BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12692
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 94/173 (54%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ ++VDDQ KLLQHSWSD LVLDH+H R+HN LPDET L+NGQ F+ VP L
Sbjct: 72 FKDLKVDDQXKLLQHSWSDXLVLDHLHHRIHNGLPDETQLNNGQVFNLXSLGLLGVPQLG 131
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 132 DYFNELQNKLQDLKFDXGDYVCXKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 191
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H A RGE+HLY KHC G APTQTLL E LHAKRK
Sbjct: 192 YPSVNDKFRGLVNILPEIHAXAVRGEDHLYTKHCAGSAPTQTLLXEXLHAKRK 244
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD DY+C KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 130 LGDYFNELQNKLQDLKFDXGDYVCXKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 189
Query: 60 TAYPQI 65
T YP +
Sbjct: 190 TCYPSV 195
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 80 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 139
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 140 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 199
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 200 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 254
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 155 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 205
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 81 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 140
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 141 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 200
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 201 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 255
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 156 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 206
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 70 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 129
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 130 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 189
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 190 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 244
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 145 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 195
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 82 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 141
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 142 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 201
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 202 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 256
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 157 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 207
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 177 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 236
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 237 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 296
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 297 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 351
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 252 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 302
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 50/173 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D TL
Sbjct: 70 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 129
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 130 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 189
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHA
Sbjct: 190 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHA 242
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 145 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 195
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 73 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 132
Query: 122 DRFT---QVTHKLSELKFPN----CDKF-------------------------------- 142
+ + ++ +L L+F C KF
Sbjct: 133 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 192
Query: 143 -----------GKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
G+L+ LPEL I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 193 VCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 247
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 148 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 198
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 68 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 127
Query: 122 DRFT---QVTHKLSELKFPN----CDKF-------------------------------- 142
+ + ++ +L L+F C KF
Sbjct: 128 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 187
Query: 143 -----------GKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
G+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 188 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 242
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 143 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 193
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTL 120
+ +++V DQM LLQ+SWS++LVLDH+++++ D L GQ+ + L
Sbjct: 68 VFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 127
Query: 121 RD---RFTQVTHKLSELKFPN----CDKFGKLMSI------------------------- 148
R ++ +L L+ C KF L S+
Sbjct: 128 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 187
Query: 149 ------------------LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 188 TLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 243
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY ++ YP
Sbjct: 144 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYP 193
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTL 120
+ +++V DQM LLQ+SWS++LVLDH+++++ D L GQ+ + L
Sbjct: 70 VFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 129
Query: 121 RD---RFTQVTHKLSELKFPN----CDKFGKLMSI------------------------- 148
R ++ +L L+ C KF L S+
Sbjct: 130 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 189
Query: 149 ------------------LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 190 TLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 245
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY ++ YP
Sbjct: 146 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYP 195
>pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 50/176 (28%)
Query: 61 AYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTL 120
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ + L
Sbjct: 64 VFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLL 123
Query: 121 RD---RFTQVTHKLSELKFPN----CDKFGKLMSI------------------------- 148
R ++ +L L+ C KF L S+
Sbjct: 124 HSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDY 183
Query: 149 ------------------LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 184 TLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 239
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 140 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 189
>pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 190 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 241
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 40 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 94
Query: 90 RMHNALPDETTLHNGQKFD 108
++ + L GQ+ +
Sbjct: 95 QVQHGKEGSILLVTGQEVE 113
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 148 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 191
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 139 VGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 198
Query: 56 DYC 58
+YC
Sbjct: 199 EYC 201
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+GN Y R EL E+K D ++ C++ ++L NPDVRGI + VE E++ L
Sbjct: 116 VGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLE 175
Query: 56 DYCITAYP 63
+Y T +P
Sbjct: 176 EYTRTTHP 183
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ + + DQ++LL+ W+++L+ H+ M D L G + V +
Sbjct: 63 FTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ--DAIVLATGLTVNKSTAHAVGVGNIY 120
Query: 122 DR-FTQVTHKLSELKF-------------------------------------------- 136
DR +++ +K+ E+K
Sbjct: 121 DRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 180
Query: 137 --PN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
PN +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 181 THPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG 231
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR VE E++ L
Sbjct: 138 VGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLD 197
Query: 56 DYC 58
+YC
Sbjct: 198 EYC 200
>pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 194 DKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 240
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 39 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 93
Query: 90 RMHNALPDETTLHNGQKFD 108
++ + L GQ+ +
Sbjct: 94 QVQHGKEGSILLVTGQEVE 112
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 147 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 190
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 116 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 175
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 176 TYCKQKYPEQQ 186
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 163 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 222
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 223 TFLMEMLEA 231
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N + VE E+V +L
Sbjct: 115 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLE 174
Query: 56 DYCITAYPQIQ 66
YC YP+ Q
Sbjct: 175 TYCKQKYPEQQ 185
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 162 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 221
Query: 176 TLL 178
T L
Sbjct: 222 TFL 224
