Query psy12692
Match_columns 187
No_of_seqs 143 out of 1333
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plz_A FTZ-F1 related protein; 99.9 1.1E-26 3.7E-31 187.2 16.4 151 37-187 55-257 (257)
2 3v3e_B Nuclear receptor subfam 99.9 2.1E-27 7.3E-32 191.4 11.3 142 40-184 54-245 (257)
3 3oll_A Estrogen receptor beta; 99.9 3.3E-26 1.1E-30 182.4 15.5 162 23-186 8-239 (240)
4 3ltx_A Estrogen receptor; cons 99.9 6.6E-26 2.3E-30 181.2 17.1 164 22-186 9-232 (243)
5 2iz2_A FTZ-F1 alpha, nuclear h 99.9 2.2E-26 7.7E-31 183.9 13.9 150 37-186 45-243 (243)
6 2e2r_A Estrogen-related recept 99.9 1.3E-25 4.6E-30 179.4 17.6 162 23-186 22-243 (244)
7 3k6p_A Steroid hormone recepto 99.9 6.3E-26 2.1E-30 181.8 15.3 162 22-185 21-246 (248)
8 1ymt_A Steroidogenic factor 1; 99.9 1.9E-25 6.5E-30 178.7 16.1 151 37-187 44-246 (246)
9 1fcy_A RAR-gamma-1, retinoic a 99.9 6.1E-26 2.1E-30 180.5 13.2 142 40-183 46-236 (236)
10 3tx7_B Nuclear receptor subfam 99.9 1E-25 3.6E-30 188.7 14.4 151 37-187 150-352 (352)
11 1l2j_A Estrogen receptor beta; 99.9 3.2E-25 1.1E-29 179.9 15.2 178 5-186 18-265 (271)
12 1xpc_A Estrogen receptor; nucl 99.9 9.5E-25 3.2E-29 174.8 16.1 167 16-186 4-242 (248)
13 3kmr_A Retinoic acid receptor 99.9 2.5E-25 8.5E-30 180.1 12.8 145 40-186 70-263 (266)
14 3f5c_B Nuclear receptor subfam 99.9 1.3E-25 4.3E-30 182.0 10.1 150 36-185 45-267 (268)
15 1xdk_B RAR-beta, retinoic acid 99.9 6.4E-25 2.2E-29 180.7 13.4 145 40-186 73-266 (303)
16 2ocf_A Estrogen receptor; estr 99.9 2.9E-24 9.8E-29 176.5 17.1 169 14-186 11-251 (298)
17 1yye_A ER-beta, estrogen recep 99.9 1.3E-24 4.3E-29 176.1 14.5 144 40-185 33-236 (268)
18 1g2n_A Ultraspiracle protein; 99.9 2.1E-24 7.2E-29 174.3 15.5 147 40-186 44-256 (264)
19 3ilz_A Thyroid hormone recepto 99.9 4.6E-25 1.6E-29 178.6 11.1 145 40-186 72-266 (267)
20 1pdu_A DHR38, nuclear hormone 99.9 1.2E-24 4E-29 174.1 13.3 143 40-185 49-241 (244)
21 2p1t_A Retinoic acid receptor 99.9 6.4E-24 2.2E-28 169.0 15.1 162 23-186 13-237 (240)
22 2r40_D Ecdysone receptor, 20-h 99.9 5.9E-24 2E-28 172.0 13.7 144 40-186 70-264 (266)
23 3p0u_A Nuclear receptor subfam 99.9 1.9E-24 6.3E-29 173.3 8.9 150 35-185 31-236 (249)
24 2nxx_A Ultraspiracle (USP, NR2 99.9 7.7E-25 2.6E-29 174.0 6.6 162 23-186 14-233 (235)
25 2nxx_E Ecdysone receptor (ECR, 99.9 1.4E-23 4.9E-28 168.0 13.7 144 40-186 54-246 (248)
26 1lbd_A RXR_LBD, retinoid X rec 99.9 9.1E-24 3.1E-28 172.0 12.0 146 39-186 84-279 (282)
27 1nq7_A Nuclear receptor ROR-be 99.9 1.2E-23 4.1E-28 168.1 11.8 140 40-183 52-244 (244)
28 1ovl_A Orphan nuclear receptor 99.9 2.3E-23 7.7E-28 168.8 13.6 142 40-184 76-267 (271)
29 3cjw_A COUP transcription fact 99.9 2.6E-23 8.8E-28 166.0 13.2 163 23-186 11-234 (244)
30 1z5x_E Ecdysone receptor ligan 99.9 3.2E-23 1.1E-27 171.1 13.7 143 40-185 118-309 (310)
31 1hg4_A Ultraspiracle; nuclear 99.9 6.5E-23 2.2E-27 166.7 14.9 147 40-186 49-270 (279)
32 3dzy_A Retinoic acid receptor 99.9 9.9E-24 3.4E-28 182.7 9.2 144 41-186 271-464 (467)
33 1n83_A Nuclear receptor ROR-al 99.9 3.9E-23 1.4E-27 167.5 12.0 143 40-185 67-261 (270)
34 3b0t_A Vitamin D3 receptor; nu 99.9 2.3E-23 7.7E-28 167.3 10.0 144 38-183 56-254 (254)
35 3vi8_A Peroxisome proliferator 99.9 4.9E-23 1.7E-27 167.2 11.8 143 40-184 78-271 (273)
36 3l0l_A Nuclear receptor ROR-ga 99.9 2.6E-23 9E-28 166.6 9.8 140 40-183 58-248 (248)
37 3vhv_A Mineralocorticoid recep 99.9 9.6E-23 3.3E-27 164.4 13.1 146 40-185 42-243 (260)
38 1t7r_A Androgen receptor; nucl 99.9 1.7E-22 6E-27 163.6 13.9 163 23-185 23-252 (269)
39 2o4j_A Vitamin D3 receptor; nu 99.9 6.1E-23 2.1E-27 168.1 11.0 148 37-186 58-260 (292)
40 3ipq_A Oxysterols receptor LXR 99.9 2E-22 6.9E-27 164.3 13.5 143 40-185 90-282 (283)
41 1nrl_A Orphan nuclear receptor 99.9 8.5E-23 2.9E-27 168.9 11.3 145 37-186 119-315 (316)
42 1xvp_B Orphan nuclear receptor 99.9 5.3E-23 1.8E-27 164.4 8.3 140 39-183 55-246 (246)
43 3up3_A Acedaf-12; ligand bindi 99.9 3.8E-23 1.3E-27 165.2 7.4 168 13-184 2-242 (243)
44 1sqn_A PR, progesterone recept 99.9 2.7E-22 9.1E-27 161.8 11.8 162 22-185 14-244 (261)
45 3vhu_A Mineralocorticoid recep 99.9 5.2E-22 1.8E-26 162.7 13.5 146 40-185 76-277 (294)
46 2hc4_A Vitamin D receptor; alp 99.9 4.3E-22 1.5E-26 163.8 13.0 148 37-186 101-301 (302)
47 3mnp_A Glucocorticoid receptor 99.9 2.1E-21 7.1E-26 156.7 15.9 162 23-184 16-243 (261)
48 1osh_A BIle acid receptor; nuc 99.9 1.1E-21 3.7E-26 155.4 12.4 164 14-184 3-231 (232)
49 3u9q_A Peroxisome proliferator 99.9 1.8E-21 6.3E-26 157.6 12.3 139 42-184 76-268 (269)
50 1pzl_A Hepatocyte nuclear fact 99.9 5.4E-21 1.8E-25 151.5 14.1 148 37-186 40-237 (237)
51 3cqv_A Nuclear receptor subfam 99.8 4.8E-21 1.6E-25 148.5 8.4 128 40-169 22-198 (199)
52 3dzy_D Peroxisome proliferator 99.8 1.6E-20 5.6E-25 160.6 11.2 134 47-184 231-417 (419)
53 3n00_A REV-ERBA-alpha; reverba 99.8 3.7E-20 1.3E-24 148.0 6.7 127 40-168 67-242 (245)
54 3gyt_A Nuclear hormone recepto 99.8 1.9E-19 6.5E-24 143.8 7.2 169 13-185 2-243 (244)
55 3vi8_A Peroxisome proliferator 99.2 1.7E-11 5.8E-16 99.2 4.7 62 4-65 163-224 (273)
56 3cqv_A Nuclear receptor subfam 99.1 9.9E-11 3.4E-15 90.2 6.9 61 4-64 106-166 (199)
57 3dzy_D Peroxisome proliferator 99.1 4.8E-11 1.7E-15 101.9 5.3 62 4-65 309-370 (419)
58 3u9q_A Peroxisome proliferator 99.1 8.7E-11 3E-15 94.8 5.9 61 5-65 161-221 (269)
59 1fcy_A RAR-gamma-1, retinoic a 99.1 7.3E-11 2.5E-15 93.3 5.1 62 4-65 130-191 (236)
60 1nq7_A Nuclear receptor ROR-be 99.1 8.6E-11 3E-15 93.4 4.8 61 4-64 135-195 (244)
61 3ltx_A Estrogen receptor; cons 99.1 1E-10 3.6E-15 92.8 4.9 62 4-65 123-184 (243)
62 3ilz_A Thyroid hormone recepto 99.1 2.7E-10 9.1E-15 91.7 7.3 62 4-65 156-217 (267)
63 1osh_A BIle acid receptor; nuc 99.0 1.3E-10 4.3E-15 91.6 4.9 60 5-64 126-185 (232)
64 2iz2_A FTZ-F1 alpha, nuclear h 99.0 1.2E-10 4E-15 92.6 4.6 61 5-65 135-195 (243)
65 1xvp_B Orphan nuclear receptor 99.0 1.3E-10 4.5E-15 92.3 4.8 56 4-59 140-195 (246)
66 2hc4_A Vitamin D receptor; alp 99.0 1.3E-10 4.4E-15 95.2 4.9 62 4-65 190-251 (302)
67 2e2r_A Estrogen-related recept 99.0 1.3E-10 4.4E-15 92.4 4.7 61 4-64 134-194 (244)
68 3f5c_B Nuclear receptor subfam 99.0 1.3E-10 4.5E-15 93.7 4.7 79 4-91 159-237 (268)
69 3b0t_A Vitamin D3 receptor; nu 99.0 1.3E-10 4.6E-15 92.7 4.8 60 4-63 144-203 (254)
70 3n00_A REV-ERBA-alpha; reverba 99.0 1.5E-10 5.1E-15 92.2 4.9 79 4-91 151-229 (245)
71 3kmr_A Retinoic acid receptor 99.0 3.7E-10 1.3E-14 90.9 7.2 61 5-65 155-215 (266)
72 3l0l_A Nuclear receptor ROR-ga 99.0 1.4E-10 4.9E-15 92.4 4.6 60 4-63 141-200 (248)
73 3p0u_A Nuclear receptor subfam 99.0 1.4E-10 4.7E-15 92.5 4.5 61 5-65 129-189 (249)
74 1n83_A Nuclear receptor ROR-al 99.0 2.5E-10 8.5E-15 92.1 6.0 60 4-63 150-209 (270)
75 1g2n_A Ultraspiracle protein; 99.0 1.9E-10 6.4E-15 92.4 4.9 60 5-64 148-207 (264)
76 1ymt_A Steroidogenic factor 1; 99.0 1.5E-10 5.1E-15 92.0 4.1 62 4-65 136-197 (246)
77 1nrl_A Orphan nuclear receptor 99.0 1.6E-10 5.3E-15 95.4 4.4 60 4-63 205-264 (316)
78 3plz_A FTZ-F1 related protein; 99.0 1.8E-10 6.2E-15 92.3 4.7 62 4-65 147-208 (257)
79 3k6p_A Steroid hormone recepto 99.0 2.1E-10 7.3E-15 91.3 5.0 60 4-63 134-193 (248)
80 3cjw_A COUP transcription fact 99.0 1.9E-10 6.5E-15 91.3 4.7 59 6-64 127-185 (244)
81 2nxx_A Ultraspiracle (USP, NR2 99.0 2E-10 6.9E-15 90.6 4.7 79 5-92 125-203 (235)
82 2o4j_A Vitamin D3 receptor; nu 99.0 2E-10 7E-15 93.6 4.7 60 4-63 147-206 (292)
83 3ipq_A Oxysterols receptor LXR 99.0 4.9E-10 1.7E-14 90.9 6.3 62 4-65 175-236 (283)
84 1hg4_A Ultraspiracle; nuclear 99.0 3.3E-10 1.1E-14 91.5 4.7 60 5-64 162-221 (279)
85 1xdk_B RAR-beta, retinoic acid 99.0 3.7E-10 1.3E-14 92.5 4.6 61 4-64 157-217 (303)
86 3vhv_A Mineralocorticoid recep 98.9 3.4E-10 1.2E-14 90.8 3.2 61 4-64 128-189 (260)
87 3v3e_B Nuclear receptor subfam 98.9 6.5E-10 2.2E-14 89.1 4.7 60 4-64 137-198 (257)
88 3mnp_A Glucocorticoid receptor 98.9 5.2E-10 1.8E-14 89.8 3.7 60 5-64 131-191 (261)
89 3tx7_B Nuclear receptor subfam 98.9 1.1E-09 3.6E-14 91.6 5.1 62 4-65 242-303 (352)
90 1lbd_A RXR_LBD, retinoid X rec 98.9 1.2E-09 4E-14 88.5 5.0 60 5-64 171-230 (282)
91 2p1t_A Retinoic acid receptor 98.9 1.3E-09 4.5E-14 86.0 4.9 60 5-64 129-188 (240)
92 3up3_A Acedaf-12; ligand bindi 98.9 2E-09 6.8E-14 85.6 5.9 80 4-93 133-217 (243)
93 2r40_D Ecdysone receptor, 20-h 98.9 3.3E-09 1.1E-13 85.2 6.9 58 4-62 154-211 (266)
94 1sqn_A PR, progesterone recept 98.9 1E-09 3.6E-14 88.0 3.7 57 4-60 129-186 (261)
95 3vhu_A Mineralocorticoid recep 98.8 1.1E-09 3.6E-14 89.5 3.1 60 5-64 163-223 (294)
96 1t7r_A Androgen receptor; nucl 98.8 1.3E-09 4.6E-14 87.7 3.4 59 4-62 137-196 (269)
97 1pdu_A DHR38, nuclear hormone 98.8 1.9E-09 6.5E-14 85.7 3.2 59 4-63 132-190 (244)
98 2nxx_E Ecdysone receptor (ECR, 98.8 4.1E-09 1.4E-13 83.8 4.7 59 4-63 138-196 (248)
99 1z5x_E Ecdysone receptor ligan 98.7 1.5E-08 5.2E-13 83.2 6.9 58 4-62 202-259 (310)
100 3dzy_A Retinoic acid receptor 98.7 1.7E-08 5.9E-13 87.3 6.8 60 6-65 357-416 (467)
101 2ocf_A Estrogen receptor; estr 98.7 4.3E-09 1.5E-13 86.0 2.8 57 5-61 132-196 (298)
102 1yye_A ER-beta, estrogen recep 98.7 7E-09 2.4E-13 83.5 3.6 57 5-61 119-182 (268)
103 1ovl_A Orphan nuclear receptor 98.7 1E-08 3.5E-13 82.5 4.6 57 4-61 159-215 (271)
104 3oll_A Estrogen receptor beta; 98.7 3E-08 1E-12 78.3 7.2 57 5-61 121-184 (240)
105 1pzl_A Hepatocyte nuclear fact 98.7 1.6E-08 5.6E-13 79.3 5.4 59 6-64 130-188 (237)
106 1xpc_A Estrogen receptor; nucl 98.7 2.6E-09 9E-14 84.9 0.5 58 5-62 123-188 (248)
107 3gyt_A Nuclear hormone recepto 98.7 2.5E-08 8.7E-13 79.3 5.9 71 14-93 143-217 (244)
108 1l2j_A Estrogen receptor beta; 98.6 1.5E-08 5.2E-13 81.6 3.4 56 5-60 147-209 (271)
109 2b19_A Neuropeptide K, NPK; he 20.4 49 0.0017 17.1 1.4 14 65-78 4-17 (36)
No 1
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.95 E-value=1.1e-26 Score=187.21 Aligned_cols=151 Identities=34% Similarity=0.569 Sum_probs=137.3
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhh-
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG- 113 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 113 (187)
....+.+++++++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+++....+.+.+.+|..++.+...
