BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12692
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 OS=Bombyx mori GN=FTZ-F1 PE=1 SV=2
Length = 534
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 109/173 (63%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQ SWS MLVLDH+HQRMHN LPDETTLHNGQKFDLL LGLLGVP+L
Sbjct: 361 FKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLA 420
Query: 122 DRFTQVTHKLSELKFP------------------------------------------NC 139
D F ++ +KL+ELKF C
Sbjct: 421 DHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTC 480
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKFGKL+ ++PE+H +A+RGEEHLY +HC G APTQTLLMEMLHAKRK
Sbjct: 481 YPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRK 533
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
ELKFD+ DYICVKF+LLLNP+VRGI+N V EG++ VQ ALLDY +T YP IQ
Sbjct: 432 ELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQ 485
>sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 OS=Drosophila melanogaster GN=ftz-f1
PE=1 SV=2
Length = 1027
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 106/173 (61%), Gaps = 47/173 (27%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGVP L
Sbjct: 854 FKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLG 913
Query: 122 DRFTQVTHKLSELKF---------------PNC--------------------------- 139
D F ++ +KL +LKF P+
Sbjct: 914 DYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 973
Query: 140 -----DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
DKF L++ILPE+H +A RGE+HLY KHC G APTQTLLMEMLHAKRK
Sbjct: 974 YPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKRK 1026
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MGNYYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59
+G+Y+ +L+ LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +
Sbjct: 912 LGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTL 971
Query: 60 TAYPQI 65
T YP +
Sbjct: 972 TCYPSV 977
>sp|O42101|NR5A2_CHICK Nuclear receptor subfamily 5 group A member 2 OS=Gallus gallus
GN=NR5A2 PE=2 SV=1
Length = 501
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 326 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHVKEGSILLVTGQQVDYSVIASQAGATLN 385
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 386 NLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 445
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
DKFG+L+ LPE+ I+ + EE+LY KH NG P LL+EMLHAKR
Sbjct: 446 MCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYCKHLNGDVPCNNLLIEMLHAKR 500
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKL 73
L+FD+ +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ Q D +L
Sbjct: 401 LQFDLREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ-QTDKFGQL 459
Query: 74 L 74
L
Sbjct: 460 L 460
>sp|O00482|NR5A2_HUMAN Nuclear receptor subfamily 5 group A member 2 OS=Homo sapiens
GN=NR5A2 PE=1 SV=2
Length = 541
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D + TL
Sbjct: 366 FRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLN 425
Query: 122 DRFT---QVTHKLSELKF------------------------------------------ 136
+ + ++ KL L+F
Sbjct: 426 NLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYT 485
Query: 137 -----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 486 MCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 540
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 441 LQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 491
>sp|P45448|NR5A2_MOUSE Nuclear receptor subfamily 5 group A member 2 OS=Mus musculus
GN=Nr5a2 PE=1 SV=3
Length = 560
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 385 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFN 444
Query: 109 -LLSLGLLGVPTLRDR---------------FTQVTHKLSELK----------------- 135
LLSL V LR F+ L L+
Sbjct: 445 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 504
Query: 136 ---FPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 505 VCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 559
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 460 LQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 510
>sp|Q9QWM1|NR5A2_RAT Nuclear receptor subfamily 5 group A member 2 OS=Rattus norvegicus
GN=Nr5a2 PE=2 SV=1
Length = 560
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFD------------- 108
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+ D
Sbjct: 385 FRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSSIISNTEVAFN 444
Query: 109 -LLSLGLLGVPTLRD-----------RF---------------------TQVTHKLSELK 135
LLSL V LR +F QV L +
Sbjct: 445 NLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYT 504
