RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12692
(187 letters)
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 111 bits (280), Expect = 7e-31
Identities = 86/176 (48%), Positives = 105/176 (59%), Gaps = 47/176 (26%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ ++VDDQMKLLQHSWSDMLVLDH+H R+HN LPDET L+NGQ F+L+SLGLLGV
Sbjct: 68 NTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGV 127
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
P L D F ++ +KL +LK
Sbjct: 128 PQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDY 187
Query: 136 ----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+ DKF L++ILPE+H +A RGE+HLY KHC G APTQTLLMEMLHAKR
Sbjct: 188 TLTCYPSVNDKFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKR 243
Score = 56.7 bits (137), Expect = 3e-10
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+LKFD+ DY+C+KFL+LLNP VRGI+NR V EGH+ VQ ALLDY +T YP
Sbjct: 143 DLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPS 194
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 99.3 bits (247), Expect = 2e-25
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 50/179 (27%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D +
Sbjct: 173 SSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAG 232
Query: 118 PTLR---DRFTQVTHKLSELK--------------------------------------- 135
TL ++ KL L+
Sbjct: 233 ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAAL 292
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 293 LDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 351
Score = 61.6 bits (149), Expect = 8e-12
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 251 SLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 302
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 96.8 bits (241), Expect = 4e-25
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 50/179 (27%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L GQ+ D +
Sbjct: 78 SSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAG 137
Query: 118 PTLR---DRFTQVTHKLSELK--------------------------------------- 135
TL ++ KL L+
Sbjct: 138 ATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAAL 197
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +KFG+L+ LPE+ I+ + EE+LY+KH NG P LL+EMLHAKR
Sbjct: 198 LDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 256
Score = 60.6 bits (147), Expect = 1e-11
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 156 SLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQ 207
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 95.6 bits (238), Expect = 1e-24
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 50/179 (27%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ +++V DQM LLQ+SWS++LVLDH+++++ D L GQ+ +L ++ +
Sbjct: 67 RCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAG 126
Query: 118 PTLRD---RFTQVTHKLSELK--------------------------------------- 135
L R ++ +L L+
Sbjct: 127 SLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAAL 186
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P+ DKF +L+ L E+ ++ + +E+LYHKH P LL+EML AK+
Sbjct: 187 LDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 245
Score = 61.0 bits (148), Expect = 7e-12
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D +++C+KFL+L + DV+ + N + V++ E+ ALLDY ++ YP
Sbjct: 145 ALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPH 196
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 93.2 bits (232), Expect = 7e-24
Identities = 21/176 (11%), Positives = 50/176 (28%), Gaps = 48/176 (27%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ Y + + DQ+ L++ W ++L+L+ + + + D S + +
Sbjct: 58 NVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEH-GGKSLAFAPDLVLDRSSWSTVEM 116
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
+ ++ V+ ++ +
Sbjct: 117 TEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDT 176
Query: 136 ----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
P+ ++ +L + + RG G LL EML A+
Sbjct: 177 AQKYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQD 232
Score = 62.8 bits (153), Expect = 2e-12
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+ + + ++ ++L+N +VR + + + + + A++D +P V
Sbjct: 132 QNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPD-NVRHVPA 190
Query: 73 LLQHSWSDMLVLDHMHQ 89
+L L+L H+ Q
Sbjct: 191 VL-------LLLTHIRQ 200
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 92.9 bits (231), Expect = 9e-24
Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 49/175 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + + + DQM LLQ +W ++L+L +++ + DE + D L G+
Sbjct: 70 HIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLS--FEDELVYADDYIMDEDQSKLAGL 127
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
L + Q+ K +K
Sbjct: 128 LDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDY 187
Query: 136 ----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ GK++ LP L + +++ +H Y+ G P L +EML AK
Sbjct: 188 EAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 242
Score = 62.0 bits (151), Expect = 3e-12
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+K + +++ +K + L N D I + V++ + + +AL DY + + K
Sbjct: 143 SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHME-DPRRAGK 201
Query: 73 LLQHSWSDMLVLDHMHQ 89
+L + L + Q
Sbjct: 202 ML-------MTLPLLRQ 211
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 92.9 bits (231), Expect = 9e-24
Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 50/178 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + ++ +DDQ+ LL+ W+++L+ H+ + + D L G S GV
Sbjct: 63 RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA--VKDGILLATGLHVHRNSAHSAGV 120
Query: 118 PTLRDR-FTQVTHKLSELK----------------------------------------- 135
+ DR T++ K+ +++
Sbjct: 121 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 180
Query: 136 -----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+P +F KL+ LP L I + EHL+ G P T LMEML A +
Sbjct: 181 YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ 238
Score = 57.1 bits (138), Expect = 2e-10
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 137 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 188
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 92.9 bits (231), Expect = 2e-23
Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 50/178 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + ++ +DDQ+ LL+ W+++L+ H+ + + D L G S GV