T Consensus 55 ~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~ 134 (257)
T 3plz_A 55 LSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 134 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhh
Confidence 4557889999999999999999 8999999999999999999999999999999998765688999999998877654
Q ss_pred hcCh--HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHH
Q psy12692 114 LLGV--PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGK 144 (187)
Q Consensus 114 ~~~~--~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~ 144 (187)
..|. .++++.+++++.+|++|++|+ +.||++
T Consensus 135 ~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~ 214 (257)
T 3plz_A 135 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ 214 (257)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 5555 678899999999999999998 799999
Q ss_pred HHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCCC
Q psy12692 145 LMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187 (187)
Q Consensus 145 Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~~ 187 (187)
||+.+|++|+++.+++|++++++++|.+|+++|+.||++++|+
T Consensus 215 LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k~~ 257 (257)
T 3plz_A 215 LLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA 257 (257)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC---
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999985
No 2
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.94 E-value=2.1e-27 Score=191.39 Aligned_cols=142 Identities=13% Similarity=0.239 Sum_probs=131.8
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.++.+++|| +|+|.+++.+||++|||+||.|++++++|+|+.+. .+.+.+++|..+++.+. ..|+
T Consensus 54 ~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~--~~~l~~~~~~~~~~~~~-~~~~ 130 (257)
T 3v3e_B 54 VQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPG--EGKLIFCSGLVLHRLQC-ARGF 130 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGG--GTEEECTTSBEEEHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCC--CCeeEeCCCccccHHHH-Hhhh
Confidence 4567899999999999999 99999999999999999999999999999999986 68899999999887764 4467
Q ss_pred HHHHHHHHHHHHHHhccCCCc------------------------------------------------cchHHHHHHhC
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN------------------------------------------------CDKFGKLMSIL 149 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~------------------------------------------------~~r~~~Lll~l 149 (187)
+++++.+++++.+|++|++|+ +.||++||+++
T Consensus 131 ~~~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfsd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~L 210 (257)
T 3v3e_B 131 GDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKL 210 (257)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHH
Confidence 789999999999999999998 67999999999
Q ss_pred hhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy12692 150 PELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 150 p~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~ 184 (187)
|++|+++++++|+++++|+.|.+|+++|+.||+.+
T Consensus 211 p~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf~~ 245 (257)
T 3v3e_B 211 PELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFMD 245 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHh
Confidence 99999999999999999999999999999999864
No 3
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.94 E-value=3.3e-26 Score=182.39 Aligned_cols=162 Identities=21% Similarity=0.371 Sum_probs=142.9
Q ss_pred HHHHHHHhCCCC-----cCCCC-----HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDV-----RGILN-----RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQR 90 (187)
Q Consensus 23 ~Lkai~l~~pd~-----~~l~~-----~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~ 90 (187)
++..++-++|.. ++.++ ..+++++.++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+
T Consensus 8 ~i~~ll~~e~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s 87 (240)
T 3oll_A 8 LVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 87 (240)
T ss_dssp HHHHHHHHCCCCCCCBCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355777777742 22222 4679999999999999999 89999999999999999999999999999999
Q ss_pred hhcCCCCcEEeeCCcccchhhhh-hcChHHHHHHHHHHHHHHhccCCCc-------------------------------
Q psy12692 91 MHNALPDETTLHNGQKFDLLSLG-LLGVPTLRDRFTQVTHKLSELKFPN------------------------------- 138 (187)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------- 138 (187)
.+. .+.+.+++|..++++... ..|++++++.+++++.+|++|++|+
T Consensus 88 ~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~ 165 (240)
T 3oll_A 88 IDH--PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRK 165 (240)
T ss_dssp TTS--TTEEEEETBEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHH
T ss_pred cCC--CCeeEecCCcccchhhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHH
Confidence 986 588999999988876543 5788899999999999999999998
Q ss_pred --------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 --------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 --------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+++|++|+++++++|++++++++|.+|+++|+.||+++++
T Consensus 166 v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 239 (240)
T 3oll_A 166 LAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 239 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 469999999999999999999999999999999999999999999875
No 4
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.94 E-value=6.6e-26 Score=181.15 Aligned_cols=164 Identities=15% Similarity=0.247 Sum_probs=146.2
Q ss_pred HHHHHHHHhCCCCcC------CC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHH
Q psy12692 22 ICVKFLLLLNPDVRG------IL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMH 88 (187)
Q Consensus 22 ~~Lkai~l~~pd~~~------l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~ 88 (187)
.++.+++.++|+.-+ .+ ....+++..++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|+
T Consensus 9 ~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~ 88 (243)
T 3ltx_A 9 TILQALNKAALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAF 88 (243)
T ss_dssp HHHHHHHTTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcchhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888876432 11 23678999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc------------------------------
Q psy12692 89 QRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------ 138 (187)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------ 138 (187)
|+++.. .+.+.+.+|..++++.....|++++++.+++++.+|++|++|+
T Consensus 89 ~s~~~~-~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~ 167 (243)
T 3ltx_A 89 RSIEHG-GKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQ 167 (243)
T ss_dssp HTTTTT-TSEEEEETTEEEEHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHH
T ss_pred HhccCC-CCeEEecCCcccchhhhcccCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 999863 4568899999988888777888999999999999999999998
Q ss_pred -----------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 -----------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 -----------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+++|++|+++.+++|++++.+++|.+|+++|+.||+++++
T Consensus 168 ~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 232 (243)
T 3ltx_A 168 SLLDAIVDTAQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQD 232 (243)
T ss_dssp HHHHHHHHHHHHHSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhCcc
Confidence 789999999999999999999999999999999999999999999875
No 5
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.94 E-value=2.2e-26 Score=183.91 Aligned_cols=150 Identities=59% Similarity=0.935 Sum_probs=139.2
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhh
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGL 114 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (187)
......++++.++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+.+...++.+.+.+|..++.+....
T Consensus 45 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~ 124 (243)
T 2iz2_A 45 VDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGL 124 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhh
Confidence 4567889999999999999999 89999999999999999999999999999999986556778889998888877777
Q ss_pred cChHHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHH
Q psy12692 115 LGVPTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMS 147 (187)
Q Consensus 115 ~~~~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll 147 (187)
.|+.++++.+++++.+|++|++|+ +.||++||+
T Consensus 125 ~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~ 204 (243)
T 2iz2_A 125 LGVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVN 204 (243)
T ss_dssp SSTTSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHH
Confidence 777778889999999999999998 689999999
Q ss_pred hChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 148 ILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 148 ~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
.+|++|+++++++|+++++++.|.+|+++|+.||++++|
T Consensus 205 ~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 243 (243)
T 2iz2_A 205 ILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKR 243 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999986
No 6
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.94 E-value=1.3e-25 Score=179.44 Aligned_cols=162 Identities=24% Similarity=0.422 Sum_probs=146.5
Q ss_pred HHHHHHHhCCCCc------CCC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDVR------GIL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89 (187)
Q Consensus 23 ~Lkai~l~~pd~~------~l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~ 89 (187)
++.++..++|+.. ... ....+++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+|
T Consensus 22 ~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~r 101 (244)
T 2e2r_A 22 IVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 101 (244)
T ss_dssp HHHHHHHTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678888888632 111 24678999999999999999 8999999999999999999999999999999
Q ss_pred HhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc-------------------------------
Q psy12692 90 RMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------- 138 (187)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------- 138 (187)
+.+. .+.+.+++|..++++.....|+.++++.+++++.+|++|++|+
T Consensus 102 s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~ 179 (244)
T 2e2r_A 102 SLSF--EDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDV 179 (244)
T ss_dssp TTTS--SSCEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHH
T ss_pred hccc--CCeEEecCCEeecHHHhhhccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 9986 5778999999888887777888999999999999999999998
Q ss_pred ----------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 ----------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 ----------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+++|++|+++++++|+++++++.|.+|+++|+.||++++.
T Consensus 180 ~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 243 (244)
T 2e2r_A 180 LHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 243 (244)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTSCC
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCcC
Confidence 689999999999999999999999999999999999999999999875
No 7
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.94 E-value=6.3e-26 Score=181.83 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=144.9
Q ss_pred HHHHHHHHhCCCCc-----------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHH
Q psy12692 22 ICVKFLLLLNPDVR-----------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMH 88 (187)
Q Consensus 22 ~~Lkai~l~~pd~~-----------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~ 88 (187)
.++.++.-++|+.- .....+.+++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+
T Consensus 21 ~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~ 100 (248)
T 3k6p_A 21 ALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQ 100 (248)
T ss_dssp HHHHHHHHHSCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888531 22345779999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc------------------------------
Q psy12692 89 QRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------ 138 (187)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------ 138 (187)
|+.+. .+.+.+++|..++++.....|+.++++.+++++.+|++|++|+
T Consensus 101 ~s~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~ 178 (248)
T 3k6p_A 101 RSLPL--QDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLRE 178 (248)
T ss_dssp HHTTS--SSCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHH
T ss_pred HccCC--CCeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 99987 4889999999999887777888889999999999999999998
Q ss_pred ---------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 139 ---------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 139 ---------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
+.||++||+++|++|+++++++|++++++++|.+|+++|+.||++++
T Consensus 179 ~~~~aL~~y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~k 246 (248)
T 3k6p_A 179 ALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAM 246 (248)
T ss_dssp HHHHHHHHHHHTC----CCCCCH-HHHHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHhcc
Confidence 36999999999999999999999999999999999999999999975
No 8
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.93 E-value=1.9e-25 Score=178.66 Aligned_cols=151 Identities=31% Similarity=0.497 Sum_probs=136.0
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhh-
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG- 113 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 113 (187)
....+.+++..++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|+|+.+....+.+.+.+|..++.+...
T Consensus 44 ~~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~ 123 (246)
T 1ymt_A 44 PAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAV 123 (246)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhh
Confidence 3457889999999999999999 8999999999999999999999999999999998766788999999988876643
Q ss_pred hcCh--HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHH
Q psy12692 114 LLGV--PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGK 144 (187)
Q Consensus 114 ~~~~--~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~ 144 (187)
..|. .++++.+++++.+|++|++|+ +.||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 203 (246)
T 1ymt_A 124 QAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQ 203 (246)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 3454 478889999999999999998 689999
Q ss_pred HHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCCC
Q psy12692 145 LMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187 (187)
Q Consensus 145 Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~~ 187 (187)
|++++|++|+++++++|+++++++.|.+|+++|+.||++++|+
T Consensus 204 LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~~ 246 (246)
T 1ymt_A 204 LLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQT 246 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC---
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCccC
Confidence 9999999999999999999999999999999999999999875
No 9
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.93 E-value=6.1e-26 Score=180.49 Aligned_cols=142 Identities=18% Similarity=0.307 Sum_probs=134.0
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
.+++++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+|+.+. .+.+.+++|..++++.....|+
T Consensus 46 ~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~g~ 123 (236)
T 1fcy_A 46 WDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGF 123 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEECTTCBEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccC--CCeEEeCCCceecHHHHHHcCc
Confidence 4689999999999999999 99999999999999999999999999999999874 6889999999998887777788
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+.+++.+|++|++|+ +.||++|++++|
T Consensus 124 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~ 203 (236)
T 1fcy_A 124 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKIT 203 (236)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhH
Confidence 888999999999999999998 789999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLH 183 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~ 183 (187)
++|+++++++|+++++++.|++|+++|+.||++
T Consensus 204 ~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 204 DLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCCCCccHHHHHHhC
Confidence 999999999999999999999999999999985
No 10
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=188.75 Aligned_cols=151 Identities=34% Similarity=0.569 Sum_probs=127.1
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhh-
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLG- 113 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 113 (187)
......++++.++.+..+++|+ .+.|.+|+.+||+.|||++|.|+++++.|+|++.....+.+++.+|..++.+...
T Consensus 150 ~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~ 229 (352)
T 3tx7_B 150 LSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 229 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHH
Confidence 4567889999999999999999 8999999999999999999999999999999998765678889999998877654
Q ss_pred hcCh--HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHH
Q psy12692 114 LLGV--PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGK 144 (187)
Q Consensus 114 ~~~~--~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~ 144 (187)
..|. .++++.+++++.+|++|++|+ +.||++
T Consensus 230 ~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~RF~k 309 (352)
T 3tx7_B 230 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ 309 (352)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4555 678899999999999999998 689999
Q ss_pred HHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCCC
Q psy12692 145 LMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187 (187)
Q Consensus 145 Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~~ 187 (187)
||+++|++|+++.+++|++++++++|.+|+++|+.||++++|+
T Consensus 310 LLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~akr~ 352 (352)
T 3tx7_B 310 LLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999885
No 11
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.93 E-value=3.2e-25 Score=179.93 Aligned_cols=178 Identities=20% Similarity=0.317 Sum_probs=145.9
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCc-----CCC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHH
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVR-----GIL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMK 72 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~-----~l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~ 72 (187)
....+......++.++ ++..|+-+.|+.. +.. ....++++.++.+..+++|+ .|.|.+++.+||++
T Consensus 18 ~~~~~~~~~~~~~~~~--~i~~ll~ae~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~ 95 (271)
T 1l2j_A 18 GSHMRELLLDALSPEQ--LVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVR 95 (271)
T ss_dssp ---------CTTSHHH--HHHHHHHHCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CcccccccCCCCChhH--HHHHHHHcCCccccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHH
Confidence 3344455566677766 4567777776432 111 12568999999999999999 89999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhh-hhcChHHHHHHHHHHHHHHhccCCCc-------------
Q psy12692 73 LLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLGVPTLRDRFTQVTHKLSELKFPN------------- 138 (187)
Q Consensus 73 LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~L~ld~------------- 138 (187)
|||++|.|+++++.|+|+.+. .+.+.+++|..++++.. +..|+.++++.+++++.+|++|++|+
T Consensus 96 LLk~~w~el~iL~~a~rs~~~--~~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn 173 (271)
T 1l2j_A 96 LLESCWMEVLMMGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLN 173 (271)
T ss_dssp HHHTTHHHHHHHHHHHHTSSS--TTEECSSSSCCEETGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CCeeeecCCccccchhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 999999999999999999986 57889999988877654 35688899999999999999999998
Q ss_pred --------------------------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCCh
Q psy12692 139 --------------------------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPT 174 (187)
Q Consensus 139 --------------------------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~ 174 (187)
+.||++||+++|++|+++++.+|+++++++.|.+|+
T Consensus 174 pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~ 253 (271)
T 1l2j_A 174 SSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPV 253 (271)
T ss_dssp C----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCH
T ss_pred CCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCh
Confidence 358999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCC
Q psy12692 175 QTLLMEMLHAKR 186 (187)
Q Consensus 175 ~~ll~eml~~~~ 186 (187)
++|+.||+++++
T Consensus 254 ~~Ll~Eml~~~~ 265 (271)
T 1l2j_A 254 YDLLLEMLNAHV 265 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCc
Confidence 999999998764
No 12
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.93 E-value=9.5e-25 Score=174.81 Aligned_cols=167 Identities=19% Similarity=0.388 Sum_probs=145.1
Q ss_pred cChhhHHHHHHHHHhCCCCc-----------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHH
Q psy12692 16 FDISDYICVKFLLLLNPDVR-----------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDML 82 (187)
Q Consensus 16 ld~~E~~~Lkai~l~~pd~~-----------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~ 82 (187)
+..+++ +.++.-++|+.- .....+.+++++++.+..+++|+ .|.|.+++.+||+.||+++|.|++
T Consensus 4 ~~~~~~--~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~ 81 (248)
T 1xpc_A 4 LTADQM--VSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEIL 81 (248)
T ss_dssp SCHHHH--HHHHHHTCCCCCCCCSCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHH--HHHHHHcCCCccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHH
Confidence 334443 456777777531 11224679999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEeeCCcccchhhh-hhcChHHHHHHHHHHHHHHhccCCCc-----------------------
Q psy12692 83 VLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLGVPTLRDRFTQVTHKLSELKFPN----------------------- 138 (187)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~L~ld~----------------------- 138 (187)
+++.|+|+.+. .+.+.|++|..++++.. ...|+.++++.+++++.+|++|++|+
T Consensus 82 ~L~~a~~s~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~ 159 (248)
T 1xpc_A 82 MIGLVWRSMEH--PGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSST 159 (248)
T ss_dssp HHHHHHHHTTS--TTEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCC
T ss_pred HHHHHHHhccc--cCceeecCCceeCccchhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCccccccccc
Confidence 99999999986 58899999988887653 45788889999999999999999998
Q ss_pred -----------------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy12692 139 -----------------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLH 183 (187)
Q Consensus 139 -----------------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~ 183 (187)
+.||++||+++|++|+++++++|+++++++.|.+|+++|+.||++
T Consensus 160 ~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~ 239 (248)
T 1xpc_A 160 LKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLD 239 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 369999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy12692 184 AKR 186 (187)
Q Consensus 184 ~~~ 186 (187)
+++
T Consensus 240 ~~~ 242 (248)
T 1xpc_A 240 AHR 242 (248)
T ss_dssp CCS
T ss_pred CCc
Confidence 876
No 13
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.93 E-value=2.5e-25 Score=180.12 Aligned_cols=145 Identities=18% Similarity=0.306 Sum_probs=134.3
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+|+.+. .+.+.+.+|..++++.....|+
T Consensus 70 ~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~--~~~l~~~~g~~~~~~~~~~~g~ 147 (266)
T 3kmr_A 70 WDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGF 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEECTTSBEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCeEEecCCcccchHHHhhcch
Confidence 5779999999999999999 89999999999999999999999999999999874 6889999999998888777788
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++.+.+.+++.+|++|++|+ +.||++||+++|
T Consensus 148 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp 227 (266)
T 3kmr_A 148 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKIT 227 (266)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhH
Confidence 888899999999999999998 689999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
++|+++++++|++++++++|++|+++|+.||++++.
