDRFTQVTHKLSELKF---------------PN------------------------- 138
+L R + KL L P+
Sbjct: 428 SLVSRTQDLVSKLKALHLDRHEFVCLKYLVLFNPDVKSVHNRRQVEQTQERVNRALMEYT 487
Query: 139 -------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
CDKFG+L+ LPE+ I+ + E++LY +H G P +LL EMLH K
Sbjct: 488 QRNHPGHCDKFGQLLLRLPEVRSISLQIEDYLYQRHLQGDLPCNSLLTEMLHTK 541
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D +++C+K+L+L NPDV+ + NR VE+ E+V +AL++Y +P
Sbjct: 443 LHLDRHEFVCLKYLVLFNPDVKSVHNRRQVEQTQERVNRALMEYTQRNHP 492
>gi|120974730|gb|ABM46723.1| NR5A2 [Gorilla gorilla]
gi|124111233|gb|ABM92008.1| NR5A2 [Pan troglodytes]
Length = 131
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 84 EKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 130
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 31 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 81
>gi|355707933|gb|AES03111.1| nuclear receptor subfamily 5, group A, member 2 [Mustela putorius
furo]
Length = 120
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 73 EKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 119
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 20 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 70
>gi|47212572|emb|CAF92903.1| unnamed protein product [Tetraodon nigroviridis]
Length = 241
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 194 DKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPCNNLLIEMLHAKR 240
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 66 QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFT 125
QVDDQMKLLQ+ WS++L+LDH+ +++ +A L GQ+ D + TL + +
Sbjct: 1 QVDDQMKLLQNCWSELLILDHIFRQVVHAKEGSILLVTGQQVDFAVIASQAGATLNNLLS 60
Query: 126 QVTHKLSELK 135
+S+L+
Sbjct: 61 HAQELVSKLR 70
>gi|354499096|ref|XP_003511647.1| PREDICTED: steroidogenic factor 1 [Cricetulus griseus]
gi|344236727|gb|EGV92830.1| Steroidogenic factor 1 [Cricetulus griseus]
Length = 462
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>gi|20522231|ref|NP_620639.1| steroidogenic factor 1 [Mus musculus]
gi|341942103|sp|P33242.3|STF1_MOUSE RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Adrenal 4-binding protein; AltName:
Full=Embryonal LTR-binding protein; Short=ELP; AltName:
Full=Embryonal long terminal repeat-binding protein;
AltName: Full=Fushi tarazu factor homolog 1; AltName:
Full=Nuclear receptor subfamily 5 group A member 1;
AltName: Full=Steroid hormone receptor Ad4BP; AltName:
Full=Steroid hydroxylase positive regulator
gi|21217551|gb|AAM43952.1|AF511594_1 steroidogenic factor-1 [Mus musculus]
gi|425577|gb|AAB28338.1| steroidogenic factor 1 [Mus musculus]
gi|74141134|dbj|BAE22121.1| unnamed protein product [Mus musculus]
gi|74188443|dbj|BAE25855.1| unnamed protein product [Mus musculus]
gi|83405940|gb|AAI10477.1| Nuclear receptor subfamily 5, group A, member 1 [Mus musculus]
gi|83405942|gb|AAI10478.1| Nuclear receptor subfamily 5, group A, member 1 [Mus musculus]
Length = 462
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>gi|74142710|dbj|BAE33893.1| unnamed protein product [Mus musculus]
gi|148694877|gb|EDL26824.1| nuclear receptor subfamily 5, group A, member 1, isoform CRA_b [Mus
musculus]
Length = 462
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>gi|300797824|ref|NP_001178028.1| steroidogenic factor 1 [Rattus norvegicus]
gi|1703164|sp|P50569.1|STF1_RAT RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Adrenal 4-binding protein; AltName:
Full=Fushi tarazu factor homolog 1; AltName:
Full=Nuclear receptor subfamily 5 group A member 1;
AltName: Full=Steroid hormone receptor Ad4BP
gi|1449196|dbj|BAA07722.1| Ad4BP [Rattus norvegicus]
gi|149047894|gb|EDM00510.1| rCG37716, isoform CRA_a [Rattus norvegicus]
Length = 462
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>gi|431921891|gb|ELK19094.1| Nuclear receptor subfamily 5 group A member 2 [Pteropus alecto]
Length = 95
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 48 EKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 94
>gi|432869184|ref|XP_004071664.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 [Oryzias
latipes]
Length = 536
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++V+DQM LLQ WS++LVLDH+ +++ L GQ+ + ++S + +
Sbjct: 361 FKELKVEDQMVLLQSCWSELLVLDHLCRQVTYGKESCVYLVTGQQIEVSTIVSQAGVTLS 420
Query: 119 TLRDRFTQVTHKLSELKF---------------PN------------------------- 138
+L R + KL L+ P+
Sbjct: 421 SLVSRAQDLVAKLKALQLDKQEFVCLKYLVLFNPDVKSVQNRKQVELTQEKVNRALMEHT 480
Query: 139 -------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
DKFG+L+ LPE+ I+ + E++LY +H G P +LL EMLHAK
Sbjct: 481 QRNNPGHSDKFGQLLLRLPEVRSISLQVEDYLYQRHLLGDLPCNSLLAEMLHAK 534
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ D +++C+K+L+L NPDV+ + NR VE E+V +AL+++
Sbjct: 436 LQLDKQEFVCLKYLVLFNPDVKSVQNRKQVELTQEKVNRALMEH 479
>gi|126352395|ref|NP_001075320.1| steroidogenic factor 1 [Equus caballus]
gi|49036495|sp|Q9GKL2.1|STF1_HORSE RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Nuclear receptor subfamily 5 group A
member 1
gi|11493781|gb|AAG35648.1|AF203911_1 steroidogenic factor 1 [Equus caballus]
Length = 461
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + T L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSTLLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQMHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANTALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANTALLDYTLCHYP 410
>gi|392284148|gb|AFM54605.1| FTZ-F1 [Sebastes schlegelii]
Length = 482
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL---LSLGLLGVP 118
+ +++V DQMKLL + W ++LVLDH+ +++ + + L GQ+ +L LS +
Sbjct: 305 FKELRVGDQMKLLHNCWFELLVLDHIFRQVQHGQEESILLVTGQEVELSFILSQAEATLS 364
Query: 119 TLRDRFTQVTHKLSELKF---------------PNC------------------------ 139
+L R ++ +L L+ PN
Sbjct: 365 SLIQRGQELAARLRALQLDRREIACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYP 424
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KF +L+ LPEL ++++ E++L + H +G P LL+EML AKR
Sbjct: 425 LSPYPQFQEKFSQLVVRLPELRSLSTQAEDYLCYMHLSGEVPCNNLLIEMLPAKR 479
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KFLLL NP+V+ + ++ VE EQV ALL+Y ++ YPQ Q
Sbjct: 380 LQLDRREIACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYPLSPYPQFQ 432
>gi|301769265|ref|XP_002920047.1| PREDICTED: steroidogenic factor 1-like [Ailuropoda melanoleuca]
gi|281350177|gb|EFB25761.1| hypothetical protein PANDA_008727 [Ailuropoda melanoleuca]
Length = 455
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL------------ 109
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L
Sbjct: 280 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELSTVAAQAGSLLH 339
Query: 110 ---------------------------------LSLGLLGVPTL-RDRFTQVTHKLSELK 135
L + L P+L +D + L +
Sbjct: 340 GLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNPSLVKDAQEKANAALLDYT 399
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 400 LCHYPHCGDKFQQLLLCLVEVRALSVQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 454
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 355 LQLDRQEFVCLKFLILFSLDVKFLNNPSLVKDAQEKANAALLDYTLCHYP 404
>gi|47220030|emb|CAG12178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL--------- 112
+ +++V+DQM LLQ WS++LVLDH+ +++ + L +GQ+ ++ ++
Sbjct: 340 FKELKVEDQMVLLQSCWSELLVLDHLCRQVAYSKEGCIYLVSGQQIEVSTILTQAGATLS 399
Query: 113 GLLG----------------------------------------VPTLRDRFTQVTHKLS 132
GL+ V ++R + + +
Sbjct: 400 GLVSRTQDLVSKLKALQLDRQEFVCLKYLVLFNPDVKSVQGRRQVEQTQERVNRALMEHT 459
Query: 133 ELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ + P DKFG+L+ LPE+ I+ + EE+LY +H G P +LL EMLH K
Sbjct: 460 QQRHPRHSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHTK 513
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D +++C+K+L+L NPDV+ + R VE+ E+V +AL+++ +P+
Sbjct: 415 LQLDRQEFVCLKYLVLFNPDVKSVQGRRQVEQTQERVNRALMEHTQQRHPR 465
>gi|426226181|ref|XP_004007227.1| PREDICTED: LOW QUALITY PROTEIN: steroidogenic factor 1 [Ovis aries]
Length = 443
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQK--------------- 106
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 268 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKESSILLVTGQEVELTTVAAQAGSLLH 327
Query: 107 --------------------FDLLSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+D L L + +L +F + E +
Sbjct: 328 SLVLRAEEXXXPLLALXLEGWDFFCLTFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 387
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 388 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 442
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 12 LELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L L + D+ C+ FL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 341 LALXLEGWDFFCLTFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 392
>gi|410979136|ref|XP_003995942.1| PREDICTED: LOW QUALITY PROTEIN: steroidogenic factor 1 [Felis
catus]
Length = 459
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 284 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTAVAAQAGSLLH 343
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 344 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 403
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 404 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 458
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 359 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 408
>gi|410902791|ref|XP_003964877.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Takifugu rubripes]
Length = 539
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD---LLSLGLLGVP 118
+ +++V+DQM LLQ WS++LVLDH+ +++ + L +GQ+ + +LS +
Sbjct: 364 FKELKVEDQMVLLQSCWSELLVLDHLCRQVIYSKEGCIYLVSGQQIEVSTILSQAGATLS 423
Query: 119 TLRDRFTQVTHKLSELKF---------------PN------------------------- 138
L R + KL L+ P+
Sbjct: 424 GLVSRTQDLVSKLKALQLDRQEFVCLKYLVLFNPDVKSVQSRRQVEQTQERVNRALMEHT 483
Query: 139 -------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
DKFG+L+ LPE+ I+ + EE+LY +H G P +LL EMLH K
Sbjct: 484 QQRHPRQSDKFGQLLLRLPEVRSISLQVEEYLYQRHLLGDLPCNSLLTEMLHTK 537
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 36/51 (70%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D +++C+K+L+L NPDV+ + +R VE+ E+V +AL+++ +P+
Sbjct: 439 LQLDRQEFVCLKYLVLFNPDVKSVQSRRQVEQTQERVNRALMEHTQQRHPR 489
>gi|344271937|ref|XP_003407793.1| PREDICTED: steroidogenic factor 1-like [Loxodonta africana]
Length = 461
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|160221327|sp|P79387.3|STF1_PIG RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Adrenal 4-binding protein; AltName:
Full=Fushi tarazu factor homolog 1; AltName:
Full=Nuclear receptor subfamily 5 group A member 1;
AltName: Full=Steroid hormone receptor Ad4BP
gi|123299967|dbj|BAF45331.1| nuclear receptor subfamily 5, group A, member 1 [Sus scrofa]
Length = 461
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|351702108|gb|EHB05027.1| Steroidogenic factor 1 [Heterocephalus glaber]
Length = 461
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQVQYGKEGSILLVTGQEVELSTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 SLVLRAQELVLQLHVLQLDRQEFVCLKFLILLSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSVQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 17 DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
D +++C+KFL+LL+ DV+ + N + V++ E+ ALLDY + YP
Sbjct: 364 DRQEFVCLKFLILLSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|431898816|gb|ELK07186.1| Steroidogenic factor 1 [Pteropus alecto]
Length = 461
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|67463977|pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
gi|67463978|pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 39 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 93
Query: 90 RMHNALPDETTLHNGQKFDLLSL-----GLLGVPTLRDRFTQVTHKLS------------ 132
++ + L GQ+ +L ++ LL LR + +
Sbjct: 94 QVQHGKEGSILLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKF 153
Query: 133 ------ELKFPN---------------------C------DKFGKLMSILPELHEIASRG 159
+LKF N C DKF +L+ L E+ ++ +
Sbjct: 154 IILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYPHSGDKFQQLLLCLVEVRALSMQA 213
Query: 160 EEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+E+LYHKH P LL+EML AK+
Sbjct: 214 KEYLYHKHLGNEMPRNNLLIEMLQAKQ 240
>gi|395824169|ref|XP_003785343.1| PREDICTED: steroidogenic factor 1 [Otolemur garnettii]
Length = 461
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 NLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|1805353|dbj|BAA19127.1| ELP3 [Mus musculus]
Length = 463
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 51/176 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L +GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVSGQEVELSTVAVEAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRG-EEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + E++LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEQYLYHKHLGNEMPRNNLLIEMLQAKQ 462
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>gi|345805854|ref|XP_852030.2| PREDICTED: steroidogenic factor 1 [Canis lupus familiaris]
Length = 497
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ ++ ++ LL
Sbjct: 322 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKDGSILLVTGQEVEMSTVAAQAGSLLH 381
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 382 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 441
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 442 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 496
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 397 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 446
>gi|413914793|gb|AFW21375.1| steroidogenic factor 1 [Bubalus bubalis]
Length = 461
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF-------------- 107
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELAAVAAQAGSLLH 345
Query: 108 ---------------------DLLSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+ + L L + +L +F + E +
Sbjct: 346 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 405
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 410
>gi|440908258|gb|ELR58301.1| Steroidogenic factor 1 [Bos grunniens mutus]
Length = 461
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF-------------- 107
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 108 ---------------------DLLSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+ + L L + +L +F + E +
Sbjct: 346 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 405
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 410
>gi|27806027|ref|NP_776828.1| steroidogenic factor 1 [Bos taurus]
gi|416584|sp|Q04752.1|STF1_BOVIN RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Adrenal 4-binding protein; AltName:
Full=Fushi tarazu factor homolog 1; AltName:
Full=Nuclear receptor subfamily 5 group A member 1;
AltName: Full=Steroid hormone receptor Ad4BP
gi|217432|dbj|BAA02764.1| Ad4BP [Bos taurus]
gi|296482164|tpg|DAA24279.1| TPA: steroidogenic factor 1 [Bos taurus]
Length = 461
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF-------------- 107
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 108 ---------------------DLLSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+ + L L + +L +F + E +
Sbjct: 346 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 405
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 410
>gi|47523442|ref|NP_999344.1| steroidogenic factor 1 [Sus scrofa]
gi|3757499|gb|AAC64209.1| steroidogenic factor-1 SF-1 [Sus scrofa]
Length = 461
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++ V DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELHVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|5881252|gb|AAD55096.1|AF180296_1 steroidogenic factor one, partial [Alligator mississippiensis]
Length = 131
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +L+ L E+ ++ + EE+LYHKH +G P LL+EMLHAKR
Sbjct: 84 DKFRQLLLRLAEIRALSMQAEEYLYHKHLSGEVPCNNLLIEMLHAKR 130
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALL+Y + YP
Sbjct: 31 LQVDRQEFVCLKFLILFSLDVKYLENHSLAKDAQEKANAALLEYTVCHYP 80
>gi|146447251|gb|ABQ41307.1| FTZ-F1 [Cynoglossus semilaevis]
Length = 485
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ D + C+KF++L NP+V+ N+ VE EQV ALL+Y +T YPQ Q
Sbjct: 383 LQVDRREIACLKFIVLFNPNVKMPENQAFVEGVQEQVNGALLEYTLTTYPQFQ 435
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL------------ 109
+ +++V DQMKLL + WS++LVLDH+ +++ +A D L GQ+ L
Sbjct: 308 FKELKVGDQMKLLHNCWSELLVLDHIFRQVLHAKEDSILLVTGQEIKLPLILDEVDATLS 367
Query: 110 -------------------------LSLGLLGVPTLR----DRFT-----QVTHKLSELK 135
L +L P ++ F QV L E
Sbjct: 368 SLVQKGQNLAMRLHTLQVDRREIACLKFIVLFNPNVKMPENQAFVEGVQEQVNGALLEYT 427
Query: 136 FPNCDKFG-KLMSILPELHEIAS---RGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+F K +L L E+ S + E++L + + +G P LL+EMLHAKR
Sbjct: 428 LTTYPQFQEKFSQLLVPLTEVRSLSMQAEDYLCYMNLSGEVPCNNLLIEMLHAKR 482
>gi|149047896|gb|EDM00512.1| rCG37716, isoform CRA_c [Rattus norvegicus]
Length = 539
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ + L
Sbjct: 364 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 423
Query: 122 D---RFTQVTHKLSELKFPN----CDKFGKLMSI-------------------------- 148
R ++ +L L+ C KF L S+
Sbjct: 424 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 483
Query: 149 -----------------LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 484 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 538
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 439 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 488
>gi|118343798|ref|NP_001071721.1| nuclear receptor [Ciona intestinalis]
gi|70569703|dbj|BAE06460.1| nuclear receptor [Ciona intestinalis]
Length = 504
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 48/171 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF--DLLSLGLLGVPT 119
+ +QV DQMKLLQ SW ++L+LDH+ QR D L G KF DL + V T
Sbjct: 331 FADLQVSDQMKLLQDSWIELLILDHI-QRQLKLKSDSIELVTGHKFSRDLSKVSSHCVIT 389
Query: 120 LR--DRFTQVTHKLSELKF-----------------------PNC--------------- 139
R R + K + L+ PN
Sbjct: 390 FRILKRLMDLEKKFAVLQVDEQEIACLKYLVLFDTESHTAGCPNVQEKVNEALCEYSKKN 449
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
D+ KL+ L E+ ++S+ E++L++KH G +LL+E+L A+
Sbjct: 450 YMDQPDRVNKLIFRLSEIRAVSSQIEDYLHYKHHEGKLTEGSLLVELLKAR 500
>gi|410928146|ref|XP_003977462.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Takifugu rubripes]
Length = 165
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ D + C+KFLLL NP+V+ + ++ VE EQV ALL+Y ++ YPQ
Sbjct: 63 LQVDRREIACLKFLLLFNPNVKLLEDQAFVEGVQEQVNGALLEYTLSTYPQF 114
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+KF +L+ LPEL ++++ E++L + H +G P LL+EMLHAKR
Sbjct: 116 EKFSQLVVRLPELRSLSTQAEDYLCYMHLSGEVPCNNLLIEMLHAKRA 163
>gi|194592438|gb|ACF76564.1| LRH-1' [Tachysurus fulvidraco]
Length = 350
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+ D +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 284 LQLDQREFVCLKFLVLFSLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQ-QTDKFGQL 342
Query: 74 L 74
L
Sbjct: 343 L 343
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+ +++ + L GQ+ D + TL
Sbjct: 209 FRELKVDDQMKLLQNCWSELLILDHIFRQVIHTKEGSILLVTGQQMDYALIASQAGATLN 268
Query: 122 DRFTQVTHKLSELK 135
+ ++ +S+L+
Sbjct: 269 NLLSRAQELVSKLR 282
>gi|34484276|gb|AAQ72771.1| FTZ-F1 [Epinephelus coioides]
Length = 468
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 50/174 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGL---LGVP 118
+ Q++++DQ+KLL WS++L+LD + +++ GQ+ DL + L +
Sbjct: 291 FKQLKLNDQVKLLHSCWSELLLLDIISRQVLCGKEGSLLPFTGQEMDLSDMASHAGLTLA 350
Query: 119 TLRDRFTQVTHKLSELKFPN----CDKF-------------------------------- 142
+L R ++ KL LK C KF
Sbjct: 351 SLVQRGQELVEKLHILKVDRQEFACIKFLILFNPDVTPLEDHQLIESVQEQVEGALLEYT 410
Query: 143 -----------GKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
L+ L EL ++S E++LY KH +G AP LL EMLHAK
Sbjct: 411 LCTSSHPPGHFAHLLLCLSELRCLSSFAEDYLYCKHLSGEAPCNNLLTEMLHAK 464
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY--CITAYP 63
LK D ++ C+KFL+L NPDV + + +E EQV+ ALL+Y C +++P
Sbjct: 366 LKVDRQEFACIKFLILFNPDVTPLEDHQLIESVQEQVEGALLEYTLCTSSHP 417
>gi|312069796|ref|XP_003137849.1| hypothetical protein LOAG_02263 [Loa loa]
gi|307766989|gb|EFO26223.1| hypothetical protein LOAG_02263 [Loa loa]
Length = 558
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q+ VDDQ+ L+ SW+ + VLD +H+ LP N + ++ L+G TL
Sbjct: 372 FEQLPVDDQIALIYTSWAPIHVLDFTFHILHSHLPISIQFGNS-PLPVSTICLMGFDTLA 430
Query: 122 DRFTQVTHKLSELKFPNCD 140
+F ++ KL L F CD
Sbjct: 431 PKFNELCSKLQSLNFDRCD 449
>gi|402591134|gb|EJW85064.1| hypothetical protein WUBG_04024 [Wuchereria bancrofti]
Length = 460
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q+ VDDQ+ L+ SW+ + VLD +H+ LP N + ++ L+G TL
Sbjct: 274 FAQLPVDDQIALIYTSWAPIHVLDFTFHILHSHLPISIQFGNS-PLPVSTICLMGFDTLA 332
Query: 122 DRFTQVTHKLSELKFPNCD 140
+F ++ KL L F CD
Sbjct: 333 PKFNELCSKLQSLNFDRCD 351
>gi|170586796|ref|XP_001898165.1| Nuclear hormone receptor family member nhr-25 [Brugia malayi]
gi|158594560|gb|EDP33144.1| Nuclear hormone receptor family member nhr-25, putative [Brugia
malayi]
Length = 558
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q+ VDDQ+ L+ SW+ + VLD +H+ LP N + ++ L+G TL
Sbjct: 372 FEQLPVDDQIALIYTSWAPIHVLDFTFHILHSHLPISIQFGNS-PLPVSTICLMGFDTLA 430
Query: 122 DRFTQVTHKLSELKFPNCD 140
+F ++ KL L F CD
Sbjct: 431 PKFNELCSKLQSLNFDRCD 449
>gi|332832881|ref|XP_520248.3| PREDICTED: steroidogenic factor 1 [Pan troglodytes]
Length = 652
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 600 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 651
Score = 43.5 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 477 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVA 528
>gi|216409744|dbj|BAH02309.1| steroidogenic factor-1 [Homo sapiens]
Length = 461
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH G P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNGMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|14582235|gb|AAK69416.1|AF275369_1 steroidogenic factor 1 [Calotes versicolor]
Length = 145
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 72 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 121
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 66 QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
++DDQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 1 KLDDQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVA 48
>gi|354501691|ref|XP_003512922.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like,
partial [Cricetulus griseus]
Length = 459
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL 112
+ +++VDDQMKLLQ+SWS++L+LDH+++++ L GQ D S+
Sbjct: 366 FRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSLLLITGQHVDYASI 416
>gi|10945629|gb|AAG24622.1| steroidogenic factor 1 [Ovis aries]
Length = 443
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 50/167 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 277 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKESSILLVTGQEVELTTVAAQAGSLLH 336
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 337 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 396
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL
Sbjct: 397 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLL 443
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 352 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 401
>gi|395505691|ref|XP_003757173.1| PREDICTED: steroidogenic factor 1 [Sarcophilus harrisii]
Length = 390
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
C+ + +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++
Sbjct: 285 CVV-FKELEVADQMKLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVDLSTVA 339
>gi|344243870|gb|EGV99973.1| Nuclear receptor subfamily 5 group A member 2 [Cricetulus griseus]
Length = 301
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL 112
+ +++VDDQMKLLQ+SWS++L+LDH+++++ L GQ D S+
Sbjct: 206 FRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSLLLITGQHVDYASI 256
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 17 DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
D +++ C+K L+L NPDVRG++N +VE E +Q AL + + YP
Sbjct: 254 DTTEFSCLKALILFNPDVRGLVNPNYVEYIQENIQCALKQHVKSQYP 300
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D S+ C++ ++L NPD +G+++ VE E+V L +YC YP+
Sbjct: 189 EMKMDKSELGCLRAIVLFNPDAKGLVSTQEVESLREKVYATLEEYCKCQYPE 240
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 52/193 (26%)
Query: 41 THVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDE 98
T++ + E+ L+++ I + ++ +DDQ+ LL+ W+++L+ H+ + + D
Sbjct: 96 TNIFQAAEEQLFTLVEWAKRIPHFTKLSLDDQVTLLRAGWNELLIAGFSHRSI--PVKDG 153
Query: 99 TTLHNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELKFPNCD----------------- 140
L G S GV T+ DR +++ K+ E+K +
Sbjct: 154 ILLATGIHVHRSSAHHAGVDTIFDRVLSELVAKMREMKMDKSELGCLRAIVLFNPDAKGL 213
Query: 141 ------------------------------KFGKLMSILPELHEIASRGEEHLYHKHCNG 170
+F KL+ LP L I + EHL+ G
Sbjct: 214 VSTQEVESLREKVYATLEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 273
Query: 171 GAPTQTLLMEMLH 183
P T LMEML
Sbjct: 274 DTPIDTFLMEMLE 286
>gi|67464488|pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 190 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 241
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 40 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 94
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 95 QVQHGKEGSILLVTGQEVELTTVA 118
>gi|351700859|gb|EHB03778.1| Nuclear receptor subfamily 5 group A member 2 [Heterocephalus
glaber]
Length = 410
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 66 QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFT 125
QVDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL + +
Sbjct: 271 QVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLTNLMS 330
Query: 126 QVTHKLSELK 135
+ +L+
Sbjct: 331 HAQELVGKLR 340
>gi|358342696|dbj|GAA50141.1| nuclear receptor subfamily 5 group A member 3 [Clonorchis sinensis]
Length = 1053
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q+ DDQ+ LLQ+ W+D+L LD + + P E L + + +L + LG +
Sbjct: 782 FAQLDTDDQILLLQNCWADLLCLDCCWRSL--PTPTEIRLTSSKCINLEAARELGAEEIV 839
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
+R Q+T L++L+ P+
Sbjct: 840 ERMLQLTQYLTQLQLDLVEYACLKVIVLMQPDLKNLKAAEHVREYQESVRRMLMDYIVNS 899
Query: 140 ----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
DKFG+LMS +PEL + L + +LLME+L +
Sbjct: 900 SGKRDKFGRLMSRIPELQLTSHTARMMLVDLDLSAYLSNNSLLMELLRS 948
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ-------I 65
+L+ D+ +Y C+K ++L+ PD++ + HV E E V++ L+DY + + + +
Sbjct: 851 QLQLDLVEYACLKVIVLMQPDLKNLKAAEHVREYQESVRRMLMDYIVNSSGKRDKFGRLM 910
Query: 66 QVDDQMKLLQHSWSDMLV-LDHMHQRMHNALPDETTLHNGQKF 107
+++L H+ MLV LD +N+L E + Q+F
Sbjct: 911 SRIPELQLTSHTARMMLVDLDLSAYLSNNSLLMELLRSDIQRF 953
>gi|431921892|gb|ELK19095.1| Nuclear receptor subfamily 5 group A member 2 [Pteropus alecto]
Length = 200
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 66 QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL---GLLGVPTLRD 122
QVDDQMKLLQ+ WS++LVLDH+++++ + L GQ+ + ++ + +L
Sbjct: 35 QVDDQMKLLQNCWSELLVLDHIYRQVVHGKEGSIFLVTGQQVECATIVPQAGATLSSLMG 94
Query: 123 RFTQVTHKLSELKFPN----CDKFGKLMSILPEL 152
+ KL L+F C KF L S++ +