Sbjct: 105 RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA--VKDGILLATGLHVHRNSAHSAGV 162
Query: 118 PTLRDR-FTQVTHKLSELK----------------------------------------- 135
+ DR T++ K+ +++
Sbjct: 163 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 222
Query: 136 -----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
+P +F KL+ LP L I + EHL+ G P T LMEML A +
Sbjct: 223 YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ 280
Score = 56.3 bits (136), Expect = 4e-10
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 179 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 230
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 90.5 bits (225), Expect = 7e-23
Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 53/179 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + + + DQM +LQ W ++LVL + + L DE D G+
Sbjct: 70 SIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLP--LQDELAFAEDLVLDEEGARAAGL 127
Query: 118 PTLRDRFTQVTHKLSELKF----------------------------------------- 136
L Q+ +L L+
Sbjct: 128 GELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 187
Query: 137 ----------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+ G+L+ LP L + A + H Y G P L +EML A
Sbjct: 188 EAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAM 246
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 88.6 bits (220), Expect = 3e-22
Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 50/176 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + + DQ++LL+ W+++L+ H+ M D L G + + +GV
Sbjct: 59 LVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQ--AQDAIVLATGLTVNKSTAHAVGV 116
Query: 118 PTLRDR-FTQVTHKLSELK----------------------------------------- 135
+ DR +++ +K+ E+K
Sbjct: 117 GNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEE 176
Query: 136 -----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
PN +F KL+ LP L I + EHL+ G P T LMEML
Sbjct: 177 YTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGT 232
Score = 59.0 bits (143), Expect = 4e-11
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
E+K D ++ C++ ++L NPDVRGI + VE E++ L +Y T +P
Sbjct: 133 EMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPN 184
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 84.9 bits (210), Expect = 1e-20
Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 64/194 (32%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNAL----------------PDETTL 101
I + Q++++DQ+ L++ SW+++L+ + M P L
Sbjct: 64 DIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCL 123
Query: 102 HNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELK------------------------- 135
G S GV + DR ++++ K+ L+
Sbjct: 124 MPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNR 183
Query: 136 ---------------------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAP 173
+ +F L+ LP L I+ + EHL+ H
Sbjct: 184 QEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTS 243
Query: 174 TQTLLMEMLHAKRK 187
+ + L
Sbjct: 244 IAGYIRDALRNHAP 257
Score = 61.0 bits (148), Expect = 9e-12
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+ D ++Y+ +K ++LLNPDV+G+ NR VE E++ L +YC + +
Sbjct: 156 TLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSS-EEGRFAA 214
Query: 73 LLQHSWSDMLVLDHMHQ 89
LL L L +
Sbjct: 215 LL-------LRLPALRS 224
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 83.6 bits (207), Expect = 3e-20
Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 50/175 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I A+ ++ +DDQ+ LL+ + L+L + M D L N L +
Sbjct: 63 YIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMV--FKDVLLLGNDYIVPRHCPELAEM 120
Query: 118 PTLRDR-FTQVTHKLSELK----------------------------------------- 135
+ R ++ EL+
Sbjct: 121 SRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLED 180
Query: 136 -----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ +FG+L+ +LP L I + E + G A LL EML
Sbjct: 181 YINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLG 235
Score = 59.7 bits (145), Expect = 2e-11
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
EL+ D ++Y +K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 137 ELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYD 188
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 80.6 bits (199), Expect = 4e-19
Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 47/175 (26%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I +P +Q+ DQ+ LL+ +WS++ VL+ M + + + ++
Sbjct: 59 NIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF 118
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
F + KL L
Sbjct: 119 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEY 178
Query: 136 ----FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
+PN +FGKL+ LP L ++S E L+ G P +TL+ +ML +
Sbjct: 179 VRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSG 233
Score = 52.8 bits (127), Expect = 6e-09
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D ++Y C+K ++L D G+ + HVE E+ Q AL +Y + YP
Sbjct: 134 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPN 185
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 76.9 bits (189), Expect = 2e-17
Identities = 32/203 (15%), Positives = 63/203 (31%), Gaps = 73/203 (35%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMH-------------------------QRMH 92
+ + Q+ +DDQ+ LL+ +W ++L+ + +R
Sbjct: 69 MMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSP 128
Query: 93 NALPDETTLHNGQKFDLLSLGLLGVPTLRDR-FTQVTHKLSELK---------------- 135
P + L+ + S GV + DR ++++ K+ L
Sbjct: 129 GLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYN 188
Query: 136 ------------------------------FPNC-DKFGKLMSILPELHEIASRGEEHLY 164
P +F +L+ LP L I+ + ++HL+
Sbjct: 189 PDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLF 248
Query: 165 HKHCNGGAPTQTLLMEMLHAKRK 187
P + L +E L A
Sbjct: 249 LFRITSDRPLEELFLEQLEAPPP 271
Score = 57.7 bits (139), Expect = 2e-10
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 170 RLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 221
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 75.7 bits (186), Expect = 4e-17
Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 54/183 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + VDDQM ++Q+SW ++V + N F+ + +