Query: 136 FPN----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
N +KFG+L+ LPE+ I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 505 LCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 559
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 460 LQFDQREFVCLKFLVLFSSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQ 510
>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 OS=Macropus eugenii GN=NR5A1 PE=2 SV=1
Length = 463
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 51/179 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG---- 113
C+ + +++V DQMKLLQ+ WS++LV DH+++++ + L GQ+ DL ++
Sbjct: 285 CVV-FKELEVADQMKLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVDLSTVAAQAG 343
Query: 114 -LLGVPTLRDR-FTQVTHKLS-----------------ELKF------------------ 136
LL LR + Q H L ++KF
Sbjct: 344 SLLHSLVLRAQDLVQQLHSLQVDRQEFVCLKFLILFSLDVKFLENHGLAKDAQEKANSAL 403
Query: 137 --------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + EE+LYHKH G P LL+EMLHAKR
Sbjct: 404 LEYTMCHYPHCGDKFRQLLLRLAEVRSLSMQAEEYLYHKHLGGEVPCNNLLIEMLHAKR 462
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N ++ E+ ALL+Y + YP
Sbjct: 363 LQVDRQEFVCLKFLILFSLDVKFLENHGLAKDAQEKANSALLEYTMCHYP 412
>sp|P33242|STF1_MOUSE Steroidogenic factor 1 OS=Mus musculus GN=Nr5a1 PE=1 SV=3
Length = 462
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>sp|P50569|STF1_RAT Steroidogenic factor 1 OS=Rattus norvegicus GN=Nr5a1 PE=2 SV=1
Length = 462
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LVLDH+++++ D L GQ+ +L ++ LL
Sbjct: 287 FKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLH 346
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 347 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 406
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 407 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 461
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 362 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 411
>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 OS=Equus caballus GN=NR5A1 PE=2 SV=1
Length = 461
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + T L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSTLLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQMHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANTALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANTALLDYTLCHYP 410
>sp|P79387|STF1_PIG Steroidogenic factor 1 OS=Sus scrofa GN=NR5A1 PE=2 SV=3
Length = 461
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG-----LLG 116
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+ +L ++ LL
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 117 VPTLR-------------DRFTQVTHKL-----SELKF---------------------- 136
LR DR V K ++KF
Sbjct: 346 GLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYT 405
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLCHYP 410
>sp|Q04752|STF1_BOVIN Steroidogenic factor 1 OS=Bos taurus GN=NR5A1 PE=1 SV=1
Length = 461
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 50/175 (28%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF-------------- 107
+ +++V DQM LLQ+ WS++LV DH+++++ + L GQ+
Sbjct: 286 FKELEVADQMTLLQNCWSELLVFDHIYRQIQHGKEGSILLVTGQEVELTTVAAQAGSLLH 345
Query: 108 ---------------------DLLSLGLLGVPTLRDRFTQVTHKLSELK----------- 135
+ + L L + +L +F + E +
Sbjct: 346 SLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYT 405
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 406 LCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D +++C+KFL+L + DV+ + N + V+E E+ ALLDY + YP
Sbjct: 361 LQLDRQEFVCLKFLILFSLDVKFLNNHSLVKEAQEKANAALLDYTLCHYP 410
>sp|O76202|USP_CHOFU Protein ultraspiracle homolog OS=Choristoneura fumiferana GN=USP
PE=2 SV=1
Length = 472
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 1 MGNYYPRQSGELELKF-----DISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALL 55
+G + R EL LK D ++Y+ +K ++LLNPDV+G+ NR V+ E++ L
Sbjct: 346 VGAIFDRVLSELSLKMRTLRMDQAEYVALKAIVLLNPDVKGLKNRQEVDVLREKMFSCLD 405
Query: 56 DYC 58
DYC
Sbjct: 406 DYC 408
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25 OS=Caenorhabditis
elegans GN=nhr-25 PE=1 SV=1
Length = 572
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ ++ +DDQM LLQ SW+ + ++D + +H L + + NG + + + LLG T
Sbjct: 373 FSKLSLDDQMILLQTSWTTVHIVDITNAMVHGNLLSQYKMSNGDEVPVGLVALLGNQTFV 432
Query: 122 DRFTQVTHKLSELKFPNCD 140
+ V +L + F N D
Sbjct: 433 SSWNDVVIRLRNMGFTNFD 451
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + TH+E E+ Q AL +YC T YP
Sbjct: 434 LHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQYP 483