T Consensus 228 ~Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~~~ 263 (266)
T 3kmr_A 228 DLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCC
Confidence 999999999999999999999999999999999864
No 14
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.92 E-value=1.3e-25 Score=182.02 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=120.6
Q ss_pred CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCc--EEeeCCcccchhh
Q psy12692 36 GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDE--TTLHNGQKFDLLS 111 (187)
Q Consensus 36 ~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 111 (187)
.+.+.+.+++++++.++.+++|+ +|.|.+|+.+||++|||++|.|++++++|+|+++...... ..+.+|...+...
T Consensus 45 ~l~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~ 124 (268)
T 3f5c_B 45 TLKDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQ 124 (268)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC---------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhccccc
Confidence 45788999999999999999999 8999999999999999999999999999999988632211 1111121111111
Q ss_pred ---------------------hhhcC-hHHHHHHHHHHHHHHhccCCCc-------------------------------
Q psy12692 112 ---------------------LGLLG-VPTLRDRFTQVTHKLSELKFPN------------------------------- 138 (187)
Q Consensus 112 ---------------------~~~~~-~~~~~~~l~~~~~~l~~L~ld~------------------------------- 138 (187)
....+ ..++++.+++++.+|++|++|+
T Consensus 125 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~ 204 (268)
T 3f5c_B 125 ETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWR 204 (268)
T ss_dssp ------------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Confidence 11112 2367789999999999999998
Q ss_pred ----------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 139 ----------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 139 ----------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
+.||++||+++|++|+++++++|++++++++|.+|+++|+.||++++
T Consensus 205 ~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a~ 267 (268)
T 3f5c_B 205 TQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCAK 267 (268)
T ss_dssp HHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhCc
Confidence 78999999999999999999999999999999999999999999975
No 15
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.92 E-value=6.4e-25 Score=180.74 Aligned_cols=145 Identities=18% Similarity=0.313 Sum_probs=136.7
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.+..+++|+ .|.|.+|+.+||+.||+++|.|+++++.|+|+.+. .+.+.|++|..++++.....|+
T Consensus 73 ~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~--~~~l~~~~g~~~~~~~~~~~g~ 150 (303)
T 1xdk_B 73 WDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPE--QDTMTFSDGLTLNRTQMHNAGF 150 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTCBEEEHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhccc--CCeEEecCCceecHHHHhhcCc
Confidence 4679999999999999999 89999999999999999999999999999999875 6889999999998888777888
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++||+++|
T Consensus 151 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~ 230 (303)
T 1xdk_B 151 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKIT 230 (303)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 888999999999999999998 689999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
++|+++++++|++++.++.|.+++++|+.||+++++
T Consensus 231 ~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 266 (303)
T 1xdk_B 231 DLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 266 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCC
Confidence 999999999999999999999999999999998875
No 16
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=176.48 Aligned_cols=169 Identities=20% Similarity=0.385 Sum_probs=146.2
Q ss_pred cccChhhHHHHHHHHHhCCCCcC------CC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHH
Q psy12692 14 LKFDISDYICVKFLLLLNPDVRG------IL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSD 80 (187)
Q Consensus 14 l~ld~~E~~~Lkai~l~~pd~~~------l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~e 80 (187)
..+..+++ +.++.-++|+... .. -...+++..++.+..+++|+ .|.|.+++.+||+.||+++|.|
T Consensus 11 ~~~~~~~~--i~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~e 88 (298)
T 2ocf_A 11 LSLTADQM--VSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 88 (298)
T ss_dssp TTCCHHHH--HHHHHHSCCCCBCCCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH--HHHHHhcCCCcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHH
Confidence 34444444 5677888886321 11 12568999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEeeCCcccchhhh-hhcChHHHHHHHHHHHHHHhccCCCc---------------------
Q psy12692 81 MLVLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLGVPTLRDRFTQVTHKLSELKFPN--------------------- 138 (187)
Q Consensus 81 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~L~ld~--------------------- 138 (187)
+++++.|+|+.+. .+.+.|++|..++++.. ...|+.++++.+++++.+|++|++|+
T Consensus 89 l~lL~~a~rs~~~--~~~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~ 166 (298)
T 2ocf_A 89 ILMIGLVWRSMEH--PGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLS 166 (298)
T ss_dssp HHHHHHHHHTTTS--TTEEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC---
T ss_pred HHHHHHHHHhccc--CCceeecCCceechhhhhhhhhHHHHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCcccccc
Confidence 9999999999986 58899999998887664 45788899999999999999999998
Q ss_pred -------------------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHH
Q psy12692 139 -------------------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181 (187)
Q Consensus 139 -------------------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~em 181 (187)
+.||++||+++|++|+++.+++|++++++++|.+|+++|+.||
T Consensus 167 ~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Em 246 (298)
T 2ocf_A 167 STLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEM 246 (298)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3599999999999999999999999999999999999999999
Q ss_pred HhcCC
Q psy12692 182 LHAKR 186 (187)
Q Consensus 182 l~~~~ 186 (187)
+++++
T Consensus 247 l~~~~ 251 (298)
T 2ocf_A 247 LDAHR 251 (298)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 99865
No 17
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.92 E-value=1.3e-24 Score=176.11 Aligned_cols=144 Identities=21% Similarity=0.418 Sum_probs=132.7
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhh-hhcC
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL-GLLG 116 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 116 (187)
...++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+|+.+. .+.+.|++|..++++.. +..|
T Consensus 33 ~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~--~~~l~~~~g~~~~~~~~~~~~~ 110 (268)
T 1yye_A 33 MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEG 110 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTEEEEETTEEEEGGGGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCceEecCCcccChhhHhhhcc
Confidence 3568999999999999999 89999999999999999999999999999999986 58899999988877653 3578
Q ss_pred hHHHHHHHHHHHHHHhccCCCc---------------------------------------------------------c
Q psy12692 117 VPTLRDRFTQVTHKLSELKFPN---------------------------------------------------------C 139 (187)
Q Consensus 117 ~~~~~~~l~~~~~~l~~L~ld~---------------------------------------------------------~ 139 (187)
+.++++.+++++.+|++|++|+ +
T Consensus 111 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~ 190 (268)
T 1yye_A 111 ILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQS 190 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 8899999999999999999998 3
Q ss_pred chHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 140 DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 140 ~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
.||++||+++|++|+++.+.+|+++++++.|.+|+++|+.||++++
T Consensus 191 ~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 236 (268)
T 1yye_A 191 MRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 236 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999999999999999875
No 18
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.92 E-value=2.1e-24 Score=174.31 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=133.8
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcC--CCCc--------------EEe
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNA--LPDE--------------TTL 101 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~--~~~~--------------~~~ 101 (187)
.+++++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+|+.+.. ..+. +.+
T Consensus 44 ~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (264)
T 1g2n_A 44 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCL 123 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccceee
Confidence 4678999999999999999 899999999999999999999999999999999861 1333 889
Q ss_pred eCCcccchhhhhhcChHHHH-HHHHHHHHHHhccCCCc------------------------------------------
Q psy12692 102 HNGQKFDLLSLGLLGVPTLR-DRFTQVTHKLSELKFPN------------------------------------------ 138 (187)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~L~ld~------------------------------------------ 138 (187)
.+|..++++.....|+++++ +.+++++.+|++|++|+
T Consensus 124 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~ 203 (264)
T 1g2n_A 124 MPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRR 203 (264)
T ss_dssp ETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887778888887 57899999999999998
Q ss_pred -----cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 -----CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 -----~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+.+|++|+++.+++|+++++++.|.+|+++|+.||+.++.
T Consensus 204 ~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 256 (264)
T 1g2n_A 204 SRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNHA 256 (264)
T ss_dssp HSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCCC
T ss_pred hCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCCC
Confidence 689999999999999999999999999999999999999999998764
No 19
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.92 E-value=4.6e-25 Score=178.60 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=136.0
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+++.+. .+.+.+.+|..++++.....|+
T Consensus 72 ~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~~~ 149 (267)
T 3ilz_A 72 FSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE--SDTLTLSGEMAVKREQLKNGGL 149 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTT--TTBEEETTTEEECHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCC--CCEEEecCCeeecHHHHhccCH
Confidence 5778999999999999999 89999999999999999999999999999999875 6889999999999888877888
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++||+++|
T Consensus 150 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~Lp 229 (267)
T 3ilz_A 150 GVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKLLMKVT 229 (267)
T ss_dssp THHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhH
Confidence 899999999999999999998 789999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCCh-hhHHHHHHhcCC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPT-QTLLMEMLHAKR 186 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~-~~ll~eml~~~~ 186 (187)
++|+++++++|+++++++.|++++ ++|+.||+++++
T Consensus 230 ~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~~~~ 266 (267)
T 3ilz_A 230 DLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFEDQE 266 (267)
T ss_dssp HHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhcCCC
Confidence 999999999999999999999998 999999999875
No 20
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.92 E-value=1.2e-24 Score=174.13 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=131.0
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...+++...+.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+|+.+. .+.+.+++|..+++++.. .++
T Consensus 49 ~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~--~~~l~~~~g~~~~~~~~~-~~~ 125 (244)
T 1pdu_A 49 VQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARID--DTKLIFCNGTVLHRTQCL-RSF 125 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEECTTSBEEEHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCceEeeCCeeecHHHHH-hHH
Confidence 4678999999999999999 89999999999999999999999999999999763 688999999988876542 256
Q ss_pred HHHHHHHHHHHHHHhccCCCc------------------------------------------------cchHHHHHHhC
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN------------------------------------------------CDKFGKLMSIL 149 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~------------------------------------------------~~r~~~Lll~l 149 (187)
+++++.+++++.+|++|++|+ +.||++|++++
T Consensus 126 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L 205 (244)
T 1pdu_A 126 GEWLNDIMEFSRSLHNLEIDISAFACLCALTLITERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKL 205 (244)
T ss_dssp TTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 688889999999999999998 47999999999
Q ss_pred hhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 150 PELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 150 p~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
|++|+++++.+|++++.++.|.+|+++|+.||+.++
T Consensus 206 ~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 206 PELRSLSVQGLQRIFYLKLEDLVPAPALIENMFVTT 241 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHhCC
Confidence 999999999999999999999999999999999875
No 21
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.91 E-value=6.4e-24 Score=169.03 Aligned_cols=162 Identities=26% Similarity=0.435 Sum_probs=139.4
Q ss_pred HHHHHHHhCCCCcC-------------CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDVRG-------------ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHM 87 (187)
Q Consensus 23 ~Lkai~l~~pd~~~-------------l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~ 87 (187)
.+.+....+|.... ......+++..++.+...++|+ .|.|..++.+||+.|||++|.|+++++.+
T Consensus 13 ~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a 92 (240)
T 2p1t_A 13 ILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFS 92 (240)
T ss_dssp HHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46676666664321 1123579999999999999999 89999999999999999999999999999
Q ss_pred HHHhhcCCCCcEEeeCCcccchhhhhhcChHHHHHH-HHHHHHHHhccCCCc----------------------------
Q psy12692 88 HQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELKFPN---------------------------- 138 (187)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~L~ld~---------------------------- 138 (187)
+|+.+. .+.+.+++|..++++.....+++.+.+. +.+++.+|++|++|+
T Consensus 93 ~rs~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~ 170 (240)
T 2p1t_A 93 HRSIAV--KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEAL 170 (240)
T ss_dssp HHTTTS--SSEEECTTSCEEEHHHHHTTTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHH
T ss_pred HhhccC--CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 999886 5678889998888877777788877765 689999999999998
Q ss_pred -------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 -------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 -------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++|++.+|.+|+++.+.+|++++++++|.+|+++|+.||+++++
T Consensus 171 q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~~~ 237 (240)
T 2p1t_A 171 REKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 237 (240)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcCCC
Confidence 689999999999999999999999999999999999999999999875
No 22
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.91 E-value=5.9e-24 Score=171.97 Aligned_cols=144 Identities=15% Similarity=0.247 Sum_probs=134.0
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..++++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+|+.+. .+.+++++|..++++.....|+
T Consensus 70 ~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~--~~~l~~~~g~~~~~~~~~~~g~ 147 (266)
T 2r40_D 70 FRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAA--TDSVLFANNQAYTRDNYRKAGM 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTSCEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEecCCceecHHHHhhcCH
Confidence 5678999999999999999 99999999999999999999999999999998764 6889999999999888888899
Q ss_pred HHHHHHHHHHHHHHhccCCCc-------------------------------------------------cchHHHHHHh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-------------------------------------------------CDKFGKLMSI 148 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-------------------------------------------------~~r~~~Lll~ 148 (187)
+++++.+++++.+|++|++|+ +.||++||++
T Consensus 148 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~nd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~ 227 (266)
T 2r40_D 148 AYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGI 227 (266)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHhhheeecCCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Confidence 999999999999999999998 4799999999
Q ss_pred ChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 149 LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 149 lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+|++|+++++++|++++.++.| +++++|+.||+++.+
T Consensus 228 L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~~ 264 (266)
T 2r40_D 228 LTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIWDVAD 264 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHhCCCC
Confidence 9999999999999999999999 599999999998764
No 23
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=173.35 Aligned_cols=150 Identities=13% Similarity=0.194 Sum_probs=124.6
Q ss_pred cCCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcc----cc
Q psy12692 35 RGILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQK----FD 108 (187)
Q Consensus 35 ~~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~----~~ 108 (187)
+...+.+.+++.+++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+|+.+... +.+++..|.. ++
T Consensus 31 p~~~~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~-~~~l~~~~~~~~~~~~ 109 (249)
T 3p0u_A 31 PEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL-STILAAIVNHLQNSIQ 109 (249)
T ss_dssp CCCSCSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCC-CCCCCC-CC---CC--
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCc-chhhcccccccccccc
Confidence 344567899999999999999999 8999999999999999999999999999999987532 3333333322 11
Q ss_pred hhh---hhhcChHHHHHHHHHHHHHHhccCCCc-----------------------------------------------
Q psy12692 109 LLS---LGLLGVPTLRDRFTQVTHKLSELKFPN----------------------------------------------- 138 (187)
Q Consensus 109 ~~~---~~~~~~~~~~~~l~~~~~~l~~L~ld~----------------------------------------------- 138 (187)
.+. ....++.+.+..+++++.+|++|++|+
T Consensus 110 ~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 189 (249)
T 3p0u_A 110 EDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSED 189 (249)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 111 233455677788999999999999998