Sbjct: 95 HAQDLVAKLRALQFDQREFVCLKFLVLFSLVCDF 128
>gi|339247125|ref|XP_003375196.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
gi|316971506|gb|EFV55265.1| putative ligand-binding domain of nuclear hormone receptor
[Trichinella spiralis]
Length = 567
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 70 QMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTH 129
QM LLQ W+++ VLD + R+ LPD + G + S+ LL + R + ++ +
Sbjct: 379 QMLLLQSVWAELHVLDFTYYRLQGKLPDTVSFKTGHRLKATSVALLALTEGRSEWDKLCN 438
Query: 130 KLSELKFPNCD 140
+L+ + F D
Sbjct: 439 QLNAIGFDRYD 449
Score = 42.7 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 16 FDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
FD DY+ +K+L+LLNP+ + N+ V EG +++++A L+Y
Sbjct: 445 FDRYDYVAIKYLILLNPNYSKLRNKALVIEGRQRIREAWLEY 486
>gi|348570102|ref|XP_003470836.1| PREDICTED: LOW QUALITY PROTEIN: steroidogenic factor 1-like [Cavia
porcellus]
Length = 461
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+LL+ DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILLSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSVQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL 109
+ +++V DQM LLQ+ WS++LV DH+++++ L GQ+ +L
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQVQYGKEGSILLVTGQEVEL 333
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +K D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 288 VGQIFDRVLSELSMKMRALRMDQAEYVALKAIILLNPDVKGLKNRLEVEALREKMYSCLD 347
Query: 56 DYC 58
+YC
Sbjct: 348 EYC 350
>gi|350579647|ref|XP_003480654.1| PREDICTED: steroidogenic factor 1-like [Sus scrofa]
Length = 140
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 88 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 139
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 40 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 89
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE+ E+V +L +YC T YP
Sbjct: 338 EMKMDKTELGCLRAIVLFNPDAKGLSAVQEVEQLREKVYASLEEYCKTRYP 388
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 47/196 (23%)
Query: 36 GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHM------ 87
GI T + E E+ ++D+ I Y + ++DQ+ LLQ SW ++ ++D
Sbjct: 27 GIRTITIICEMVERELVMVIDWAKRIPGYTSLCLNDQVVLLQASWLEVFMIDLAFRSMPY 86
Query: 88 -------------HQRMHNALPDETTLH-------------NGQKFDLL-SLGLLG---- 116
H++ A DE H + Q+F L ++ L+
Sbjct: 87 DNKLVYACDMVMGHKQSRAAGLDEINRHAFELVTKYRSISMDKQEFACLKAIALVNSDSR 146
Query: 117 -------VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHC 168
V +++ + + L +P +F +L+ LPEL I+SRG E L+
Sbjct: 147 NLTDVSRVESVQGTLYLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFSIKV 206
Query: 169 NGGAPTQTLLMEMLHA 184
G P LL+EML A
Sbjct: 207 AGEVPMYNLLLEMLEA 222
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 345 EMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYP 395
>gi|71987242|ref|NP_001024551.1| Protein NHR-25, isoform b [Caenorhabditis elegans]
gi|37619810|emb|CAE48496.1| Protein NHR-25, isoform b [Caenorhabditis elegans]
Length = 492
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + +H L + + NG + + + LLG T
Sbjct: 293 FSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMSNGDEVPVGLVALLGNQTFV 352
Query: 122 DRFTQVTHKLSELKFPNCDK--------FGKLMSILPELHEIASRGEEHLYHKHCNGGAP 173
+ V +L + F N D F + M P + SR + C
Sbjct: 353 SSWNDVVIRLRNMGFTNFDYCAFRFLALFDQSMDSFPAVSTARSRVLQSWREVRCT---- 408
Query: 174 TQTLLMEMLHAKRK 187
T +E+ R+
Sbjct: 409 --TAFLEIFEQIRR 420
>gi|7677118|gb|AAF67039.1|AF179215_1 NHR-25 beta [Caenorhabditis elegans]
Length = 492
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + +H L + + NG + + + LLG T
Sbjct: 293 FSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMSNGDEVPVGLVALLGNQTFV 352
Query: 122 DRFTQVTHKLSELKFPNCDK--------FGKLMSILPELHEIASRGEEHLYHKHCNGGAP 173
+ V +L + F N D F + M P + SR + C
Sbjct: 353 SSWNDVVIRLRNMGFTNFDYCAFRFLALFDQSMDSFPAVSTARSRVLQSWREVRCT---- 408
Query: 174 TQTLLMEMLHAKRK 187
T +E+ R+
Sbjct: 409 --TAFLEIFEQIRR 420
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 333 EMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYP 383
>gi|18202151|sp|O76202.1|USP_CHOFU RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|3420010|gb|AAC31795.1| Ultraspiracle [Choristoneura fumiferana]
Length = 472
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR V+ E++ L
Sbjct: 346 VGAIFDRVLSELSLKMRTLRMDQAEYVALKAIVLLNPDVKGLKNRQEVDVLREKMFSCLD 405
Query: 56 DYC 58
DYC
Sbjct: 406 DYC 408
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 323 EMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYP 373
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 311 EMKMDKTELGCLRSIILFNPDVRGLKSSQDVEVLREKVYAALEEYTRTTYP 361
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 116 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 175
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 176 EYTRTTHP 183
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ + + DQ++LL+ W+++L+ H+ M D L G + + +GV +
Sbjct: 63 FTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ--DAIVLATGLTVNKSTAHAVGVGNIY 120
Query: 122 DR-FTQVTHKLSELKF-------------------------------------------- 136
DR +++ +K+ E+K
Sbjct: 121 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 180
Query: 137 --PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
PN +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 181 THPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG 231
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 333 EMKMDKTELGCLRSVILFNPDVRGLKSSQEVELLREKVYAALEEYTRTTYP 383
>gi|149047895|gb|EDM00511.1| rCG37716, isoform CRA_b [Rattus norvegicus]
Length = 432
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGL 114
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ L GL
Sbjct: 364 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVTELVSGL 416
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T YP
Sbjct: 310 EMKMDKTELGCLRSVILFNPDVRGLKSSQEVELLREKVYAALEEYTRTTYP 360
>gi|39654795|pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
gi|39654796|pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
gi|158430601|pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
gi|315113247|pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 138 VGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 197
Query: 56 DYC 58
+YC
Sbjct: 198 EYC 200
>gi|384081145|dbj|BAM11008.1| steroidogenic factor 1, partial [Buergeria buergeri]
Length = 403
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++V DQM LLQ+ WS++LV DH++++M ++ + L GQ+ +L + TL
Sbjct: 278 FKKLEVSDQMILLQNCWSELLVFDHIYRQMQHSKENSILLVTGQEIELSDIAGQAGSTLN 337
Query: 122 D 122
+
Sbjct: 338 N 338
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D +++C+KFL+L + D + + N++ + E+V AL++Y + YPQ
Sbjct: 352 SLQVDRQEFVCLKFLILFSLDEKFLENQSLAKSAQEKVNSALMEYTMCHYPQ 403
>gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis]
Length = 410
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPD++G+ NR VE E++ L
Sbjct: 284 VGQIFDRVLSELSLKMRHLRMDQAEYVALKAIILLNPDIKGLGNRQEVEVLREKMYSCLD 343
Query: 56 DYC 58
+YC
Sbjct: 344 EYC 346
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D S+ C+K ++L NPD+RG+ R +E EQV L ++C T +P
Sbjct: 353 LNIDRSELSCLKAIILFNPDLRGLKGRNEIEVCREQVYACLDEHCRTEHP 402
>gi|14278415|pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 139 VGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 198
Query: 56 DYC 58
+YC
Sbjct: 199 EYC 201
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 177 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 236
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 237 EYTRTTHP 244
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 177 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 236
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 237 EYTRTTHP 244
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+ D ++ C++ ++L NPD +G+ T VE E+V +L +YC T YP+
Sbjct: 437 EMNMDKTELGCLRAIVLFNPDAKGLSAITDVEALREKVYASLEEYCKTHYPE 488
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 176 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 235
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 236 EYTRTTHP 243
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 177 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 236
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 237 EYTRTTHP 244
>gi|60892894|gb|AAX37293.1| nuclear receptor usp/RXR, partial [Caliroa cerasi]
Length = 258
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ +R VE E+V AL +Y A P
Sbjct: 184 EMKMDKTELGCLRSIILFNPDVRGLKSRQEVELLREKVYAALEEYTRAARP 234
>gi|124431279|gb|ABN11288.1| ultraspiracle protein isoform 2 [Helicoverpa armigera]
Length = 286
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 161 VGQIFDRVLSELSLKMRSLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 220
Query: 56 DYC 58
+YC
Sbjct: 221 EYC 223
>gi|124431277|gb|ABN11287.1| ultraspiracle protein isoform 1 [Helicoverpa armigera]
Length = 288
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 163 VGQIFDRVLSELSLKMRSLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 222
Query: 56 DYC 58
+YC
Sbjct: 223 EYC 225
>gi|170578454|ref|XP_001894417.1| Nuclear hormone receptor family member nhr-25 [Brugia malayi]
gi|158599012|gb|EDP36743.1| Nuclear hormone receptor family member nhr-25, putative [Brugia
malayi]
Length = 543
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ Q+ VD+Q+ L+ SW+ + VLD ++ LP N + ++ L+G TL
Sbjct: 357 FEQLPVDNQIALIYASWAPIHVLDFTFHILYCHLPISIQFGNSPLL-MSTICLMGFNTLA 415
Query: 122 DRFTQVTHKLSELKFPNCD 140
RF + KL L F CD
Sbjct: 416 PRFNESCSKLQSLNFDRCD 434
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 288 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 347
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 348 EYTRTTHP 355
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ + + DQ++LL+ W+++L+ H+ M D L G + + +GV +
Sbjct: 235 FTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ--DAIVLATGLTVNKSTAHAVGVGNIY 292
Query: 122 DR-FTQVTHKLSELKF-------------------------------------------- 136
DR +++ +K+ E+K
Sbjct: 293 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 352
Query: 137 --PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
PN +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 353 THPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG 403
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 288 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 347
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 348 EYTRTTHP 355
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ + + DQ++LL+ W+++L+ H+ M D L G + + +GV +
Sbjct: 235 FTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ--DAIVLATGLTVNKSTAHAVGVGNIY 292
Query: 122 DR-FTQVTHKLSELKF-------------------------------------------- 136
DR +++ +K+ E+K
Sbjct: 293 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 352
Query: 137 --PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
PN +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 353 THPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG 403
>gi|409178669|gb|AFV25500.1| ultraspiracle, partial [Drosophila caribiana]
Length = 418
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L D+C +P
Sbjct: 355 RLNLDRRELSCLKAIILYNPDIRGIKNRADIELCREKVYACLDDHCRVEHP 405
>gi|7677116|gb|AAF67038.1|AF179214_1 NHR-25 alpha [Caenorhabditis elegans]
Length = 568
Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + +H L + + NG + + + LLG T
Sbjct: 369 FSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMSNGDEVPVGLVALLGNQTFV 428
Query: 122 DRFTQVTHKLSELKFPNCD 140
+ V +L + F N D
Sbjct: 429 SSWNDVVIRLRNMGFTNFD 447
>gi|71987238|ref|NP_001024550.1| Protein NHR-25, isoform a [Caenorhabditis elegans]
gi|17380140|sp|Q19345.1|NHR25_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-25
gi|3875724|emb|CAA91028.1| Protein NHR-25, isoform a [Caenorhabditis elegans]
Length = 572
Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + +H L + + NG + + + LLG T
Sbjct: 373 FSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMSNGDEVPVGLVALLGNQTFV 432
Query: 122 DRFTQVTHKLSELKFPNCD 140
+ V +L + F N D
Sbjct: 433 SSWNDVVIRLRNMGFTNFD 451
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 439 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 488
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
>gi|112820331|gb|ABI24019.1| retinoid X receptor beta [Sus scrofa]
Length = 484
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>gi|194768727|ref|XP_001966463.1| GF21986 [Drosophila ananassae]
gi|190617227|gb|EDV32751.1| GF21986 [Drosophila ananassae]
Length = 512
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR+ +E E+V L ++C +P
Sbjct: 404 LNLDRRELTCLKAIILYNPDIRGIKNRSEIEMCREKVYACLDEHCRQEHP 453
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 434 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 487
Score = 35.8 bits (81), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 464 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 523
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 524 TFLMEMLEA 532
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 433 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 486
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 463 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 522
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 523 TFLMEMLEA 531
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE+ E+V +L +YC YP
Sbjct: 342 EMKMDKTELGCLRAIVLFNPDAKGVSAVSEVEQLREKVYASLEEYCKMHYP 392
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 374 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 427
Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 404 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 463
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 464 TFLMEMLEA 472
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 431 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 484
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 461 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 520
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 521 TFLMEMLEA 529
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 434 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 487
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 464 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 523
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 524 TFLMEMLEA 532
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 428 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 481
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 458 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 517
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 518 TFLMEMLEA 526
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 429 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 482
Score = 35.8 bits (81), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 459 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 518
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 519 TFLMEMLEA 527
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 402 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 455
Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 432 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 491
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 492 TFLMEMLEA 500
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 422 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 475
Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 452 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 511
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 512 TFLMEMLEA 520
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 291 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 340
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 428 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 481
Score = 35.8 bits (81), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 458 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 517
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 518 TFLMEMLEA 526
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 43.9 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 471 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 524
Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 398 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 457
Query: 95 ----LPDETTLHNGQKFDLLSLGLL-----------------GVPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 458 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCK 517
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 518 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 569
>gi|85035498|gb|ABC68963.1| steroidogenic factor 1 [Apalone mutica]
Length = 156
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 78/181 (43%)
Query: 3 NYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
NY ++ EL L+ D +++C+KFL+L + DV+ + N + +E E+ ALL+Y
Sbjct: 49 NYLVLRAQELVLHLQSLQVDRQEFVCLKFLILFSLDVKCLENHSLAKEAQEKANAALLEY 108
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
YP H+G
Sbjct: 109 TACHYP--------------------------------------HSG------------- 117
Query: 118 PTLRDRFTQVTHKLSELKFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTL 177
D+F Q+ +L+E++ ++ + EE+LYHKH +G P L
Sbjct: 118 ----DKFRQLLLRLAEVR------------------ALSMQAEEYLYHKHLSGEVPCNNL 155
Query: 178 L 178
L
Sbjct: 156 L 156
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 375 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 428
Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 302 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 361
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 362 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCK 421
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 422 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 473
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
E+ D ++ C++ ++L NP+ +G+ + THVE E+V AL DYC Y
Sbjct: 309 EMNMDKTELGCLRAIVLFNPEAKGLKSVTHVENLRERVYSALEDYCRQNY 358
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 433 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 486
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 360 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 419
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 420 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCK 479
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 480 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 531
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 372 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 425
Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 402 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 461
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 462 TFLMEMLEA 470
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 355 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 408
Score = 36.2 bits (82), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 385 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 444
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 445 TFLMEMLEA 453
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 415 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 468
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 445 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 504
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 505 TFLMEMLEA 513
>gi|147223295|emb|CAN13297.1| retinoid X receptor, beta [Sus scrofa]
Length = 388
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 333 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 386
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 43.9 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 474 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 527
Score = 39.3 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 504 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 563
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 564 TFLMEMLEA 572
>gi|324505531|gb|ADY42376.1| Nuclear hormone receptor family member nhr-25 [Ascaris suum]
Length = 529
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ-KFDLLSLGLLGVPTL 120
+ ++ V+DQ+ L+ +W+ + VLD + +HN LP N + ++ L+G L
Sbjct: 355 FDKLHVEDQIALIYSAWAPIHVLDFTYHLLHNHLPVSIQFGNSTFSLAMSAVCLMGFDAL 414
Query: 121 RDRFTQVTHKLSELKFPNCD 140
+F ++ +L + F CD
Sbjct: 415 TPKFNEICARLHAMHFDRCD 434
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 361
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ ++ VE E+V AL +Y T +P
Sbjct: 301 EMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEYTRTTHP 351
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ M + D L G S GV
Sbjct: 228 IPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME--VKDGIVLATGLTIHRNSAHQAGVG 285
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ E+K +
Sbjct: 286 TIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEY 345
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G AP T LMEML +
Sbjct: 346 TRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLMEMLES 399
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 417 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 470
Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 447 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 506
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 507 TFLMEMLEA 515
>gi|195447730|ref|XP_002071344.1| GK25746 [Drosophila willistoni]
gi|194167429|gb|EDW82330.1| GK25746 [Drosophila willistoni]
Length = 483
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 373 LNLDRRELTCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRQEHP 422
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 43.9 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
>gi|189031270|gb|ACD74808.1| ultraspiracle isoform 1 [Helicoverpa armigera]
Length = 414
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 289 VGQIFDRVLSELSLKMRSLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 348
Query: 56 DYC 58
+YC
Sbjct: 349 EYC 351
>gi|426363012|ref|XP_004048641.1| PREDICTED: steroidogenic factor 1 [Gorilla gorilla gorilla]
Length = 461
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ ++ VE E+V AL +Y T +P
Sbjct: 301 EMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEYTRTTHP 351
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ M + D L G S GV
Sbjct: 228 IPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME--VKDGIVLATGLTIHRNSAHQAGVG 285
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ E+K +
Sbjct: 286 TIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEY 345
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G AP T LMEML +
Sbjct: 346 TRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLMEMLES 399
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 244 LQVDAAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 293
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ ++ VE E+V AL +Y T +P
Sbjct: 301 EMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEYTRTTHP 351
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ M + D L G S GV
Sbjct: 228 IPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME--VKDGIVLATGLTIHRNSAHQAGVG 285
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ E+K +
Sbjct: 286 TIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEY 345
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G AP T LMEML +
Sbjct: 346 TRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLMEMLES 399
>gi|403299848|ref|XP_003940686.1| PREDICTED: steroidogenic factor 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403299850|ref|XP_003940687.1| PREDICTED: steroidogenic factor 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 461
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMALLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSVLLVTGQEVELTTVA 337
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>gi|297685326|ref|XP_002820243.1| PREDICTED: steroidogenic factor 1 isoform 1 [Pongo abelii]
gi|395740947|ref|XP_003777496.1| PREDICTED: steroidogenic factor 1 isoform 2 [Pongo abelii]
Length = 461
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|355567920|gb|EHH24261.1| Steroidogenic factor 1, partial [Macaca mulatta]
Length = 427
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 375 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 426
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 225 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 279
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 280 QVQHGKEGSILLVTGQEVELTTVA 303
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N T V+E E+ ALLDY + YP
Sbjct: 333 EFVCLKFIILFSLDLKFLNNHTLVKEAQEKANAALLDYTLCHYP 376
>gi|296190799|ref|XP_002743341.1| PREDICTED: steroidogenic factor 1 [Callithrix jacchus]
Length = 490
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 31 NPDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMH 88
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH++
Sbjct: 258 QPAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMALLQNCWSELLVFDHIY 312
Query: 89 QRMHNALPDETTLHNGQKFDLLSL 112
+++ + L GQ+ +L ++
Sbjct: 313 RQVQHGKEGSVLLVTGQEVELTTV 336
>gi|384940122|gb|AFI33666.1| steroidogenic factor 1 [Macaca mulatta]
Length = 461
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N T V+E E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHTLVKEAQEKANAALLDYTLCHYP 410
>gi|332229985|ref|XP_003264167.1| PREDICTED: steroidogenic factor 1 [Nomascus leucogenys]
gi|397473203|ref|XP_003808107.1| PREDICTED: steroidogenic factor 1 isoform 1 [Pan paniscus]
Length = 461
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE+ E+V +L +YC YP
Sbjct: 343 EMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYASLEEYCKQRYP 393
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 379 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 432
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 306 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 365
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 366 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCK 425
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 426 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 477
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 305 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 358
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 232 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 291
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 292 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCK 351
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 352 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 403
>gi|20070193|ref|NP_004950.2| steroidogenic factor 1 [Homo sapiens]
gi|3121738|sp|Q13285.2|STF1_HUMAN RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1;
AltName: Full=Adrenal 4-binding protein; AltName:
Full=Fushi tarazu factor homolog 1; AltName:
Full=Nuclear receptor subfamily 5 group A member 1;
AltName: Full=Steroid hormone receptor Ad4BP
gi|2052388|gb|AAB53105.1| steroidogenic factor 1 [Homo sapiens]