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL ++K D ++ C++ ++L NPD +G+ + + VE E+V +L
Sbjct: 106 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLE 165
Query: 56 DYCITAYPQ 64
+YC YP+
Sbjct: 166 EYCKQQYPE 174
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + +DDQ+ LL+ W+++L+ H+ + + D L +G V
Sbjct: 50 IPHFSDLPIDDQVILLRAGWNELLIAAFSHRSID--VKDGILLASGLHVHRSSAHQAGVG 107
Query: 119 TLRDR-FTQVTHKLSELKFPNCD------------------------------------- 140
T+ DR T++ K+ ++K +
Sbjct: 108 TIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPSLVESLREKVYASLEEY 167
Query: 141 ----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 168 CKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 219
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 179 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 230
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 106 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 163
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 164 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 223
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 224 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 277
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
E+K D ++ C++ ++L NP+ +G+ + VE E+V L +YC YP
Sbjct: 160 EMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENLREKVYAILEEYCRQTYP 210
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ V+DQ+ LL+ W+++L+ H+ M ++ D L G V
Sbjct: 87 IPHFTELPVEDQVILLKSGWNELLIAGFSHRSM--SVKDGIMLATGLVVHRNCAHQAGVG 144
Query: 119 TLRDR-FTQVTHKLSELKFPNCDKFGKLMSIL---PELHEIASRGE-----EHLY---HK 166
+ DR T++ K+ E+K + G L SI+ PE + S + E +Y +
Sbjct: 145 AIFDRVLTELVAKMREMKMDKTE-LGCLRSIVLFNPEAKGLKSTQQVENLREKVYAILEE 203
Query: 167 HCNGGAPTQT 176
+C P Q+
Sbjct: 204 YCRQTYPDQS 213
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 122 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 181
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 182 AYCKHKYPE 190
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 66 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 123
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 124 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 183
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 184 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 237
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 124 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 183
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 184 AYCKHKYPE 192
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 68 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 125
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 126 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 185
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 186 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 239
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 122 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 181
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 182 AYCKHKYPE 190
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 66 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 123
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 124 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 183
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 184 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 237
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 120 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 179
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 180 AYCKHKYPE 188
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V +
Sbjct: 67 FSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 124
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 125 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 184
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 185 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 120 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 179
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 180 AYCKHKYPE 188
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 64 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 121
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 122 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 181
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 182 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 235
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 119 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 178
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 179 AYCKHKYPE 187
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 63 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 120
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 121 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 180
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 181 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 234
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 177
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 178 AYCKHKYPE 186
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 62 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 119
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 120 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 179
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 180 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 177
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 178 AYCKHKYPE 186
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 62 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 119
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 120 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 179
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 180 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 116 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 175
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 176 AYCKHKYPE 184
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 60 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 117
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 118 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 177
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 178 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 231
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 177
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 178 AYCKHKYPE 186
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 50/171 (29%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVPTLR 121
+ ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V +
Sbjct: 65 FSELPLDDQVILLRAGWNELLIASASHRSI--AVKDGILLATGLHVHRNSAHSAGVGAIF 122
Query: 122 DR-FTQVTHKLSEL---------------------------------------------- 134
DR T++ K+ ++
Sbjct: 123 DRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH 182
Query: 135 KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 183 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 233
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 114 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 173
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 174 AYCKHKYPE 182
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 58 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 115
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 116 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 175
Query: 135 ---KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 176 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 229
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 115 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 174
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 175 AYCKHKYPE 183
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 59 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 116
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 117 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 176
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 177 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 230
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 116 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 175
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 176 AYCKHKYPE 184
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 60 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 117
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 118 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 177
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 178 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 231
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL +++ D ++ C++ ++L NPD +G+ N VE E+V +L
Sbjct: 115 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLE 174
Query: 56 DYCITAYPQ 64
YC YP+
Sbjct: 175 AYCKHKYPE 183
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G V
Sbjct: 59 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 116
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 117 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 176
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
K+P +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 177 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 228
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G+ + R EL +++ D S+ C++ ++L NPD +G+ N + VE E+V L
Sbjct: 121 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLE 180
Query: 56 DYCITAYPQ 64
Y YP+
Sbjct: 181 AYTKQKYPE 189
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 168 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 227
Query: 176 TLLMEML 182
T LMEML
Sbjct: 228 TFLMEML 234