Q ss_pred cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 139 CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 139 ~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
+.||++||+.+|++|+++++++|+++|++++|.+|+++|+.||++++
T Consensus 190 ~~Rf~~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~~ 236 (249)
T 3p0u_A 190 TYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKME 236 (249)
T ss_dssp STHHHHHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999875
No 24
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.91 E-value=7.7e-25 Score=173.99 Aligned_cols=162 Identities=23% Similarity=0.408 Sum_probs=140.6
Q ss_pred HHHHHHHhCCCCcC--------CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhh
Q psy12692 23 CVKFLLLLNPDVRG--------ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH 92 (187)
Q Consensus 23 ~Lkai~l~~pd~~~--------l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~ 92 (187)
++.|.....|.... ......+++..++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|+|+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~ 93 (235)
T 2nxx_A 14 IIEAEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ 93 (235)
T ss_dssp HHHHHHHTCCCCCCCBCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhcCCCccccccccCccccHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 56676666664221 1245779999999999999999 8999999999999999999999999999999998
Q ss_pred cCCCCcEEeeCCcccchhhhhhcChHHHHHH-HHHHHHHHhccCCCc---------------------------------
Q psy12692 93 NALPDETTLHNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELKFPN--------------------------------- 138 (187)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~L~ld~--------------------------------- 138 (187)
. .+.+.+.+|..++++.....|++++.+. +++++.+|++|++|+
T Consensus 94 ~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~ 171 (235)
T 2nxx_A 94 A--QDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIY 171 (235)
T ss_dssp S--SSSEECSSSCEECSSSCSSSSCSSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHH
T ss_pred C--CCceEecCCcccccchhhhhchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 6 5788999999988777666666666654 689999999999998
Q ss_pred --------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 --------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 --------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++|++.+|++|+++++++|++++.+++|.+|+++|+.||+++++
T Consensus 172 ~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 233 (235)
T 2nxx_A 172 GVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGTT 233 (235)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC--
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 789999999999999999999999999999999999999999999876
No 25
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.90 E-value=1.4e-23 Score=168.03 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=133.8
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|+++.+ ..+.+++++|..++++..+..|+
T Consensus 54 ~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~--~~~~~~~~~g~~~~~~~~~~~~~ 131 (248)
T 2nxx_E 54 FRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDV--QTDSILFVNNQPYSRDSYNLAGM 131 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEET--TTTEEECTTSCEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcC--CCCeEEecCCceecHHHHHhcch
Confidence 4668899999999999999 9999999999999999999999999999999876 36889999999998888788888
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++|++.+|
T Consensus 132 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~~L~ 211 (248)
T 2nxx_E 132 GETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFSERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLSVLT 211 (248)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 999999999999999999998 579999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
++|+++++++|++++.++.| +++++|+.||+++++
T Consensus 212 ~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~~ 246 (248)
T 2nxx_E 212 ELRTLGNQNSEMCFSLKLKN-KKLPPFLAEIWDVDL 246 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCccHHHHHHhcCcC
Confidence 99999999999999999987 599999999998876
No 26
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.90 E-value=9.1e-24 Score=172.03 Aligned_cols=146 Identities=27% Similarity=0.476 Sum_probs=135.3
Q ss_pred CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcC
Q psy12692 39 NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG 116 (187)
Q Consensus 39 ~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (187)
....+++++++.+..+++|+ .|.|..++.+||++||+++|.|+++++.|+|+.+. .+.+.+.+|..++++.....+
T Consensus 84 ~~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~--~~~~~~~~g~~~~~~~~~~~~ 161 (282)
T 1lbd_A 84 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV--KDGILLATGLHVHRNSAHSAG 161 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGS--SSEEECTTSCEEEHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccC--CCceEecCCcccccchhhhcc
Confidence 45789999999999999999 99999999999999999999999999999999986 577888999988888777778
Q ss_pred hHHHHHH-HHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHh
Q psy12692 117 VPTLRDR-FTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSI 148 (187)
Q Consensus 117 ~~~~~~~-l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~ 148 (187)
+.++.+. +++++.+|++|++|. +.||++||+.
T Consensus 162 ~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~ 241 (282)
T 1lbd_A 162 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLR 241 (282)
T ss_dssp THHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 8877765 589999999999998 7899999999
Q ss_pred ChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 149 LPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 149 lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+|.+|+++.+.+|++++.+++|.+|+++++.||+++++
T Consensus 242 L~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~~ 279 (282)
T 1lbd_A 242 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 279 (282)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999875
No 27
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.90 E-value=1.2e-23 Score=168.13 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=129.9
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+++.+. .+.+++ +|..++++.....|+
T Consensus 52 ~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~~~~-~g~~~~~~~~~~~~~ 128 (244)
T 1nq7_A 52 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL--NNTVLF-EGKYGGMQMFKALGS 128 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETT--TTEEEE-TTEEEEGGGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCEEeE-CCEEecHHHHhhcCh
Confidence 4667889999999999999 89999999999999999999999999999998764 688888 999888888778889
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ + ||++|++++|
T Consensus 129 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L~ 207 (244)
T 1nq7_A 129 DDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKIP 207 (244)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHH
Confidence 999999999999999999998 5 9999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCC----ChhhHHHHHHh
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGA----PTQTLLMEMLH 183 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~----~~~~ll~eml~ 183 (187)
++|+++++++|++++.++.|+. |+++|+.||+.
T Consensus 208 ~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 208 TITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 9999999999999999999975 89999999984
No 28
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.90 E-value=2.3e-23 Score=168.80 Aligned_cols=142 Identities=14% Similarity=0.249 Sum_probs=130.2
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++..+.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+.+. .+.+.+++|..++.++. ..|+
T Consensus 76 ~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~--~~~l~~~~g~~~~~~~~-~~~~ 152 (271)
T 1ovl_A 76 IQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV--EGKLIFCNGVVLHRLQC-VRGF 152 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTT--TTEEECTTSBEEEHHHH-TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEeeCCeeecHHHH-HhhH
Confidence 4567899999999999999 89999999999999999999999999999999986 57889999998887653 4577
Q ss_pred HHHHHHHHHHHHHHhccCCCc------------------------------------------------cchHHHHHHhC
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN------------------------------------------------CDKFGKLMSIL 149 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~------------------------------------------------~~r~~~Lll~l 149 (187)
+++++.+++++.+|++|++|+ +.||++||+.+
T Consensus 153 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~~~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~L 232 (271)
T 1ovl_A 153 GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKL 232 (271)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 788999999999999999998 56999999999
Q ss_pred hhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy12692 150 PELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 150 p~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~ 184 (187)
|++|+++++++|++++.++.|.+|+++++.||+..
T Consensus 233 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~~ 267 (271)
T 1ovl_A 233 PELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFLD 267 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999998863
No 29
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=166.02 Aligned_cols=163 Identities=23% Similarity=0.369 Sum_probs=127.8
Q ss_pred HHHHHHHhCCCCc-----------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDVR-----------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89 (187)
Q Consensus 23 ~Lkai~l~~pd~~-----------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~ 89 (187)
.+.++.-++|+.. .....+++++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|+|
T Consensus 11 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~ 90 (244)
T 3cjw_A 11 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQC 90 (244)
T ss_dssp HHHHHHHTCSSCC-------------CCCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCCCcccCCCccccHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766531 11234679999999999999999 8999999999999999999999999999999
Q ss_pred HhhcCCCCcEEeeCCcccchh-hhhhcChHHHHHHHHHHHHHHhccCCCc------------------------------
Q psy12692 90 RMHNALPDETTLHNGQKFDLL-SLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------ 138 (187)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------ 138 (187)
+.+.. .+.+++.+|...... .....++.+.+..+++++.+|++|++|+
T Consensus 91 s~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~ 169 (244)
T 3cjw_A 91 SMPLH-VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQE 169 (244)
T ss_dssp TCCCS-CCC-----------------CCCSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHH
T ss_pred hcccc-ccccccccccccCccchhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 98863 344555555443211 1223445566778899999999999998
Q ss_pred -----------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 -----------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 -----------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+++|++|+++++++|++++.++.|.+|+++|+.||++++.
T Consensus 170 ~~~~aL~~y~~~~~~~~~~Rf~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 234 (244)
T 3cjw_A 170 KSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 234 (244)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHTTHHHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHhHHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999999999999999875
No 30
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.90 E-value=3.2e-23 Score=171.11 Aligned_cols=143 Identities=16% Similarity=0.289 Sum_probs=133.5
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.+..+++|+ .|.|.+|+.+||++||+++|.|+++++.|+|+.+. .+.++|++|..++++.....|+
T Consensus 118 ~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~--~~~l~~~~g~~~~~~~~~~~g~ 195 (310)
T 1z5x_E 118 FRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAE--TDSILFATNQPYTRESYTVAGM 195 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT--TTEEECTTSCEECHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccC--CCeEEeCCCccccHHHHHhcch
Confidence 5678999999999999999 99999999999999999999999999999999774 6889999999998888788899
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++||+++|
T Consensus 196 ~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLLl~Lp 275 (310)
T 1z5x_E 196 GDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFSERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLLSVLT 275 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999999999999999999998 579999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
++|+++++++|++++.++.|. ++++|+.||++..
T Consensus 276 ~LR~l~~~~~e~l~~~~~~~~-~~~~Ll~Eml~~~ 309 (310)
T 1z5x_E 276 ELRTLGNMNSETCFSLKLKNR-KVPSFLEEIWDVV 309 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHcCC
Confidence 999999999999999999875 9999999999864
No 31
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.90 E-value=6.5e-23 Score=166.68 Aligned_cols=147 Identities=20% Similarity=0.369 Sum_probs=129.3
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCC---------------------
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALP--------------------- 96 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~--------------------- 96 (187)
..++++..++.+..+++|+ .|.|.+++.+||+.|||++|.|+++++.|||+++....
T Consensus 49 ~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~~ 128 (279)
T 1hg4_A 49 VSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSP 128 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCcccccccc
Confidence 5679999999999999999 89999999999999999999999999999999876322
Q ss_pred ----CcEEeeCCcccchhhhhhcChHHHHHH-HHHHHHHHhccCCCc---------------------------------
Q psy12692 97 ----DETTLHNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELKFPN--------------------------------- 138 (187)
Q Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~L~ld~--------------------------------- 138 (187)
+.+.+++|..+++......|++.+.+. +++++.+|++|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~ 208 (279)
T 1hg4_A 129 GLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVY 208 (279)
T ss_dssp --CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHH
T ss_pred ccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 115666666666666566788777664 589999999999998
Q ss_pred --------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 139 --------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 139 --------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.||++||+.+|++|+++.+.+|++++++++|.+|+++|+.||+.+++
T Consensus 209 ~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 270 (279)
T 1hg4_A 209 ACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPP 270 (279)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999999999999999875
No 32
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.89 E-value=9.9e-24 Score=182.72 Aligned_cols=144 Identities=28% Similarity=0.485 Sum_probs=130.5
Q ss_pred HHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcChH
Q psy12692 41 THVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118 (187)
Q Consensus 41 ~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (187)
..+++..++.+..+++|+ .+.|.+|+.+||++|||++|.|++++++++|+.+. .+.+++.+|..++++.....++.
T Consensus 271 ~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~--~~~~ll~~g~~i~~~~~~~~~~~ 348 (467)
T 3dzy_A 271 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV--KDGILLATGLHVHRNSAHSAGVG 348 (467)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSS--TTBCCCSSSCCCBTHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccC--CCceEecCCceechhhhhhhcch
Confidence 457899999999999999 89999999999999999999999999999999875 57788899999998888888888
Q ss_pred HHHHHH-HHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 119 TLRDRF-TQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 119 ~~~~~l-~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
++.+.+ ++++.+|++|++|+ +.||++||++||
T Consensus 349 ~~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp 428 (467)
T 3dzy_A 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 428 (467)
T ss_dssp HHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 887765 59999999999998 789999999999
Q ss_pred hhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 151 ELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+||+++.+++|++++++++|.+|+++|+.|||++++
T Consensus 429 ~LRsi~~~~~E~l~~~kl~g~v~i~~Ll~EMl~a~~ 464 (467)
T 3dzy_A 429 ALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 464 (467)
T ss_dssp HHHHHHHHHHHTTTTTSTTSCCCCCSHHHHCC----
T ss_pred HHHHHHHHHHHHHHHhhccCCccHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999875
No 33
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.89 E-value=3.9e-23 Score=167.50 Aligned_cols=143 Identities=12% Similarity=0.148 Sum_probs=127.1
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+|+.+. .+.+++ +|..++.+.....|+
T Consensus 67 ~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~l~-~g~~~~~~~~~~~~~ 143 (270)
T 1n83_A 67 WQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQ--NNTVYF-DGKYASPDVFKSLGC 143 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETT--TTEEEE-TTEEECGGGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEe-CCccccHHHHHhcCH
Confidence 4568899999999999999 99999999999999999999999999999997764 567777 566666666667788
Q ss_pred HHHHHHHHHHHHHHhccCCCc----------------------------------------------cchHHHHHHhChh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN----------------------------------------------CDKFGKLMSILPE 151 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~----------------------------------------------~~r~~~Lll~lp~ 151 (187)
+++++.+++++.+|++|++|+ +.||++||+++|+
T Consensus 144 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~Rf~~LL~~L~~ 223 (270)
T 1n83_A 144 EDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVST 223 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 899999999999999999998 6899999999999
Q ss_pred hHhhhHHHHHHHHHHhhcCC----CChhhHHHHHHhcC
Q psy12692 152 LHEIASRGEEHLYHKHCNGG----APTQTLLMEMLHAK 185 (187)
Q Consensus 152 lr~ls~~~~e~l~~~~~~g~----~~~~~ll~eml~~~ 185 (187)
+|+++++++|++++.++.|+ +|+++|+.||+.++
T Consensus 224 Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 224 LRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCCcCHHHHHHhCCC
Confidence 99999999999999999987 58999999999875
No 34
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.89 E-value=2.3e-23 Score=167.27 Aligned_cols=144 Identities=14% Similarity=0.204 Sum_probs=129.1
Q ss_pred CCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeC-Ccccchhhhhh
Q psy12692 38 LNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHN-GQKFDLLSLGL 114 (187)
Q Consensus 38 ~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (187)
....++++..++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+++.+. .+.+++.+ |..+..+....