Sbjct: 71 ALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRM 130
Query: 118 PTLRDRFTQVTHKLSELKFPN----CDK-------------------------------- 141
+ R ++ + L+ C K
Sbjct: 131 YSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDR 190
Query: 142 ---------------FGKLMSILPELHEIASRGEEHLYHKHCNGGA---PTQTLLMEMLH 183
F +L +L + IA + + ++ E++
Sbjct: 191 IIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIIS 250
Query: 184 AKR 186
+
Sbjct: 251 VQV 253
Score = 49.5 bits (118), Expect = 9e-08
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLN-PDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +++C+K LLL + V G+ N+ +E K L +
Sbjct: 146 WLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRR 205
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD +
Sbjct: 206 FYQLT-------KLLDSVQP 218
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 73.2 bits (180), Expect = 2e-16
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 63/174 (36%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELK +Y+CVK ++LLN + ++ T + ++ L D +
Sbjct: 129 ELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAV---------TDALVW 179
Query: 73 LLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLS 132
++ S + R
Sbjct: 180 VIAKS------------------------------------GISSQQQSMRLAN------ 197
Query: 133 ELKFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 198 ------------LLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 239
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 72.3 bits (177), Expect = 7e-16
Identities = 19/185 (10%), Positives = 47/185 (25%), Gaps = 57/185 (30%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSL----- 112
I A+ + D L++ W+++ L + T L S+
Sbjct: 56 SIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQV--MSLSTILAAIVNHLQNSIQEDKL 113
Query: 113 ---GLLGVPTLRDRFTQVTHKLSELKF--------------------------------- 136
+ V + + + +++L
Sbjct: 114 SGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEA 173
Query: 137 -------------PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ +++ LP L ++S E L+ G +++ +L
Sbjct: 174 AQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYIL 233
Query: 183 HAKRK 187
+
Sbjct: 234 KMETA 238
Score = 54.5 bits (131), Expect = 2e-09
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L D +Y +K ++L +PD G+ + + +E+ E Q L DY Y +
Sbjct: 137 KLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSE 188
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 70.7 bits (173), Expect = 3e-15
Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 53/180 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + +DDQM LLQ+SW ++V + A + + + L +
Sbjct: 65 IPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMY 124
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
++ +L L+
Sbjct: 125 DQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKA 184
Query: 137 ---------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCN--GGAPTQTLLMEMLHAK 185
N +F +L +L +H++ + + + +L E++ +
Sbjct: 185 IAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITNQ 244
Score = 49.5 bits (118), Expect = 1e-07
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVR-GILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +Y+C+K LLLL+ + G+ ++ +E K L + Q
Sbjct: 139 RLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQR 198
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD MH
Sbjct: 199 FYQLT-------KLLDSMHD 211
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 69.6 bits (170), Expect = 7e-15
Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 60/188 (31%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNG------------- 104
I + ++ + DQ++LL+ W ++L++ M + + + P +
Sbjct: 81 KIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEG 138
Query: 105 ------------QKFDLLSL-------------------GLLGVPTLRDRFTQVTHKLSE 133
+F L L L+ D ++ H L+
Sbjct: 139 ILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNA 198
Query: 134 L-------------KFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLM 179
+ + L+ +L + +++G EHL + C P LL+
Sbjct: 199 VTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLL 258
Query: 180 EMLHAKRK 187
EML+A
Sbjct: 259 EMLNAHVL 266
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 69.2 bits (169), Expect = 1e-14
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 63/174 (36%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
ELK +Y+CVK ++LLN + ++ T + ++ L D +
Sbjct: 127 ELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVT---------DALVW 177
Query: 73 LLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLS 132
++ S + R
Sbjct: 178 VIAKS------------------------------------GISSQQQSMRLAN------ 195
Query: 133 ELKFPNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
L+ +L + +++G EHL + C P LL+EML+A
Sbjct: 196 ------------LLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 237
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 67.9 bits (166), Expect = 2e-14
Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 61/187 (32%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLL-GV 117
+ + + + DQ+ LL+ +W ++L++ + + M + P + D + G+
Sbjct: 58 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEH--PGKLLFAPNLLLDRNQGKCVEGM 115
Query: 118 PTLRDRFTQVTHKLSELK-------------FPNCDKFGKLMSILPELHE---------- 154
+ D + + + N + L S L L E
Sbjct: 116 VEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDK 175
Query: 155 -----------------------------------IASRGEEHLYHKHCNGGAPTQTLLM 179
++++G EHLY C P LL+
Sbjct: 176 ITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLL 235
Query: 180 EMLHAKR 186
EML A R
Sbjct: 236 EMLDAHR 242
Score = 46.3 bits (110), Expect = 1e-06
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 13 ELKFDISDYICVKFLLLLNPDV--------RGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ +++C+K ++LLN V + + + H+ +++ L+ A
Sbjct: 131 MMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLT 190
Query: 65 IQVDDQM--KLLQHSWSDMLVLDHMHQ 89
+Q Q +L +L+L H+
Sbjct: 191 LQQQHQRLAQL-------LLILSHIRH 210
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 67.9 bits (166), Expect = 4e-14
Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 61/188 (32%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLL-G 116
+ + + + DQ+ LL+ +W ++L++ + + M + P + D + G
Sbjct: 66 RVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEH--PGKLLFAPNLLLDRNQGKCVEG 123
