RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12692
(187 letters)
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 76.6 bits (188), Expect = 5e-18
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 50/178 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ------------- 105
+ +++VDDQMKLLQ+ WS++L+LDH+++++ + L G+
Sbjct: 65 SIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEV 124
Query: 106 -------------------KFDLLSLGLLG-----------------VPTLRDRFTQVTH 129
+FD L V ++++
Sbjct: 125 AFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALL 184
Query: 130 KLSELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+ +P +KFG+L+ LPEL I+ + E++LY+KH NG P LL+EMLHAKR
Sbjct: 185 DYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR 242
Score = 46.6 bits (110), Expect = 4e-07
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+FD +++C+KFL+L + DV+ + N VE EQV ALLDY + YPQ
Sbjct: 142 SLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQ 193
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 65.9 bits (160), Expect = 4e-14
Identities = 36/178 (20%), Positives = 54/178 (30%), Gaps = 53/178 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + + + DQM +LQ W ++LVL + + L DE D G+
Sbjct: 52 SIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLP--LQDELAFAEDLVLDEEGARAAGL 109
Query: 118 PTLRDRFTQVTHKLSELK-------------FPNCD------------------------ 140
L Q+ +L L+ N D
Sbjct: 110 GELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEY 169
Query: 141 --------------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ G+L+ LP L + A + H Y G P L +EML A
Sbjct: 170 EAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEA 227
Score = 46.2 bits (109), Expect = 4e-07
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L+ + +Y+ +K L L N D I + VE+ E + +ALL+Y ++ +
Sbjct: 125 ALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRR 184
Query: 73 LLQ 75
+
Sbjct: 185 AGR 187
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 64.7 bits (157), Expect = 9e-14
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 49/175 (28%)
Query: 57 YCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG 116
I + + + DQM LLQ +W ++L+L +++ + DE + D L G
Sbjct: 51 KHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSF--EDELVYADDYIMDEDQSKLAG 108
Query: 117 VPTLRDRFTQVTHKLSELKF---------------------------------------- 136
+ L + Q+ K +K
Sbjct: 109 LLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 168
Query: 137 -------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ + GK++ LP L + +++ +H Y+ G P L +EML A
Sbjct: 169 YEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEA 223
Score = 38.9 bits (90), Expect = 1e-04
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+K + +++ +K + L N D I + V++ + + +AL DY + +
Sbjct: 125 SMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHME 176
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 64.3 bits (156), Expect = 1e-13
Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 50/175 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + ++ +DDQ+ LL+ W+++L+ H+ + D L G S GV
Sbjct: 57 RIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV--KDGILLATGLHVHRNSAHSAGV 114
Query: 118 PT-----------------------------------------------LRDRFTQVTHK 130
LR++
Sbjct: 115 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEA 174
Query: 131 LSELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ K+P +F KL+ LP L I + EHL+ G P T LMEML A
Sbjct: 175 YCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEA 229
Score = 39.3 bits (91), Expect = 1e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+++ D ++ C++ ++L NPD +G+ N VE E+V +L YC YP+
Sbjct: 131 DMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPE 182
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 62.9 bits (152), Expect = 8e-13
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQ 175
+ R++ + L+ P +F +L+ LP L I+ + ++HL+ P +
Sbjct: 192 IEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLE 251
Query: 176 TLLMEMLHAKRK 187
L +E L A
Sbjct: 252 ELFLEQLEAPPP 263
Score = 44.7 bits (105), Expect = 2e-06
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D + C+K ++L NPD+RGI +R +E E+V L ++C +P
Sbjct: 162 RLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPG 213
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 61.6 bits (149), Expect = 1e-12
Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 49/171 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + + + DQ+ LL+ + D+L+L + D T +G + + G