T Consensus 56 ~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~ 133 (254)
T 3b0t_A 56 SMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMD--DMSWTCGNQDYKYRVSDVTK 133 (254)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETT--TTEEECSSGGGEECHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccC--CCeEEecCCCeeeeHHHHHH
Confidence 347889999999999999999 99999999999999999999999999999987663 57777775 66677766656
Q ss_pred cChH-HHHHHHHHHHHHHhccCCCc-------------------------------------------------cchHHH
Q psy12692 115 LGVP-TLRDRFTQVTHKLSELKFPN-------------------------------------------------CDKFGK 144 (187)
Q Consensus 115 ~~~~-~~~~~l~~~~~~l~~L~ld~-------------------------------------------------~~r~~~ 144 (187)
.|++ ++++.+++++.+|++|++|+ +.||++
T Consensus 134 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~ 213 (254)
T 3b0t_A 134 AGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAK 213 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHH
Confidence 6776 88899999999999999998 479999
Q ss_pred HHHhChhhHhhhHHHHHHHHHHhh--cCCCChhhHHHHHHh
Q psy12692 145 LMSILPELHEIASRGEEHLYHKHC--NGGAPTQTLLMEMLH 183 (187)
Q Consensus 145 Lll~lp~lr~ls~~~~e~l~~~~~--~g~~~~~~ll~eml~ 183 (187)
||+++|++|+++++++|++++.++ .|.+|+++|+.||++
T Consensus 214 LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 214 MIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFG 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCCChHHHHhcC
Confidence 999999999999999999999999 677899999999984
No 35
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.89 E-value=4.9e-23 Score=167.20 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=119.3
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchh-hhhhcC
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL-SLGLLG 116 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 116 (187)
........+..+..+|+|+ +|+|.+|+.+||++|||++|.|++++++++++.+. ...+.++++...... .....+
T Consensus 78 ~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (273)
T 3vi8_A 78 FHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD--GMLVAYGNGFITREFLKSLRKP 155 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETT--EEEETTTTEEEEHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeeeeCCCccchHHHHHhhhh
Confidence 3557788899999999999 99999999999999999999999999999987652 222233333322222 233456
Q ss_pred hHHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhC
Q psy12692 117 VPTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSIL 149 (187)
Q Consensus 117 ~~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~l 149 (187)
++++++.+++++.+|++|++|+ +.||++||+++
T Consensus 156 ~~~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~L 235 (273)
T 3vi8_A 156 FCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKM 235 (273)
T ss_dssp THHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 7899999999999999999998 78999999999
Q ss_pred hhhHhhhHHHHHHHHH-HhhcCCCChhhHHHHHHhc
Q psy12692 150 PELHEIASRGEEHLYH-KHCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 150 p~lr~ls~~~~e~l~~-~~~~g~~~~~~ll~eml~~ 184 (187)
|++|+++++++|+++. ++..|.+|+++|+.||+..
T Consensus 236 p~LR~l~~~~~e~l~~~k~~~~~~~~~~Ll~Emf~d 271 (273)
T 3vi8_A 236 ADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRD 271 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCccHHHHHHHHh
Confidence 9999999999999985 5568999999999999974
No 36
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.89 E-value=2.6e-23 Score=166.57 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=126.7
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..+++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+++.+. .+.+++ +|..++.+.....|+
T Consensus 58 ~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~~~-~g~~~~~~~~~~~~~ 134 (248)
T 3l0l_A 58 WERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNAD--NRTVFF-EGKYGGMELFRALGC 134 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETT--TTEEEE-TTEEECGGGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCEEEe-CCCcccHHHHhhccH
Confidence 5678999999999999999 89999999999999999999999999999987764 567777 566666666667788
Q ss_pred HHHHHHHHHHHHHHhccCCCc---------------------------------------------cchHHHHHHhChhh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN---------------------------------------------CDKFGKLMSILPEL 152 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~---------------------------------------------~~r~~~Lll~lp~l 152 (187)
+++++.+++++.+|++|++|+ +.||++||++ |++
T Consensus 135 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~rf~~LLl~-p~L 213 (248)
T 3l0l_A 135 SELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPPK-GKL 213 (248)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGSCCT-THH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHhhcc-HHH
Confidence 999999999999999999998 6899999999 999
Q ss_pred HhhhHHHHHHHHHHhhcCC----CChhhHHHHHHh
Q psy12692 153 HEIASRGEEHLYHKHCNGG----APTQTLLMEMLH 183 (187)
Q Consensus 153 r~ls~~~~e~l~~~~~~g~----~~~~~ll~eml~ 183 (187)
|+++++++|++++.|+.|+ +|+++|+.||+.
T Consensus 214 R~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 214 RSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 9999999999999999995 689999999974
No 37
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.89 E-value=9.6e-23 Score=164.37 Aligned_cols=146 Identities=13% Similarity=0.231 Sum_probs=133.1
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..++++..++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+++....+.+.+++|..++++.....|+
T Consensus 42 ~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~~ 121 (260)
T 3vhv_A 42 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAM 121 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHhhcccH
Confidence 3678999999999999999 89999999999999999999999999999999987545688999999999888777888
Q ss_pred HHHHHHHHHHHHHHhccCCCc---------------------------------------------------cchHHHHH
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN---------------------------------------------------CDKFGKLM 146 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~---------------------------------------------------~~r~~~Ll 146 (187)
+++++.+++++.+|++|++|+ +.||++|+
T Consensus 122 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~RF~~LL 201 (260)
T 3vhv_A 122 YELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLT 201 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhhHHHHHH
Confidence 999999999999999999998 27999999
Q ss_pred HhChhhHhhhHHHHHHHHHHhh---cCCCChhhHHHHHHhcC
Q psy12692 147 SILPELHEIASRGEEHLYHKHC---NGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 147 l~lp~lr~ls~~~~e~l~~~~~---~g~~~~~~ll~eml~~~ 185 (187)
+++|++|+++++.+|++||... .+.+++++|+.||+.++
T Consensus 202 ~~Lp~Lr~l~~~~~e~lff~~~~~~~~~~~~p~Ll~Ei~~~~ 243 (260)
T 3vhv_A 202 KLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 243 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHhcc
Confidence 9999999999999999997653 57889999999999753
No 38
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.89 E-value=1.7e-22 Score=163.57 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=139.9
Q ss_pred HHHHHHHhCCCCc------CCC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDVR------GIL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89 (187)
Q Consensus 23 ~Lkai~l~~pd~~------~l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~ 89 (187)
.+.++..++|+.- ... ..++++++.++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|||
T Consensus 23 ~~~~l~~~ep~~~~~~~~~~~p~~~~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~r 102 (269)
T 1t7r_A 23 FLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWR 102 (269)
T ss_dssp HHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777888631 111 24678999999999999999 8999999999999999999999999999999
Q ss_pred HhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc-------------------------------
Q psy12692 90 RMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------- 138 (187)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------- 138 (187)
+++......+.+++|..++++.....++.++++.+++++.+|++|++|+
T Consensus 103 s~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~ 182 (269)
T 1t7r_A 103 SFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRM 182 (269)
T ss_dssp HHHHHTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHH
T ss_pred hcccCCCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHH
Confidence 9886434468899999988887777788888899999999999999998
Q ss_pred --------------------cchHHHHHHhChhhHhhhHHHHHHHHHH--h-hcCCCChhhHHHHHHhcC
Q psy12692 139 --------------------CDKFGKLMSILPELHEIASRGEEHLYHK--H-CNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 139 --------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~--~-~~g~~~~~~ll~eml~~~ 185 (187)
+.||++||+.+|++|+++.+.+|+++.. + ..|.+++++|+.||+.+.
T Consensus 183 ~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~lf~~~~~~~~~~~~~~~Ll~E~~~~~ 252 (269)
T 1t7r_A 183 NYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQ 252 (269)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcChHHHHHHHHhCc
Confidence 4699999999999999999999999843 3 348899999999999764
No 39
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.89 E-value=6.1e-23 Score=168.12 Aligned_cols=148 Identities=14% Similarity=0.229 Sum_probs=132.1
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEee-CCcccchhhhh
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLH-NGQKFDLLSLG 113 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 113 (187)
......++++.++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.|+++.+. .+.+++. +|..+.+++..
T Consensus 58 ~~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~--~~~~l~~~~~~~~~~~~~~ 135 (292)
T 2o4j_A 58 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMD--DMSWDCGSQDYKYDVTDVS 135 (292)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETT--TTEEECSSGGGEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCC--CCeEEecCCCeEEcHHHHH
Confidence 4457889999999999999999 99999999999999999999999999999987653 5777777 47778777766
Q ss_pred hcChH-HHHHHHHHHHHHHhccCCCc-------------------------------------------------cchHH
Q psy12692 114 LLGVP-TLRDRFTQVTHKLSELKFPN-------------------------------------------------CDKFG 143 (187)
Q Consensus 114 ~~~~~-~~~~~l~~~~~~l~~L~ld~-------------------------------------------------~~r~~ 143 (187)
..|++ ++++.+++++.+|++|++|+ +.||+
T Consensus 136 ~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~ 215 (292)
T 2o4j_A 136 KAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYA 215 (292)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHH
Confidence 67776 88899999999999999998 57999
Q ss_pred HHHHhChhhHhhhHHHHHHHHHHhhc--CCCChhhHHHHHHhcCC
Q psy12692 144 KLMSILPELHEIASRGEEHLYHKHCN--GGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 144 ~Lll~lp~lr~ls~~~~e~l~~~~~~--g~~~~~~ll~eml~~~~ 186 (187)
+||+++|++|+++.+++|++++.++. |.+++++|+.||+.++.
T Consensus 216 ~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Eml~~~~ 260 (292)
T 2o4j_A 216 KMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHcCCc
Confidence 99999999999999999999999994 57899999999998753
No 40
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.88 E-value=2e-22 Score=164.30 Aligned_cols=143 Identities=15% Similarity=0.270 Sum_probs=130.7
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
..++++...+.+..+++|+ .|.|.+|+.+||++||+++|.|+++++.|+++.+. .+.+.+.+|..++++.....|+
T Consensus 90 ~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~--~~~~~~~~g~~~~~~~~~~~g~ 167 (283)
T 3ipq_A 90 FAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPG--SESITFLKDFSYNREDFAKAGL 167 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEEETTTEEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCeEEeCCCceecHHHHHHcCC
Confidence 3568999999999999999 89999999999999999999999999999988764 5788999999998887777777
Q ss_pred H-HHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhC
Q psy12692 118 P-TLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSIL 149 (187)
Q Consensus 118 ~-~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~l 149 (187)
+ ++++.+.+++.+|++|++|+ +.||++||+++
T Consensus 168 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L 247 (283)
T 3ipq_A 168 QVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKL 247 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 5 78899999999999999998 68999999999
Q ss_pred hhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcC
Q psy12692 150 PELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 150 p~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~ 185 (187)
|++|+++++++|+++++++.|. ++++|+.||++..
T Consensus 248 p~Lr~l~~~~~e~l~~~k~~~~-~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 248 VSLRTLSSVHSEQVFALRLQDK-KLPPLLSEIWDVH 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhhhcCCCC-CCChHHHHHhcCC
Confidence 9999999999999999999875 9999999999753
No 41
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.88 E-value=8.5e-23 Score=168.91 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=129.4
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhh
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGL 114 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (187)
.....+++++.++.+..+++|+ +|.|.+|+.+||++||+++|.|+++++.|+++.+. .+.+++++ ..++++.. .
T Consensus 119 ~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~--~~~~l~~~-~~~~~~~~-~ 194 (316)
T 1nrl_A 119 FSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAE--TGTWECGR-LSYCLEDT-A 194 (316)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETT--TTEEEETT-EEEEECCC-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCeEEECC-EeecHHHH-h
Confidence 4457889999999999999999 89999999999999999999999999999998763 56777644 66666555 5
Q ss_pred cChH-HHHHHHHHHHHHHhccCCCc-------------------------------------------------cchHHH
Q psy12692 115 LGVP-TLRDRFTQVTHKLSELKFPN-------------------------------------------------CDKFGK 144 (187)
Q Consensus 115 ~~~~-~~~~~l~~~~~~l~~L~ld~-------------------------------------------------~~r~~~ 144 (187)
.|++ ++++.+++++.+|++|++|+ +.||++
T Consensus 195 ~g~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~k 274 (316)
T 1nrl_A 195 GGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLK 274 (316)
T ss_dssp SCHHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 6777 77889999999999999998 579999
Q ss_pred HHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 145 LMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 145 Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
||+++|++|+++.+++|++++.+..|. ++++|+.||+.+++
T Consensus 275 LLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~~~~ 315 (316)
T 1nrl_A 275 IMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFGITG 315 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHcCCC
Confidence 999999999999999999999999988 99999999998864
No 42
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.88 E-value=5.3e-23 Score=164.37 Aligned_cols=140 Identities=15% Similarity=0.221 Sum_probs=124.5
Q ss_pred CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcC
Q psy12692 39 NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG 116 (187)
Q Consensus 39 ~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (187)
...++++..++.+..+++|+ .|.|.+++.+||++|||++|.|+++++.++|+.+. .+. .+.++..++++.....|
T Consensus 55 ~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~--~~~-~~~~~~~~~~~~~~~~~ 131 (246)
T 1xvp_B 55 LVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQ--TQN-FLCGPLRYTIEDGARVG 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETT--TTE-EECSSCEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccc--cCe-EeeCCeeecHHHHHHcc
Confidence 35689999999999999999 89999999999999999999999999999998764 344 45666677776666677
Q ss_pred hH-HHHHHHHHHHHHHhccCCCc-------------------------------------------------cchHHHHH
Q psy12692 117 VP-TLRDRFTQVTHKLSELKFPN-------------------------------------------------CDKFGKLM 146 (187)
Q Consensus 117 ~~-~~~~~l~~~~~~l~~L~ld~-------------------------------------------------~~r~~~Ll 146 (187)
++ ++++.+++++.+|++|++|+ +.||++|+
T Consensus 132 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL 211 (246)
T 1xvp_B 132 FQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLL 211 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Confidence 77 78889999999999999998 68999999
Q ss_pred HhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy12692 147 SILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLH 183 (187)
Q Consensus 147 l~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~ 183 (187)
+++|++|+++++++|++++. .|.+|+++|+.||++
T Consensus 212 ~~L~~Lr~i~~~~~e~l~~~--~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 212 GLLAELRSINEAYGYQIQHI--QGLSAMMPLLQEICS 246 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TTHHHHCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCccHHHHHhcC
Confidence 99999999999999999985 688999999999984
No 43
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.88 E-value=3.8e-23 Score=165.25 Aligned_cols=168 Identities=13% Similarity=0.188 Sum_probs=140.1
Q ss_pred ccccChhhHHHHHHHHHhCCCC-------c-------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHH
Q psy12692 13 ELKFDISDYICVKFLLLLNPDV-------R-------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQH 76 (187)
Q Consensus 13 ~l~ld~~E~~~Lkai~l~~pd~-------~-------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~ 76 (187)
++.++.+|...|..|+.++-.. . .-.++..++++.++.+..+++|+ +|+|.+++.+||++||++
T Consensus 2 ~~~l~~~~~~~~~~~~~a~~~~~~p~~~~~~~~~~~~~~~~p~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~ 81 (243)
T 3up3_A 2 SYQLNAAELQALDLIQEAFKGMNDPMEQGRQATSFLKNEKSPADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKG 81 (243)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTTTCCCCSSHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHccCchhhhhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 3567889999999988766321 1 12466789999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcE---EeeCCcccchhhhh--hcChHH-HHHHHHHHHHHHhc-cCCCc-----------
Q psy12692 77 SWSDMLVLDHMHQRMHNALPDET---TLHNGQKFDLLSLG--LLGVPT-LRDRFTQVTHKLSE-LKFPN----------- 138 (187)
Q Consensus 77 ~w~el~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~~l~~-L~ld~----------- 138 (187)
+|.|+++++.|+|+.+. .+.+ .+++|..++++..+ ..|+++ +++.+.+++.+|++ |++|+
T Consensus 82 ~w~Ell~L~~a~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivL 159 (243)
T 3up3_A 82 GMIEMLTVRGVRRFDSS--SGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVL 159 (243)
T ss_dssp HHHHHHHHHHHHHEETT--TTEECCTTSCTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc--CCeeeecccCCCccccHHHHhhhcccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 99999999999998875 4543 34667666665544 367877 68899999999997 99997
Q ss_pred ---------------------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHH
Q psy12692 139 ---------------------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLM 179 (187)
Q Consensus 139 ---------------------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~ 179 (187)
+.||++||+++|++|++++ .+|++|+.+ .++.++++|+.