gi|21618439|gb|AAH32501.1| Nuclear receptor subfamily 5, group A, member 1 [Homo sapiens]
gi|119607997|gb|EAW87591.1| nuclear receptor subfamily 5, group A, member 1 [Homo sapiens]
gi|167773139|gb|ABZ92004.1| nuclear receptor subfamily 5, group A, member 1 [synthetic
construct]
gi|208966890|dbj|BAG73459.1| nuclear receptor subfamily 5, group A, member 1 [synthetic
construct]
gi|325463267|gb|ADZ15404.1| nuclear receptor subfamily 5, group A, member 1 [synthetic
construct]
gi|325495523|gb|ADZ17367.1| steroidogenic factor 1 nuclear receptor [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|109110256|ref|XP_001082881.1| PREDICTED: steroidogenic factor 1-like isoform 1 [Macaca mulatta]
Length = 461
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N T V+E E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHTLVKEAQEKANAALLDYTLCHYP 410
>gi|2077920|dbj|BAA13546.1| AdBP4 [Homo sapiens]
Length = 461
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE+ E+V +L +YC YP
Sbjct: 338 EMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYASLEEYCKQRYP 388
>gi|161769557|gb|ABX79144.1| ultraspiracle [Spodoptera litura]
gi|388325217|gb|AFK27932.1| Ecdysone receptor [Spodoptera litura]
Length = 467
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELK-----FDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK FD ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 342 VGQIFDRVLSELSLKMRALRFDQAEYVALKAIILLNPDVKGLKNRLDVELLREKMFSCLD 401
Query: 56 DY 57
+Y
Sbjct: 402 EY 403
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 311 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 364
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 341 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 400
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 401 TFLMEMLEA 409
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE+ E+V +L +YC YP
Sbjct: 327 EMKMDKTELGCLRAIVLFNPDAKGLQSVQEVEQLREKVYASLEEYCKQRYP 377
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
EL+ D ++ C++ ++L NP+ RG+ VE E+V AL D+C YP+
Sbjct: 351 ELRMDRTELGCLRAIVLFNPEARGLRCSAQVEALRERVYAALEDHCRQQYPE 402
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 429 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 478
>gi|409178681|gb|AFV25506.1| ultraspiracle, partial [Drosophila malerkotliana]
Length = 463
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 370 RLNLDRRELTCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRQEHP 420
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD RG+ + VE E+V AL +Y T+YP
Sbjct: 292 EMKMDKTELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYP 342
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 244 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 297
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D S+ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 314 DMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQ 367
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 67/172 (38%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH--NALPDETTLHN----------GQK 106
I + ++Q+DDQ+ LL+ W+++L+ H+ + + + T LH G
Sbjct: 241 IPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAI 300
Query: 107 FDLL----------------SLGLLG-----------------VPTLRDRFTQVTHKLSE 133
FD + LG L V LR+R +
Sbjct: 301 FDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCK 360
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 361 QKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 412
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD RG+ + VE E+V AL +Y T+YP
Sbjct: 293 EMKMDKTELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYP 343
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D +++ C+K ++LL+PD G+ + HVE E+ Q AL +Y YP
Sbjct: 325 SLHIDSAEFTCLKAIVLLSPDAPGVSDPAHVESIQEKAQCALEEYTRCQYP 375
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD RG+ + VE E+V AL +Y T+YP
Sbjct: 298 EMKMDKTELGCLRSIVLFNPDARGLTSCNDVEILREKVYAALEEYTRTSYP 348
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ ++ VE E+V AL +Y T +P
Sbjct: 256 EMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEYTRTTHP 306
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ M + D L G S GV
Sbjct: 183 IPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME--VKDGIVLATGLTIHRNSAHQAGVG 240
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ E+K +
Sbjct: 241 TIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSQQEVEMLREKVYAALEEY 300
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G AP T LMEML +
Sbjct: 301 TRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDAPIDTFLMEMLES 354
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 43.5 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 430 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 479
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 43.5 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 430 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 479
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++K D ++ C++ ++L NPD +G+ + + VE E+V +L +YC YP+
Sbjct: 388 DMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPE 439
>gi|402896452|ref|XP_003911313.1| PREDICTED: steroidogenic factor 1 [Papio anubis]
Length = 467
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 415 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 466
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 292 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVA 343
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N T V+E E+ ALLDY + YP
Sbjct: 373 EFVCLKFIILFSLDLKFLNNHTLVKEAQEKANAALLDYTLCHYP 416
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 172 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 221
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 116 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 175
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 176 TYCKQKYPEQQ 186
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 163 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 222
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 223 TFLMEMLEA 231
>gi|226479264|emb|CAX73127.1| nuclear receptor subfamily 5, group A, member 2 [Schistosoma
japonicum]
Length = 956
Score = 43.5 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 52 KALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS 111
+AL D+ + + DDQ+ L+Q+ W+D+L LD + + P E L + Q +L +
Sbjct: 682 RALPDFSL-----LDTDDQILLIQNCWADLLCLDCCWRSL--PTPSEIRLTSSQCINLEA 734
Query: 112 LGLLGVPTLRDRFTQVTHKLSELKFP----NCDKFGKLMSILPELHEIASRGEEHLYHKH 167
+G + +R Q+T L+ L+ C K LM P+L + + YH+
Sbjct: 735 AREMGAEEIVERILQLTQSLTRLQLDVVEYACLKVIVLMQ--PDLSNLKANSRVRSYHE- 791
Query: 168 CNGGAPTQTLLME 180
+ LLME
Sbjct: 792 -----SVRRLLME 799
Score = 42.7 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ D+ +Y C+K ++L+ PD+ + + V HE V++ L++Y + P I
Sbjct: 757 LQLDVVEYACLKVIVLMQPDLSNLKANSRVRSYHESVRRLLMEYVAKSSPDI 808
>gi|85035470|gb|ABC68962.1| steroidogenic factor 1 [Chrysemys picta]
Length = 156
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALL+Y I YP
Sbjct: 65 LQVDRQEFVCLKFLILFSLDVKYLENHSLAKDAQEKANAALLEYTICHYP 114
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 50/156 (32%)
Query: 73 LLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTL------------ 120
LLQ+ WS++LV DH+++++ + L GQ+ ++ ++ L
Sbjct: 1 LLQNCWSELLVFDHIYRQVQHGKEHSMLLVTGQEVEMATIAAQAGSNLNNLVLRAQELVL 60
Query: 121 --------RDRFTQV--------------THKLSE----------LKFPNC------DKF 142
R F + H L++ L++ C DKF
Sbjct: 61 HLHSLQVDRQEFVCLKFLILFSLDVKYLENHSLAKDAQEKANAALLEYTICHYPHAADKF 120
Query: 143 GKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
+L+ L E+ ++ + EE+LYHKH +G P LL
Sbjct: 121 RQLLLRLAEIRSLSMQAEEYLYHKHLSGEVPCNNLL 156
>gi|195046041|ref|XP_001992077.1| GH24408 [Drosophila grimshawi]
gi|193892918|gb|EDV91784.1| GH24408 [Drosophila grimshawi]
Length = 528
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR+ VE E+V L ++C +P
Sbjct: 420 LNLDRRELACLKAIILYNPDIRGIKNRSDVELCREKVYACLDEHCRLEHP 469
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 340 DMQMDKTELGCLRAIVLFNPDAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQ 393
Score = 37.0 bits (84), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R++ + K+P +F KL+ LP L
Sbjct: 359 PDAKGLSNTSEVELL----------REKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRS 408
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 409 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 438
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 432 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 481
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 244 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 297
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 83 VLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG------VPTLRDRFTQVTHKLSELKF 136
VL + +M + D+T L + L + G V LR++ + K+
Sbjct: 234 VLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKY 293
Query: 137 PNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 294 PEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 342
>gi|410932169|ref|XP_003979466.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like,
partial [Takifugu rubripes]
Length = 399
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDL 109
+ +++V DQMKLL + WS++LVLDH+ +++ + D L GQ+ L
Sbjct: 306 FKELRVGDQMKLLHNCWSELLVLDHIFRQVQHGQEDSILLVTGQEVAL 353
>gi|388325219|gb|AFK27933.1| ultraspiracle [Spodoptera litura]
Length = 414
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELK-----FDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK FD ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 289 VGQIFDRVLSELSLKMRALRFDQAEYVALKAIILLNPDVKGLKNRLDVELLREKMFSCLD 348
Query: 56 DY 57
+Y
Sbjct: 349 EY 350
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 233 LQVDSAEYSCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 282
>gi|40805169|gb|AAR91925.1| retinoid X receptor beta [Cervus elaphus]
Length = 75
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 12 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 65
>gi|355717628|gb|AES06000.1| retinoid X receptor, beta [Mustela putorius furo]
Length = 159
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 39 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 98
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 99 TYCKQKYPEQQ 109
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 86 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 145
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 146 TFLMEMLEA 154
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 115 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 174
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 175 TYCKQKYPEQQ 185
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 128 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 181
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 158 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 217
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 218 TFLMEMLEA 226
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 87 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 146
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 147 TYCKQKYPEQQ 157
>gi|325495571|gb|ADZ17391.1| steroidogenic factor 1 nuclear receptor [Homo sapiens]
Length = 421
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 369 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 420
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 327 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 370
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D S+ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 203 DMQMDKSELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQ 256
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D S+ C+K ++L NPD+RG+ R VE E++ L ++C T +P
Sbjct: 367 LNIDRSELSCLKAIILFNPDIRGLKCRADVEVCREKIYACLDEHCRTEHP 416
>gi|444707258|gb|ELW48542.1| Steroidogenic factor 1 [Tupaia chinensis]
Length = 976
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 73/167 (43%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWS 79
+++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 882 EFVCLKFLILFSLDVKLLNNHSLVKDAQEKANAALLDYTLCHYP---------------- 925
Query: 80 DMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNC 139
H G KF L L L+ V L
Sbjct: 926 ----------------------HCGDKFQQLLLSLVEVRAL------------------- 944
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ + +E+LYHKH P LL+EML AK+
Sbjct: 945 ----------------SMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 975
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 801 FKELEVADQMTLLQNCWSELLVFDHVYRQIQHGKEGSILLVTGQEVELSTVA 852
>gi|409178663|gb|AFV25497.1| ultraspiracle, partial [Drosophila funebris]
Length = 433
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 335 LNLDRRELSCLKAIILYNPDIRGIKNRAEIELCREKVYACLDEHCRVEHP 384
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 430 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 479
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella]
Length = 415
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ +R VE E++ L
Sbjct: 289 VGQIFDRVLSELALKMRSLPVDQAEYVALKAVILLNPDVKGLNSRQEVEVLREKMYSCLD 348
Query: 56 DYC 58
+YC
Sbjct: 349 EYC 351
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 332 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 381
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 421 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQ 474
Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 451 VEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 510
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 511 TFLMEMLEA 519
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>gi|262263189|dbj|BAI48097.1| retinoid X receptor, beta [Sus scrofa]
Length = 106
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 3 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 56
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 33 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 92
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 93 TFLMEMLEA 101
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++K D ++ C++ ++L NPD +G+ + + VE E+V +L +YC YP+
Sbjct: 328 DMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEYCKQQYPE 379
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + +DDQ+ LL+ W+++L+ H+ + + D L +G S GV
Sbjct: 255 IPHFSDLPIDDQVILLRAGWNELLIAAFSHRSID--VKDGILLASGLHVHRSSAHQAGVG 312
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ ++K +
Sbjct: 313 TIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEY 372
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 373 CKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 426
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>gi|327290672|ref|XP_003230046.1| PREDICTED: retinoic acid receptor RXR-beta-like, partial [Anolis
carolinensis]
Length = 388
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 285 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVELLREKVYASLESYCKQKYPEQQ 338
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHE 154
PD L N + +LL R++ + K+P +F KL+ LP L
Sbjct: 304 PDAKGLSNPGEVELL----------REKVYASLESYCKQKYPEQQGRFAKLLLRLPALRS 353
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 354 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 383
>gi|220401|dbj|BAA01441.1| embryonal LTR binding protein [Mus musculus domesticus]
Length = 465
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 64 QIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL 110
+++V DQM LLQ+ WS++LVLDH+++++ D L +GQ+ L
Sbjct: 366 ELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVSGQEVTEL 412
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL ++K D ++ C++ ++L NPD +G+ + + VE E+V +L
Sbjct: 106 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLE 165
Query: 56 DYCITAYPQ 64
+YC YP+
Sbjct: 166 EYCKQQYPE 174
>gi|149036142|gb|EDL90808.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b
[Rattus norvegicus]
Length = 134
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 26 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 75
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+ +G+ + VE E+V AL D+C YP
Sbjct: 331 EMKMDRTELGCLRAVVLFNPEAKGLRSTAQVEALREKVYAALEDHCRQQYP 381
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 281 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 330
>gi|297270159|ref|XP_002800023.1| PREDICTED: steroidogenic factor 1-like isoform 2 [Macaca mulatta]
Length = 538
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 363 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTVA 414
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 486 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 537
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N T V+E E+ ALLDY + YP
Sbjct: 444 EFVCLKFIILFSLDLKFLNNHTLVKEAQEKANAALLDYTLCHYP 487
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL ++K D ++ C++ ++L NPD +G+ + + VE E+V +L
Sbjct: 81 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLE 140
Query: 56 DYCITAYPQ 64
+YC YP+
Sbjct: 141 EYCKQQYPE 149
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + +DDQ+ LL+ W+++L+ H+ + + D L +G S GV
Sbjct: 25 IPHFSDLPIDDQVILLRAGWNELLIAAFSHRSID--VKDGILLASGLHVHRSSAHQAGVG 82
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ ++K +
Sbjct: 83 TIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEY 142
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 143 CKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 196
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 372 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 421
>gi|198470596|ref|XP_001355352.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
gi|198145527|gb|EAL32409.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
Length = 487
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 379 LNLDRRELACLKAIILYNPDMRGIKNRAEIEICREKVYACLDEHCRVEHP 428
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T +P
Sbjct: 224 EMKMDKTELGCLRSVILFNPDVRGLKSAPDVEALREKVYAALEEYTRTTHP 274
>gi|397473205|ref|XP_003808108.1| PREDICTED: steroidogenic factor 1 isoform 2 [Pan paniscus]
Length = 539
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL 112
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++
Sbjct: 364 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTV 414
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 487 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 538
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 445 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 488
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 337 LHVDAAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 386
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 443 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQ 496
Score = 36.2 bits (82), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 473 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 532
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 533 TFLMEMLEA 541
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPD-VRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ +C++ ++L NPD VRG+ +R VE E+V AL +Y T +P
Sbjct: 310 EMKMDKTELVCLRSVILFNPDVVRGLKSRQEVELLREKVYAALEEYTRTTHP 361
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y + YP
Sbjct: 191 LQVDSAEYSCLKAIALFTPDACGLSDPAHVEGLQEKAQVALTEYVRSQYP 240
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 267 RLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 317
>gi|16797872|gb|AAL29194.1|AF323681_1 nuclear receptor AmNR2 [Acropora millepora]
Length = 448
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L D +++ C+ L+LL+PD + NR VEE +V L DY + YP ++ + KL
Sbjct: 346 LNLDQNEFACLSALVLLSPDTPELKNRAKVEELQAKVNSILRDYAASLYP-LKPNRLGKL 404
Query: 74 LQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG 113
L L L + AL + TL K D+ LG
Sbjct: 405 L-------LCLPTLRMFSEKALENYVTLEFFGKLDMPPLG 437
>gi|425578|gb|AAB28339.1| embryonal long terminal repeat-binding protein [Mus musculus]
Length = 331
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQK 106
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQE 331
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPD-VRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ +C++ ++L NPD VRG+ +R VE E+V AL +Y T +P
Sbjct: 335 EMKMDKTELVCLRSVILFNPDVVRGLKSRQEVELLREKVYAALEEYTRTTHP 386
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP+ Q
Sbjct: 356 DMRMDKTELGCLRAIILFNPDAKGLSSPSEVEALRERVYASLETYCKQKYPEQQ 409
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR+R + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 386 VEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 445
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 446 TFLMEMLEA 454
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE+ E+V +L +YC YP
Sbjct: 336 EMKMDKTELGCLRAIVLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYP 386
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++Q+DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 105 IPHFSELQLDDQVTLLRAGWNELLIASFSHRSI--AIKDGILLATGLHVHRNSAHSAGVG 162
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 163 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAY 222
Query: 132 SELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ K+P +F KL+ LP L I + +EHL+ G P T LMEML
Sbjct: 223 CKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFFFKLIGDTPIDTFLMEML 274
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+
Sbjct: 178 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPE 229
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 35 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 84
>gi|351709342|gb|EHB12261.1| Nuclear receptor subfamily 5 group A member 2 [Heterocephalus
glaber]
Length = 391
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 64 QIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD 108
+++VDDQM LLQ+ WS++L+LDH++ ++ + L GQ+ D
Sbjct: 328 ELKVDDQMNLLQNCWSELLILDHIYWQVVHGKEGSILLVTGQQMD 372
>gi|194912875|ref|XP_001982583.1| GG12659 [Drosophila erecta]
gi|190648259|gb|EDV45552.1| GG12659 [Drosophila erecta]
Length = 507
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 399 LNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 448
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 421 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 474
Score = 35.4 bits (80), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 451 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 510
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 511 TFLMEMLEA 519
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 301 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 350
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+
Sbjct: 360 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPE 411
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+
Sbjct: 356 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPE 407
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 283 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 340
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 341 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAY 400
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 401 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 454
>gi|195477854|ref|XP_002100326.1| GE16988 [Drosophila yakuba]
gi|194187850|gb|EDX01434.1| GE16988 [Drosophila yakuba]
Length = 509
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 401 LNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 450
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 417 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 470
Score = 35.4 bits (80), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 447 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 506
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 507 TFLMEMLEA 515
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 277 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 326
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE+ E+V +L +YC YP
Sbjct: 341 EMKMDKTELGCLRAIVLFNPDAKGLQAVQEVEQLREKVYASLEEYCKQRYP 391
>gi|409178679|gb|AFV25505.1| ultraspiracle, partial [Drosophila santomea]
Length = 474
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 375 RLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 425
>gi|409178665|gb|AFV25498.1| ultraspiracle, partial [Drosophila limbata]
Length = 442
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 349 RLNLDRRELSCLKAIILYNPDIRGIKNRADIELCREKVYACLDEHCRVEHP 399
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 287 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 336
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 299 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 348
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 297 LQVDTAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERIQYP 346
>gi|409178677|gb|AFV25504.1| ultraspiracle, partial [Drosophila teissieri]
Length = 472
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 373 RLNLDRRELSCLKAIILYNPDIRGIKNRAEIEMCREKVYACLDEHCRLEHP 423
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 344
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 389 DMQMDKSELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 440
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 316 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 373
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 374 AIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 433
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 434 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 487
>gi|148694876|gb|EDL26823.1| nuclear receptor subfamily 5, group A, member 1, isoform CRA_a [Mus
musculus]
Length = 465
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 64 QIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL 110
+++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ L
Sbjct: 366 ELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVTEL 412
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 344
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 415 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 468
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 445 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 504
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 505 TFLMEMLEA 513
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 42.4 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 494 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCKQKYPEQQ 547
Score = 40.0 bits (92), Expect = 0.48, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 421 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGILLATGLHVHRNSAHSAGVGAI 480
Query: 95 ----LPDETTLHNGQKFDLLSLGLL-----------------GVPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 481 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLESYCK 540
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 541 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 592
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 305 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 354
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 292 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 341