Query: 117 VPTLRDRFTQVTHKLSELK-------------FPNCDKFGKLMSILPELHE--------- 154
+ + D + + + N + L S L L E
Sbjct: 124 MVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLD 183
Query: 155 ------------------------------------IASRGEEHLYHKHCNGGAPTQTLL 178
++++G EHLY C P LL
Sbjct: 184 KITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLL 243
Query: 179 MEMLHAKR 186
+EML A R
Sbjct: 244 LEMLDAHR 251
Score = 51.8 bits (124), Expect = 2e-08
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 13 ELKFDISDYICVKFLLLLNPDV--------RGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ +++C+K ++LLN V + + + H+ +++ L+ A
Sbjct: 140 MMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLT 199
Query: 65 IQVDDQM--KLLQHSWSDMLVLDHMHQ 89
+Q Q +LL L+L H+
Sbjct: 200 LQQQHQRLAQLL-------LILSHIRH 219
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 66.8 bits (162), Expect = 7e-14
Identities = 26/199 (13%), Positives = 46/199 (23%), Gaps = 71/199 (35%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH------------------------N 93
+ + + +D Q+ L++ W+ +L+L+ +H
Sbjct: 69 YLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEG 128
Query: 94 ALPDETTLHNGQKFDLLSLGLLGVPTLRDRFTQVTHKLSELK------------------ 135
P E + G L K L
Sbjct: 129 PEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPD 188
Query: 136 ----------------------------FPNC-DKFGKLMSILPELHEIASRGEEHLYHK 166
+ +L S L L I S L+ +
Sbjct: 189 LPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFR 248
Query: 167 HCNGGAPTQTLLMEMLHAK 185
G +++EML AK
Sbjct: 249 PIIGAVSMDDMMLEMLCAK 267
Score = 51.0 bits (121), Expect = 3e-08
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L D +Y +K +L NPD+ G+ ++E + Q+ L ++ + Q
Sbjct: 168 SLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQ 221
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 67.4 bits (164), Expect = 1e-13
Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 50/176 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DDQ+ LL+ W+++L+ H+ + D L G S GV
Sbjct: 291 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV--KDGILLATGLHVHRNSAHSAGVG 348
Query: 119 TLRDR-FTQVTHKLSELK------------------------------------------ 135
+ DR T++ K+ +++
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAY 408
Query: 136 ----FPNCD-KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 409 CKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 464
Score = 48.6 bits (115), Expect = 3e-07
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 364 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 415
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 64.9 bits (158), Expect = 4e-13
Identities = 18/181 (9%), Positives = 51/181 (28%), Gaps = 54/181 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + + +DDQ+ L+Q+SW ++V + + + +
Sbjct: 64 LPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFY 123
Query: 119 TLRDRFTQVTHKLSE----------LKF-------------------------------- 136
+L Q+ + + +K
Sbjct: 124 SLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKA 183
Query: 137 ---------PNCDKFGKLMSILPELHEIASRGEEHLYH---KHCNGGAPTQTLLMEMLHA 184
+ +F +L +L LH++ + + + + ++ E++ A
Sbjct: 184 IGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAA 243
Query: 185 K 185
+
Sbjct: 244 Q 244
Score = 51.1 bits (122), Expect = 3e-08
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLNP-DVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
+L+ +++C+K LLLLN + G+ ++T EE + L+ + Q
Sbjct: 138 KLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQR 197
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD++H
Sbjct: 198 FYQLT-------KLLDNLHD 210
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 62.6 bits (152), Expect = 2e-12
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 54/181 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + + ++DQ+ L+Q+SW +L + + F+ + +
Sbjct: 63 LPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMY 122
Query: 119 TLRDRFTQVTHKLSELK------------------------------------------- 135
L Q++ + L+
Sbjct: 123 ELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKM 182
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQT---LLMEMLHA 184
+F +L +L +H++ S E ++ A +L+E++
Sbjct: 183 VTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISD 242
Query: 185 K 185
+
Sbjct: 243 Q 243
Score = 43.0 bits (101), Expect = 1e-05
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVR-GILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +Y +K LLLL+ + G+ ++ EE K L Q
Sbjct: 137 RLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQR 196
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD MH
Sbjct: 197 FYQLT-------KLLDSMHD 209
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 60.0 bits (145), Expect = 3e-11
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 54/181 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + + ++DQ+ L+Q+SW +L + + F+ + +
Sbjct: 97 LPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMY 156
Query: 119 TLRDRFTQVTHKLSELK------------------------------------------- 135
L Q++ + L+
Sbjct: 157 ELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKM 216
Query: 136 -------FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGA---PTQTLLMEMLHA 184
+F +L +L +H++ S E ++ A +L+E++
Sbjct: 217 VTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISD 276
Query: 185 K 185
+
Sbjct: 277 Q 277
Score = 41.5 bits (97), Expect = 6e-05
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVR-GILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +Y +K LLLL+ + G+ ++ EE K L Q
Sbjct: 171 RLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQR 230
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD MH
Sbjct: 231 FYQLT-------KLLDSMHD 243
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 59.3 bits (144), Expect = 3e-11
Identities = 21/173 (12%), Positives = 47/173 (27%), Gaps = 51/173 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + + DQ L + ++ ++ VL N + + NG L + G
Sbjct: 96 KIPGFADLPKADQDLLFESAFLELFVLRLA--YRSNPVEGKLIFCNGVVLHRLQC-VRGF 152
Query: 118 PTLRDRFTQVTHKLSELK--------------FPNC------------------------ 139
D + + L +
Sbjct: 153 GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHV 212
Query: 140 ----------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ KL+ LPEL + ++G + +++ P ++ ++