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 47/171 (27%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVL---------------------------------- 84
I +P++QV DQ+ LL+ WS++ VL
Sbjct: 359 IPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFM 418
Query: 85 DHMH---------QRMHNALPDETTLHNGQKFDLLSLGLLGVP---TLRDRFTQVTHKLS 132
DH+ + +H + + L F + GL V +L+++ +
Sbjct: 419 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYC 478
Query: 133 ELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
++PN +FGKL+ LP L ++S+ E L+ G P +TL+ +ML
Sbjct: 479 RTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDML 529
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP+ Q
Sbjct: 430 DMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ 483
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 460 VEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 519
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 520 TFLMEMLEA 528
>sp|Q13285|STF1_HUMAN Steroidogenic factor 1 OS=Homo sapiens GN=NR5A1 PE=1 SV=2
Length = 461
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 136 FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+C DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 409 YPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 460
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 32 PDVRGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89
P G+L R +Q +++D+ + +++V DQM LLQ+ WS++LV DH+++
Sbjct: 259 PAAFGLLCRMA-----DQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYR 313
Query: 90 RMHNALPDETTLHNGQKFDLLSLG 113
++ + L GQ+ +L ++
Sbjct: 314 QVQHGKEGSILLVTGQEVELTTVA 337
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 20 DYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++C+KF++L + D++ + N V++ E+ ALLDY + YP
Sbjct: 367 EFVCLKFIILFSLDLKFLNNHILVKDAQEKANAALLDYTLCHYP 410
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 282 LQVDAAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 331
>sp|P28704|RXRB_MOUSE Retinoic acid receptor RXR-beta OS=Mus musculus GN=Rxrb PE=2 SV=2
Length = 520
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 417 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 470
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P +F KL+ LP L I + EHL+ G P
Sbjct: 447 VEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 506
Query: 176 TLLMEMLHA 184
T LMEML A
Sbjct: 507 TFLMEMLEA 515
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K + L PD G+ + HVE E+ Q AL +Y YP
Sbjct: 295 LQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYP 344
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRM 91
+P++ V DQ+ LL+ SWS++ VL+ +
Sbjct: 223 FPELPVADQVALLRLSWSELFVLNAAQAAL 252
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+ Q
Sbjct: 355 DMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQ 408
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 46/172 (26%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM-------------------HNA----- 94
I + + +DDQ+ LL+ W+++L+ H+ + H+A
Sbjct: 282 IPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAI 341
Query: 95 ----LPDETTLHNGQKFDLLSLGLLG-----------------VPTLRDRFTQVTHKLSE 133
L + + + D LG L V LR++ +
Sbjct: 342 FDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCK 401
Query: 134 LKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 402 QKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 453
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NPD +G+ VE+ E+V +L +Y T YP+
Sbjct: 333 EMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKTRYPE 384
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++ ++P +F KL+ LP L I + EHL+ G P
Sbjct: 363 VEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPID 422
Query: 176 TLLMEML 182
T LMEML
Sbjct: 423 TFLMEML 429
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 462
>sp|Q90417|RXRBB_DANRE Retinoic acid receptor RXR-beta-B OS=Danio rerio GN=rxrbb PE=2 SV=1
Length = 422
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 322 DMQMDKTELGCLRAIVLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQ 375
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 352 VELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPID 411
Query: 176 TLLMEMLHA 184
T LMEML +
Sbjct: 412 TFLMEMLES 420
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 62 YPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLR 121
+ + +DDQ+ LL+ W+++L+ H+ + ++ DE L G S LGV
Sbjct: 238 FSDVPLDDQVILLRAGWNELLIAAFSHRSI--SVKDEILLATGLHVPKESTHNLGVEAFF 295
Query: 122 DR 123
DR
Sbjct: 296 DR 297