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL ++K D ++ C++ ++L NPD +G+ N T VE E+V AL
Sbjct: 295 VGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLRNATRVEALREKVYAALE 354
Query: 56 DYCITAYP 63
++C +P
Sbjct: 355 EHCRRHHP 362
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 76 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 125
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 294 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 343
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 363 LHVDTAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 412
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 344
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 303 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 352
>gi|1581937|prf||2117333A embryonal long terminal repeat-binding protein
Length = 450
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 64 QIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL 110
+++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ L
Sbjct: 351 ELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVTEL 397
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 382 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 435
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 412 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 471
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 472 TFLMEMLEA 480
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 320 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 369
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 307 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 356
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP+ Q
Sbjct: 295 DMRMDKTELGCLRAIILFNPDAKGLSSPSEVEALRERVYASLETYCKQKYPEQQ 348
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR+R + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 325 VEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 384
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 385 TFLMEMLEA 393
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPD-VRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ +C++ ++L NPD VRG+ +R VE E+V AL +Y T +P
Sbjct: 320 EMKMDKTELVCLRSVILFNPDVVRGLKSRQEVELLREKVYAALEEYTRTTHP 371
>gi|268580405|ref|XP_002645185.1| C. briggsae CBR-NHR-25 protein [Caenorhabditis briggsae]
Length = 565
Score = 42.4 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++Q+DDQM LLQ SWS + ++D + +H L + G+ + ++ LLG
Sbjct: 368 FGKLQLDDQMNLLQTSWSTVHLVDITNAMIHGNLSPTYKITTGEDVSVGAVALLGYRLYV 427
Query: 122 DRFTQVTHKLSELKFPNCD 140
+ + + ++L + F D
Sbjct: 428 NTWNDIVNRLRNMGFTKFD 446
>gi|409194684|gb|AFV31632.1| retinoic X receptor beta, partial [Acanthopagrus schlegelii]
Length = 80
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 14 DMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLESYCKQKYPDQQ 67
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E++ D ++ C++ ++L NPDVRG+ + VE E++ + L
Sbjct: 265 VGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQSTQEVEILREKIYENLE 324
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 325 EYTRTTHP 332
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 268 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 317
>gi|146186462|gb|ABQ09283.1| retinoid X receptor beta 2 [Oryzias latipes]
Length = 73
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 19 DMQMDKTELGCLRAIVLFNPDAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQ 72
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 42.4 bits (98), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL +Y T +P
Sbjct: 224 EMKMDKTELGCLRSVILFNPDVRGLKSGPDVETLREKVYAALEEYTRTTHP 274
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 343 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 396
Score = 36.2 bits (82), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 270 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 329
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 330 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 389
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 390 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 441
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 42.4 bits (98), Expect = 0.093, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 623 LQVDSAEYSCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 672
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 274 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 323
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 355 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 408
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 282 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 341
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 342 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 401
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 402 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 355 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 408
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 282 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 339
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 340 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 399
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 400 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>gi|409178667|gb|AFV25499.1| ultraspiracle, partial [Zaprionus tuberculatus]
Length = 461
Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 363 LNLDRRELSCLKAIILYNPDIRGIKNRADIEMCREKVYACLDEHCRLEHP 412
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 106 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 155
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 355 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 408
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 282 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 339
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 340 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 399
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 400 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 16 FDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
D +++ C+K ++L NPD +G+ VE ++ Q AL DY T YP
Sbjct: 266 IDSAEFACLKAIVLFNPDSQGLSEPAQVENLQDRTQSALEDYIRTQYPN 314
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 42.0 bits (97), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + + DQ+ LL+ W+++L+ H+ + D L G + S +GV
Sbjct: 233 IPHFTSLPMSDQVLLLRAGWNELLIAAFSHRSIQAQ--DAIVLATGLTVNKTSAHAVGVG 290
Query: 119 TLRDR-FTQVTHKLSELKF---------------PNC----------------------- 139
+ DR +++ +K+ E+K P C
Sbjct: 291 NIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPTCRGIKSVQEVEMLREKIYGVLEEY 350
Query: 140 ---------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G P T LMEML +
Sbjct: 351 TRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKLIGDVPIDTFLMEMLES 404
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NP RGI + VE E++ L
Sbjct: 289 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPTCRGIKSVQEVEMLREKIYGVLE 348
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 349 EYTRTTHP 356
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 348 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 401
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 275 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 334
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 335 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 394
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 395 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 446
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 285 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 334
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPDV+ + + H+E E+V +L YC + YP
Sbjct: 409 DMMMDKTELGCLRAIVLFNPDVKNLSDSAHIESLREKVYASLEAYCRSKYP 459
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 352 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 405
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 382 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 441
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 442 TFLMEMLEA 450
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 348 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 401
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 275 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 332
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 333 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 392
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 393 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 446
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 42.0 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
++ D ++Y C+K LLL PDV+G+ + VE +Q Q L DY
Sbjct: 525 IRLDSTEYACLKALLLFKPDVKGLRDSLQVEALQDQAQIMLYDY 568
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 342 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 395
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 269 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 326
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 327 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 386
Query: 132 SELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 387 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 440
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 348 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 401
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 275 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 334
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 335 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 394
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 395 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 446
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NPD +G+ VE+ E+V +L +Y T YP+
Sbjct: 333 EMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPE 384
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 346 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 399
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 273 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 330
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 331 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 390
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 391 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 444
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 348 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 401
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 275 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 334
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 335 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 394
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 395 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 446
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 346 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 399
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 273 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 330
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 331 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 390
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 391 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 444
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 191 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQ 244
>gi|187940918|gb|ACD39740.1| ultraspiracle protein [Spodoptera exigua]
Length = 412
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 287 VGQIFDRVLSELSLKMRALRVDQAEYVALKAIILLNPDVKGLKNRAEVEILREKMFSCLD 346
Query: 56 DY 57
+Y
Sbjct: 347 EY 348
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 359 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ 412
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 378 PDAKGLSNPSEVELL----------RERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRS 427
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 428 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 457
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 257 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 306
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 307 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 360
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 234 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 293
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 294 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 353
Query: 134 LKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 354 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 405
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 311 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 364
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 341 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 400
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 401 TFLMEMLEA 409
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+
Sbjct: 219 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKQKYPE 270
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 129 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 178
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 362 DMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQ 415
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 381 PDAKGLSNSSEVELL----------RERVYASLETYCKHKYPDQQGRFAKLLLRLPALRS 430
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 431 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 460
>gi|31415713|gb|AAP43635.1| steroidogenic factor 1 [Trichosurus vulpecula]
Length = 116
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + ++ E+ ALL+Y + YP
Sbjct: 24 LQVDRQEFVCLKFLILFSLDVKFLENHSLAKDAQEKANAALLEYTMCHYP 73
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLM 179
+P+C DKF +L+ L E+ ++ + EE+LYHKH G P L+
Sbjct: 72 YPHCGDKFRQLLLRLAEVRSLSMQAEEYLYHKHLGGEVPCNNPLI 116
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 314 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ 367
Score = 38.9 bits (89), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 333 PDAKGLSNPSEVELL----------RERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRS 382
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 383 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 412
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD + + VEE E+V +L +YC YP
Sbjct: 395 EMKMDKTELGCLRAIVLFNPDAKNLGTVQKVEELREKVYASLEEYCRKTYP 445
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 309 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 362
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 236 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 293
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 294 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 353
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 354 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 407
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+
Sbjct: 344 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAYCKHKYPE 395
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + + D L G S GV
Sbjct: 271 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--GIKDGILLATGLHVHRNSAHSAGVG 328
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 329 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALREKVYASLEAY 388
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 389 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 442
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 360 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ 413
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 379 PDAKGLSNPSEVELL----------RERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRS 428
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 429 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 458
>gi|195130249|ref|XP_002009565.1| GI15428 [Drosophila mojavensis]
gi|193908015|gb|EDW06882.1| GI15428 [Drosophila mojavensis]
Length = 484
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 376 LNLDRRELSCLKAIILYNPDIRGIKNREDIEHCREKVYACLDEHCRLEHP 425
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP Q
Sbjct: 309 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQ 362
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + ++ D L G
Sbjct: 236 IPHFSELALDDQVILLRAGWNELLIASFSHRSI--SVKDGILLATGLHVHRNSAHSAGVG 293
Query: 105 ----------------QKFDLLSLGLL-----------------GVPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 294 AIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYASLESY 353
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 354 CKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 407
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 168 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ 221
>gi|417347487|gb|AFX60116.1| nuclear receptor USP isoform 1 [Spodoptera frugiperda]
Length = 466
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 341 VGQIFDRVLSELSLKMRALRVDQAEYVALKAIILLNPDVKGLKNRPEVEILREKMFSCLD 400
Query: 56 DY 57
+Y
Sbjct: 401 EY 402
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ + L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 341 DMQMDKTELGCLRAIALFNPDAKGLSNTSEVELLREKVYASLEAYCKQRYPEQQ 394
Score = 36.6 bits (83), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 64/194 (32%)
Query: 53 ALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHN------- 103
AL+++ I + ++ +DDQ+ LL+ W+++L+ H+ + AL D L +
Sbjct: 248 ALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI--ALKDGVLLASELQRDSA 305
Query: 104 -----GQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELKFPNCD----------------- 140
G FD S+ V + DR T++ +K+ +++ +
Sbjct: 306 HSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIALFNPDAKGL 365
Query: 141 ------------------------------KFGKLMSILPELHEIASRGEEHLYHKHCNG 170
+F KL+ LP L I + EHL+ G
Sbjct: 366 SNTSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 425
Query: 171 GAPTQTLLMEMLHA 184
P T LMEML A
Sbjct: 426 DTPIDTFLMEMLEA 439
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 324 DMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQ 377
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 343 PDAKGLSNSSEVELL----------RERVYASLETYCKHKYPDQQGRFAKLLLRLPALRS 392
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 393 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 422
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 308 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYAALE 367
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 368 GYCRVAWP 375
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD + + VEE E+V +L +YC YP
Sbjct: 429 EMKMDKTELGCLRAIVLFNPDAKNLGTVQKVEELREKVYASLEEYCRKTYP 479
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 324 DMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQ 377
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 343 PDAKGLSNSSEVELL----------RERVYASLETYCKHKYPDQQGRFAKLLLRLPALRS 392
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 393 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 422
>gi|195397487|ref|XP_002057360.1| GJ16389 [Drosophila virilis]
gi|194147127|gb|EDW62846.1| GJ16389 [Drosophila virilis]
Length = 499
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI NR +E E+V L ++C +P
Sbjct: 391 LNLDRRELSCLKAIILYNPDIRGIKNRADIELCREKVYACLDEHCRLEHP 440
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 308 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYAALE 367
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 368 GYCRVAWP 375
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 215 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 264
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 308 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYAALE 367
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 368 GYCRVAWP 375
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 314 DMQMDKTELGCLRAIILFNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQ 367
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 333 PDAKGLSNPSEVELL----------RERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRS 382
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 383 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 412
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 308 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYAALE 367
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 368 GYCRVAWP 375
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 297 LQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERMQYP 346
>gi|76155599|gb|AAX26891.2| SJCHGC07682 protein [Schistosoma japonicum]
Length = 149
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ D+ +Y C+K ++L+ PD+ + + V HE V++ L++Y + P I
Sbjct: 59 LQLDVVEYACLKVIVLMQPDLSNLKANSRVRSYHESVRRLLMEYVAKSSPDI 110
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NP+ +G+ + VE E+V AL ++C YP+
Sbjct: 298 EMKMDRTELGCLRAVVLFNPEAKGLRSTAQVEALREKVYAALEEHCRQQYPE 349
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 297 LQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERLQYP 346
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 235 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRTQYP 284
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V L YC YP Q
Sbjct: 349 DMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYACLESYCKQKYPDQQ 402
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 46/168 (27%)
Query: 63 PQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA--------- 94
P++ +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 280 PELPLDDQVILLRAGWNELLIASFSHRSISEKDGILLATGLHVHRNSAHSAGVGAIFERV 339
Query: 95 LPDETTLHNGQKFDLLSLGLL-----------------GVPTLRDRFTQVTHKLSELKFP 137
L + + + D LG L V LR++ + K+P
Sbjct: 340 LTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGDVEVLREKVYACLESYCKQKYP 399
Query: 138 NC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 400 DQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 447
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERMQYP 344
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 433 LHVDSAEYSCLKAIVLFTTDACGLSDVQHIETLQEKSQCALEEYCRTQYP 482
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 47/171 (27%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVL---------------------------------- 84
I +P++QV DQ+ LL+ WS++ VL
Sbjct: 358 IPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFM 417
Query: 85 DHMH---------QRMHNALPDETTLHNGQKFDLLSLGLLGV---PTLRDRFTQVTHKLS 132
DH+ + +H + + L F + GL V TL+++ +
Sbjct: 418 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVQHIETLQEKSQCALEEYC 477
Query: 133 ELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
++PN +FGKL+ LP L ++S+ E L+ G P +TL+ +ML
Sbjct: 478 RTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 528
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 368 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPE 419
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 295 IPHFSDLPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 352
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 353 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 412
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 413 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 466
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 384 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 435
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 53/224 (23%)
Query: 11 ELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVD 68
E EL + CV+ L+P T++ + ++ L+++ I + ++ +D
Sbjct: 262 EAELAVEPKTGACVEASTGLHPSSPND-PVTNICQAADKQLFTLVEWAKRIPHFSELPLD 320
Query: 69 DQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDR-FTQV 127
DQ+ LL+ W+++L+ H+ + A+ D L G S GV + DR T++
Sbjct: 321 DQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTEL 378
Query: 128 THKLSEL----------------------------------------------KFP-NCD 140
K+ ++ K+P
Sbjct: 379 VSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPG 438
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 439 RFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 482
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 296 LQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERMQYP 345
>gi|417347494|gb|AFX60117.1| nuclear receptor USP isoform 2 [Spodoptera frugiperda]
Length = 414
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 289 VGQIFDRVLSELSLKMRALRVDQAEYVALKAIILLNPDVKGLKNRPEVEILREKMFSCLD 348
Query: 56 DY 57
+Y
Sbjct: 349 EY 350
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 262 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKQKYPE 313
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 189 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 246
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 247 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 306
Query: 132 SELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 307 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 360
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 270 DMQMDKTELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQ 323
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R++ + K+P +F KL+ LP L
Sbjct: 289 PDAKGLSNTGEVELL----------REKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRS 338
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 339 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 368
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ +++ NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 345 DMRMDKTELGCLRAIIMFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 398
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 272 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 331
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 332 FDRVLTELVSKMRDMRMDKTELGCLRAIIMFNPDAKGLSNPGEVEILREKVYASLETYCK 391
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 392 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 443
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 293 LQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERMQYP 342
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 424 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 475
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 351 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 408
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 409 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 468
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 469 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 522
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 298 LQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERLQYP 347
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 413 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 464
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 340 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 397