Sbjct: 213 TFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLF 265
Score = 44.3 bits (105), Expect = 6e-06
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+ DIS + C+ L ++ + G+ VEE ++ L D+ +
Sbjct: 168 NMNIDISAFSCIAALAMVT-ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLN 220
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 57.8 bits (140), Expect = 1e-10
Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ DQ LL+ ++ ++ +L + +G L G
Sbjct: 90 IPGFIELSPGDQDLLLESAFLELFILRLA--YRSKPGEGKLIFCSGLVLHRLQC-ARGFG 146
Query: 119 TLRDRFTQVTHKLSELK--------------FPNC------------------------- 139
D + L L +
Sbjct: 147 DWIDNILAFSRSLHSLGVDVPAFACLSALVLITDRHGLQDPRRVEELQNRIASCLKEHMA 206
Query: 140 ---------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+L+ LPEL + ++G + ++ P ++ ++
Sbjct: 207 AVAGDPQPASCLSRLLGKLPELRTLCTQGLQRIFCLKLEDLVPPPPIVDKIF 258
Score = 42.4 bits (100), Expect = 3e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D+ + C+ L+L+ D G+ + VEE ++ L ++
Sbjct: 161 SLGVDVPAFACLSALVLIT-DRHGLQDPRRVEELQNRIASCLKEHMAAVAGD 211
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 57.4 bits (139), Expect = 1e-10
Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 49/171 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + + + DQ+ LL+ + D+L+L + D T +G + + G
Sbjct: 91 LPGFTTLTIADQITLLKAACLDILILRIC--TRYTPEQDTMTFSDGLTLNRTQMHNAGFG 148
Query: 119 TLRDRFTQVTHKLSELK-------------FPNCD------------------------- 140
L D ++L L+ D
Sbjct: 149 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYV 208
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
F K++ + +L I+++G E + L+ EML
Sbjct: 209 RKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEML 259
Score = 49.7 bits (119), Expect = 8e-08
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D ++ + + L+ D + + V+ E + +AL Y P
Sbjct: 163 PLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPS 214
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 54.3 bits (131), Expect = 2e-09
Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I Y + +DQ L Q + ++ VL + NG L
Sbjct: 70 IPGYFDLLPEDQELLFQSASLELFVLRLA--YRARIDDTKLIFCNGTVLHRTQC-LRSFG 126
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
+ + + L L+
Sbjct: 127 EWLNDIMEFSRSLHNLEIDISAFACLCALTLITERHGLREPKKVEQLQMKIIGSLRDHVT 186
Query: 137 ------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
F +L+ LPEL ++ +G + +++ P L+ M
Sbjct: 187 YNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMF 238
Score = 43.5 bits (103), Expect = 9e-06
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ DIS + C+ L L+ + G+ VE+ ++ +L D+ +
Sbjct: 141 NLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQK 193
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 52.7 bits (127), Expect = 7e-09
Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 49/171 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG-- 116
+ + + + DQ+ LL+ + D+L+L + D T +G + + G
Sbjct: 67 LPGFTGLSIADQITLLKAACLDILMLRIC--TRYTPEQDTMTFSDGLTLNRTQMHNAGFG 124
Query: 117 --------------------------------------------VPTLRDRFTQVTHKLS 132
V L++ + +
Sbjct: 125 PLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYA 184
Query: 133 ELKFPN-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ P+ F +++ + +L I+++G E P L+ EML
Sbjct: 185 RRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREML 235
Score = 50.0 bits (120), Expect = 6e-08
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D ++ + + L+ D + V++ E + +AL Y P
Sbjct: 139 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS 190
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 51.6 bits (123), Expect = 3e-08
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD +++L+ D G+LN +E+ + + +AL +P+
Sbjct: 318 ALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPE 369
Score = 46.2 bits (109), Expect = 2e-06
Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 55/175 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF---DLLSLGLL 115
I + + ++DQ+ LL++ +++ + M+ D + GQ F + L
Sbjct: 245 IPGFVNLDLNDQVTLLKYGVHEIIYT-MLASLMN---KDGVLISEGQGFMTREFLKSLRK 300
Query: 116 GVPTLRDRFTQVTHKLSELK-------------FPNCDKFG------------------- 143
+ + K + L+ + D+ G
Sbjct: 301 PFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALE 360
Query: 144 ---------------KLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
KL+ + +L +I + + L K LL E+
Sbjct: 361 LQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 415
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 50.1 bits (120), Expect = 3e-08
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ + ++L++ D GI N VE E + +AL + +P
Sbjct: 115 ALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPN 166
Score = 45.8 bits (109), Expect = 1e-06
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 49/154 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + DQ+ LL+ ++L++ +A T +G+K+ + L +G
Sbjct: 43 IPGFRDLSQHDQVNLLKAGTFEVLMV-RFASLF-DAKERTVTFLSGKKYSVDDLHSMGAG 100
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
L + + + KL+ L+
Sbjct: 101 DLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLI 160
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYH 165
PN F KL+ LP+L + + E L
Sbjct: 161 MKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLA 194
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 50.6 bits (121), Expect = 4e-08
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L + ++L++ D G+ N VE+ E + +AL + P
Sbjct: 160 SLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPL 211
Score = 46.3 bits (110), Expect = 1e-06
Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 49/159 (30%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + DQ+ LL+ ++L++ N + + L LG +G+
Sbjct: 88 IPGFRDLSQHDQVTLLKAGTFEVLMV-RFASLF-NVKDQTVMFLSRTTYSLQELGAMGMG 145
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
L + KL+ L
Sbjct: 146 DLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALV 205
Query: 137 ----PNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNG 170
P +F KL+ LP+L + + E L +
Sbjct: 206 LKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRVDA 244
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 51.0 bits (122), Expect = 4e-08
Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 49/173 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG-- 116
+ + + + DQ+ LL+ + D+L+L + R D T +G + + G