Sbjct: 67 LPGFTGLSIADQITLLKAACLDILMLRICT--RYTPEQDTMTFSDGLTLNRTQMHNAGFG 124
Query: 119 TLRDRFTQVTHKLSELK-------------FPNCD------------------------- 140
L D +L L+ D
Sbjct: 125 PLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYA 184
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
F +++ + +L I+++G E P L+ EML
Sbjct: 185 RRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREML 235
Score = 42.7 bits (100), Expect = 6e-06
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D ++ + + L+ D + V++ E + +AL Y P
Sbjct: 139 PLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPS 190
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 58.9 bits (142), Expect = 1e-11
Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 18/149 (12%)
Query: 56 DYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDET--------TLHNGQKF 107
+ A + +Q K ++ +L R L N +
Sbjct: 94 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 153
Query: 108 DLLSLGLLG------VPTLRDRFTQVTHKL---SELKFPNC-DKFGKLMSILPELHEIAS 157
LS L + + D+ T L + L + +L+ IL + +++
Sbjct: 154 TFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSN 213
Query: 158 RGEEHLYHKHCNGGAPTQTLLMEMLHAKR 186
+G EHLY C P LL+EML A R
Sbjct: 214 KGMEHLYSMKCKNVVPLYDLLLEMLDAHR 242
Score = 36.2 bits (83), Expect = 0.001
Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLL-G 116
+ + + + DQ+ LL+ +W ++L++ + + M + P + D + G
Sbjct: 57 RVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEH--PGKLLFAPNLLLDRNQGKCVEG 114
Query: 117 VPTLRDRFTQVTHKLSELKFPNCDKFGKLMSIL---PELHEIASRGEEHLYHKH 167
+ + D + + + ++F L SI+ ++ S + L K
Sbjct: 115 MVEIFDMLLATSSRFRMMNL-QGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKD 167
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 58.2 bits (140), Expect = 2e-11
Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 50/173 (28%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I A+ ++ +DDQ+ LL+ + L+L + M D L N L +
Sbjct: 59 YIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF--KDVLLLGNDYIVPRHCPELAEM 116
Query: 118 PTLRDR-FTQVTHKLSELKFPNCD------------------------------------ 140
+ R ++ EL+ + +
Sbjct: 117 SRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLED 176
Query: 141 -----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+FG+L+ +LP L I + E + G A LL EML
Sbjct: 177 YINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 229
Score = 45.5 bits (107), Expect = 7e-07
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
EL+ D ++Y +K ++ +PD +G+ + ++ QVQ +L DY
Sbjct: 133 ELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYD 184
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 57.4 bits (138), Expect = 6e-11
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 64/190 (33%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMH----------------NALPDETTLH 102
I + Q++++DQ+ L++ SW+++L+ + M + P L
Sbjct: 65 IPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLM 124
Query: 103 NGQKFDLLSLGLLGVPTLRDRFTQ-VTHKLSELKF------------------------- 136
G S GV + DR ++ K+ L+
Sbjct: 125 PGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQ 184
Query: 137 ----------------------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPT 174
+F L+ LP L I+ + EHL+ H
Sbjct: 185 EVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSI 244
Query: 175 QTLLMEMLHA 184
+ + L
Sbjct: 245 AGYIRDALRN 254
Score = 43.2 bits (101), Expect = 6e-06
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D ++Y+ +K ++LLNPDV+G+ NR VE E++ L +YC +
Sbjct: 156 TLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSS 207
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 56.2 bits (135), Expect = 1e-10
Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I Y + +DQ L Q + ++ VL ++ + + NG L
Sbjct: 59 IPGYFDLLPEDQELLFQSASLELFVLRLAYRARID--DTKLIFCNGTVLHRTQC-LRSFG 115
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
+ + + L L+
Sbjct: 116 EWLNDIMEFSRSLHNLEIDISAFACLCALTLITERHGLREPKKVEQLQMKIIGSLRDHVT 175
Query: 137 ------PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
F +L+ LPEL ++ +G + +++ P L+ M
Sbjct: 176 YNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMF 227
Score = 33.8 bits (77), Expect = 0.007
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L+ DIS + C+ L L + G+ VE+ ++ +L D+ +
Sbjct: 130 NLEIDISAFACLCALTL-ITERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQK 182
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 56.3 bits (135), Expect = 1e-10