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 398 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 457
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 458 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 511
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 500 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKQKYPE 551
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 427 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 484
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 485 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 544
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 545 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 598
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 286 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYAALE 345
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 346 GYCRVAWP 353
>gi|349803785|gb|AEQ17365.1| putative nuclear receptor subfamily group member 2 [Hymenochirus
curtipes]
Length = 194
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNAL 95
+ +++VDDQMKLLQ+ WS++L+LDH+ +N L
Sbjct: 154 FRELKVDDQMKLLQNCWSELLILDHIDVPCNNLL 187
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 322 DMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQ 375
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 352 VELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPID 411
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 412 TFLMEMLES 420
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 413 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 464
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 340 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 397
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 398 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 457
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 458 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 511
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPDV+ + + H+E E+V +L YC + YP
Sbjct: 233 DMMMDKTELGCLRAIVLFNPDVKNLSDSAHIESLREKVYASLEAYCRSKYP 283
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 410
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 286 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 343
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 344 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 403
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 404 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTGDTPIDTFLMEMLEA 457
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 401
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 277 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 334
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 335 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 394
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 395 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 448
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 376 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 427
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 303 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 360
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 361 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 420
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 421 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 474
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 308 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYGALE 367
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 368 GYCRVAWP 375
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 349 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 400
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 276 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 333
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 334 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 393
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 394 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 447
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 322 DMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQ 375
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 352 VELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPID 411
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 412 TFLMEMLES 420
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 410
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 286 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 343
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 344 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 403
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 404 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 457
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV +
Sbjct: 294 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 351
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 352 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 411
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 412 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D +Y C+K ++L D G+ + T VE E+ Q +L +YC YPQ
Sbjct: 286 LHIDGPEYSCLKAIVLFTTDACGLSDVTQVESLQEKTQSSLEEYCRAQYPQ 336
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 401
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 277 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 334
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 335 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 394
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 395 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 448
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 446 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 497
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV +
Sbjct: 376 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 433
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 434 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 493
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 494 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 544
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 369 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 420
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 296 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 353
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 354 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 413
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 414 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 467
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 410
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 286 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 343
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 344 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 403
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 404 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 457
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 454 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 505
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 381 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 438
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 439 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 498
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 499 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 552
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C+ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 360 DMQMDKTELGCLPAIILFNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQ 413
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 354 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 405
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 281 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 338
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 339 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 398
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 399 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 452
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 328 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 379
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV +
Sbjct: 258 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 315
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 316 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 375
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 376 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 426
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 336 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 387
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 263 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 320
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 321 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 380
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 381 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 434
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 84 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLE 143
Query: 56 DYCITAYPQIQ 66
YC YP Q
Sbjct: 144 TYCKHKYPDQQ 154
>gi|449669174|ref|XP_004206958.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Hydra
magnipapillata]
Length = 473
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 12 LELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+EL D ++Y C+K ++ NPD RG+ + +++ +VQ AL DY
Sbjct: 225 VELNIDDTEYACLKAIVFFNPDARGLSDIKRIKKMRFEVQTALEDY 270
>gi|426225979|ref|XP_004007135.1| PREDICTED: uncharacterized protein LOC101108039 [Ovis aries]
Length = 873
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 485 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 536
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 336 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 387
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 263 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 320
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 321 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 380
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 381 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 434
>gi|410591549|gb|AFV74666.1| estradiol receptor-like protein 4, partial [Portunus
trituberculatus]
Length = 176
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NPD +G+ VE E+V AL
Sbjct: 50 VGGIFDRVLSELVSKMKEMKMDKTELGCLRAIVLFNPDAKGVTCCNDVEILREKVYAALE 109
Query: 56 DYCITAYP 63
+Y T YP
Sbjct: 110 EYTRTTYP 117
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 385 DMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYASLEAYCKQKYPE 436
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 312 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 369
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 370 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYASLEAY 429
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 430 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 483
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPDV+ + + H+E E+V +L YC + YP
Sbjct: 320 DMMMDKTELGCLRAIVLFNPDVKNLSDPAHIESLREKVYASLEAYCRSKYP 370
>gi|308476028|ref|XP_003100231.1| CRE-NHR-14 protein [Caenorhabditis remanei]
gi|308265755|gb|EFP09708.1| CRE-NHR-14 protein [Caenorhabditis remanei]
Length = 433
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILN--RTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N R + E + + KAL Y
Sbjct: 252 RLRTDHAEFSCLKALLLLNPDVVGISNTTRERIREARDALLKALFAY 298
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 67 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 126
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 127 AYCKQKYPE 135
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 11 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 68
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 69 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 128
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 129 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 182
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 382 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 433
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 336 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 387
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 263 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 320
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 321 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 380
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 381 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 434
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP+VRG+ + V E++ AL
Sbjct: 321 VGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEVTLLREKIYGALE 380
Query: 56 DYCITAYP 63
YC A+P
Sbjct: 381 GYCRVAWP 388
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 315 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 366
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 242 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 299
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 300 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 359
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 360 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 413
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 179 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 230
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 106 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 163
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 164 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 223
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 224 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 277
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NPD +G+ VE E+V AL
Sbjct: 286 VGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVLYNPDAKGLTCCNDVEILREKVYAALE 345
Query: 56 DYCITAYPQ 64
+Y T+YP+
Sbjct: 346 EYTRTSYPE 354
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 40.8 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 580 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 637
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 638 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 697
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 698 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 751
Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 653 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 704
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC + YP
Sbjct: 384 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRSQYP 433
>gi|449688240|ref|XP_002168741.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Hydra magnipapillata]
Length = 334
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ D +++ C+K L+L NPD G+ N + +E E+ Q AL DY
Sbjct: 90 NLQTDAAEFSCLKALVLFNPDSPGLGNPSLIENLQEKAQSALEDY 134
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L PD G+ + H+E E+ Q AL +Y + YP
Sbjct: 293 LHVDSAEYSCLKAIVLFTPDACGLSDAAHIESLQEKSQCALEEYVRSQYP 342
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+ +G+ + VE E+V L +YC YP
Sbjct: 149 EMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENLREKVYAILEEYCRQTYP 199
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 40.8 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 605 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 662
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 663 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 722
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 723 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 776
Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 678 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPE 729
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 301 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 352
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 228 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 285
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 286 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 345
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 346 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 399
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 283 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 334
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV +
Sbjct: 213 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 270
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 271 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 330
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 331 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 381
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 271 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 322
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV +
Sbjct: 201 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 258
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 259 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 318
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 319 KYPEQPGRFAKLLLRLPALRSIGLKRLEHLFFFKLIGDTPIDTFLMEMLEA 369
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC + YP
Sbjct: 406 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESLQEKSQCALEEYCRSQYP 455
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+VRG+ + VE E+V AL +Y T +P
Sbjct: 287 EMKMDKTELGCLRSVILFNPEVRGLKSAQEVELLREKVYAALEEYTRTTHP 337
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+ +G+ + VE E+V L +YC YP
Sbjct: 160 EMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENLREKVYAILEEYCRQTYP 210
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T YP
Sbjct: 12 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIEGLQEKSQCALEEYCRTQYP 61
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC + YP
Sbjct: 313 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESIQEKSQCALEEYCRSQYP 362
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDSAEYACLKAIALFTSDACGLTDPAHVESLQEKAQVALTEYVRAQYP 329
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 215 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 266
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 245 VEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 304
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 305 TFLMEMLEA 313
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+VRG+ + VE E+V AL +Y T +P
Sbjct: 309 EMKMDKTELGCLRSVILFNPEVRGLKSAQEVELLREKVYAALEEYTRTTHP 359
>gi|224473826|gb|ACN49167.1| retinoid X receptor beta [Oryzias dancena]
Length = 111
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP Q
Sbjct: 8 DMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLEAYCKHKYPDQQ 61
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHE 154
PD L N + +LL R+R + K+P+ +F KL+ LP L
Sbjct: 27 PDAKGLSNSSEVELL----------RERVYASLEAYCKHKYPDQQGRFAKLLLRLPALRS 76
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 77 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 106
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 262 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 313
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 189 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 246
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 247 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 306
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 307 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 360
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDSAEYACLKAIALFTSDACGLTDPAHVESLQEKAQVALTEYVRAQYP 329
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 411 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 468
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 469 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 528
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 529 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 582
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 484 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 535
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL E+K D ++ C++ ++L NPDV+G+ +E E+V L
Sbjct: 318 VGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACETIEVLREKVYATLE 377
Query: 56 DYCITAYP 63
+Y T+YP
Sbjct: 378 EYTRTSYP 385
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL E+K D ++ C++ ++L NPDV+G+ +E E+V L
Sbjct: 313 VGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACETIEVLREKVYATLE 372
Query: 56 DYCITAYP 63
+Y T+YP
Sbjct: 373 EYTRTSYP 380
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 141 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 192
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 68 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 125
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 126 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 185
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 186 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 239
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 17 DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
D ++Y C+K ++L PD+RG+ +HVE+ +Q Q L +Y + YP
Sbjct: 269 DQTEYACLKAIVLFKPDIRGLRLWSHVEQLQDQAQCMLGEYELQHYP 315
>gi|432889046|ref|XP_004075118.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oryzias latipes]
Length = 453
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 135 KFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ PN + L+ L EL ++ EE+LY +H G P +LL EMLHAK
Sbjct: 401 QLPN--RLAHLLEFLSELRPLSCLAEEYLYCRHLRGEVPCNSLLDEMLHAK 449
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLD 85
+ Q+Q+ DQMKLL H WS++L LD
Sbjct: 276 FKQLQISDQMKLLHHCWSELLALD 299
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
LK D + +K+L+L NP + + + +E+ QV ALL+Y TA PQ+
Sbjct: 351 LKVDHQELASIKYLILFNPAAKELEDPGFIEKVKLQVGGALLEYTRTACPQL 402
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE E+V AL +Y T YP
Sbjct: 290 EMKMDKTELGCLRAIVLFNPDAKGVNCCSDVEILREKVYAALEEYTRTTYP 340
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 139 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 190
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 66 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 123
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 124 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 183
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 184 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 237
>gi|308475174|ref|XP_003099806.1| CRE-NHR-25 protein [Caenorhabditis remanei]
gi|308266278|gb|EFP10231.1| CRE-NHR-25 protein [Caenorhabditis remanei]
Length = 568
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + + L + + NG++ + + LLG
Sbjct: 370 FSKLNLDDQMNLLQTSWATVHIIDITNAMVLGTLHQQYKVGNGEEVSVGFIALLGNQNFV 429
Query: 122 DRFTQVTHKLSELKFPNCD 140
+ ++ L + F N D
Sbjct: 430 SSWNEIVMSLRNMGFNNFD 448
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC + YP
Sbjct: 313 LHVDSAEYSCLKAIVLFTTDACGLSDVAHIESIQEKSQCALEEYCRSQYP 362
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 139 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 190
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 66 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 123
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 124 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 183
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 184 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 237
>gi|341890851|gb|EGT46786.1| CBN-NHR-25 protein [Caenorhabditis brenneri]
Length = 542
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%)
Query: 65 IQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRF 124
+ +DDQM LLQ W+ + ++D + + LP + NG+ + + LLG T + +
Sbjct: 349 VLMDDQMNLLQTCWATVHIVDLTYAMVLGNLPPTYKIANGEDVSVGFVALLGNQTYVNTW 408
Query: 125 TQVTHKLSELKF 136
++T++L + F
Sbjct: 409 AELTNQLRNMGF 420
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 355 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 405
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 282 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 339
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 340 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 399
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 400 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 394 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 444
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 321 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 378
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 379 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 438
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 439 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 492
>gi|17136580|ref|NP_476781.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|442614874|ref|NP_001259168.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|137178|sp|P20153.1|USP_DROME RecName: Full=Protein ultraspiracle; AltName: Full=Chorion factor
1; AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=XR2C
gi|103505|pir||S11513 usp protein - fruit fly (Drosophila sp.)
gi|8833|emb|CAA37496.1| unnamed protein product [Drosophila melanogaster]
gi|3676116|emb|CAA21122.1| EG:22E5.1 [Drosophila melanogaster]
gi|7290245|gb|AAF45707.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|17862122|gb|AAL39538.1| LD09973p [Drosophila melanogaster]
gi|220943484|gb|ACL84285.1| usp-PA [synthetic construct]
gi|220952764|gb|ACL88925.1| usp-PA [synthetic construct]
gi|440216351|gb|AGB95014.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|227126|prf||1614351A retinoid X receptor
Length = 508
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 400 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 449
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 137 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 188
Score = 38.9 bits (89), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 64 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 121
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 122 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 181
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 182 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 262 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVYASLEAYCKHKYPE 313
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 189 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 246
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V TLR++
Sbjct: 247 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVYASLEAY 306
Query: 132 SELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 307 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 360
>gi|8096|emb|CAA36827.1| unnamed protein product [Drosophila melanogaster]
Length = 507
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 399 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 448
>gi|914856|emb|CAA61755.1| estrogen receptor related receptor cDNA-2 [Mus musculus]
gi|1703648|gb|AAB37687.1| mERR-2 [Mus sp.]