Sbjct: 94 LPGFTGLTIADQITLLKAACLDILIL-RICTRY-TPEQDTMTFSDGLTLNRTQMHNAGFG 151
Query: 117 --------------------------------------------VPTLRDRFTQVTHKLS 132
V L++ +
Sbjct: 152 PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYI 211
Query: 133 ELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ P+ F K++ + +L I+++G E + L+ EML
Sbjct: 212 RKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLEN 264
Score = 48.6 bits (116), Expect = 2e-07
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D ++ + + L+ D + + T V++ E + +AL Y P
Sbjct: 166 PLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPS 217
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 49.5 bits (118), Expect = 1e-07
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L+ +Y+ ++ + L +PD G+L V++ EQ L Y PQ
Sbjct: 214 KLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQ 265
Score = 38.7 bits (90), Expect = 4e-04
Identities = 22/175 (12%), Positives = 51/175 (29%), Gaps = 55/175 (31%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I+ + + ++DQ+ LL+ + ++ L + + T + L
Sbjct: 142 VISYFRDLPIEDQISLLKGAAFELCQL-RFNTVFN--AETGTWECGRLSYCLEDTAGGFQ 198
Query: 118 PTLRDRFTQVTHKLSELKF----------------------------------------- 136
L + + + L +L+
Sbjct: 199 QLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSY 258
Query: 137 --------PNCDKFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
+ F K+M++L EL I ++ + L + + A L+ E+
Sbjct: 259 IECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFAT--PLMQELF 311
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 49.4 bits (118), Expect = 1e-07
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD +++L+ D G+LN +E+ + + +AL +P+
Sbjct: 169 ALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPE 220
Score = 45.1 bits (107), Expect = 3e-06
Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 55/176 (31%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF---DLLSLGL 114
I + + ++DQ+ LL++ +++ + M+ D + GQ F + L
Sbjct: 95 SIPGFVNLDLNDQVTLLKYGVHEIIYT-MLASLMN---KDGVLISEGQGFMTREFLKSLR 150
Query: 115 LGVPTLRDRFTQVTHKLSEL---------------------------------------- 134
+ + K + L
Sbjct: 151 KPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQAL 210
Query: 135 ------KFPNC-DKFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
P F KL+ + +L +I + + L K LL E+
Sbjct: 211 ELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 266
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 49.0 bits (117), Expect = 1e-07
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
EL+ + +++ + + + + D + ++ VE +AL Y +P
Sbjct: 184 ELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPH 235
Score = 42.8 bits (101), Expect = 2e-05
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + Q+ +DQ+ LL+ S ++++L +R N + T ++ G+
Sbjct: 111 LPGFLQLSREDQIALLKTSAIEVMLL-ETSRRY-NPGSESITFLKDFSYNREDFAKAGLQ 168
Query: 119 T-----------------------------------------------LRDRFTQVTHKL 131
L+ + + H
Sbjct: 169 VEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAY 228
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ P+ F +++ L L ++S E ++ LL E+
Sbjct: 229 VSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLP-PLLSEIW 279
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 49.0 bits (117), Expect = 2e-07
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+LK +++ + + LL+PD G+ + +E +++ L Y +P
Sbjct: 199 KLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPG 250
Score = 45.2 bits (107), Expect = 3e-06
Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 55/180 (30%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLL---SLGL 114
I + + +DQ+ LL+ S ++++L +Q L D + G F
Sbjct: 124 MIPGFRDLTAEDQIALLKSSAIEIIML-RSNQSFS--LEDMSWSCGGPDFKYCINDVTKA 180
Query: 115 LGVPTLRDRFTQVTHKLSEL---------------------------------------- 134
L + + L +L
Sbjct: 181 GHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVL 240
Query: 135 ------KFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ--TLLMEMLHAK 185
+ P + K++ L +L + + Q L++E+ ++
Sbjct: 241 QAYIRIQHPGGRLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSE 300
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 47.2 bits (112), Expect = 6e-07
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD ++ D G+LN H+E+ E + L + + +P
Sbjct: 166 ALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPD 217
Score = 34.9 bits (80), Expect = 0.008
Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 55/175 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF---DLLSLGLL 115
I + + ++DQ+ LL++ + + + M+ D + G F + L
Sbjct: 93 IPGFANLDLNDQVTLLKYGVYEAIFA-MLSSVMN---KDGMLVAYGNGFITREFLKSLRK 148
Query: 116 GVPTLRDRFTQVTHKLSELKFPNCD----------------------------------- 140
+ + K + L+ + D
Sbjct: 149 PFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLR 208
Query: 141 ------------KFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
F KL+ + +L ++ + + + K A LL E+
Sbjct: 209 LHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIY 263
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 46.9 bits (112), Expect = 6e-07
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
ELK +Y + +++L+PD + I +R VE+ E + L C P+
Sbjct: 134 ELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPE 185
Score = 42.3 bits (100), Expect = 2e-05
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 43/169 (25%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVL-------------------DHMHQRMHNALPDET 99
+ + + +DQ+ LL+ S + + L + + +
Sbjct: 65 LPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITP 124
Query: 100 TLHNGQKFDLLSL-------------------GLLGVPT---LRDRFTQVTHKLSELKFP 137
+ L + + L++ V KL ++ P
Sbjct: 125 MFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQP 184
Query: 138 NC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAK 185
F L+ L EL E L N T LL E+ +
Sbjct: 185 ENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFT-PLLCEIWDVQ 232
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 46.7 bits (111), Expect = 1e-06
Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 50/171 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + ++ +DQ+ LL+ S++++ R ++A D Q + S + G+
Sbjct: 139 LPGFDKLIREDQIALLKACSSEVMMFRMA--RRYDAETDSILFATNQPYTRESYTVAGMG 196
Query: 119 TLRDRFTQVTHKLSELK------------------------------------------- 135
+ + + +K