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 139 CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEMLHA 184
+ L+ +L + I+++G EHL C P LL+EML+A
Sbjct: 191 SVRLANLLMLLSHVRHISNKGMEHLLSMKCKNVVPVYDLLLEMLNA 236
Score = 36.2 bits (83), Expect = 0.001
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLL-G 116
I + ++ + DQ++LL+ W ++L++ M + + + P + D + G
Sbjct: 54 KIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDH--PGKLIFAPDLVLDRDEGKCVEG 111
Query: 117 VPTLRDRFTQVTHKLSELKF 136
+ + D T + ELK
Sbjct: 112 ILEIFDMLLATTSRFRELKL 131
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 53.9 bits (129), Expect = 9e-10
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ DQ LL+ ++ ++ +L + + +G L G
Sbjct: 62 IPGFAELSPADQDLLLESAFLELFILRLAY--RSKPGEGKLIFCSGLVLHRLQCAR-GFG 118
Query: 119 TLRDRFTQVTHKLSELKFPN---------------------------------------- 138
D + L L
Sbjct: 119 DWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVA 178
Query: 139 --------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+L+ LPEL + ++G + +++ P ++ ++
Sbjct: 179 AVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIF 230
Score = 31.5 bits (71), Expect = 0.042
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQMK 72
L D+ + C+ L+L+ G+ VEE ++ L ++ + Q +
Sbjct: 133 SLLVDVPAFACLSALVLITDR-HGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLS 191
Query: 73 LLQHSWSDM--LVLDHMHQRMHNALPDETTLHN 103
L ++ L + + + L D
Sbjct: 192 RLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPP 224
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 51.2 bits (122), Expect = 1e-08
Identities = 19/172 (11%), Positives = 45/172 (26%), Gaps = 50/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + ++ +DQ+ LL+ +++ L ++ + TL+ L G+
Sbjct: 80 LPMFCELPCEDQIILLKGCCMEIMSLRAAV--RYDPESETLTLNGEMAVTRGQLKNGGLG 137
Query: 119 TLRDRFTQVTHKLSELKFPNCD-------------------------------------- 140
+ D + LS + +
Sbjct: 138 VVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI 197
Query: 141 ---------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQT-LLMEML 182
+ KL+ + +L I + H L +E+
Sbjct: 198 NYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVF 249
Score = 43.1 bits (101), Expect = 6e-06
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
D ++ ++ +LL++ D G+ +E+ + A Y
Sbjct: 152 SFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHH 203
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 50.5 bits (120), Expect = 1e-08
Identities = 20/183 (10%), Positives = 48/183 (26%), Gaps = 54/183 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + VDDQM ++Q+SW ++V + N F+ + +
Sbjct: 53 ALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRM 112
Query: 118 PTLRDRFTQVTHKLSELKF----------------------------------------- 136
+ R ++ + L+
Sbjct: 113 YSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDR 172
Query: 137 ----------PNCDKFGKLMSILPELHEIASRGEEHLYH---KHCNGGAPTQTLLMEMLH 183
+F +L +L + IA + + K ++ E++
Sbjct: 173 IIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIIS 232
Query: 184 AKR 186
+
Sbjct: 233 VQV 235
Score = 39.7 bits (92), Expect = 8e-05
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPD-VRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +++C+K LLL + V G+ N+ +E K L +
Sbjct: 128 WLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRR 187
Query: 72 --KLLQ 75
+L +
Sbjct: 188 FYQLTK 193
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 50.4 bits (120), Expect = 2e-08
Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + + DQ L + ++ ++ VL + N + + NG L + G
Sbjct: 62 IPGFADLPKADQDLLFESAFLELFVLRLAY--RSNPVEGKLIFCNGVVLHRLQC-VRGFG 118
Query: 119 TLRDRFTQVTHKLSELKFPN---------------------------------------- 138
D + + L +
Sbjct: 119 EWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVT 178
Query: 139 --------CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ KL+ LPEL + ++G + +++ P ++ ++
Sbjct: 179 FNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLF 230
Score = 37.7 bits (87), Expect = 4e-04
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+ DIS + C+ L + + G+ VEE ++ L D+ +
Sbjct: 133 NMNIDISAFSCI-AALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLN 185
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 50.0 bits (119), Expect = 2e-08
Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 55/175 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF---DLLSLGLL 115