Length = 433
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 53/176 (30%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF--DLLSLGLLG 116
I +P + + DQM LLQ +W ++L+L +++ +LP + L + + D L+G
Sbjct: 261 IPGFPSLTLGDQMSLLQSAWMEILILGIVYR----SLPYDDKLAYAEDYIMDEEHSRLVG 316
Query: 117 VPTLRDRFTQVTHKLSELK-------------FPNCD----------------------- 140
+ L Q+ + +LK N D
Sbjct: 317 LLDLYRAILQLVRRYKKLKVEKEEFMILKALALANSDSMYIENLEAVQKLQDLLHEALQD 376
Query: 141 -----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GKL+ LP L + A++ +H Y G P L +EML AK
Sbjct: 377 YELSQRHEEPRRAGKLLWTLPLLRQTAAKAVQHFYSVKLQGKVPMHKLFLEMLEAK 432
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 414
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I+ + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 137 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 188
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 64 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 121
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 122 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 181
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 182 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 194 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPE 245
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 121 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 178
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 179 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 238
Query: 132 SELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 239 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 292
>gi|195347797|ref|XP_002040438.1| GM18927 [Drosophila sechellia]
gi|194121866|gb|EDW43909.1| GM18927 [Drosophila sechellia]
Length = 505
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 397 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 446
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 136 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 187
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 63 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 120
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 121 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 180
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 181 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 234
>gi|70799020|gb|AAZ09200.1| retinoid X receptor alpha protein [Bos taurus]
Length = 152
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 49 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLGAYCKHKYPE 100
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 135 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 186
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 62 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 119
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 120 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 179
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 180 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 40.4 bits (93), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL E+K D ++ C++ ++L NPDV+G+ +E E+V L
Sbjct: 318 VGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACDTIEVLREKVYATLE 377
Query: 56 DYCITAYP 63
+Y T+YP
Sbjct: 378 EYTRTSYP 385
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 135 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 186
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 62 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 119
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 120 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 179
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 180 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 355 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPE 406
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 282 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 339
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 340 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 399
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 400 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 154 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPE 205
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 348 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 398
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 275 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 332
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 333 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 392
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 393 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 446
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 327 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPE 378
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 254 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 311
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 312 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 371
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 372 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 425
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 386 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 436
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 313 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 370
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 371 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 430
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 431 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 484
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 133 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 184
Score = 38.9 bits (89), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 60 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 117
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 118 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 177
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 178 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 231
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 513 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 564
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 543 VEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 602
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 603 TFLMEMLEA 611
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 135 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 186
Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 62 IPHFSELPLDDQVILLRAGWNELLIASASHRSI--AVKDGILLATGLHVHRNSAHSAGVG 119
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 120 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 179
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 180 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP
Sbjct: 288 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYP 338
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + + +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 215 IPHFSDLPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHTAGVG 272
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR+R
Sbjct: 273 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAY 332
Query: 132 SELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 333 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 386
>gi|409178673|gb|AFV25502.1| ultraspiracle, partial [Drosophila simulans]
Length = 468
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 369 RLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 419
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 82 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 141
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 142 AYCKHKYPE 150
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 129 VEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 188
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 189 TFLMEMLEA 197
>gi|409178675|gb|AFV25503.1| ultraspiracle, partial [Drosophila mauritiana]
Length = 474
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 375 RLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 425
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP
Sbjct: 374 DMNMDKAELGCLRAIVLFNPDAKGLSSPSGVEAFREKVYASLESYCKQKYP 424
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 116 GVPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPT 174
GV R++ + K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 403 GVEAFREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 462
Query: 175 QTLLMEMLHAKRK 187
T LMEML A K
Sbjct: 463 DTFLMEMLEAPPK 475
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 843 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 892
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 330 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 380
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 257 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 314
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 315 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 374
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 375 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 428
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 178 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYPE 229
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 105 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AIKDGILLATGLHVHRNSAHSAGVG 162
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 163 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 222
Query: 132 SELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ K+P +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 223 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDTPIDTFLMEML 274
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ D +++ C+K L+L NPD G+ N + +E E+ Q AL DY
Sbjct: 209 NLQTDAAEFSCLKALVLFNPDSPGLGNPSLIENLQEKAQSALEDY 253
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + VE E+V +L YC YP+ Q
Sbjct: 301 DMQMDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQ 354
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 133 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 184
Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 60 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 117
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 118 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 177
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 178 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 231
>gi|6016234|sp|P79926.1|HNF4B_XENLA RecName: Full=Hepatocyte nuclear factor 4-beta; Short=HNF-4-beta;
AltName: Full=Nuclear receptor subfamily 2 group A
member 3
gi|1771970|emb|CAA89991.1| hepatocyte nuclear factor 4 beta (HNF4 beta) [Xenopus laevis]
Length = 446
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
E++ D ++Y+C+K ++ +PD +G+ ++T V+ QVQ L DY ++D+
Sbjct: 267 EIQIDDNEYVCLKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDY---------INDRQF 317
Query: 73 LLQHSWSDMLVL 84
+ +SD+L+L
Sbjct: 318 DSRGRFSDILLL 329
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
E+K D ++ C++ ++L NPD + + + VEE E+V +L +YC Y
Sbjct: 379 EMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEELREKVYASLEEYCRNQY 428
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 365 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 415
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 292 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 349
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 350 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 409
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 410 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 463
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
E+K D ++ C++ ++L NPD + + + VEE E+V +L +YC Y
Sbjct: 377 EMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEELREKVYASLEEYCRNQY 426
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP
Sbjct: 276 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYP 326
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + + +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 203 IPHFSDLPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHTAGVG 260
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR+R
Sbjct: 261 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAY 320
Query: 132 SELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 321 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 374
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 131 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 182
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 58 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 115
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 116 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 175
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 176 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 229
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 115 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 174
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 175 AYCKHKYPE 183
>gi|148228957|ref|NP_001081539.1| hepatocyte nuclear factor 4-beta [Xenopus laevis]
gi|125859019|gb|AAI29598.1| LOC397902 protein [Xenopus laevis]
Length = 455
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY--------------C 58
E++ D ++Y+C+K ++ +PD +G+ ++T V+ QVQ L DY
Sbjct: 276 EIQIDDNEYVCLKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDYINDRQFDSRGRFSDI 335
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD----LLSLGL 114
+ P +Q + Q ++ + + + + L TT+ GQ + L+L L
Sbjct: 336 LLLLPPLQSITWQMIEQVQFAKLFGVARIDSLLQEMLLGGTTMDGGQYINSGHSSLNLDL 395
Query: 115 LGVPTLRD-RFTQVTHKLSELK 135
L PT+ V H +S L
Sbjct: 396 LSGPTVHSHNLHSVIHTVSSLS 417
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 40.4 bits (93), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 132 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 183
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 59 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 116
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 117 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 176
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 177 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 230
>gi|309320759|gb|ADO64596.1| ultraspiracle [Spodoptera littoralis]
Length = 467
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 342 VGQIFDRVLSELSLKMRALRVDHAEYVALKAIILLNPDVKGLNNRLEVEILREKMFSCLD 401
Query: 56 DY 57
+Y
Sbjct: 402 EY 403
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D + C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 331 DMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQ 384
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 23/152 (15%)
Query: 34 VRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHN 93
V I +R V+ A+ D +T D QM ++ +VL +
Sbjct: 300 VGAIFDRESVQSAE---VGAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFN------- 349
Query: 94 ALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPEL 152
PD L N + +LL R++ + K+P +F KL+ LP L
Sbjct: 350 --PDAKGLSNTGEVELL----------REKVYASLEAYCKQKYPEQQGRFAKLLLRLPAL 397
Query: 153 HEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 398 RSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 429
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 327 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLESYCKQRYPDQQ 380
Score = 36.2 bits (82), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 60/183 (32%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH-----------------------NALPDE 98
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D
Sbjct: 243 FSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDR 302
Query: 99 TTLHNGQ-------------------KFDLLSLGLLG-----------------VPTLRD 122
+ HN + + D LG L V LR+
Sbjct: 303 ESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLRE 362
Query: 123 RFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
+ + ++P+ +F KL+ LP L I + EHL+ G P T LMEM
Sbjct: 363 KVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 422
Query: 182 LHA 184
L A
Sbjct: 423 LEA 425
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + VE E+V +L YC YP+ Q
Sbjct: 267 DMQMDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQ 320
Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++P +F KL+ LP L I + EHL+ G P
Sbjct: 297 VELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 356
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 357 TFLMEMLEA 365
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + VE E+V +L YC YP+ Q
Sbjct: 267 DMQMDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQ 320
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++P +F KL+ LP L I + EHL+ G P
Sbjct: 297 VELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 356
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 357 TFLMEMLEA 365
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRSSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D + C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 323 DMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQ 376
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 23/152 (15%)
Query: 34 VRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHN 93
V I +R V+ A+ D +T D QM ++ +VL +
Sbjct: 292 VGAIFDRESVQSAE---VGAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFN------- 341
Query: 94 ALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPEL 152
PD L N + +LL R++ + K+P +F KL+ LP L
Sbjct: 342 --PDAKGLSNTGEVELL----------REKVYASLEAYCKQKYPEQQGRFAKLLLRLPAL 389
Query: 153 HEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 390 RSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 421
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y+C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYVCLKAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 313
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 40.0 bits (92), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D + C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 309 DMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQ 362
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 46/178 (25%)
Query: 53 ALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVL---------------------DHMHQ 89
AL+++ I + ++ +DDQ+ LL+ W+++L+ D H
Sbjct: 230 ALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGVLLASELQRDSAHS 289
Query: 90 RMHNALPDE--TTLHNGQK---FDLLSLGLLG-----------------VPTLRDRFTQV 127
A+ D T L N + D + LG L V LR++
Sbjct: 290 AGVGAIFDRVLTELVNKMRDMQMDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYAS 349
Query: 128 THKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 350 LEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 407
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 129 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 188
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 189 AYTKQKYPE 197
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 176 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 235
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 236 TFLMEMLE 243
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 121 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 180
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 181 AYTKQKYPE 189
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 168 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 227
Query: 176 TLLMEML 182
T LMEML
Sbjct: 228 TFLMEML 234
>gi|13399655|pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
gi|13399656|pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
gi|13399657|pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
gi|13399658|pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
gi|13399659|pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
gi|13399660|pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 171 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 220
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 336 DMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 387
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 263 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 320
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 321 AIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 380
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 381 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 434
>gi|195564694|ref|XP_002105949.1| GD16395 [Drosophila simulans]
gi|194203314|gb|EDX16890.1| GD16395 [Drosophila simulans]
Length = 217
Score = 40.0 bits (92), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 108 RLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 158
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 325 DMQMDKTELGCLRAIILFNPDAKGLSSSSEVELLREKVYASLESYCKHRYPDQQ 378
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 157 LHVDSAEYSCLKAIVLFTPDAVGLTDLCHVENVQEKSQCALEEYVRNQYP 206
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+ Q MK
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE-QPGRPMK 418
Query: 73 LLQ 75
Q
Sbjct: 419 AQQ 421
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 82 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLE 141
Query: 56 DYCITAYP 63
YC YP
Sbjct: 142 AYCKHKYP 149
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR+R + K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 129 VEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 188
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 189 TFLMEMLEA 197
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V +L +Y T YP
Sbjct: 347 EMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYP 397
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + S+ ++P+ +F KL+ LP L I + EHL+ G P
Sbjct: 377 VEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 436
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 437 TFLMEMLES 445
>gi|297241703|gb|ADI24671.1| retinoid X receptor, partial [Notophthalmus viridescens]
Length = 267
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G N VE E+V +L YC YP+ Q
Sbjct: 214 DMRMDKTELGCLRAIILFNPDAKGPSNPGEVELLREKVYASLESYCKHKYPEQQ 267
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 262 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPE 313
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 189 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 246
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 247 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 306
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 307 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 360
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V +L +Y T YP
Sbjct: 363 EMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYP 413
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + S+ ++P+ +F KL+ LP L I + EHL+ G P
Sbjct: 393 VEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 452
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 453 TFLMEMLES 461
>gi|344252996|gb|EGW09100.1| Retinoic acid receptor RXR-beta [Cricetulus griseus]
Length = 101
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 17 DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 2 DKTELGCLRAIILFNPDAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQ 51
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 28 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 87
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 88 TFLMEMLEA 96
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 384 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQ 437
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 60/186 (32%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH-----------------------NAL 95
I + ++ +DDQ+ LL+ W+++L+ H+ + A+
Sbjct: 297 IPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAI 356
Query: 96 PDETTLHNGQ-------------------KFDLLSLGLLG-----------------VPT 119
D + HN + + D LG L V
Sbjct: 357 FDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVEL 416
Query: 120 LRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
LR++ + ++P+ +F KL+ LP L I + EHL+ G P T L
Sbjct: 417 LREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 476
Query: 179 MEMLHA 184
MEML A
Sbjct: 477 MEMLEA 482
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V +L +Y T YP
Sbjct: 343 EMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYP 393
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Query: 83 VLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG------VPTLRDRFTQVTHKLSELKF 136
VL + RM D+T L + L + G V LR++ + S+ ++
Sbjct: 333 VLTELVARMREMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRY 392
Query: 137 PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
P+ +F KL+ LP L I + EHL+ G P T LMEML +
Sbjct: 393 PDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLES 441
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 40.0 bits (92), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +Y C+K + L +PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSVEYSCLKAIALFSPDACGLSDPAHVESLQEKAQVALTEYERMQYP 344
>gi|146332495|gb|ABQ22753.1| retinoic acid receptor RXR-gamma-like protein [Callithrix jacchus]
Length = 126
Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 53 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 112
Query: 176 TLLMEMLHA 184
T LMEML
Sbjct: 113 TFLMEMLET 121
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 6 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 65
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 66 AYTKQKYPE 74
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 368 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQ 421
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 60/186 (32%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH-----------------------NAL 95
I + ++ +DDQ+ LL+ W+++L+ H+ + A+
Sbjct: 281 IPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAI 340
Query: 96 PDETTLHNGQ-------------------KFDLLSLGLLG-----------------VPT 119
D + HN + + D LG L V
Sbjct: 341 FDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVEL 400
Query: 120 LRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
LR++ + ++P+ +F KL+ LP L I + EHL+ G P T L
Sbjct: 401 LREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 460
Query: 179 MEMLHA 184
MEML A
Sbjct: 461 MEMLEA 466
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V +L +Y T YP
Sbjct: 367 EMKMDKTELGCLRAIVLFNPDAKGLSAIQEVEALREKVYASLEEYSKTRYP 417
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + S+ ++P+ +F KL+ LP L I + EHL+ G P
Sbjct: 397 VEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 456
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 457 TFLMEMLES 465
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 19 SDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
S+Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 219 SEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 263
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 335 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQ 388
Score = 36.2 bits (82), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 60/186 (32%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH-----------------------NAL 95
I + ++ +DDQ+ LL+ W+++L+ H+ + A+
Sbjct: 248 IPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAI 307
Query: 96 PDETTLHNGQ-------------------KFDLLSLGLLG-----------------VPT 119
D + HN + + D LG L V
Sbjct: 308 FDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVEL 367
Query: 120 LRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
LR++ + ++P+ +F KL+ LP L I + EHL+ G P T L
Sbjct: 368 LREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 427
Query: 179 MEMLHA 184
MEML A
Sbjct: 428 MEMLEA 433
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y +P
Sbjct: 209 LQVDSAEYSCLKAIALFTPDACGLSDPAHVETLQEKAQVALTEYERAQFP 258
>gi|290760683|gb|ADD59926.1| retinoid X receptor alpha, partial [Orcinus orca]
Length = 130
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 38 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVETLREKVYASLEAYCKHKYPE 89
>gi|301607256|ref|XP_002933229.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 420
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + T ++ QVQ +L DY
Sbjct: 233 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDY 277
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + T ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDY 312
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 39.7 bits (91), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 228 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQKYP 278
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 155 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AIKDGILLATGLHVHRNSAHSAGVG 212