Sbjct: 197 DTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFSERPSLSEGWKVEKIQEIYIEALKAYVE 256
Query: 136 ---FPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
P F KL+S+L EL + + E + + L E+
Sbjct: 257 NRRKPYATTIFAKLLSVLTELRTLGNMNSETCFSLKLKNRKVP-SFLEEIW 306
Score = 36.7 bits (85), Expect = 0.002
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
+K D ++Y + +++ + + + VE+ E +AL Y K
Sbjct: 211 AMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAK 269
Query: 73 LLQ 75
LL
Sbjct: 270 LLS 272
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 45.6 bits (108), Expect = 2e-06
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ + +L++PD +L V++ E++ AL +
Sbjct: 144 SLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLD 195
Score = 42.9 bits (101), Expect = 2e-05
Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 49/170 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
IT + ++ +DQ+ LL+ +++++ M + + T L G+ + LG
Sbjct: 73 ITGFMELCQNDQILLLKSGCLEVVLV-RMCRAF--NPLNNTVLFEGKYGGMQMFKALGSD 129
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
L + L L+
Sbjct: 130 DLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVI 189
Query: 137 ----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ + KL++ +P + + + E L + TL +
Sbjct: 190 QKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLY 239
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 45.2 bits (107), Expect = 3e-06
Identities = 8/52 (15%), Positives = 24/52 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L +++ + + +++PD G+ + +E +++ L Y +P
Sbjct: 153 KLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPP 204
Score = 39.8 bits (93), Expect = 2e-04
Identities = 17/177 (9%), Positives = 42/177 (23%), Gaps = 55/177 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF--DLLSLGLLG 116
I + + +DQ+ LL+ S ++++L ++ T N
Sbjct: 79 IPGFRDLTSEDQIVLLKSSAIEVIML-RSNESF-TMDDMSWTCGNQDYKYRVSDVTKAGH 136
Query: 117 VPTLRDRFTQVTHKLSELKF---------------------------------------- 136
L + + L +L
Sbjct: 137 SLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQT 196
Query: 137 ---------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQT--LLMEML 182
+ + K++ L +L + + + L++E+
Sbjct: 197 YIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVF 253
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 45.0 bits (107), Expect = 3e-06
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L+ +Y+ + + L +PD G+ R +++ E++ L Y +
Sbjct: 149 KLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRR 200
Score = 38.9 bits (91), Expect = 3e-04
Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 53/173 (30%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + ++DQ+ LL+ + ++ + + + +
Sbjct: 76 DLPVFRSLPIEDQISLLKGAAVEICHI--VLNTTFCLQTQNFLCGPLRYTIEDGARVGFQ 133
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
+ L +L+
Sbjct: 134 VEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSY 193
Query: 136 ----FPNCDK---FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
+ KL+ +L EL I + H G + LL E+
Sbjct: 194 IKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQ--HIQGLSAMMPLLQEI 244
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 44.4 bits (105), Expect = 6e-06
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + ++ +DQ+ LL+ +++ L R + D TL L G+
Sbjct: 93 LPMFSELPXEDQIILLKGCCMEIMSL-RAAVRY-DPESDTLTLSGEMAVKREQLKNGGLG 150
Query: 119 TLRDRFTQVTHKLSE-----------------------LKFPNC---------------- 139
+ D ++ LS L +
Sbjct: 151 VVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYV 210
Query: 140 --------DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQT-LLMEML 182
+ KL+ + +L I + H L +E+
Sbjct: 211 NHRKHNIPHFWPKLLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVF 262
Score = 42.5 bits (100), Expect = 3e-05
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
D ++ ++ +LL++ D G+L +E+ E A Y
Sbjct: 165 AFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHN 216
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 44.2 bits (104), Expect = 7e-06
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L F + L+L+N G+ + VE+ ++ A + + +
Sbjct: 150 ALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR----QSILA 205
Query: 73 LLQ 75
L
Sbjct: 206 KLP 208
Score = 36.5 bits (84), Expect = 0.003
Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 47/168 (27%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
++ + ++ +DQ+ LL+ +++++ M + + T G+ + LG
Sbjct: 79 LSGFMELCQNDQIVLLKAGAMEVVLV-RMCRAY--NADNRTVFFEGKYGGMELFRALGCS 135
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
L +H LS L F
Sbjct: 136 ELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHL 195
Query: 137 --PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ + +L + S+ E L Q +
Sbjct: 196 CKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLY 243
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 43.3 bits (102), Expect = 1e-05
Identities = 6/52 (11%), Positives = 20/52 (38%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ + +L++ D + + +E+ +++Q AL + +
Sbjct: 159 SMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRE 210
Score = 37.1 bits (86), Expect = 0.002
Identities = 19/174 (10%), Positives = 39/174 (22%), Gaps = 53/174 (30%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DQ+ LL+ +++ + M + + T +G+ LG
Sbjct: 88 IDGFMELCQNDQIVLLKAGSLEVVFI-RMCRAF--DSQNNTVYFDGKYASPDVFKSLGCE 144
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
+ L +
Sbjct: 145 DFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVL 204
Query: 137 ----PNCDKFGKLMSILPELHEIASRGEEHLYH--KHCNGGAPTQT--LLMEML 182
KL+ + L + R E L L E+
Sbjct: 205 QKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELF 258
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 42.9 bits (101), Expect = 2e-05
Identities = 20/180 (11%), Positives = 44/180 (24%), Gaps = 53/180 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLS-LGLLGV 117
I + + DDQ+ LL+ S ++++L +Q K+D+
Sbjct: 82 IPGFRDLTSDDQIVLLKSSAIEVIML-RSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHT 140
Query: 118 PTLRDRFTQVTHKLSELK------------------------------------------ 135
L + + L +L
Sbjct: 141 LELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTY 200
Query: 136 ----FPNCDK---FGKLMSILPELHEIASRGEEHLYH--KHCNGGAPTQTLLMEMLHAKR 186
P + K++ L +L + + L++E+ +
Sbjct: 201 IRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260