I ++ + ++DQ+ LL++ + + + ++ D + NG F + L
Sbjct: 93 IPSFSSLFLNDQVTLLKYGVHEAIFA-MLASIVN---KDGLLVANGSGFVTREFLRSLRK 148
Query: 116 GVPTLRDRFTQVTHKLSELK-------------FPNCD---------------------- 140
+ + + K + L+ D
Sbjct: 149 PFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTILRALE 208
Query: 141 ------------KFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
F KL+ + +L ++ + + + K LL E+
Sbjct: 209 FHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSLHPLLQEIY 263
Score = 42.6 bits (100), Expect = 8e-06
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD ++L D G++N VE + + +AL + +P
Sbjct: 166 ALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTILRALEFHLQANHPD 217
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 48.5 bits (115), Expect = 7e-08
Identities = 18/182 (9%), Positives = 51/182 (28%), Gaps = 54/182 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + +DDQ+ L+Q+SW ++V + + + +
Sbjct: 54 SLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSF 113
Query: 118 PTLRDRFTQVTHKLSELKFPNCD------------------------------------- 140
+L Q+ + +L+ +
Sbjct: 114 YSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIK 173
Query: 141 --------------KFGKLMSILPELHEIASRGEEHLYH---KHCNGGAPTQTLLMEMLH 183
+F +L +L LH++ + + + + ++ E++
Sbjct: 174 AIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIA 233
Query: 184 AK 185
A+
Sbjct: 234 AQ 235
Score = 40.0 bits (93), Expect = 6e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGIL-NRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
+L+ +++C+K LLLLN L ++T EE + L+ + Q
Sbjct: 129 KLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQR 188
Query: 72 --KLLQHSWSDMLVLDHMHQ 89
+L +LD++H
Sbjct: 189 FYQLT-------KLLDNLHD 201
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 48.2 bits (114), Expect = 1e-07
Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 53/181 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
I + + +DDQM LLQ+SW ++ + + + + + L +
Sbjct: 51 AIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDM 110
Query: 118 PTLRDRFTQVTHKLSELKF----------------------------------------- 136
V+ +L L+
Sbjct: 111 YDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGK 170
Query: 137 ----------PNCDKFGKLMSILPELHEIASRGEEHLYHK--HCNGGAPTQTLLMEMLHA 184
N +F +L +L +HE+ + + +L E++
Sbjct: 171 AIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEIITN 230
Query: 185 K 185
+
Sbjct: 231 Q 231
Score = 40.9 bits (95), Expect = 3e-05
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGIL-NRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM 71
L+ +Y+C+K LLLL+ + L ++ +E K L + + Q
Sbjct: 126 RLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQR 185
Query: 72 --KLLQ 75
+L +
Sbjct: 186 FYQLTK 191
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 46.5 bits (110), Expect = 4e-07
Identities = 24/175 (13%), Positives = 49/175 (28%), Gaps = 55/175 (31%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKF---DLLSLGLL 115
I + + ++DQ+ LL++ +++ + M+ D + GQ F + L
Sbjct: 97 IPGFVNLDLNDQVTLLKYGVHEIIYT-MLASLMN---KDGVLISEGQGFMTREFLKSLRK 152
Query: 116 GVPTLRDRFTQVTHKLSELK---------------------------------------- 135
+ + K + L+
Sbjct: 153 PFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALE 212
Query: 136 ------FPNC-DKFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
P F KL+ + +L +I + + L K LL E+
Sbjct: 213 LQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 267
Score = 41.9 bits (98), Expect = 1e-05
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD +++L+ D G+LN +E+ + + +AL +P+
Sbjct: 170 ALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPE 221
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 45.8 bits (108), Expect = 6e-07
Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 51/175 (29%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVL------------------------DHMHQRMHN 93
I + + +DQ+ LL+ S ++++L + + H+
Sbjct: 79 MIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHS 138
Query: 94 ALPDETTLHNGQKFDLLSL-----GLLG-----------------VPTLRDRFTQVTHKL 131
E + L+L LL + ++DR +
Sbjct: 139 LELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTY 198
Query: 132 SELKFPNCDK---FGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQT--LLMEM 181
+ P + K++ L +L + + + L++E+
Sbjct: 199 IRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEV 253
Score = 43.1 bits (101), Expect = 5e-06
Identities = 8/52 (15%), Positives = 24/52 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+L +++ + + +++PD G+ + +E +++ L Y +P