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 171 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 220
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 1 MGNYYPRQSGEL-----ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL ++K D ++ C++ ++L NPD +G+ VE+ E+V +L
Sbjct: 110 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLE 169
Query: 56 DYCITAYPQ 64
+Y + YP+
Sbjct: 170 EYTKSRYPE 178
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++ ++P +F KL+ LP L I + EHL+ G P
Sbjct: 157 VEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPID 216
Query: 176 TLLMEMLH 183
T LMEML
Sbjct: 217 TFLMEMLE 224
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D ++ C++ ++L NPDV+ + H+E E+V +L YC + YP
Sbjct: 154 DMMMDKTELGCLRAVVLFNPDVKNPSDSAHIESLREKVYASLEAYCRSKYP 204
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
+ +LR++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 184 IESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 243
Query: 176 TLLMEML 182
LM ML
Sbjct: 244 KFLMNML 250
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 54 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 111
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 112 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 171
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 172 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 225
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 55 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 112
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 113 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 172
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 173 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 226
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 79 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 136
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 137 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 196
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 197 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 250
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 58 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 115
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 116 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 175
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 176 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 229
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 71 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 128
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 129 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 188
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 189 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 242
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P+ LL+EML A R
Sbjct: 208 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPSYDLLLEMLDAHR 253
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P+ LL+EML A R
Sbjct: 208 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPSYDLLLEMLDAHR 253
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 251
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 209 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 254
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 252
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 247
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 209 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 254
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 252
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 247
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
++ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 206 ERLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 252
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 199 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 244
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 137 ELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 181
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 203 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 248
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 199 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 244
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 200 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 245
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 203 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 248
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 251
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 210 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 255
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 197 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 242
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 210 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 255
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 247
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 195 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 240
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 203 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 248
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 203 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 248
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 203 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 248
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 135 LHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYP 184
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 135 KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
++PN +FGKL+ LP L ++S E L+ G P +TL+ +ML
Sbjct: 182 QYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 230
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM 91
I +P +Q+ DQ+ LL+ +WS++ VL+ M
Sbjct: 60 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSM 92
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY C P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 252
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 49/175 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDXXXXXXXXVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D +
Sbjct: 79 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 136
Query: 119 TLRDRFTQVTHK-------------LSELKFPNCD------------------------- 140
L + Q+ K L + N D
Sbjct: 137 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 196
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ GK++ LP L + +++ +H Y+ G P L +EML A +
Sbjct: 197 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAVK 251
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
E++ D ++Y C+K ++ +PD +G+ + ++ QVQ L DY
Sbjct: 130 EIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQIGLEDY 174
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P+ LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPSYDLLLEMLDAHR 252
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 201 RLAQLLLILSHIRHMSNKGMEHLYSMKAKNVVPLYDLLLEMLDAHR 246
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + I+++G EHL C P LL+EML+A
Sbjct: 200 RLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNA 243
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + I+++G EHL C P LL+EML+A
Sbjct: 200 RLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNA 243
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 251
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 251
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 252
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 247
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 202 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 247
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 209 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 254
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 200 RLAQLLLILSHIRHMSNKGMEHLYSMKSKNVVPLYDLLLEMLDAHR 245
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 206 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 251
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 207 RLAQLLLILSHIRHMSNKGMEHLYSMKXKNVVPLSDLLLEMLDAHR 252
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 204 RLAQLLLILSHIRHMSNKGMEHLYSMKSKNVVPLYDLLLEMLDAHR 249
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +L+ IL + ++++G EHLY P LL+EML A R
Sbjct: 204 RLAQLLLILSHIRHMSNKGMEHLYSMKSKNVVPLYDLLLEMLDAHR 249
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVXDLLLEMLNA 237
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y +K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 137 ELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 181
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 208 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 251
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 237
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 237
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y +K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 131 ELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDY 175
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 195 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 238
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 237
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 192 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 235
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 206 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 249
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 192 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 235
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 200 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 243