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 359 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 410
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 286 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 343
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 344 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 403
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 404 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 457
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 385 DMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYASLEAYCKQKYPE 436
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 312 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 369
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 370 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPLEVEALREKVYASLEAY 429
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 430 CKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 483
>sp|P20153|USP_DROME Protein ultraspiracle OS=Drosophila melanogaster GN=usp PE=1 SV=1
Length = 508
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 400 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHP 449
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 327 DMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKHKYPE 378
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + A+ D L G S GV
Sbjct: 254 IPHFSELPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHSAGVG 311
Query: 119 TLRDR-FTQVTHKLSEL------------------------------------------- 134
+ DR T++ K+ ++
Sbjct: 312 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAY 371
Query: 135 ---KFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 372 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 425
>sp|P79926|HNF4B_XENLA Hepatocyte nuclear factor 4-beta OS=Xenopus laevis GN=hnf4b PE=2
SV=1
Length = 446
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
E++ D ++Y+C+K ++ +PD +G+ ++T V+ QVQ L DY ++D+
Sbjct: 267 EIQIDDNEYVCLKAIIFFDPDCKGLSDQTKVKNMRFQVQVNLEDY---------INDRQF 317
Query: 73 LLQHSWSDMLVL 84
+ +SD+L+L
Sbjct: 318 DSRGRFSDILLL 329
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N + VE E+V +L YC YP
Sbjct: 276 DMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAYCKHKYP 326
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 50/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG-------------- 104
I + + +DDQ+ LL+ W+++L+ H+ + A+ D L G
Sbjct: 203 IPHFSDLPLDDQVILLRAGWNELLIASFSHRSI--AVKDGILLATGLHVHRNSAHTAGVG 260
Query: 105 ----------------QKFDLLSLGLLG-----------------VPTLRDRFTQVTHKL 131
+ D LG L V LR+R
Sbjct: 261 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPSEVEALRERVYASLEAY 320
Query: 132 SELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P+ +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 321 CKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 374
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+++ D ++ C++ ++L NPD +G+ + + VE E+V +L YC YP Q
Sbjct: 368 DMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQ 421
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 60/186 (32%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH-----------------------NAL 95
I + ++ +DDQ+ LL+ W+++L+ H+ + A+
Sbjct: 281 IPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLATGLHVHRNSAHSAGVGAI 340
Query: 96 PDETTLHNGQ-------------------KFDLLSLGLLG-----------------VPT 119
D + HN + + D LG L V
Sbjct: 341 FDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVEL 400
Query: 120 LRDRFTQVTHKLSELKFPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
LR++ + ++P+ +F KL+ LP L I + EHL+ G P T L
Sbjct: 401 LREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL 460
Query: 179 MEMLHA 184
MEML A
Sbjct: 461 MEMLEA 466
>sp|Q91766|HNF4A_XENLA Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis GN=hnf4a PE=2
SV=2
Length = 464
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY 57
EL+ D ++Y C+K ++ +PD +G+ + T ++ QVQ +L DY
Sbjct: 277 ELQIDDNEYACLKAIIFFDPDAKGLSDPTKIKRMRYQVQVSLEDY 321
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
+ LMEML
Sbjct: 450 SFLMEML 456
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D S+ C++ ++L NPD +G+ N + VE E+V L Y YP+
Sbjct: 360 DMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPE 411
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFP-NCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V TLR++ ++ K+P +F KL+ LP L I + EHL+ G P
Sbjct: 390 VETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 449
Query: 176 TLLMEML 182
T LMEML
Sbjct: 450 TFLMEML 456
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