Sbjct: 154 KLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPP 205
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 45.4 bits (107), Expect = 8e-07
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 51/172 (29%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLG-- 116
+ + Q+ +DQ+ LL+ S ++++L+ + H + T + G
Sbjct: 70 VPGFLQLGREDQIALLKASTIEIMLLETARRYNHE--TECITFLKDFTYSKDDFHRAGLQ 127
Query: 117 ---------------------------------------------VPTLRDRFTQVTHKL 131
V L+ + +
Sbjct: 128 VEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSY 187
Query: 132 SELKFPNC-DKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ +K P +F +++ L L ++S E ++ LL E+
Sbjct: 188 TRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPP-LLSEIW 238
Score = 41.2 bits (96), Expect = 2e-05
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L D ++Y + + + + D + VE + +ALL Y PQ
Sbjct: 143 RLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQ 194
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 44.7 bits (105), Expect = 2e-06
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
+L+ +Y+ ++ + L +PD G+L V++ EQ L Y PQ
Sbjct: 191 KLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPA 244
Score = 43.6 bits (102), Expect = 4e-06
Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 57/176 (32%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQ------------ 105
I+ + + ++DQ+ LL+ + ++ L + + + T G+
Sbjct: 119 VISYFRDLPIEDQISLLKGAAFELCQL-RFNTVFN---AETGTWECGRLSYCLEDTAGGF 174
Query: 106 ------------------KFDLLSLGLLG-----------------VPTLRDRFTQVTHK 130
+ L+ V L+++F
Sbjct: 175 QQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKS 234
Query: 131 LSELKFPNCD---KFGKLMSILPELHEIASRGEEHLYH-KHCNGGAPTQTLLMEML 182
E P F K+M++L EL I ++ + L + + A L+ E+
Sbjct: 235 YIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFAT--PLMQELF 288
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 44.6 bits (105), Expect = 2e-06
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 8/134 (5%)
Query: 56 DYCITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLL 115
I + L + M + + D++ + +
Sbjct: 129 MLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRP 188
Query: 116 G------VPTLRDRFTQVTHKLSELKFPNC-DKFGKLMSILPELHEIASRGEEHLYH-KH 167
G + +++ V + P+ F KL+ + +L ++ + + + K
Sbjct: 189 GLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKK 248
Query: 168 CNGGAPTQTLLMEM 181
A LL E+
Sbjct: 249 TESDAALHPLLQEI 262
Score = 41.5 bits (97), Expect = 2e-05
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ D SD ++ D G+LN H+E+ E + L + + +P
Sbjct: 166 ALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPD 217
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 44.3 bits (104), Expect = 2e-06
Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 49/170 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
IT + ++ +DQ+ LL+ +++++ + T L G+ + LG
Sbjct: 73 ITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL---NNTVLFEGKYGGMQMFKALGSD 129
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
L + L L+
Sbjct: 130 DLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVI 189
Query: 137 ----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
+ + KL++ +P + + + E L + TL +
Sbjct: 190 QKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLY 239
Score = 38.2 bits (88), Expect = 3e-04
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
L+ + +L++PD +L V++ E++ AL +
Sbjct: 144 SLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLD 195
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 43.6 bits (102), Expect = 4e-06
Identities = 17/170 (10%), Positives = 39/170 (22%), Gaps = 49/170 (28%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
I + ++ +DQ+ LL+ +++ + M + + + T +G+ LG
Sbjct: 81 IDGFMELCQNDQIVLLKAGSLEVVFI-RMCRAFDS--QNNTVYFDGKYASPDVFKSLGCE 137
Query: 119 TLRDRFTQVTHKLSELKF------------------------------------------ 136
+ L +
Sbjct: 138 DFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVL 197
Query: 137 ----PNCDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
KL+ + L + R E L + +
Sbjct: 198 QKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY 247
Score = 37.0 bits (85), Expect = 7e-04
Identities = 6/52 (11%), Positives = 20/52 (38%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
+ + +L++ D + + +E+ +++Q AL + +
Sbjct: 152 SMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHRE 203