T Consensus 160 fsp~~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~-~~e~lf~~k-~~~~~~~pLl~ 237 (243)
T 3up3_A 160 FSPRDSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLNEQLPTALRMLREISA-SSGMLFLGT-VNTSEAEPLPR 237 (243)
T ss_dssp SCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-TCTTTTTTS-CCGGGSCHHHH
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhcc-cCCCCCCcHHH
Confidence 6799999999999999999 889998876 46679999999
Q ss_pred HHHhc
Q psy12692 180 EMLHA 184 (187)
Q Consensus 180 eml~~ 184 (187)
||++.
T Consensus 238 E~f~~ 242 (243)
T 3up3_A 238 EFFKV 242 (243)
T ss_dssp TTSCC
T ss_pred HHhCC
Confidence 99864
No 44
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.88 E-value=2.7e-22 Score=161.84 Aligned_cols=162 Identities=17% Similarity=0.290 Sum_probs=137.1
Q ss_pred HHHHHHHHhCCCCc--C----CC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHH
Q psy12692 22 ICVKFLLLLNPDVR--G----IL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMH 88 (187)
Q Consensus 22 ~~Lkai~l~~pd~~--~----l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~ 88 (187)
..+.++.-++|+.- + .. ....++++.++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.|+
T Consensus 14 ~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~ 93 (261)
T 1sqn_A 14 PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGW 93 (261)
T ss_dssp HHHHHHHHHSCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 35678888888641 1 11 12478999999999999999 899999999999999999999999999999
Q ss_pred HHhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc------------------------------
Q psy12692 89 QRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------ 138 (187)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------ 138 (187)
|+.+......+.+++|..++++.....++.++++.+++++.+|++|++|+
T Consensus 94 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq 173 (261)
T 1sqn_A 94 RSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMR 173 (261)
T ss_dssp HHHHHHTTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHH
T ss_pred HhhhcCCCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHH
Confidence 99887433357899998888777666677788899999999999999998
Q ss_pred ---------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhc-----CCCChhhHHHHHHhcC
Q psy12692 139 ---------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCN-----GGAPTQTLLMEMLHAK 185 (187)
Q Consensus 139 ---------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~-----g~~~~~~ll~eml~~~ 185 (187)
+.||++|++.+|++|+++... +.+++++. |.+++++|+.||+.++
T Consensus 174 ~~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~--~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~~ 244 (261)
T 1sqn_A 174 SSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQL--HLYCLNTFIQSRALSVEFPEMMSEVIAAQ 244 (261)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHhcCCCCChHHHHHHHHhcC
Confidence 579999999999999999765 56667777 9999999999999753
No 45
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=162.73 Aligned_cols=146 Identities=13% Similarity=0.231 Sum_probs=132.4
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...+++..++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|+++....+.+.+++|..++++.....++
T Consensus 76 ~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~~~~~~ 155 (294)
T 3vhu_A 76 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAM 155 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHhhcccH
Confidence 4678999999999999999 89999999999999999999999999999999987545688999999998888777888
Q ss_pred HHHHHHHHHHHHHHhccCCCc---------------------------------------------------cchHHHHH
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN---------------------------------------------------CDKFGKLM 146 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~---------------------------------------------------~~r~~~Ll 146 (187)
+++++.+++++.+|++|++|+ +.||++||
T Consensus 156 ~~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~RF~~LL 235 (294)
T 3vhu_A 156 YELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQRFYQLT 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhHHHHHHH
Confidence 899999999999999999998 25999999
Q ss_pred HhChhhHhhhHHHHHHHHHHhh---cCCCChhhHHHHHHhcC
Q psy12692 147 SILPELHEIASRGEEHLYHKHC---NGGAPTQTLLMEMLHAK 185 (187)
Q Consensus 147 l~lp~lr~ls~~~~e~l~~~~~---~g~~~~~~ll~eml~~~ 185 (187)
+++|++|+++++.+|++||... .+.+++++|+.||+.++
T Consensus 236 ~lLp~Lr~l~~~~~e~lff~~~q~~~~~~~~p~Ll~Ei~~~~ 277 (294)
T 3vhu_A 236 KLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 277 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCHHHHHHHcCC
Confidence 9999999999999999987543 56789999999999764
No 46
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.88 E-value=4.3e-22 Score=163.81 Aligned_cols=148 Identities=13% Similarity=0.182 Sum_probs=129.1
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeC-Ccccchhhhh
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHN-GQKFDLLSLG 113 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 113 (187)
..-..+++++.++.+..+++|+ +|.|.+|+.+||++|||++|.|+++++.|+++.+ ..+.+++.+ +..+..+...
T Consensus 101 ~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~--~~~~~l~~~~~~~~~~~~~~ 178 (302)
T 2hc4_A 101 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSL--EDMSWSCGGPDFKYCINDVT 178 (302)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEET--TTTEEECSSSTTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeEEecCCCeeecHHHHH
Confidence 3445889999999999999999 8999999999999999999999999999976443 345666654 5666666665
Q ss_pred hcCh-HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHH
Q psy12692 114 LLGV-PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKL 145 (187)
Q Consensus 114 ~~~~-~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~L 145 (187)
..|+ .++++.+++++.+|++|++|+ +.||++|
T Consensus 179 ~~g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~L 258 (302)
T 2hc4_A 179 KAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAKM 258 (302)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHH
Confidence 6677 688899999999999999998 6899999
Q ss_pred HHhChhhHhhhHHHHHHHHHHhhcCC--CChhhHHHHHHhcCC
Q psy12692 146 MSILPELHEIASRGEEHLYHKHCNGG--APTQTLLMEMLHAKR 186 (187)
Q Consensus 146 ll~lp~lr~ls~~~~e~l~~~~~~g~--~~~~~ll~eml~~~~ 186 (187)
|+++|++|+++.+++|++++.++.|. +++++|+.||+.++.
T Consensus 259 Ll~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~~~~ 301 (302)
T 2hc4_A 259 IQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSEV 301 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHHHcCCC
Confidence 99999999999999999999999865 899999999998875
No 47
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.87 E-value=2.1e-21 Score=156.66 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=141.4
Q ss_pred HHHHHHHhCCCCcC------CC-----CHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHH
Q psy12692 23 CVKFLLLLNPDVRG------IL-----NRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQ 89 (187)
Q Consensus 23 ~Lkai~l~~pd~~~------l~-----~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~ 89 (187)
++.++..++|+... .. ....++++.++.+..+++|+ .|.|.+++.+||++||+++|.|+++++.|+|
T Consensus 16 ~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~r 95 (261)
T 3mnp_A 16 LVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWR 95 (261)
T ss_dssp HHHHHHHHSCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888986431 12 23668999999999999999 8999999999999999999999999999999
Q ss_pred HhhcCCCCcEEeeCCcccchhhhhhcChHHHHHHHHHHHHHHhccCCCc-------------------------------
Q psy12692 90 RMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELKFPN------------------------------- 138 (187)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~------------------------------- 138 (187)
+++......+.+++|..++++.....++.++++.+++++.+|++|++|+
T Consensus 96 s~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~ 175 (261)
T 3mnp_A 96 SYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRM 175 (261)
T ss_dssp HHHHHTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHH
T ss_pred cccCCCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHH
Confidence 9987544468899999998888878889999999999999999999998
Q ss_pred --------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhc--CCCChhhHHHHHHhc
Q psy12692 139 --------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCN--GGAPTQTLLMEMLHA 184 (187)
Q Consensus 139 --------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~--g~~~~~~ll~eml~~ 184 (187)
+.||++|++.+|++|+++.+..|++|+.+.. +.+.+++|+.||+..
T Consensus 176 ~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l~~~~~e~~f~~~~~~~~~~~~p~Ll~Ei~~~ 243 (261)
T 3mnp_A 176 TYIKELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITN 243 (261)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHhc
Confidence 3699999999999999999999999887765 567889999999875
No 48
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.87 E-value=1.1e-21 Score=155.44 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=133.6
Q ss_pred cccChhhHHHHHHHHHhCCCCc---------------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHH
Q psy12692 14 LKFDISDYICVKFLLLLNPDVR---------------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQH 76 (187)
Q Consensus 14 l~ld~~E~~~Lkai~l~~pd~~---------------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~ 76 (187)
..++++|..++..|+-+..+.. .......+++...+.+..+++|+ .|.|.+++.+||++||++
T Consensus 3 ~~l~~e~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~ 82 (232)
T 1osh_A 3 GELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKG 82 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCC---------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCChHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHH
Confidence 4567777777777776554321 11234568999999999999999 899999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcChH-HHHHHHHHHHHHHhccCCCc-----------------
Q psy12692 77 SWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP-TLRDRFTQVTHKLSELKFPN----------------- 138 (187)
Q Consensus 77 ~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~L~ld~----------------- 138 (187)
+|.|+++++.|+++.+.. ..+|..+..+.....|+. ++++.+++++.+|++|++|+
T Consensus 83 ~~~e~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~ 156 (232)
T 1osh_A 83 SAVEAMFLRSAEIFNKKL------PSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQ 156 (232)
T ss_dssp HHHHHHHHHHHHHHHHTS------CHHHHHHHHHHHHTSSCCTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCT
T ss_pred hHHHHHHHHHHHHhCCcc------CCCCceecHHHHHHcCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999876531 122334444444455664 67888999999999999998
Q ss_pred ------------------------------cchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy12692 139 ------------------------------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 139 ------------------------------~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~ 184 (187)
+.||++|++.+|++|+++.+++|.+++++. |.+|+++|+.||++.
T Consensus 157 gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~k~-~~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 157 YIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRV-NDHKFTPLLCEIWDV 231 (232)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH-TTCCCCHHHHHHHTC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHhcC
Confidence 789999999999999999999999999997 799999999999975
No 49
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.86 E-value=1.8e-21 Score=157.62 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=118.8
Q ss_pred HHHHhHHHH-HHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcc-cchhhhhh--c
Q psy12692 42 HVEEGHEQV-QKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQK-FDLLSLGL--L 115 (187)
Q Consensus 42 ~V~~l~~~~-l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~ 115 (187)
.+|+...+. ++.+++|+ .|.|.+++.+||++||+++|.|+++++.|++.. .+.+.+.+|.. ++++.... .
T Consensus 76 ~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~----~~~~~~~~g~~~~~~~~~~~~~~ 151 (269)
T 3u9q_A 76 QGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN----KDGVLISEGQGFMTREFLKSLRK 151 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEE----TTEEEETTTTEEEEHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcC----CCCeEEeCCCccccHHHHHHhhh
Confidence 456666665 77899999 999999999999999999999999999997643 36678888876 45554433 5
Q ss_pred ChHHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHh
Q psy12692 116 GVPTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSI 148 (187)
Q Consensus 116 ~~~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~ 148 (187)
+++++++.+++++.+|++|++|+ +.||++||++
T Consensus 152 ~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~ 231 (269)
T 3u9q_A 152 PFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQK 231 (269)
T ss_dssp TGGGSSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 67788889999999999999998 6899999999
Q ss_pred ChhhHhhhHHHHHHHHHH-hhcCCCChhhHHHHHHhc
Q psy12692 149 LPELHEIASRGEEHLYHK-HCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 149 lp~lr~ls~~~~e~l~~~-~~~g~~~~~~ll~eml~~ 184 (187)
+|++|+++..+++.+++. +..|.+|+++|+.||+++
T Consensus 232 Lp~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 232 MTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHhh
Confidence 999999999999999655 467999999999999974
No 50
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.86 E-value=5.4e-21 Score=151.46 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=133.3
Q ss_pred CCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhh
Q psy12692 37 ILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGL 114 (187)
Q Consensus 37 l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (187)
....+.+++..++.+...++|+ .|.|..++.+||+.||+++|.|+++++.++++.+. .+.+.+++|..++......
T Consensus 40 ~~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~--~~~~~~~~g~~~~~~~~~~ 117 (237)
T 1pzl_A 40 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF--KDVLLLGNDYIVPRHCPEL 117 (237)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTS--SSEEECTTSCEEESSCGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCceeecCCcccCccchhh
Confidence 4567889999999999999999 89999999999999999999999999999999884 6778888888877665555
Q ss_pred cChHHHHHH-HHHHHHHHhccCCCc-----------------------------------------------cchHHHHH
Q psy12692 115 LGVPTLRDR-FTQVTHKLSELKFPN-----------------------------------------------CDKFGKLM 146 (187)
Q Consensus 115 ~~~~~~~~~-l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Ll 146 (187)
.++..+... +++++.+|++|++|+ +.||++|+
T Consensus 118 ~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL 197 (237)
T 1pzl_A 118 AEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELL 197 (237)
T ss_dssp GGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 566666665 579999999999998 68999999
Q ss_pred HhChhhHhhhHHHHHHHHHHhhcCCCChhhHHHHHHhcCC
Q psy12692 147 SILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186 (187)
Q Consensus 147 l~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~eml~~~~ 186 (187)
+.+|.+|.++.+..|++++.++.|.+++++++.||+.+++
T Consensus 198 ~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~~~ 237 (237)
T 1pzl_A 198 LLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGS 237 (237)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999864
No 51
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.84 E-value=4.8e-21 Score=148.52 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=115.7
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
...+++..++.+..+++|+ .|.|.+++.+||+.||+++|.|+++++.++++.+ ..+.+.+.+|..++.+.....|+
T Consensus 22 ~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~--~~~~~~~~~g~~~~~~~~~~~~~ 99 (199)
T 3cqv_A 22 WEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDA--KERTVTFLSGKKYSVDDLHSMGA 99 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEET--TTTEEECTTSCEEEHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCC--CCCeEEecCCCeecHHHHHhcCc
Confidence 4567888889999999999 8999999999999999999999999999987644 46788999999998888777788
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++||+.+|
T Consensus 100 ~~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~ 179 (199)
T 3cqv_A 100 GDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLP 179 (199)
T ss_dssp CHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 899999999999999999998 689999999999
Q ss_pred hhHhhhHHHHHHHHHHhhc
Q psy12692 151 ELHEIASRGEEHLYHKHCN 169 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~~ 169 (187)
++|+++++++|+++++|+.