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR++
Sbjct: 213 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 272
Query: 132 SELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 273 CKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 326
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + T ++ QVQ +L DY
Sbjct: 277 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDY 321
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP+
Sbjct: 349 DMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPE 400
Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 379 VEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 438
Query: 176 TLLMEML 182
T LMEML
Sbjct: 439 TFLMEML 445
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + T ++ QVQ +L DY
Sbjct: 277 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDY 321
>gi|4102801|gb|AAD01591.1| retinoid X receptor gamma [Rattus norvegicus]
Length = 107
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 4 DMRMDKSELGCLRAIVLFNPDAKGLSNPSEVESLREKVYATLEPYTKQKYPE 55
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V +LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 34 VESLREKVYATLEPYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 93
Query: 176 TLLMEMLHA 184
T LMEML
Sbjct: 94 TFLMEMLET 102
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP+
Sbjct: 365 DMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYPE 416
Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 395 VEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 454
Query: 176 TLLMEML 182
T LMEML
Sbjct: 455 TFLMEML 461
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V AL +Y T YP
Sbjct: 356 EMKIDKTELGCLRSIVLFNPDAKGLNCVNDVEILREKVYAALEEYTRTTYP 406
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL ++ D ++ C++ ++L NPD +G+ + + VE E+V +L
Sbjct: 134 VGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPSDVEALQEKVYASLE 193
Query: 56 DYCITAYP 63
YC YP
Sbjct: 194 SYCKQKYP 201
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 348 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 399
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 378 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 437
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 438 TFLMEMLE 445
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 386 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYATLEAYTKQKYPE 437
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 416 VEALREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 475
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 476 TFLMEMLE 483
>gi|12239372|gb|AAG49449.1|AF158103_1 FTZ-F1 [Schistosoma mansoni]
gi|19421733|gb|AAL86621.1| FTZ-F1 nuclear receptor-like protein [Schistosoma mansoni]
Length = 731
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 54/180 (30%)
Query: 52 KALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS 111
+AL D+ + + DDQ+ L+Q+ W+D+L LD + + P E L + + +L +
Sbjct: 457 RALPDFSL-----LDTDDQILLIQNCWADLLCLDCCWRSL--PTPSEIRLTSSKCINLEA 509
Query: 112 LGLLGVPTLRDRFTQVTHKLSELKF----------------------------------- 136
+G + +R Q+T L+ L+
Sbjct: 510 AREMGAEEIVERILQLTQSLTRLQLDIVEYACLKVIVLMQADLNNLKASSQVRSYQESVR 569
Query: 137 -----------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
P+ DKF KL++ +PEL + + L + T +LLME+L +
Sbjct: 570 RLLMDYVTKSSPDINDKFNKLINRIPELRKTSQAARLMLVDLDLSSYLSTNSLLMELLRS 629
Score = 39.3 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ DI +Y C+K ++L+ D+ + + V E V++ L+DY + P I
Sbjct: 532 LQLDIVEYACLKVIVLMQADLNNLKASSQVRSYQESVRRLLMDYVTKSSPDI 583
>gi|256083730|ref|XP_002578092.1| FTZ-F1 nuclear receptor-like protein [Schistosoma mansoni]
Length = 892
Score = 39.7 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 54/180 (30%)
Query: 52 KALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS 111
+AL D+ + + DDQ+ L+Q+ W+D+L LD + + P E L + + +L +
Sbjct: 690 RALPDFSL-----LDTDDQILLIQNCWADLLCLDCCWRSL--PTPSEIRLTSSKCINLEA 742
Query: 112 LGLLGVPTLRDRFTQVTHKLSELKF----------------------------------- 136
+G + +R Q+T L+ L+
Sbjct: 743 AREMGAEEIVERILQLTQSLTRLQLDIVEYACLKVIVLMQADLNNLKASSQVRSYQESVR 802
Query: 137 -----------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
P+ DKF KL++ +PEL + + L + T +LLME+L +
Sbjct: 803 RLLMDYVTKSSPDINDKFNKLINRIPELRKTSQAARLMLVDLDLSSYLSTNSLLMELLRS 862
Score = 39.3 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ DI +Y C+K ++L+ D+ + + V E V++ L+DY + P I
Sbjct: 765 LQLDIVEYACLKVIVLMQADLNNLKASSQVRSYQESVRRLLMDYVTKSSPDI 816
>gi|268581075|ref|XP_002645520.1| C. briggsae CBR-NHR-14 protein [Caenorhabditis briggsae]
Length = 440
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTH--VEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI + T + + +Q+ KAL Y
Sbjct: 252 RLRTDHAEFSCLKALLLLNPDVVGISSSTRDKIRDARDQLLKALFAY 298
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
E+K D ++ C++ ++L NPD + + + VEE E+V +L +YC Y
Sbjct: 218 EMKMDKTELGCLRAIVLFNPDAKNLTSVQKVEELREKVYASLEEYCRNQY 267
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
E+K D+++ C++ ++L NPD +G+ + + VE E+V L +Y T Y
Sbjct: 298 EMKLDLAELGCLRAIILFNPDPKGLKSVSQVEALREKVYATLEEYTRTNY 347
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 450 TFLMEMLEA 458
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 344 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 395
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 374 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 433
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 434 TFLMEMLE 441
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLGAYTKQKYPE 411
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 344 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 395
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 374 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 433
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 434 TFLMEMLE 441
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|28628010|gb|AAO18153.1| USP-RXR [Leptopilina heterotoma]
Length = 283
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+VRG+ + VE E+V AL +Y T P
Sbjct: 197 EMKMDKTELGCLRTIILFNPEVRGLKSAQEVELLREKVYAALEEYTRTTKP 247
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL ++K D ++ C++ ++L NPD +G+ VE+ E+V +L
Sbjct: 110 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLE 169
Query: 56 DYCITAYPQ 64
+Y + YP+
Sbjct: 170 EYTKSRYPE 178
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 36.6 bits (83), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
+ LMEML
Sbjct: 450 SFLMEML 456
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
+ LMEML
Sbjct: 450 SFLMEML 456
>gi|4139084|gb|AAD03687.1| nuclear receptor NHR-14 [Caenorhabditis elegans]
Length = 288
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRT--HVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N T + E + + K L Y
Sbjct: 106 LRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 151
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRLRSQVQVSLEDY 322
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++K D ++ C++ ++L NPD +G+ VE+ E+V +L +Y + YP+
Sbjct: 333 DMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPE 384
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|226442013|gb|ACO57596.1| retinoid X receptor alpha, partial [Gillichthys seta]
Length = 221
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 141 VGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLE 200
Query: 56 DYCITAYP 63
Y YP
Sbjct: 201 SYTKQKYP 208
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 39.3 bits (90), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPDV+ + H+E E+V +L YC + YP
Sbjct: 154 DMMMDKTELGCLRAVVLFNPDVKNPSDSAHIESLREKVYASLEAYCRSKYP 204
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ N HVE E+ Q AL +Y + YP
Sbjct: 308 LHVDSAEYSCLKAIVLFTTDACGLSNVAHVESLQEKSQCALEEYVRSQYP 357
>gi|226442011|gb|ACO57595.1| retinoid X receptor alpha, partial [Gillichthys mirabilis]
Length = 221
Score = 39.3 bits (90), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 141 VGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLE 200
Query: 56 DYCITAYP 63
Y YP
Sbjct: 201 SYTKQKYP 208
>gi|156380981|ref|XP_001632045.1| predicted protein [Nematostella vectensis]
gi|156219095|gb|EDO39982.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L D++++ C+ L+LL+PD G++++ V E V L DY + YP + + KL
Sbjct: 261 LNMDVNEFSCLSGLVLLSPDAPGVVDKDKVTELQTNVTSCLRDYEMYRYPS-KSNRLGKL 319
Query: 74 LQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL 112
L L L + AL + TL K D+ L
Sbjct: 320 L-------LCLPSLRAYSEKALENYVTLEFFGKLDMPPL 351
>gi|25513780|pir||H89591 protein T01B10.4 [imported] - Caenorhabditis elegans
Length = 445
Score = 39.3 bits (90), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILN--RTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N R + E + + K L Y
Sbjct: 267 RLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 313
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ N HVE E+ Q AL +Y + YP
Sbjct: 314 LHVDSAEYSCLKAIVLFTTDACGLSNVAHVESLQEKSQCALEEYVRSQYP 363
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
E++ D ++Y C+K ++ +PD +G+ ++T V+ QVQ L DY ++D+
Sbjct: 276 EIQIDDNEYACLKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDY---------INDRQY 326
Query: 73 LLQHSWSDMLVL 84
+ +SD+L+L
Sbjct: 327 DSRGRFSDILLL 338
>gi|432095516|gb|ELK26668.1| Usher syndrome type-1C protein-binding protein 1 [Myotis davidii]
Length = 768
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 665 EYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 708
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 39.3 bits (90), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V AL +Y T YP
Sbjct: 323 EMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYP 373
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 39.3 bits (90), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 328 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEXYTKQKYPE 379
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 358 VETLREKVYATLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 417
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 418 TFLMEMLE 425
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRLRSQVQVSLEDY 322
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V AL +Y T YP
Sbjct: 322 EMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYP 372
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NP+VRG+ + VE E+V +L +Y + +P+
Sbjct: 297 EMKMDKAELGCLRTIILYNPEVRGLRSVGEVEALREKVYASLEEYTRSTHPE 348
Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ + + ++ L +G + GV
Sbjct: 224 IPHFTSLPIEDQVLLLRAGWNELLIAGFSHRSI--GVKEKIVLGSGVTVCRNTAHQAGVD 281
Query: 119 TLRDR-FTQVTHKLSELKFPNCDKFGKLMSIL---PELHEIASRGE 160
T+ DR T++ K+ E+K + G L +I+ PE+ + S GE
Sbjct: 282 TIFDRALTELVSKMREMKMDKAE-LGCLRTIILYNPEVRGLRSVGE 326
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ VE E+V AL +Y T YP
Sbjct: 327 EMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYP 377
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 329
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 278 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 327
>gi|363809055|dbj|BAL41655.1| ultraspiracle protein [Scirpophaga incertulas]
Length = 408
Score = 39.3 bits (90), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPD++G+ NR V E++ L
Sbjct: 284 VGQIFDRVLSELSLKMRHLRMDQAEYVALKAIILLNPDIKGLGNRQEVL--REKMYSCLD 341
Query: 56 DYC 58
+YC
Sbjct: 342 EYC 344
>gi|71995375|ref|NP_741861.2| Protein NHR-14, isoform b [Caenorhabditis elegans]
gi|351061750|emb|CCD69598.1| Protein NHR-14, isoform b [Caenorhabditis elegans]
Length = 434
Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILN--RTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N R + E + + K L Y
Sbjct: 252 RLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 298
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 322 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 373
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 352 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 411
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 412 TFLMEMLE 419
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 329
>gi|71995367|ref|NP_741860.2| Protein NHR-14, isoform a [Caenorhabditis elegans]
gi|44888978|sp|O02151.3|NHR14_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-14
gi|351061749|emb|CCD69597.1| Protein NHR-14, isoform a [Caenorhabditis elegans]
Length = 435
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILN--RTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N R + E + + K L Y
Sbjct: 252 RLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 298
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 329
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 311 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 362
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 341 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 400
Query: 176 TLLMEML 182
T LMEML
Sbjct: 401 TFLMEML 407
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 220 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 279
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 280 AYTKQKYPE 288
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 267 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 326
Query: 176 TLLMEMLHA 184
T LMEML
Sbjct: 327 TFLMEMLET 335
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 220 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 279
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 280 AYTKQKYPE 288
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 267 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 326
Query: 176 TLLMEMLHA 184
+ LMEML
Sbjct: 327 SFLMEMLET 335
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 220 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 279
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 280 AYTKQKYPE 288
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 267 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 326
Query: 176 TLLMEMLHA 184
T LMEML
Sbjct: 327 TFLMEMLET 335
>gi|341869840|gb|AEK99013.1| FLAGNvUSPDE [synthetic construct]
Length = 264
Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NP+VRG+ + VE E+V +L +Y + +P+
Sbjct: 159 EMKMDKAELGCLRTIILYNPEVRGLRSVGEVEALREKVYASLEEYTRSTHPE 210
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 329
>gi|74273324|gb|ABA01330.1| FF1c [Oryzias latipes]
Length = 120
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ D +++C+K+L+L NP V+ NR VE E+V +AL+++
Sbjct: 65 LQLDKQEFVCLKYLVLFNPSVQ---NRKQVELTQEKVNRALMEH 105
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D ++ C++ ++L NPD +G+ + VE E+V +L
Sbjct: 215 VGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSSPGEVEALREKVYASLE 274
Query: 56 DYCITAYP 63
YC YP
Sbjct: 275 AYCKQKYP 282
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP
Sbjct: 367 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYATLEAYTKQKYP 417
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 397 VEALREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 456
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 457 TFLMEMLE 464
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 38.9 bits (89), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 116 GVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPT 174
GV TL+D+ K K+P +FGKL+ +LP+L I E L+ + G P
Sbjct: 236 GVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIGNIPI 295
Query: 175 QTLLMEMLHA 184
+ LL +M A
Sbjct: 296 ERLLCDMYKA 305
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 38.9 bits (89), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + THVE E+ Q AL +Y + YP
Sbjct: 230 LHVDSAEYSCLKAIVLFTSDACGLSDVTHVESLQEKSQCALEEYVRSQYP 279
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 364 DMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 414
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 38.9 bits (89), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP
Sbjct: 368 DMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYP 418
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 398 VEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 457
Query: 176 TLLMEML 182
T LMEML
Sbjct: 458 TFLMEML 464
>gi|449672836|ref|XP_002165675.2| PREDICTED: retinoic acid receptor RXR-like [Hydra magnipapillata]
Length = 502
Score = 38.9 bits (89), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L+ D++++ C++ ++L NPD + VEE E+ L+DYC +P
Sbjct: 403 DLQVDMTEWGCLRAVILFNPDTNSLGAVNQVEEIRERYLLTLIDYCKLIFPN 454
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP
Sbjct: 336 DMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYP 386
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 263 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 320
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 321 AIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 380
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 381 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 434
>gi|24210302|emb|CAD54660.1| retinoid x receptor, beta [Danio rerio]
Length = 129
Score = 38.9 bits (89), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 26 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQ 79
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++P+ +F KL+ LP L I + EHL+ G P
Sbjct: 56 VELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 115
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 116 TFLMEMLEA 124
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALP-DETTL-------HNGQKFDLL 110
+ A+ + + DQ+ LL+ +W ++ VL A+P D TL H+G +L
Sbjct: 205 VPAFSTLSLPDQLMLLEDAWRELFVLGIAQW----AIPVDANTLLAVSVPTHSGS--ELR 258
Query: 111 SLG-LLGVPTLRDRFTQVTHKLSELKFPN--CDKFGKLMSILPELHEIASRGEEHLYHKH 167
S G + L+D + ++P C +FGKL+ +LP L I E ++ K
Sbjct: 259 SFGNAAAIAALQDEAQLTLNSYIHTRYPTQPC-RFGKLLLLLPALRSIGPSTIEEVFFKK 317
Query: 168 CNGGAPTQTLLMEM 181
G P LL +M
Sbjct: 318 TIGNVPITRLLSDM 331
>gi|357621270|gb|EHJ73160.1| ultraspiracle-like protein [Danaus plexippus]
Length = 423
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQV 50
+G + R EL LK D ++Y+ +K ++LLNPD++G+ NR V+ E+V
Sbjct: 369 VGQIFDRVLSELSLKMRALRMDQAEYVALKAIVLLNPDIKGLKNRQDVDVLREKV 423
>gi|374997755|ref|YP_004973254.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
orientis DSM 765]
gi|357216121|gb|AET70739.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
orientis DSM 765]
Length = 163
Score = 38.9 bits (89), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 63 PQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRD 122
P Q+DD + L + +++++ H Q++ LPD+ H QK D+ S + GV +
Sbjct: 11 PYKQLDDYIDSLPYKKENLILILHYAQKLFGYLPDKVQWHIAQKLDIPSAKVYGVVSFYS 70
Query: 123 RFT 125
FT
Sbjct: 71 FFT 73
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 38.9 bits (89), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYP 410
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 38.9 bits (89), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE E+V AL + T YP
Sbjct: 293 EMKMDKTELGCLRAIVLFNPDAKGVTCCSDVEILREKVYAALEESTRTTYP 343
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++ C+K ++L NPD+RG+ R ++ ++V L
Sbjct: 213 VGVMFDRILSELSLKMRQMRVDQAELACLKAVILFNPDLRGVKGRQEIDAIRDKVYALLE 272
Query: 56 DYCIT 60
D+C T
Sbjct: 273 DHCRT 277
>gi|353231262|emb|CCD77680.1| FTZ-F1 nuclear receptor-like protein [Schistosoma mansoni]
Length = 784
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 52 KALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS 111
+AL D+ + + DDQ+ L+Q+ W+D+L LD + + P E L + + +L +
Sbjct: 685 RALPDFSL-----LDTDDQILLIQNCWADLLCLDCCWRSL--PTPSEIRLTSSKCINLEA 737
Query: 112 LGLLGVPTLRDRFTQVTHKLSELKF 136
+G + +R Q+T L+ L+
Sbjct: 738 AREMGAEEIVERILQLTQSLTRLQL 762
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 55 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 104
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 363 LHVDSAEYSCIKAIVLFTSDACGLSDAAHIEALQEKSQCALEEYVRSQYP 412
>gi|211926878|dbj|BAG82652.1| estrogen receptor beta [Acipenser schrenckii]
Length = 553
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +LP + +++G EHLY C P + LL+EMLHA
Sbjct: 476 RLANLLMLLPHIRHASNKGIEHLYSMKCKNIVPLRELLLEMLHA 519
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+L D +++ C+K ++ +PD RG+ N T +++ QV L DY
Sbjct: 328 DLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNLEDY 372
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 350
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYASLESYTKQKYP 400
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 380 VEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 439
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 440 TFLMEMLEA 448
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 351
>gi|74209898|dbj|BAE21258.1| unnamed protein product [Mus musculus]
Length = 115
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 42 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 101
Query: 176 TLLMEMLHA 184
+ LMEML
Sbjct: 102 SFLMEMLET 110
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 12 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 63
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+L D +++ C+K ++ +PD RG+ N T +++ QV L DY
Sbjct: 280 DLSLDANEFACLKAIVFFDPDARGLNNPTKIKQMRSQVMCNLEDY 324
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ N ++ QVQ +L DY
Sbjct: 334 EIQIDDNEYACLKAIVFFDPDAKGLSNPVKIKNMRYQVQISLEDY 378
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 288 LHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYP 337
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 312
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPD +G+ + VE E+V AL + T YP
Sbjct: 332 EMKMDKTELGCLRAIVLFNPDAKGVTCCSDVEILREKVYAALEESTRTTYP 382
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 245 ELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 289
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
LK D ++ C++ ++L NPDVRG+ + VE+ E V AL Y +P
Sbjct: 227 LKMDKTELGCLRAIILFNPDVRGLTSADRVEKYRELVYGALEAYVKKRFP 276
>gi|260836451|ref|XP_002613219.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
gi|229298604|gb|EEN69228.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
Length = 399
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ +LP L E+A++ +H Y G P L +EML AK
Sbjct: 345 RIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEMLDAK 389
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 193 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 252
Query: 56 DYCITAYP 63
Y YP
Sbjct: 253 AYTKQKYP 260
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 289 LHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYP 338
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L D G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYGCLKAIALFTQDACGLSDPAHVESLQEKAQVALTEYVRAQYP 344
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 115 LGVPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAP 173
L V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 377 LEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 436
Query: 174 TQTLLMEMLHA 184
T LMEML A
Sbjct: 437 IDTFLMEMLEA 447
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 349 DMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREKVYASLETYTKQKYP 399
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 116 GVPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPT 174
GV TL+D+ K K+P +FGKL+ +LP+L I E L+ + G P
Sbjct: 289 GVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIGNIPI 348
Query: 175 QTLLMEMLHA 184
+ LL +M A
Sbjct: 349 ERLLCDMYKA 358
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYP 417
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 397 VEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 456
Query: 176 TLLMEML 182
T LMEML
Sbjct: 457 TFLMEML 463
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKAELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYP 417
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP
Sbjct: 370 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYATLEAYTKQKYP 420
Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 400 VEGLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 459
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 460 TFLMEMLE 467
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP
Sbjct: 352 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEAYTKQKYP 402
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 382 VEALREKVYASLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 441
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 442 TFLMEMLEA 450
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L D G+ + HVE E+ Q AL +Y YP
Sbjct: 268 LQVDSAEYGCLKAIALFTQDACGLSDPAHVESLQEKAQVALTEYVRAQYP 317
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 300 LHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 349
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 322
>gi|4322668|gb|AAD16119.1| retinoic acid receptor RXR [Schistosoma mansoni]
Length = 743
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L ++ ++ ++L NPD G+ +R VE EQ+ AL YC T PQ
Sbjct: 574 DLSLQRTELALLRAIILFNPDANGLSSRHRVEAVREQLYSALHSYCTTNQPQ 625
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQVQVSLEDY 322
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 293 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 337
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62
L D ++Y C+K ++L D G+ + H+E E+ Q AL +YC T Y
Sbjct: 255 LHVDSAEYSCLKAIVLFTTDACGLSDVGHIESLQEKSQCALEEYCRTQY 303
>gi|256089112|ref|XP_002580660.1| retinoic acid receptor RXR [Schistosoma mansoni]
gi|350645791|emb|CCD59553.1| retinoic acid receptor RXR [Schistosoma mansoni]
Length = 743
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L ++ ++ ++L NPD G+ +R VE EQ+ AL YC T PQ
Sbjct: 574 DLSLQRTELALLRAIILFNPDANGLSSRHRVEAVREQLYSALHSYCTTNQPQ 625
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|354493673|ref|XP_003508964.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 4
[Cricetulus griseus]
Length = 449
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRMRSQVQVSLEDY 322
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 34/52 (65%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E + + + +C+K ++LLNPD+ G+ N+ +E+ ++V AL ++ A+P+
Sbjct: 246 EFQLEKVEIVCMKMIILLNPDLPGLQNQQLIEQLQDKVHSALQEHINLAFPR 297
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|354493671|ref|XP_003508963.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 3
[Cricetulus griseus]
Length = 439
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|374579233|ref|ZP_09652327.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
youngiae DSM 17734]
gi|374415315|gb|EHQ87750.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
youngiae DSM 17734]
Length = 162
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 66 QVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFT 125
++DD + L H +++ + H Q ++ LPD H QK D+ S + GV + FT
Sbjct: 13 KLDDYIDSLTHKKENLIGVLHYAQEIYGYLPDNVQWHIAQKLDIPSATVYGVVSFYSFFT 72
Query: 126 QV 127
V
Sbjct: 73 MV 74
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP
Sbjct: 304 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYASLESYTKQKYP 354
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + + D L G S GV
Sbjct: 231 IPHFSELPLDDQVILLRAGWNELLIASFSHRSV--TVKDGILLATGLHVHRSSAHSAGVG 288
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
++ DR T++ K+ ++
Sbjct: 289 SIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYASLESY 348
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 349 TKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 402
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L PD + N ++ E+ AL Y T YP
Sbjct: 220 SLQIDAAEYACLKAMILFTPDTPSLNNSAYIHTLQEKAMNALESYTKTKYP 270
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEALREKVYASLESYTKQKYP 400
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 380 VEALREKVYASLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFFFKLIGDTPID 439
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 440 TFLMEMLEA 448
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ + + VE E+V L Y YP+
Sbjct: 364 DMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPE 415
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C+K ++L NP+ + + + V ++V AL
Sbjct: 287 VGTIFDRLLSELVNKMREMKMDKTELGCLKAIILFNPEAKHLKSTQEVTNLRDKVYTALE 346
Query: 56 DYCITAYPQ 64
+YC YPQ
Sbjct: 347 EYCKQMYPQ 355
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ N ++ QVQ +L DY
Sbjct: 275 EIQIDDNEYACLKAIVFFDPDAKGLSNPMKIKNMRYQVQISLEDY 319
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ + D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DTQMDKSELGCLRAVVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 12 LELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+E+ D S++ C+K L+ +PD +G+ R ++ QVQ L DY