++K D ++ C++ ++L NPD +G+ VE+ E+V +L +Y + YP+
Sbjct: 333 DMKMDKTELGCLRAVVLFNPDAKGLTAVQEVEQLREKVYASLEEYTKSRYPE 384
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ + ++ ++P +F KL+ LP L I + EHL+ G P
Sbjct: 363 VEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPID 422
Query: 176 TLLMEML 182
T LMEML
Sbjct: 423 TFLMEML 429
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L+ D ++Y C+K ++L D G+ + HVE E+ Q AL +Y YP
Sbjct: 280 LQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 329
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRM 91
I +P +Q+ DQ+ LL+ SWS++ VL+ M
Sbjct: 205 IPFFPDLQLMDQVALLRMSWSELFVLNAAQCSM 237
>sp|O02151|NHR14_CAEEL Nuclear hormone receptor family member nhr-14 OS=Caenorhabditis
elegans GN=nhr-14 PE=2 SV=3
Length = 435
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILN--RTHVEEGHEQVQKALLDY 57
L+ D +++ C+K LLLLNPDV GI N R + E + + K L Y
Sbjct: 252 RLRTDHAEFSCLKALLLLNPDVVGISNNTRERIREARDALLKTLFAY 298
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
L D ++Y C+K ++L D G+ + H+E E+ Q AL +Y + YP
Sbjct: 302 LHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYP 351
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 67/181 (37%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I +P +Q+ DQ+ LL+ +WS++ VL NA LH L + GL P
Sbjct: 227 IPFFPDLQITDQVSLLRLTWSELFVL--------NAAQCSMPLHVAPL--LAAAGLHASP 276
Query: 119 TLRDR----------FTQVTHKLSEL---------------------------------- 134
DR F + KL L
Sbjct: 277 MSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDACGLSDAAHIESLQE 336
Query: 135 ------------KFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
++PN +FGKL+ LP L ++S E L+ G P +TL+ +M
Sbjct: 337 KSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM 396
Query: 182 L 182
L
Sbjct: 397 L 397
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 115 LGVPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAP 173
L V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 377 LEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 436
Query: 174 TQTLLMEMLHA 184
T LMEML A
Sbjct: 437 IDTFLMEMLEA 447
Score = 37.7 bits (86), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+++ D ++ C++ ++L NPD +G+ N VE E+V +L Y YP
Sbjct: 349 DMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREKVYASLETYTKQKYP 399
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
++ D S+ C++ ++L NPD +G+ N VE E+V L Y YP
Sbjct: 367 DMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREKVYATLESYTKQKYP 417
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
V LR++ ++ K+P+ +F KL+ LP L I + EHL+ G P
Sbjct: 397 VEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPID 456
Query: 176 TLLMEML 182
T LMEML
Sbjct: 457 TFLMEML 463
>sp|P62510|ERR3_RAT Estrogen-related receptor gamma OS=Rattus norvegicus GN=Esrrg PE=2
SV=1
Length = 458
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D L G+
Sbjct: 286 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 343
Query: 119 TLRDRFTQVTHKLSELKF-------------PNCD------------------------- 140
L + Q+ K +K N D
Sbjct: 344 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 403
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 404 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 457
>sp|P62509|ERR3_MOUSE Estrogen-related receptor gamma OS=Mus musculus GN=Esrrg PE=1 SV=1
Length = 458
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D L G+
Sbjct: 286 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 343
Query: 119 TLRDRFTQVTHKLSELKF-------------PNCD------------------------- 140
L + Q+ K +K N D
Sbjct: 344 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 403
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 404 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 457
>sp|P62508|ERR3_HUMAN Estrogen-related receptor gamma OS=Homo sapiens GN=ESRRG PE=1 SV=1
Length = 458
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 49/174 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + + DQM LLQ +W ++L+L +++ + + DE + D L G+
Sbjct: 286 IPGFSTLSLADQMSLLQSAWMEILILGVVYRSL--SFEDELVYADDYIMDEDQSKLAGLL 343
Query: 119 TLRDRFTQVTHKLSELKF-------------PNCD------------------------- 140
L + Q+ K +K N D
Sbjct: 344 DLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 403
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 404 AGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,182,739
Number of Sequences: 539616
Number of extensions: 2971957
Number of successful extensions: 6171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5821
Number of HSP's gapped (non-prelim): 360
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)