Score = 42.1 bits (99), Expect = 3e-05
Identities = 9/52 (17%), Positives = 24/52 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L +++ + + +++PD G+ + VE +++ L Y +P
Sbjct: 156 KLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPP 207
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 42.4 bits (100), Expect = 2e-05
Identities = 24/215 (11%), Positives = 52/215 (24%), Gaps = 68/215 (31%)
Query: 33 DVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQV----------------DDQMKLLQH 76
D++ + +E E +Q+ DQ+ LL+
Sbjct: 49 DLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKA 108
Query: 77 SWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVPT----------------- 119
S++++L + +R +A D N Q + + G+
Sbjct: 109 CSSEVMML-RVARRY-DAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMM 166
Query: 120 ----------------------------LRDRFTQVTHKLSELKFPNC----DKFGKLMS 147
++ + + FGK++
Sbjct: 167 DNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILG 226
Query: 148 ILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
IL E+ + + L E+
Sbjct: 227 ILTEIRTLGMQNSNMCISLKLKNRKLP-PFLEEIW 260
Score = 39.7 bits (93), Expect = 2e-04
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM- 71
+ D Y + +++ + D G+ VEE L Y + +
Sbjct: 163 SMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIF 221
Query: 72 -KLLQ 75
K+L
Sbjct: 222 GKILG 226
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 41.6 bits (98), Expect = 5e-05
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 50/171 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + ++ +DQ+ LL+ S++++ M +R + D N Q + S L G+
Sbjct: 75 LPGFDKLLREDQIALLKACSSEVMMF-RMARRY-DVQTDSILFVNNQPYSRDSYNLAGMG 132
Query: 119 T---------------------------------------------LRDRFTQVTHKLSE 133
+++ + + +
Sbjct: 133 ETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFSERPALIEGWKVEKIQEIYLEALRAYVD 192
Query: 134 LKFPNCDK--FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ F KL+S+L EL + ++ E + L E+
Sbjct: 193 NRRKPKPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKNKKLP-PFLAEIW 242
Score = 37.7 bits (88), Expect = 0.001
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
++ D ++Y + +++ + + ++ VE+ E +AL Y K
Sbjct: 147 SMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAK 205
Query: 73 LLQ 75
LL
Sbjct: 206 LLS 208
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 38.7 bits (90), Expect = 4e-04
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGIL--NRTHVEEGHEQVQKALLDYCITAYPQIQVDDQ 70
+++ + + ++L +P +R + HEQ L Y + Y
Sbjct: 143 DIRSNDLVISMIMLIVLFSPRDSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQLN 202
Query: 71 MKLLQ 75
+L
Sbjct: 203 EQLPT 207
Score = 34.8 bits (80), Expect = 0.009
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 142 FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
+L + L L EI++ A L E
Sbjct: 202 NEQLPTALRMLREISASSGMLFLGTVNTSEAE--PLPREF 239
Score = 26.0 bits (57), Expect = 7.2
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVL 84
+ A+ + D + LL+ +ML +
Sbjct: 64 LPAFNDLSQDGKFALLKGGMIEMLTV 89
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 34.2 bits (78), Expect = 0.014
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 142 FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
F + L L ++A A +L E
Sbjct: 202 FASIPKALVALRKVAENAVTLFLGAGNTTEAA--SLPKEF 239
Score = 32.2 bits (73), Expect = 0.068
Identities = 7/66 (10%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGIL---NRTHVEEGHEQVQKALLDYCITAYPQIQVDD 69
+++ + + ++L + G++ ++ VE+ H + L Y + + +
Sbjct: 142 DVRKNDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQR 201
Query: 70 QMKLLQ 75
+ +
Sbjct: 202 FASIPK 207
Score = 28.0 bits (62), Expect = 1.5
Identities = 10/77 (12%), Positives = 24/77 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ A+ +I + LL+ +ML + + + +T + + L
Sbjct: 64 LGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPD 123
Query: 119 TLRDRFTQVTHKLSELK 135
+ H + L
Sbjct: 124 IKDTQKKGFLHFFNLLH 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.4
Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 48/183 (26%)
Query: 11 ELELKFDISDYICVKFLLLLNPDVRGILNRTHVEE------------GHEQVQKALLDYC 58
+ K D+ D +L ++ I+ E VQK + +
Sbjct: 32 NFDCK-DVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 59 ITAYP----QIQVDDQMKLL-------QHS--WSDMLVLDHMH---QRMHNALPDETTLH 102
Y I+ + + + Q ++D V + + + L L
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALL 145
Query: 103 NGQKFDLLSL-GLLG-------VPTLRDRFTQVTHKLSE----LKFPNCDKFGKLMSILP 150
+ + + G+LG + +V K+ L NC+ ++ +L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 151 ELH 153
+L
Sbjct: 204 KLL 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.7
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 29/101 (28%)
Query: 100 TLHNGQKFDLLSLGLLGVPT--------LRDRFTQVTHKLSELKFPNCDKFGKLMSILPE 151
TL +G L LL VPT L+++F ++ + +E F D+ + E
Sbjct: 10 TLSHGS----LEHVLL-VPTASFFIASQLQEQFNKILPEPTE-GFAADDEP----TTPAE 59
Query: 152 LHE-----IASRGEEHLYHKHCNGGAPTQTLLMEMLHAKRK 187
L ++S E G Q L + + +
Sbjct: 60 LVGKFLGYVSSLVEPS------KVGQFDQVLNLCLTEFENC 94
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 25.7 bits (57), Expect = 3.2
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 3 NYYPRQSGELELKFDISDYICV 24
+ PR ELEL+ + D + V
Sbjct: 14 RFVPRHEDELELE--VDDPLLV 33
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 26.3 bits (59), Expect = 6.1
Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 10/64 (15%)
Query: 123 RFTQVTHKLSELKFPNCDK----FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLL 178
+ + + FGK L ++ E Y G L
Sbjct: 312 IPEAPLEDVEIPEVEGLEAASYLFGK------TLFQLLKAEAEATYEALAEAGQRVYALF 365
Query: 179 MEML 182
+ +
Sbjct: 366 LPEV 369
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active
site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB:
1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A
1ujz_A 2erh_A
Length = 87
Score = 25.1 bits (55), Expect = 6.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY--CITAYP 63
ELK ISDY +F+ LL I + V LL++ IT +P
Sbjct: 2 ELKNSISDYTEAEFVQLLK----EIEKEN--VAATDDVLDVLLEHFVKITEHP 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,885,029
Number of extensions: 163042
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 181
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)