T Consensus 180 ~Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 180 DLRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp HHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998865
No 52
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.83 E-value=1.6e-20 Score=160.63 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=113.0
Q ss_pred HHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcc-cchhhhhh--cChHHHH
Q psy12692 47 HEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQK-FDLLSLGL--LGVPTLR 121 (187)
Q Consensus 47 ~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 121 (187)
....+..+++|+ +|+|.+|+.+||++||+++|.|++++++++... .+..++.+|.. +.++.... .++++++
T Consensus 231 ~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (419)
T 3dzy_D 231 SVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMN----KDGVLISEGQGFMTREFLKSLRKPFGDFM 306 (419)
T ss_dssp HHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBC----SSEEEEGGGTEEEEHHHHHSSSGGGSGGG
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCceeecCcccccHHHHHhhhhhHHHHH
Confidence 345677899999 899999999999999999999999999984432 46677776655 34444332 4567888
Q ss_pred HHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhChhhHh
Q psy12692 122 DRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILPELHE 154 (187)
Q Consensus 122 ~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp~lr~ 154 (187)
+.+++++.+|++|++|+ +.||++||++||+||+
T Consensus 307 ~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~ 386 (419)
T 3dzy_D 307 EPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQ 386 (419)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Confidence 99999999999999998 7899999999999999
Q ss_pred hhHHHHHHHHHH-hhcCCCChhhHHHHHHhc
Q psy12692 155 IASRGEEHLYHK-HCNGGAPTQTLLMEMLHA 184 (187)
Q Consensus 155 ls~~~~e~l~~~-~~~g~~~~~~ll~eml~~ 184 (187)
++..+++.++++ ...|.+++++|+.||++.
T Consensus 387 i~~~~~~~l~~~k~~~~~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 387 IVTEHVQLLQVIKKTETDMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHHHHHTTSCSCCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCCCccHHHHHHHHh
Confidence 999999999665 457899999999999975
No 53
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=148.05 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=103.3
Q ss_pred HHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHHhhHHHHHHHHHHHHhhcCCCCcEEeeCCcccchhhhhhcCh
Q psy12692 40 RTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117 (187)
Q Consensus 40 ~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (187)
.+.+++..++.+..+++|+ .|.|.+|+.+||+.||+++|.|+++++.++++.+ ..+.+.+.+|..++.+.....|+
T Consensus 67 ~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~--~~~~l~~~~g~~~~~~~~~~~~~ 144 (245)
T 3n00_A 67 WEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNV--KDQTVMFLSRTTYSLQELGAMGM 144 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCS--CC--------------CCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEecCCCeecHHHHhhccH
Confidence 4667888999999999999 9999999999999999999999999999987443 35678889999888877777888
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----------------------------------------------cchHHHHHHhCh
Q psy12692 118 PTLRDRFTQVTHKLSELKFPN-----------------------------------------------CDKFGKLMSILP 150 (187)
Q Consensus 118 ~~~~~~l~~~~~~l~~L~ld~-----------------------------------------------~~r~~~Lll~lp 150 (187)
+++++.+++++.+|++|++|+ +.||++||+++|
T Consensus 145 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LLl~Lp 224 (245)
T 3n00_A 145 GDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLLLKLP 224 (245)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhH
Confidence 999999999999999999998 789999999999
Q ss_pred hhHhhhHHHHHHHHHHhh
Q psy12692 151 ELHEIASRGEEHLYHKHC 168 (187)
Q Consensus 151 ~lr~ls~~~~e~l~~~~~ 168 (187)
++|+++++++|+++++|+
T Consensus 225 ~LR~l~~~~~E~L~~~k~ 242 (245)
T 3n00_A 225 DLRTLNNMHSEKLLSFRV 242 (245)
T ss_dssp HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988775
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.78 E-value=1.9e-19 Score=143.81 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=117.1
Q ss_pred ccccChhhHHHHHHHHHhCCCCc--------------CCCCHHHHHHhHHHHHHhHhhhh--hhcCCCcchhHHHHHHHH
Q psy12692 13 ELKFDISDYICVKFLLLLNPDVR--------------GILNRTHVEEGHEQVQKALLDYC--ITAYPQIQVDDQMKLLQH 76 (187)
Q Consensus 13 ~l~ld~~E~~~Lkai~l~~pd~~--------------~l~~~~~V~~l~~~~l~~Lv~~~--~~~f~~l~~~DQ~~LL~~ 76 (187)
++.++.+|...|..|+.++-... .-.++..++++.+..+..+++|+ +|+|.+++.+||++|||+
T Consensus 2 ~~~l~~~e~~~l~~~~~a~~~~~~p~~~~~~~~~~~~~~~~p~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~ 81 (244)
T 3gyt_A 2 SYTLSEKDLKELDSIRDSFQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKG 81 (244)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTTTSCCCCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCchhhhhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHH
Confidence 35678889998888887663210 12466789999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcEEeeCCcccc--hhh--hhhcCh-----HHHHHHHHHHHHHHhcc-------------
Q psy12692 77 SWSDMLVLDHMHQRMHNALPDETTLHNGQKFD--LLS--LGLLGV-----PTLRDRFTQVTHKLSEL------------- 134 (187)
Q Consensus 77 ~w~el~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~-----~~~~~~l~~~~~~l~~L------------- 134 (187)
+|.|+++++.|+++.+. .+.+.+++|..++ ... ....+. .++++.+.++..+++.+
T Consensus 82 ~~~ElliLr~a~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~l~~~~~E~alLkAivLf 159 (244)
T 3gyt_A 82 GMIEMLTIRGVTVFNAD--KGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLHFFNLLHSDVRKNDLAIDIIVLMVLF 159 (244)
T ss_dssp HHHHHHHHHHHHTEETT--TTEECCTTSTTCCEEGGGGGGSCTTTHHHHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccc--CCeEeecCCcccchhHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999996553 4455555442111 000 000000 01122222222222221
Q ss_pred -----------------------------------CCCccchHHHHHHhChhhHhhhHHHHHHHHHHhhcCCCChhhHHH
Q psy12692 135 -----------------------------------KFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLM 179 (187)
Q Consensus 135 -----------------------------------~ld~~~r~~~Lll~lp~lr~ls~~~~e~l~~~~~~g~~~~~~ll~ 179 (187)
+-+.+.||++||+++|++|++++.+++ +| .+..++.++++|+.
T Consensus 160 spDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~~~~-lf-~~~~~~~~~~pLl~ 237 (244)
T 3gyt_A 160 DSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVT-LF-LGAGNTTEAASLPK 237 (244)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHTTTT-TT-TTSCCCTTSCTTGG
T ss_pred hccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHH-HH-HhccCCccCCcHHH
Confidence 123368999999999999999999999 54 45566778999999
Q ss_pred HHHhcC
Q psy12692 180 EMLHAK 185 (187)
Q Consensus 180 eml~~~ 185 (187)
||++..
T Consensus 238 Eif~~~ 243 (244)
T 3gyt_A 238 EFFATN 243 (244)
T ss_dssp GTSCCC
T ss_pred HHhCcC
Confidence 998753
No 55
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.17 E-value=1.7e-11 Score=99.19 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=57.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++|+||++|+.+...|+++|++++.+|.+|+...+|+.
T Consensus 163 l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~ 224 (273)
T 3vi8_A 163 KFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDD 224 (273)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 46678899999999999999999999999999999999999999999999999997778764
No 56
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.12 E-value=9.9e-11 Score=90.21 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=56.2
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 106 i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~ 166 (199)
T 3cqv_A 106 MFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPN 166 (199)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3566788999999999999999999999999999999999999999999999999767765
No 57
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.11 E-value=4.8e-11 Score=101.95 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=57.6
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.++++|++|.+||+|||||+||+||++||.+..+|+++|++++.+|.+|+...+|+.
T Consensus 309 i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~ 370 (419)
T 3dzy_D 309 KFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 370 (419)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 46778899999999999999999999999999999999999999999999999997777764
No 58
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.09 E-value=8.7e-11 Score=94.79 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=56.5
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+|+.
T Consensus 161 ~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~ 221 (269)
T 3u9q_A 161 FEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 221 (269)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 5667889999999999999999999999999999999999999999999999997777654
No 59
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.09 E-value=7.3e-11 Score=93.26 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++|+||++|+.+...|+++|+++..+|.+|+...+|+.
T Consensus 130 i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~ 191 (236)
T 1fcy_A 130 VFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQ 191 (236)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 34567789999999999999999999999999999999999999999999999997667653
No 60
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.07 E-value=8.6e-11 Score=93.37 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=56.7
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 135 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~ 195 (244)
T 1nq7_A 135 AFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLD 195 (244)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567788999999999999999999999999999999999999999999999999777776
No 61
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.06 E-value=1e-10 Score=92.84 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=56.6
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...+|+.
T Consensus 123 i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~ 184 (243)
T 3ltx_A 123 VAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDN 184 (243)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 35567789999999999999999999999999999999999999999999999997677654
No 62
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.06 E-value=2.7e-10 Score=91.74 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=56.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...+++.
T Consensus 156 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~ 217 (267)
T 3ilz_A 156 IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNI 217 (267)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 45667889999999999999999999999999999999999999999999999997667653
No 63
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.05 E-value=1.3e-10 Score=91.57 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=55.5
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+|+
T Consensus 126 ~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~ 185 (232)
T 1osh_A 126 FSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPE 185 (232)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 456778999999999999999999999999999999999999999999999999766665
No 64
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.05 E-value=1.2e-10 Score=92.60 Aligned_cols=61 Identities=57% Similarity=1.030 Sum_probs=55.9
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.
T Consensus 135 ~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~ 195 (243)
T 2iz2_A 135 NELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSV 195 (243)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 4556789999999999999999999999999999999999999999999999997677653
No 65
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.04 E-value=1.3e-10 Score=92.29 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=52.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhh
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI 59 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~ 59 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+.
T Consensus 140 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~ 195 (246)
T 1xvp_B 140 LFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIK 195 (246)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999999999999999999999999996
No 66
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.04 E-value=1.3e-10 Score=95.25 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=56.5
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.
T Consensus 190 l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~ 251 (302)
T 2hc4_A 190 LVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGG 251 (302)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 35567789999999999999999999999999999999999999999999999997677653
No 67
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.04 E-value=1.3e-10 Score=92.37 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=56.1
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 134 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~ 194 (244)
T 2e2r_A 134 ILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHME 194 (244)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3556788999999999999999999999999999999999999999999999999766765
No 68
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.04 E-value=1.3e-10 Score=93.72 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=66.0
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCcchhHHHHHHHHhhHHHHH
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV 83 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l~~~DQ~~LL~~~w~el~~ 83 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...+++.+ ..+.+++.
T Consensus 159 l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~---------~Rf~~LL~ 229 (268)
T 3f5c_B 159 IKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQ---------IRSAELNS 229 (268)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSSCSS---------HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHCCChH---------HHHHHHHH
Confidence 356677899999999999999999999999999999999999999999999999977777542 35666666
Q ss_pred HHHHHHHh
Q psy12692 84 LDHMHQRM 91 (187)
Q Consensus 84 l~~~~~~~ 91 (187)
+--.-|++
T Consensus 230 ~Lp~LR~i 237 (268)
T 3f5c_B 230 ALFLLRFI 237 (268)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 55555544
No 69
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.04 E-value=1.3e-10 Score=92.66 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=55.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...++
T Consensus 144 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~ 203 (254)
T 3b0t_A 144 LIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHP 203 (254)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356678899999999999999999999999999999999999999999999999976676
No 70
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=92.21 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=64.5
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCcchhHHHHHHHHhhHHHHH
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLV 83 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l~~~DQ~~LL~~~w~el~~ 83 (187)
++.++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.| ..+.+++.
T Consensus 151 i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~---------~RF~~LLl 221 (245)
T 3n00_A 151 MFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPLET---------SRFTKLLL 221 (245)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCT---------THHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHH---------HHHHHHHH
Confidence 355677899999999999999999999999999999999999999999999999976776532 23555555
Q ss_pred HHHHHHHh
Q psy12692 84 LDHMHQRM 91 (187)
Q Consensus 84 l~~~~~~~ 91 (187)
+--.-|++
T Consensus 222 ~Lp~LR~l 229 (245)
T 3n00_A 222 KLPDLRTL 229 (245)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 44444443
No 71
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.04 E-value=3.7e-10 Score=90.91 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=55.9
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+.++.+++++++|.+||+|||||++|+||++|+.+..+|+++|+++..+|.+|+...+++.
T Consensus 155 ~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~ 215 (266)
T 3kmr_A 155 FAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSR 215 (266)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 4566789999999999999999999999999999999999999999999999997677653
No 72
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.03 E-value=1.4e-10 Score=92.36 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=54.9
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...++
T Consensus 141 l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~ 200 (248)
T 3l0l_A 141 IFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR 200 (248)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 356678899999999999999999999999999999999999999999999999965553
No 73
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=92.48 Aligned_cols=61 Identities=25% Similarity=0.376 Sum_probs=55.8
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...+++.
T Consensus 129 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 189 (249)
T 3p0u_A 129 QEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSED 189 (249)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3567789999999999999999999999999999999999999999999999997677653
No 74
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.03 E-value=2.5e-10 Score=92.12 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=55.4
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...++
T Consensus 150 i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~ 209 (270)
T 1n83_A 150 VFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR 209 (270)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456778899999999999999999999999999999999999999999999999965565
No 75
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.02 E-value=1.9e-10 Score=92.39 Aligned_cols=60 Identities=32% Similarity=0.505 Sum_probs=55.8
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 148 ~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~ 207 (264)
T 1g2n_A 148 SELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSS 207 (264)
T ss_dssp HHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 466788999999999999999999999999999999999999999999999999766765
No 76
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.02 E-value=1.5e-10 Score=92.04 Aligned_cols=62 Identities=31% Similarity=0.562 Sum_probs=56.3
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.
T Consensus 136 ~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 197 (246)
T 1ymt_A 136 AQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHS 197 (246)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 34567789999999999999999999999999999999999999999999999997667653
No 77
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.02 E-value=1.6e-10 Score=95.36 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=56.2
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...++
T Consensus 205 i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p 264 (316)
T 1nrl_A 205 MLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRP 264 (316)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456778999999999999999999999999999999999999999999999999977776
No 78
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.02 E-value=1.8e-10 Score=92.27 Aligned_cols=62 Identities=39% Similarity=0.599 Sum_probs=56.6
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+|+.
T Consensus 147 l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~ 208 (257)
T 3plz_A 147 AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQ 208 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34567789999999999999999999999999999999999999999999999997777653
No 79
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.02 E-value=2.1e-10 Score=91.35 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=54.3
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...++
T Consensus 134 l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~ 193 (248)
T 3k6p_A 134 LLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAG 193 (248)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355677899999999999999999999999999999999999999999999999977776
No 80
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=91.26 Aligned_cols=59 Identities=31% Similarity=0.513 Sum_probs=54.1
Q ss_pred cccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 6 PRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 6 ~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 127 ~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~ 185 (244)
T 3cjw_A 127 EQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPN 185 (244)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34567899999999999999999999999999999999999999999999999766665
No 81
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.01 E-value=2e-10 Score=90.60 Aligned_cols=79 Identities=25% Similarity=0.360 Sum_probs=65.0
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCcchhHHHHHHHHhhHHHHHH
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMKLLQHSWSDMLVL 84 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l~~~DQ~~LL~~~w~el~~l 84 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.| ..+.+++.+
T Consensus 125 ~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~---------~Rf~~LL~~ 195 (235)
T 2nxx_A 125 SELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEP---------GRFAKLLLR 195 (235)
T ss_dssp HHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCT---------THHHHHHTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChh---------hHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999976676532 236666665
Q ss_pred HHHHHHhh
Q psy12692 85 DHMHQRMH 92 (187)
Q Consensus 85 ~~~~~~~~ 92 (187)
--.-|++.