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ +L+ IL + ++++G EHLY P LL+EML A
Sbjct: 200 RLAQLLLILSHIRHMSNKGMEHLYSMKSKNVVPLYDLLLEMLDA 243
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 220 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 263
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 192 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNA 235
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++V
Sbjct: 43 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMVF 90
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L D +Y +K ++L +PD G+ + + +E+ E Q L DY Y +
Sbjct: 137 KLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSE 188
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVLD 85
PD L T G QV A+ + + + +DDQM LLQ+SW ++
Sbjct: 25 PDTSTRLMSTLNRLGGRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFS 79
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVLD 85
PD L T G QV A+ + + + +DDQM LLQ+SW ++
Sbjct: 27 PDTSTRLMSTLNRLGGRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFS 81
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L+ + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 25 PDSFAALHSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVF 78
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++V
Sbjct: 43 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVF 90
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++
Sbjct: 36 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF 83
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++
Sbjct: 43 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF 90
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++
Sbjct: 37 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF 84
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++
Sbjct: 39 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF 86
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm S-22
Length = 247
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 24 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 83
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 84 FTNVNSRMLYFAPD 97
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
I+ ++ G + + I + + +DDQM LLQ+SW ++
Sbjct: 62 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF 109
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 32 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 91
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 92 FTNVNSRMLYFAPD 105
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 31 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 90
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 91 FTNVNSRMLYFAPD 104
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 24 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 83
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 84 FTNVNSRMLYFAPD 97
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 31 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 90
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 91 FTNVNSRMLYFAPD 104
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 24 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 83
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 84 FTNVNSRMLYFAPD 97
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 35 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 94
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 95 FTNVNSRMLYFAPD 108
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 26 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 85
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 86 FTNVNSRMLYFAPD 99
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 35 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 94
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 95 FTNVNSRMLYFAPD 108
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 46 GHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLD 85
G + + + + + +DDQM LLQ+SW ++
Sbjct: 40 GRQMISAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFS 79
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 26 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 85
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 86 FTNVNSRMLYFAPD 99
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 32 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 91
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 92 FTNVNSRMLYFAPD 105
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small
Molecule Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 24 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 83
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 84 FTNVNSRMLYFAPD 97
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 44 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 103
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 104 FTNVNSRMLYFAPD 117
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 38 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 97
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 98 FTNVNSRMLYFAPD 111
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 24 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 83
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 84 FTNVNSRMLYFAPD 97
>pdb|2WM4|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp124 In Complex With Phytanic Acid
pdb|2WM5|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp124
Length = 435
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDH-MHQRMHN 93
++YP I ++DQ L + M+VLD HQR+ +
Sbjct: 94 IFSSYPNITINDQTPELAEYFGSMIVLDDPRHQRLRS 130
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 41 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 100
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 101 FTNVNSRMLYFAPD 114
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain (Lbd) With Dht And A Peptide Derived
From Its Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand
Binding Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A
Non- Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 32 PDVRGILNRTHVEEGHEQ-VQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV------- 83
PD L + E G Q V + + + VDDQM ++Q+SW ++V
Sbjct: 26 PDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS 85
Query: 84 LDHMHQRMHNALPD 97
+++ RM PD
Sbjct: 86 FTNVNSRMLYFAPD 99
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 141 KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + +++G EHL + P LL+EML+A
Sbjct: 198 RLANLLMLLSHVRHASNKGMEHLLNMKSKNVVPVYDLLLEMLNA 241
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSW 78
I+ ++ G + + I + + +DDQM LLQ+SW
Sbjct: 41 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSW 82
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 37 ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSW 78
I+ ++ G + + I + + +DDQM LLQ+SW
Sbjct: 39 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSW 80
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ + +Y+ +K L L N D I + VE+ E + +ALL+Y
Sbjct: 149 LRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 192
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ + +Y+ +K L L N D I + VE+ E + +ALL+Y
Sbjct: 143 LRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 186
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ + +Y+ +K L L N D I + VE+ E + +ALL+Y
Sbjct: 143 LRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 186
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
L+ + +Y+ +K L L N D I + VE+ E + +ALL+Y
Sbjct: 144 LRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 187
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 38 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 91
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 36 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 89
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 34 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 87
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A
Destabilized Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A
Destabilized Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 35 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 88
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 33 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 86
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 32 PDVRG-ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLD 85
PD +L+ + G + V + + + +DDQM L+Q+SW ++
Sbjct: 25 PDTTNYLLSSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFS 79
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 28 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 81
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 32 PDVRG-ILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVLD 85
PD +L+ + G + V + + + +DDQM L+Q+SW ++
Sbjct: 25 PDTTNYLLSSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFS 79
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A
Peptide From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A
Peptide From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine
Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine
Ligand
Length = 256
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 32 PDVRGILNRTHVEEGHEQVQKAL-LDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84
PD L + + G Q+ + + + + +DDQ+ L+Q+SW ++V
Sbjct: 31 PDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVF 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,727,514
Number of Sequences: 62578
Number of extensions: 212888
Number of successful extensions: 820
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 399
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)