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 42.7 bits (100), Expect = 6e-06
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYP 63
+L+ +Y+ + + L +PD G+ R +++ E++ L Y
Sbjct: 149 KLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQR 199
Score = 39.3 bits (91), Expect = 1e-04
Identities = 20/174 (11%), Positives = 48/174 (27%), Gaps = 55/174 (31%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + ++DQ+ LL+ + ++ + ++ L + L ++ + +G
Sbjct: 76 DLPVFRSLPIEDQISLLKGAAVEICHI-VLNTTFC--LQTQNFLCGPLRYTIEDGARVGF 132
Query: 118 -PTLRDRFTQVTHKLSELKFPNCD------------------------------------ 140
+ L +L+ +
Sbjct: 133 QVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQS 192
Query: 141 -------------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEM 181
+ KL+ +L EL I + H G + LL E+
Sbjct: 193 YIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQ--GLSAMMPLLQEI 244
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 42.7 bits (100), Expect = 7e-06
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQ 66
L +Y+ + L +PD G+ R +++ E++ L ++ + ++Q
Sbjct: 148 GLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALILNNHIMEQQSRLQ 201
Score = 28.5 bits (63), Expect = 0.40
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 58 CITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGV 117
+ + + ++DQ+ LL+ + ++L + + ++
Sbjct: 75 DLPLFRSLTMEDQISLLKGAAVEILHI--SLNTTFCLQTENFFCGPLCYKMEDAVHAGFQ 132
Query: 118 PTLRDRFTQVTHKLSELK 135
+ L L
Sbjct: 133 YEFLESILHFHKNLKGLH 150
Score = 27.3 bits (60), Expect = 0.97
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 117 VPTLRDRFTQVTHKLSELKFPNCDK---FGKLMSILPELHEIASRGEEHLYH 165
+ L++ + + + + KLM +L +L I + L
Sbjct: 178 IDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSYELQR 229
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 42.7 bits (100), Expect = 7e-06
Identities = 22/173 (12%), Positives = 46/173 (26%), Gaps = 52/173 (30%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVLDHMHQRMHNALPDETTLHNGQKFDLLSLGLLGVP 118
+ + +I DQ+ LL+ S++++L + +R A D N Q + + G+
Sbjct: 71 LPGFAKISQSDQITLLKACSSEVMML-RVARRYD-AATDSVLFANNQAYTRDNYRKAGMA 128
Query: 119 TLRDRFTQVTHKLSELKFPNCD-------------------------------------- 140
+ + + + N
Sbjct: 129 YVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLNTLRVYIL 188
Query: 141 -----------KFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
FGK++ IL E+ + + L E+
Sbjct: 189 NQNSASPRCAVIFGKILGILTEIRTLGMQNSNMCISLKLKNRKLPP-FLEEIW 240
Score = 36.1 bits (83), Expect = 0.001
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 13 ELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQIQVDDQM- 71
+ D Y + +++ D G+ VEE L Y + +
Sbjct: 143 SMMMDNVHYALLTAIVI-FSDRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIF 201
Query: 72 -KLLQ 75
K+L
Sbjct: 202 GKILG 206
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 14 LKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDYCITAYPQ 64
LK +Y + +++L+PD + I +R VE+ E + L C P+
Sbjct: 135 LKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPE 185
Score = 41.2 bits (96), Expect = 2e-05
Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 43/166 (25%)
Query: 59 ITAYPQIQVDDQMKLLQHSWSDMLVL-------------------DHMHQRMHNALPDET 99
+ + + +DQ+ LL+ S + + L + + +
Sbjct: 65 LPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITP 124
Query: 100 TLHNGQKFDLLSL-----GLLG-----------------VPTLRDRFTQVTHKLSELKFP 137
+ L + LL V L++ V KL ++ P
Sbjct: 125 MFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQP 184
Query: 138 N-CDKFGKLMSILPELHEIASRGEEHLYHKHCNGGAPTQTLLMEML 182
F L+ L EL E L N LL E+
Sbjct: 185 ENPQHFACLLGRLTELRTFNHHHAEMLMSWRVN-DHKFTPLLCEIW 229
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli
[TaxId: 562]}
Length = 86
Score = 24.3 bits (53), Expect = 4.3
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 12 LELKFDISDYICVKFLLLLNPDVRGILNRTHVEEGHEQVQKALLDY--CITAYPQ 64
+ELK ISDY +F+ LL I + V LL++ IT +P
Sbjct: 1 MELKNSISDYTEAEFVQLLK----EIEKEN--VAATDDVLDVLLEHFVKITEHPD 49
>d1bama_ c.52.1.3 (A:) Restriction endonuclease BamHI {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 213
Score = 24.2 bits (52), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 166 KHCNGGAPTQTLLMEML 182
K+CNG P + L +L
Sbjct: 52 KNCNGVVPIKELCYTLL 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,812
Number of extensions: 30554
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 95
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)