Sbjct: 276 VEVAIDDSEFACLKALVFFDPDAKGLSERGKIKSMRYQVQLNLEDY 321
>gi|171362735|dbj|BAG14374.1| retinoid X receptor gamma homolog [Lepisosteus platyrhinchus]
Length = 285
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP+
Sbjct: 216 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYASLEAYTKQKYPE 267
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|341878517|gb|EGT34452.1| CBN-NHR-14 protein [Caenorhabditis brenneri]
Length = 439
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGIL--NRTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI R + E + + KAL Y
Sbjct: 253 LRTDHAEFSCLKALLLLNPDVVGISTGTRDRIRESRDALLKALFAY 298
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRIRYQVQVSLEDY 312
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|52843268|gb|AAU88063.1| estrogen receptor-related receptor short isoform [Branchiostoma
floridae]
Length = 455
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ +LP L E+A++ +H Y G P L +EML AK
Sbjct: 395 RIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEMLDAK 439
>gi|112984304|ref|NP_001037470.1| protein ultraspiracle homolog [Bombyx mori]
gi|1345734|sp|P49700.1|USP_BOMMO RecName: Full=Protein ultraspiracle homolog; AltName: Full=BmCF1;
AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=RXR type hormone receptor CF1
gi|456395|gb|AAC13750.1| RXR type hormone receptor [Bombyx mori]
Length = 462
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++ + +K ++LLNPDV+G+ N+ V+ E++ L
Sbjct: 337 VGQIFDRVLSELSLKMRSLRMDQAECVALKAIILLNPDVKGLKNKQEVDVLREKMFLCLD 396
Query: 56 DYC 58
+YC
Sbjct: 397 EYC 399
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ +L NPD +G+ + VE E+V +L YC YP
Sbjct: 361 DMNMDKAELGCLRATVLFNPDAKGLSSPCDVEALREKVYASLESYCKQKYP 411
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 299 LHVDSAEYSCIKAIVLFTTDACGLSDAAHIESLQEKSQCALEEYVRSQYP 348
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|251823756|ref|NP_001156563.1| estrogen-related receptor beta type 2 [Oryzias latipes]
gi|146395240|gb|ABQ24187.1| estrogen-related receptor beta type 2 [Oryzias latipes]
Length = 431
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 55/177 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALP--DETTLHNGQKFD-------- 108
I + + + DQM LLQ +W ++LVL + + +LP DE D
Sbjct: 259 IPGFATLSLADQMSLLQSAWMEILVLSIVFR----SLPCDDEIVYAEDYVVDEEQARISG 314
Query: 109 LLSLGLLGVPTLRDRFTQVTHK------LSELKFPNCD---------------------- 140
LL L + VP +R R+ ++ + L + N D
Sbjct: 315 LLDLHVAIVPLVR-RYKKLRMEKEEFVMLKAIALANSDSMHIENIEAVQKLQDSLHEALQ 373
Query: 141 ------------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GKL+ LP L + A++ +H Y G P L +EML AK
Sbjct: 374 DFEASQHPEDPRRVGKLLMTLPLLRQTATKAVQHFYSIKMQGKVPMHKLFLEMLEAK 430
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ +L NPD +G+ + VE E+V +L YC YP
Sbjct: 375 DMNMDKAELGCLRATVLFNPDAKGLSSPCDVEALREKVYASLESYCKQKYP 425
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 256 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 300
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 256 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 300
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 220 LHVDSAEYSCIKAIVLFTTDACGLSDAAHIESLQEKSQCALEEYVRSQYP 269
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++K D ++ C++ ++L NP+ RG+ + VE+ E V AL +Y +YP
Sbjct: 473 DIKMDKTELGCLRAIVLYNPEARGLRSVAEVEQFREGVYIALEEYTRMSYP 523
>gi|402574699|ref|YP_006624042.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
meridiei DSM 13257]
gi|402255896|gb|AFQ46171.1| NADH:ubiquinone oxidoreductase 24 kD subunit [Desulfosporosinus
meridiei DSM 13257]
Length = 174
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 63 PQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRD 122
P Q+DD + + + +++++ H Q++ LPD+ H QK DL S + GV +
Sbjct: 10 PYQQLDDYIDSIPYKKENLILILHRAQQIFGYLPDKVQWHIAQKLDLPSAKIYGVVSFYS 69
Query: 123 RFT 125
FT
Sbjct: 70 FFT 72
>gi|409178671|gb|AFV25501.1| ultraspiracle, partial [Drosophila hydei]
Length = 443
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L N D+RGI NR +E E+V L ++C +P
Sbjct: 345 LNLDRRELSCLKAIILYNSDIRGIKNREDIELCREKVYACLDEHCRLEHP 394
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +Y YP
Sbjct: 305 SLHVDSAEYSCLKAIVLFTADSHGLSDMTHIESVQEKSQCALEEYVRHQYP 355
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ N + QVQ +L DY
Sbjct: 279 EIQIDDNEYACLKAIVFFDPDAKGLSNSMKIRNMRFQVQISLEDY 323
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ + + VE E+V L Y YP+
Sbjct: 365 DMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPE 416
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V +LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 395 VESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 454
Query: 176 TLLMEML 182
T LMEML
Sbjct: 455 TFLMEML 461
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQVDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 322
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ + + VE E+V L Y YP+
Sbjct: 365 DMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPE 416
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V +LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 395 VESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 454
Query: 176 TLLMEML 182
T LMEML
Sbjct: 455 TFLMEML 461
>gi|154147724|ref|NP_001093680.1| estrogen-related receptor gamma [Xenopus (Silurana) tropicalis]
gi|134024290|gb|AAI36152.1| esrrg protein [Xenopus (Silurana) tropicalis]
Length = 435
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE D L G+
Sbjct: 263 IPGFSTLSLADQMSLLQSAWMEILILGIVNRSL--SFEDELVYAEDYIMDEDQSKLAGLL 320
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 321 ELNNAILQLVKKYKTMKLEKEEFVTLKAIALANSDSMHIEDIEAVQKLQDVLHEALQDYE 380
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GKL+ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 381 AGQHIEDPRRAGKLLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 434
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 313 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 362
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 286 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 335
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 16 FDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
D ++ C+K L+L P+ RG+ + HVEE +Q Q+ L + + + P
Sbjct: 379 IDQGEFACLKALVLFRPETRGLKDFAHVEELQDQAQQMLARHSMASGP 426
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 354
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 313
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 361
>gi|329026153|gb|AEB71792.1| estrogen receptor alpha [Acheilognathus yamatsutae]
Length = 568
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 152 LHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ ++++G EHLYH C P LL+EML A+R
Sbjct: 483 IRHMSNKGMEHLYHMKCKNRVPLYDLLLEMLDAQR 517
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 354
>gi|56692005|emb|CAD32175.1| putative estrogen receptor alpha [Candidia barbatus]
Length = 565
Score = 37.7 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 152 LHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ ++++G EHLYH C P LL+EML A+R
Sbjct: 485 IRHMSNKGMEHLYHMKCKNRVPLYDLLLEMLDAQR 519
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP V+G+ + +E E+V AL
Sbjct: 223 VGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQVIESLRERVYAALE 281
Query: 56 DYCITAYP 63
+YC YP
Sbjct: 282 EYCKQQYP 289
>gi|52843266|gb|AAU88062.1| estrogen receptor-related receptor long isoform [Branchiostoma
floridae]
Length = 496
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ +LP L E+A++ +H Y G P L +EML AK
Sbjct: 436 RIGKILMMLPLLREVATKAVQHFYTIKMEGQVPMHKLFLEMLDAK 480
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 313 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 362
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP V+G+ + +E E+V AL
Sbjct: 217 VGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQVIESLRERVYAALE 275
Query: 56 DYCITAYP 63
+YC YP
Sbjct: 276 EYCKQQYP 283
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL E+K D ++ C++ ++L NP V+G+ + +E E+V AL
Sbjct: 202 VGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQVIESLRERVYAALE 260
Query: 56 DYCITAYP 63
+YC YP
Sbjct: 261 EYCKQQYP 268
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 319 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 368
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 37.7 bits (86), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 354
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ + + VE E+V L Y YP+
Sbjct: 348 DMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPE 399
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V +LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 378 VESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 437
Query: 176 TLLMEML 182
T LMEML
Sbjct: 438 TFLMEML 444
>gi|378925274|dbj|BAL63405.1| retinoic X receptor gamma, partial [Solea senegalensis]
Length = 217
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 137 VGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLE 196
Query: 56 DYCITAYP 63
Y YP
Sbjct: 197 SYTKQKYP 204
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 305 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 354
>gi|1718061|sp|P54779.1|USP_MANSE RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|1304738|gb|AAB64234.1| MsUSP-1 protein [Manduca sexta]
Length = 461
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ N+ V E++ L
Sbjct: 336 VGQIFDRVLSELSLKMRTLRMDQAEYVALKAIILLNPDVKGLKNKPEVVVLREKMFSCLD 395
Query: 56 DY 57
+Y
Sbjct: 396 EY 397
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 350
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 350 DMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYP 400
Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 380 VEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 439
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 440 TFLMEMLEA 448
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 351
>gi|311772245|pdb|3OS8|A Chain A, Estrogen Receptor
gi|311772246|pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P+ LL+EML A R
Sbjct: 208 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPSYDLLLEMLDAHR 253
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ + + VE E+V L Y YP+
Sbjct: 364 DMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREKVYATLEAYTKQKYPE 415
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V +LR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 394 VESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 453
Query: 176 TLLMEML 182
T LMEML
Sbjct: 454 TFLMEML 460
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 272 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 321
>gi|311772247|pdb|3OS8|C Chain C, Estrogen Receptor
gi|311772248|pdb|3OS8|D Chain D, Estrogen Receptor
gi|311772249|pdb|3OS9|A Chain A, Estrogen Receptor
gi|311772250|pdb|3OS9|B Chain B, Estrogen Receptor
gi|311772251|pdb|3OS9|C Chain C, Estrogen Receptor
gi|311772252|pdb|3OS9|D Chain D, Estrogen Receptor
gi|311772253|pdb|3OSA|A Chain A, Estrogen Receptor
gi|311772254|pdb|3OSA|B Chain B, Estrogen Receptor
gi|311772255|pdb|3OSA|C Chain C, Estrogen Receptor
gi|311772256|pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P+ LL+EML A R
Sbjct: 208 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPSYDLLLEMLDAHR 253
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 348 DMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYP 398
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 378 VEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 437
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 438 TFLMEMLEA 446
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 271 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 320
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 303 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 352
>gi|449275308|gb|EMC84181.1| Hepatocyte nuclear factor 4-gamma [Columba livia]
Length = 441
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ N ++ QVQ +L DY
Sbjct: 263 EIQIDDNEYACLKAIVFFDPDAKGLSNPMKIKNMRFQVQISLEDY 307
>gi|443688986|gb|ELT91508.1| hypothetical protein CAPTEDRAFT_153528 [Capitella teleta]
Length = 389
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 15 KFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ D +++ VK LLLL+PDV+ + N + + E + AL+ Y T +P+
Sbjct: 288 EIDAYEFVAVKALLLLSPDVKNLKNENVIRQQQEILLDALMSYTTTHFPK 337
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 314 LHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCALEEYVRSQYP 363
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 308 LHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCALEEYVRSQYP 357
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 351
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 351
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + ++DQ+ LL+ W+++L+ H+ M + D L G S GV
Sbjct: 216 IPHFTDLPIEDQVVLLKAGWNELLIASFSHRSM--GVEDGIVLATGLVIHRSSAHQAGVG 273
Query: 119 T------------LRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYH 165
LR++ + + +P+ +F KL+ LP L I + E+L+
Sbjct: 274 AIFDRVLSELVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALMSIGLKCLEYLFL 333
Query: 166 KHCNGGAPTQTLLMEML 182
G P + LM+ML
Sbjct: 334 FKLIGDTPLDSYLMKML 350
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPD + + + ++E E+V +L YC + YP
Sbjct: 382 DMSMDRTELGCLRAIVLFNPDAKDLTDPAYIETLREKVYASLEVYCKSKYP 432
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP
Sbjct: 338 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYP 388
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 309 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 358
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ N ++ QVQ +L DY
Sbjct: 276 EIQIDDNEYACLKAIVFFDPDAKGLSNPLKIKNMRFQVQISLEDY 320
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 307 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 356
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 308 LHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCALEEYVRSQYP 357
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 274 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 323
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 299 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 348
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 307 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 356
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 272 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 321
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL ++K D ++ C++ ++L NPD +G+ + VE E+V AL
Sbjct: 301 VGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKVYAALE 360
Query: 56 DYCITAYP 63
++C +P
Sbjct: 361 EHCKRHHP 368
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 311 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 360
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 314 LHVDSAEYSCLKAIVLFTTDACGLSDVAHVESLQEKSQCALEEYVRSQYP 363
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 351
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NPDVRG+ + V E++ AL +Y + P
Sbjct: 321 EMKMDRTELGCLRSIILFNPDVRGLKSIQEVSMLREKIYAALEEYTRVSCP 371
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL ++K D ++ C++ ++L NPD +G+ + VE E+V AL
Sbjct: 288 VGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKVYAALE 347
Query: 56 DYCITAYP 63
++C +P
Sbjct: 348 EHCKRHHP 355
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 361
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 286 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 335
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 311 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 360
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 361
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 361
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 309 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 358
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMRYQVQVSLEDY 322
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 278 ELQIDDNEYACLKAIIFFDPDAKGLSDPIKIKRMRYQVQVSLEDY 322
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 287 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 336
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L + D G+ + H+E E+ Q AL +Y + YP
Sbjct: 221 LHVDSAEYSCLKAVVLFSSDACGLSDTAHIESLQEKSQCALEEYVRSQYP 270
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 313 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 362
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL ++K D ++ C++ ++L NPD +G+ + VE E+V AL
Sbjct: 329 VGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTERVEMLREKVYAALE 388
Query: 56 DYCITAYP 63
++C +P
Sbjct: 389 EHCKRHHP 396
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 308 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 357
>gi|222431983|gb|ACM50918.1| HNF4alpha12 [Rattus norvegicus]
Length = 353
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|122938528|gb|ABM69088.1| hepatocyte nuclear factor 4 alpha 9 [Rattus norvegicus]
Length = 356
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 256 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 300
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L Y YP
Sbjct: 338 DMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYP 388
>gi|28628004|gb|AAO18150.1| USP-RXR [Periplaneta americana]
Length = 300
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCIT 60
E+K D ++ C++ ++L NPDVRG+ + VE E+V AL ++ T
Sbjct: 253 EMKMDKTELGCLRSVILFNPDVRGLKSAPDVEALREKVYAALEEHSRT 300
>gi|122938530|gb|ABM69089.1| hepatocyte nuclear factor 4 alpha 9 [Mus musculus]
Length = 350
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 250 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 294
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 239 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 288
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 346 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 395
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 96 PDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHE 154
PD L N Q+ V LR++ ++ K+P+ +F KL+ LP L
Sbjct: 378 PDAKGLSNPQE----------VEGLREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRS 427
Query: 155 IASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
I + EHL+ G P T LMEML A
Sbjct: 428 IGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 457
Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDAKGLSNPQEVEGLREKVYASLESYTKHKYP 409
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 243 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 292
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 449 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 498
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 299 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 348
>gi|2318028|gb|AAB66469.1| steroidogenic factor 1 [Ovis aries]
Length = 64
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 24 VKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 1 LKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 40
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 296 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 345
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 296 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 345
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 304 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 353
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 350
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 237 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 286
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 322 LHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYP 371
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 1285 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 1334
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 248 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 297
>gi|167859601|gb|ACA04755.1| NR1 nuclear receptor [Amphimedon queenslandica]
Length = 636
Score = 37.4 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 7 RQSGELELKFDI-----SDYICVKFLLLLNPDVRGIL--NRTHVEEGHEQVQKALLDYCI 59
R S E+ FD+ + C+K ++L NPD +G+ R VE EQ+ +AL C
Sbjct: 524 RVSHEISYWFDVLHVDKVEMACLKGIILFNPDAKGLNPGTRKRVEIFQEQILQALETRCK 583
Query: 60 TAYP 63
T YP
Sbjct: 584 TMYP 587
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 152 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 201
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDY 312
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 350
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 312 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 361
>gi|340372145|ref|XP_003384605.1| PREDICTED: retinoic acid receptor RXR-gamma [Amphimedon
queenslandica]
Length = 636
Score = 37.4 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 7 RQSGELELKFDI-----SDYICVKFLLLLNPDVRGIL--NRTHVEEGHEQVQKALLDYCI 59
R S E+ FD+ + C+K ++L NPD +G+ R VE EQ+ +AL C
Sbjct: 524 RVSHEISYWFDVLHVDKVEMACLKGIILFNPDAKGLNPGTRKRVEIFQEQILQALETRCK 583
Query: 60 TAYP 63
T YP
Sbjct: 584 TMYP 587
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 261 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 310
>gi|297342908|pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
gi|297342909|pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 251
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 350
>gi|222431989|gb|ACM50921.1| HNF4alpha12 [Mus musculus]
Length = 353
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 253 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 297
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 301 LHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYP 350
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 234 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 283
>gi|146386669|pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
gi|146386670|pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
gi|151567942|pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
gi|151567943|pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
gi|170292261|pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
gi|170292262|pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
gi|170292269|pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
gi|170292270|pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
gi|170292277|pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
gi|170292278|pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
gi|170292281|pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
gi|170292282|pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
gi|170292289|pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
gi|170292290|pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
gi|170292319|pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
gi|170292320|pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
gi|170292325|pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
gi|170292326|pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
gi|170292332|pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
gi|170292333|pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 252
>gi|122938532|gb|ABM69090.1| hepatocyte nuclear factor 4 alpha 3 [Rattus norvegicus]
gi|122938534|gb|ABM69091.1| hepatocyte nuclear factor 4 alpha 3 [Mus musculus]
Length = 358
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 258 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 302
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDY 312
>gi|401871335|pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
gi|401871348|pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 247
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 268 ELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDY 312
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 13 ELKFDISDYICVKFLLLLNP-------DVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65
L+ D ++Y C+K ++L P ++RG+ VE +Q Q L +YC + YP
Sbjct: 221 RLQIDSTEYACLKAIVLFKPVLPFFPVNLRGLRAPQLVERLQDQAQSMLGEYCRSQYPDQ 280
Query: 66 QV 67
QV
Sbjct: 281 QV 282
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 83 VLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG------VPTLRDRFTQVTHKLSELKF 136
VL + +M + D+T L + L + + G V LR++ + + +
Sbjct: 167 VLSELVTKMRDMKMDKTELGCLRSIILFNPDVRGLKSMQEVSLLREKIYAALEEYTRVSC 226
Query: 137 PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
PN +F KL+ LP + I + EHL+ G P +ME+L A
Sbjct: 227 PNDSGRFAKLLLRLPSIRSIGLKCLEHLFFYKLIGDVPIDEFIMELLEA 275
Score = 35.8 bits (81), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++K D ++ C++ ++L NPDVRG+ + V E++ AL +Y + P
Sbjct: 177 DMKMDKTELGCLRSIILFNPDVRGLKSMQEVSLLREKIYAALEEYTRVSCP 227
>gi|401871339|pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 247
>gi|371927399|pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
gi|371927403|pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 209 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 254
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L + D G+ + H+E E+ Q AL +Y + YP
Sbjct: 319 LHVDSAEYSCLKAIVLFSSDACGLSDSAHIESLQEKAQCALEEYDRSQYP 368
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 271 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 320
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 247 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 296
>gi|371927398|pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 209 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 254
>gi|170292266|pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
gi|197304944|pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 252
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 269 ELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDY 313
>gi|47230214|emb|CAG10628.1| unnamed protein product [Tetraodon nigroviridis]
Length = 437
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 53/176 (30%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF--DLLSLGLLG 116
I + + + DQM LLQ +W ++L+L + + +LP E L + + D L G
Sbjct: 265 IPGFSSLSLGDQMSLLQSAWMEILILSIVFR----SLPYEDELVYAEDYIMDEEHSRLTG 320
Query: 117 VPTLRDRFTQVTHKLSELK-------------FPNCD----------------------- 140
+ L Q+ K +LK N D
Sbjct: 321 LLDLYVSILQLVRKFKKLKVEKEEFVTLKAIALANSDSMHIEDMEAVQKLQDALHEALQD 380
Query: 141 -----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GKL+ LP L + A++ +H Y G P L++EML AK
Sbjct: 381 YENGQHQEDPRRAGKLLMTLPLLPQTATKAVQHFYSIKVQGKVPMHKLILEMLEAK 436
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 250 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 299
>gi|33357317|pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357318|pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357319|pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
gi|33357320|pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 137 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 181
>gi|3659931|pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
gi|3659932|pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
++ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 206 ERLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 252
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 326 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIENLQEKSQCALEEYVRSQYP 375
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 172 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 221
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+L+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 268 DLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 312
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 255 ELQIDDNEYACLKAIVFFDPDAKGLSDPGKIKRMRYQVQVSLEDY 299
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+L+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 277 DLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 321
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 184 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 233
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
+L+ D ++Y C+K ++ +PD +G+ + + ++ QVQ +L DY
Sbjct: 241 DLQIDDNEYACLKAIVFFDPDAKGLSDPSKIKRMRYQVQVSLEDY 285
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,081,152,187
Number of Sequences: 23463169
Number of extensions: 120388137
Number of successful extensions: 233810
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 230159
Number of HSP's gapped (non-prelim): 3680
length of query: 187
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 53
effective length of database: 9,215,130,721
effective search space: 488401928213
effective search space used: 488401928213
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)