T Consensus 196 L~~Lr~~~ 203 (235)
T 2nxx_A 196 LPALRSIG 203 (235)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44445444
No 82
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.01 E-value=2e-10 Score=93.61 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=55.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...++
T Consensus 147 l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p 206 (292)
T 2o4j_A 147 LIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHP 206 (292)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356678899999999999999999999999999999999999999999999999976676
No 83
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=98.99 E-value=4.9e-10 Score=90.91 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=56.7
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
++.++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++.
T Consensus 175 l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~ 236 (283)
T 3ipq_A 175 IFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHD 236 (283)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 45667889999999999999999999999999999999999999999999999997677653
No 84
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=98.98 E-value=3.3e-10 Score=91.55 Aligned_cols=60 Identities=30% Similarity=0.475 Sum_probs=55.4
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++||||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 162 ~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~ 221 (279)
T 1hg4_A 162 SELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 221 (279)
T ss_dssp HHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 356778999999999999999999999999999999999999999999999999766765
No 85
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=98.96 E-value=3.7e-10 Score=92.52 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=55.9
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++|+||++|+.+...|+++|+++..+|.+|+...+++
T Consensus 157 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~ 217 (303)
T 1xdk_B 157 VFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPS 217 (303)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3556778999999999999999999999999999999999999999999999999666664
No 86
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=98.93 E-value=3.4e-10 Score=90.85 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=53.4
Q ss_pred cccccccccccccChhhHHHHHHHHHhCC-CCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~p-d~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++||| |++|+.+..+|+++|+++..+|.+|+...+++
T Consensus 128 l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~ 189 (260)
T 3vhv_A 128 MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNN 189 (260)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677889999999999999999999999 99999999999999999999999999666654
No 87
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=98.93 E-value=6.5e-10 Score=89.11 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=53.8
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhh--hcCCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCI--TAYPQ 64 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~--~~f~~ 64 (187)
+++++.+++++++|.+||+|||||++|| |++|+.+..+|+++|++++.+|.+|+. ..+|+
T Consensus 137 l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~ 198 (257)
T 3v3e_B 137 ILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQ 198 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSS-CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4667889999999999999999999998 889999999999999999999999983 34554
No 88
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=98.92 E-value=5.2e-10 Score=89.83 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=55.5
Q ss_pred ccccccccccccChhhHHHHHHHHHhCC-CCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~p-d~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++||| |++|+.+..+|+++|+++..+|.+|+...+++
T Consensus 131 ~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~ 191 (261)
T 3mnp_A 131 LFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGN 191 (261)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4567789999999999999999999999 99999999999999999999999999777764
No 89
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=91.61 Aligned_cols=62 Identities=39% Similarity=0.599 Sum_probs=50.4
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++++.+++++++|.+||+|||||++||||++|+.+..+|+++|+++..+|.+|+...+++.
T Consensus 242 l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~ 303 (352)
T 3tx7_B 242 AQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQ 303 (352)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34567789999999999999999999999999999999999999999999999997677653
No 90
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=98.89 E-value=1.2e-09 Score=88.48 Aligned_cols=60 Identities=30% Similarity=0.557 Sum_probs=55.1
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++|+||++|+.+..+|.++|++++.+|.+|+...+++
T Consensus 171 ~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~ 230 (282)
T 1lbd_A 171 TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 230 (282)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346778999999999999999999999999999999999999999999999999666665
No 91
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=98.88 E-value=1.3e-09 Score=86.04 Aligned_cols=60 Identities=30% Similarity=0.557 Sum_probs=55.2
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++|+||++|+.+..+|+++|+++..+|.+|+...+++
T Consensus 129 ~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~ 188 (240)
T 2p1t_A 129 TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 188 (240)
T ss_dssp HHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356778999999999999999999999999999999999999999999999999666665
No 92
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=98.88 E-value=2e-09 Score=85.57 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=64.8
Q ss_pred cccccccccc-cccChhhHHHHHHHHHhCCCCcCCCCH---HHHHHhHHHHHHhHhhhhhhcC-CCcchhHHHHHHHHhh
Q psy12692 4 YYPRQSGELE-LKFDISDYICVKFLLLLNPDVRGILNR---THVEEGHEQVQKALLDYCITAY-PQIQVDDQMKLLQHSW 78 (187)
Q Consensus 4 ~~~~~~~~~~-l~ld~~E~~~Lkai~l~~pd~~~l~~~---~~V~~l~~~~l~~Lv~~~~~~f-~~l~~~DQ~~LL~~~w 78 (187)
+++++.++++ +++|.+||+|||||++|||+ +|+.+. ..|+++|+++..+|.+|+...+ |+. ...+
T Consensus 133 l~~~~~~~~~~L~ld~~E~alLkAivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~---------~~rf 202 (243)
T 3up3_A 133 FLQFFKIFHEDIRSNDLVISMIMLIVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDA---------HQLN 202 (243)
T ss_dssp HHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGH---------HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCh---------hHHH
Confidence 3566778997 99999999999999999999 999876 8999999999999999995444 331 2457
Q ss_pred HHHHHHHHHHHHhhc
Q psy12692 79 SDMLVLDHMHQRMHN 93 (187)
Q Consensus 79 ~el~~l~~~~~~~~~ 93 (187)
.+++..-..-|++..
T Consensus 203 ~kLL~~Lp~LR~i~~ 217 (243)
T 3up3_A 203 EQLPTALRMLREISA 217 (243)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666676654
No 93
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=98.87 E-value=3.3e-09 Score=85.24 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=53.9
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f 62 (187)
+++++.+++++++|.+||+|||||++|| |++|+.+...|+++|+++..+|.+|+...+
T Consensus 154 l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~ 211 (266)
T 2r40_D 154 LLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQN 211 (266)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566788999999999999999999999 999999999999999999999999996666
No 94
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=98.86 E-value=1e-09 Score=87.99 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=52.7
Q ss_pred cccccccccccccChhhHHHHHHHHHhCC-CCcCCCCHHHHHHhHHHHHHhHhhhhhh
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCIT 60 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~p-d~~~l~~~~~V~~l~~~~l~~Lv~~~~~ 60 (187)
+++++.+++++++|.+||+|||||++||| |++|+.+..+|+++|+++..+|.+|+..
T Consensus 129 i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~ 186 (261)
T 1sqn_A 129 MWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGL 186 (261)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 34567789999999999999999999999 8999999999999999999999999953
No 95
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=89.52 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=52.0
Q ss_pred ccccccccccccChhhHHHHHHHHHhCC-CCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~p-d~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
++++.+++++++|.+||+|||||++||| |++|+.+...|+++|+++..+|.+|+...+++
T Consensus 163 ~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~ 223 (294)
T 3vhu_A 163 HQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNN 223 (294)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567789999999999999999999999 99999999999999999999999999555543
No 96
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=98.83 E-value=1.3e-09 Score=87.71 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=53.6
Q ss_pred cccccccccccccChhhHHHHHHHHHhCC-CCcCCCCHHHHHHhHHHHHHhHhhhhhhcC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAY 62 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~p-d~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f 62 (187)
+++++.+++++++|.+||+|||||++||| |++|+.+...|+++|+++..+|.+|+...+
T Consensus 137 i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~ 196 (269)
T 1t7r_A 137 MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKR 196 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35667789999999999999999999999 899999999999999999999999995443
No 97
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=98.80 E-value=1.9e-09 Score=85.71 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=53.5
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++|| |++|+.+...|+++|+++..+|.+|+...++
T Consensus 132 l~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~ 190 (244)
T 1pdu_A 132 IMEFSRSLHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAE 190 (244)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788999999999999999999998 8899999999999999999999999965554
No 98
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=98.78 E-value=4.1e-09 Score=83.80 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~ 63 (187)
+++++.+++++++|.+||+|||||++|| |++|+.+...|+++|+++..+|.+|+...++
T Consensus 138 i~~~~~~l~~L~ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~ 196 (248)
T 2nxx_E 138 LLHFCRTMYSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRK 196 (248)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3556788999999999999999999997 8999999999999999999999999966663
No 99
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=98.74 E-value=1.5e-08 Score=83.24 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=53.2
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcC
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAY 62 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f 62 (187)
+++++.+++++++|.+||+|||||++|+ |++|+.+...|+++|+++..+|.+|+...+
T Consensus 202 i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~ 259 (310)
T 1z5x_E 202 LLRFCRHMCAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRR 259 (310)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4566788999999999999999999997 999999999999999999999999996555
No 100
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=98.72 E-value=1.7e-08 Score=87.25 Aligned_cols=60 Identities=30% Similarity=0.557 Sum_probs=55.4
Q ss_pred cccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCCc
Q psy12692 6 PRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQI 65 (187)
Q Consensus 6 ~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~l 65 (187)
+++.+++++++|.+||+|||||++|+||++|+.+...|+++|++++.+|.+|+...+++.
T Consensus 357 ~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~ 416 (467)
T 3dzy_A 357 ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQ 416 (467)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 567789999999999999999999999999999999999999999999999996666653
No 101
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=98.71 E-value=4.3e-09 Score=86.04 Aligned_cols=57 Identities=18% Similarity=0.406 Sum_probs=47.6
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCC--------cCCCCHHHHHHhHHHHHHhHhhhhhhc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDV--------RGILNRTHVEEGHEQVQKALLDYCITA 61 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~--------~~l~~~~~V~~l~~~~l~~Lv~~~~~~ 61 (187)
++++.+++++++|.+||+|||||++||||+ +|+.+...|+++|+++..+|.+|+...
T Consensus 132 ~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~ 196 (298)
T 2ocf_A 132 LATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKA 196 (298)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 455678999999999999999999999998 788889999999999999999999544
No 102
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=98.70 E-value=7e-09 Score=83.49 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=47.0
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCC-------HHHHHHhHHHHHHhHhhhhhhc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILN-------RTHVEEGHEQVQKALLDYCITA 61 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~-------~~~V~~l~~~~l~~Lv~~~~~~ 61 (187)
++++.+++++++|.+||+|||||++||||++|+.+ ...|.++++++..+|.+|+...
T Consensus 119 ~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~ 182 (268)
T 1yye_A 119 LATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKS 182 (268)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567899999999999999999999999998864 6789999999999999999544
No 103
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=98.70 E-value=1e-08 Score=82.48 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=51.9
Q ss_pred cccccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhc
Q psy12692 4 YYPRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITA 61 (187)
Q Consensus 4 ~~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~ 61 (187)
+++++.+++++++|.+||+|||||++||| ++|+.+...|+++|+++..+|.+|+...
T Consensus 159 l~~~~~~l~~L~ld~~E~~lLkAivL~~~-~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 215 (271)
T 1ovl_A 159 IVEFSSNLQNMNIDISAFSCIAALAMVTE-RHGLKEPKRVEELQNKIVNCLKDHVTFN 215 (271)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSSC-CTTCSCHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667889999999999999999999996 7999999999999999999999999544
No 104
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=98.70 E-value=3e-08 Score=78.30 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=49.8
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCC-------HHHHHHhHHHHHHhHhhhhhhc
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILN-------RTHVEEGHEQVQKALLDYCITA 61 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~-------~~~V~~l~~~~l~~Lv~~~~~~ 61 (187)
++++.+++++++|.+||+|||||++||||++|+.+ .+.|.++++++..+|.+|+...
T Consensus 121 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~ 184 (240)
T 3oll_A 121 LATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKS 184 (240)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999999999999999865 4578899999999999998543
No 105
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=98.69 E-value=1.6e-08 Score=79.34 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=54.4
Q ss_pred cccccccccccChhhHHHHHHHHHhCCCCcCCCCHHHHHHhHHHHHHhHhhhhhhcCCC
Q psy12692 6 PRQSGELELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64 (187)
Q Consensus 6 ~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~~~~V~~l~~~~l~~Lv~~~~~~f~~ 64 (187)
+++.+++++++|.+||+|||||++|+||++|+.+...++++|+++..+|.+|+...+++
T Consensus 130 ~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~ 188 (237)
T 1pzl_A 130 ELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYD 188 (237)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778999999999999999999999999999999999999999999999999656654
No 106
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=98.68 E-value=2.6e-09 Score=84.86 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=50.5
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCC--------cCCCCHHHHHHhHHHHHHhHhhhhhhcC
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDV--------RGILNRTHVEEGHEQVQKALLDYCITAY 62 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~--------~~l~~~~~V~~l~~~~l~~Lv~~~~~~f 62 (187)
++++.+++++++|.+||+|||||++||||+ +|+.+...|+++|+++..+|.+|+...+
T Consensus 123 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~ 188 (248)
T 1xpc_A 123 LATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAG 188 (248)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccC
Confidence 455678999999999999999999999998 4556678899999999999999995443
No 107
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=98.67 E-value=2.5e-08 Score=79.26 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=56.4
Q ss_pred cccChhhHHHHHHHHHhCCCCcCCC---CHHHHHHhHHHHHHhHhhhhhhcC-CCcchhHHHHHHHHhhHHHHHHHHHHH
Q psy12692 14 LKFDISDYICVKFLLLLNPDVRGIL---NRTHVEEGHEQVQKALLDYCITAY-PQIQVDDQMKLLQHSWSDMLVLDHMHQ 89 (187)
Q Consensus 14 l~ld~~E~~~Lkai~l~~pd~~~l~---~~~~V~~l~~~~l~~Lv~~~~~~f-~~l~~~DQ~~LL~~~w~el~~l~~~~~ 89 (187)
++.+..||+|||||++|+||++|+. +...|+++|+++..+|.+|+...+ |+. ...|..++..-..-|
T Consensus 143 l~~~~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~---------~~rf~kLL~~Lp~LR 213 (244)
T 3gyt_A 143 VRKNDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEA---------EQRFASIPKALVALR 213 (244)
T ss_dssp HHTCHHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSH---------HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCc---------hhHHHHHHHHHHHHH
Confidence 4456779999999999999999999 789999999999999999996566 332 245666666656666
Q ss_pred Hhhc
Q psy12692 90 RMHN 93 (187)
Q Consensus 90 ~~~~ 93 (187)
++..
T Consensus 214 ~i~~ 217 (244)
T 3gyt_A 214 KVAE 217 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 108
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=98.62 E-value=1.5e-08 Score=81.63 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=45.4
Q ss_pred ccccccccccccChhhHHHHHHHHHhCCCCcCCCC-------HHHHHHhHHHHHHhHhhhhhh
Q psy12692 5 YPRQSGELELKFDISDYICVKFLLLLNPDVRGILN-------RTHVEEGHEQVQKALLDYCIT 60 (187)
Q Consensus 5 ~~~~~~~~~l~ld~~E~~~Lkai~l~~pd~~~l~~-------~~~V~~l~~~~l~~Lv~~~~~ 60 (187)
++++.+++++++|.+||+|||||++||||++|+.+ .+.|.++++++..+|.+|+..
T Consensus 147 ~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 209 (271)
T 1l2j_A 147 LATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 209 (271)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999876 357889999999999999843
No 109
>2b19_A Neuropeptide K, NPK; helix, 3 10 helix, lipid induced conformation, DPC micelles; NMR {Synthetic}
Probab=20.44 E-value=49 Score=17.07 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=10.4
Q ss_pred cchhHHHHHHHHhh
Q psy12692 65 IQVDDQMKLLQHSW 78 (187)
Q Consensus 65 l~~~DQ~~LL~~~w 78 (187)
-+++.|++||++-+
T Consensus 4 ssiekqvallkaly 17 (36)
T 2b19_A 4 SSIEKQVALLKALY 17 (36)
T ss_dssp GGGGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 35788999988643
Done!