BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12694
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P33244|FTZF1_DROME Nuclear hormone receptor FTZ-F1 OS=Drosophila melanogaster
GN=ftz-f1 PE=1 SV=2
Length = 1027
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 3/86 (3%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNL 60
MRGGRNKFGPMYKRDRARKLQ+MRQRQ+A+Q L+ + M D +P Y N+
Sbjct: 583 MRGGRNKFGPMYKRDRARKLQVMRQRQLALQALRNS---MGPDIKPTPISPGYQQAYPNM 639
Query: 61 YIKQEIQIPQVSSLTSSPDSSPSPIA 86
IKQEIQIPQVSSLT SPDSSPSPIA
Sbjct: 640 NIKQEIQIPQVSSLTQSPDSSPSPIA 665
>sp|P49867|FTZF1_BOMMO Nuclear hormone receptor FTZ-F1 OS=Bombyx mori GN=FTZ-F1 PE=1 SV=2
Length = 534
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 9/85 (10%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGD-GVTLSYNPASTSPYGN 59
MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTL+ + +GD G+ L + SPY
Sbjct: 164 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLRGS----LGDGGLVLGFG----SPYTA 215
Query: 60 LYIKQEIQIPQVSSLTSSPDSSPSP 84
+ +KQEIQIPQVSSLTSSP+SSP P
Sbjct: 216 VSVKQEIQIPQVSSLTSSPESSPGP 240
>sp|Q9GKL2|STF1_HORSE Steroidogenic factor 1 OS=Equus caballus GN=NR5A1 PE=2 SV=1
Length = 461
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|Q95L87|STF1_MACEU Steroidogenic factor 1 OS=Macropus eugenii GN=NR5A1 PE=2 SV=1
Length = 463
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSP 56
MRGGRNKFGPMYKRDRA K Q + L RA+ + + G ++ P + P
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQK--------KALIRANGFKLETGPSMGPPPQTDYP 135
>sp|P79387|STF1_PIG Steroidogenic factor 1 OS=Sus scrofa GN=NR5A1 PE=2 SV=3
Length = 461
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|O42101|NR5A2_CHICK Nuclear receptor subfamily 5 group A member 2 OS=Gallus gallus
GN=NR5A2 PE=2 SV=1
Length = 501
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MRGGRNKFGPMYKRDRARKLQ 21
MRGGRNKFGPMYKRDRA K Q
Sbjct: 121 MRGGRNKFGPMYKRDRALKQQ 141
>sp|Q04752|STF1_BOVIN Steroidogenic factor 1 OS=Bos taurus GN=NR5A1 PE=1 SV=1
Length = 461
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|O00482|NR5A2_HUMAN Nuclear receptor subfamily 5 group A member 2 OS=Homo sapiens
GN=NR5A2 PE=1 SV=2
Length = 541
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MRGGRNKFGPMYKRDRARKLQ 21
MRGGRNKFGPMYKRDRA K Q
Sbjct: 161 MRGGRNKFGPMYKRDRALKQQ 181
>sp|Q9QWM1|NR5A2_RAT Nuclear receptor subfamily 5 group A member 2 OS=Rattus norvegicus
GN=Nr5a2 PE=2 SV=1
Length = 560
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTS 55
MRGGRNKFGPMYKRDRA K Q ++R + ++ + + M D + N S S
Sbjct: 182 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTSAIQNIHSAS 239
>sp|P45448|NR5A2_MOUSE Nuclear receptor subfamily 5 group A member 2 OS=Mus musculus
GN=Nr5a2 PE=1 SV=3
Length = 560
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MRGGRNKFGPMYKRDRARKLQ---MMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTS 55
MRGGRNKFGPMYKRDRA K Q ++R + ++ + + M D + N S S
Sbjct: 182 MRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTSAIQNIHSAS 239
>sp|Q13285|STF1_HUMAN Steroidogenic factor 1 OS=Homo sapiens GN=NR5A1 PE=1 SV=2
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|P33242|STF1_MOUSE Steroidogenic factor 1 OS=Mus musculus GN=Nr5a1 PE=1 SV=3
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|P50569|STF1_RAT Steroidogenic factor 1 OS=Rattus norvegicus GN=Nr5a1 PE=2 SV=1
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/25 (80%), Positives = 20/25 (80%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQ 25
MRGGRNKFGPMYKRDRA K Q Q
Sbjct: 88 MRGGRNKFGPMYKRDRALKQQKKAQ 112
>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25 OS=Caenorhabditis
elegans GN=nhr-25 PE=1 SV=1
Length = 572
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 1 MRGGRNKFGPMYKRDRARKLQMMRQRQIAVQ 31
MRGGRNKFG YK+DRA ++Q R VQ
Sbjct: 93 MRGGRNKFGSFYKKDRAHRMQRNAMRVSTVQ 123
>sp|Q91WL5|CP4CA_MOUSE Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=2
Length = 508
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 40 MIGDGVTLSYNPASTSPYGNLYIKQEIQI----PQVSSLTSSPDSSP 82
++GDG ++++N PY + IK+ ++I P VS SSP + P
Sbjct: 352 LLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFP 398
>sp|B4TYZ1|RSMJ_SALSV Ribosomal RNA small subunit methyltransferase J OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmJ PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 40 MIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSSPSP 84
++ DG+T Y A P+ ++Q +Q+ SSLT+ D +P P
Sbjct: 125 LLDDGLTRGYADADIGPW----LQQRLQLIHASSLTALTDITPRP 165
>sp|A9MLL7|RSMJ_SALAR Ribosomal RNA small subunit methyltransferase J OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmJ PE=3 SV=1
Length = 249
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 30 VQTLQR--ASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLTSSPDSSPSP 84
V+ L+R ++ DG+ Y A P+ ++Q +Q+ SSLT+ D +P P
Sbjct: 113 VRMLERNPVVAALLDDGLARGYADADIGPW----LRQRLQLIHASSLTALTDITPRP 165
>sp|Q0C8L9|HMDH_ASPTN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_09965
PE=3 SV=1
Length = 1048
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 74 LTSSPDSSPSPIASHRTEKSLYSS--------SYIPSDMEDD 107
+T +PDSSPSP S T + YS IPS+ EDD
Sbjct: 143 ITPTPDSSPSPDHSALTFRVPYSQLDGFLQAVEIIPSEKEDD 184
>sp|P14581|CP4A7_RABIT Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CYP4A7 PE=1 SV=1
Length = 511
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 40 MIGDGVTLSYNPASTSPYGNLYIKQEIQ----IPQVSSLTSSPDSSP 82
++GDG ++++ PY + IK+ ++ +P V S SSP + P
Sbjct: 355 LLGDGASITWEHLDKMPYTTMCIKEALRLYPPVPGVGSKLSSPVTFP 401
>sp|Q68EZ3|ANM6_XENLA Protein arginine N-methyltransferase 6 OS=Xenopus laevis GN=prmt6
PE=2 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 53 STSPYGN--------LYIKQEIQIPQVSSLTSSPDSSPSPI 85
STSPYG LY+ +EIQ+ Q + +T SPS +
Sbjct: 273 STSPYGEETHWKQTLLYLDEEIQVEQDTDITGDITLSPSDV 313
>sp|P20816|CP4A2_RAT Cytochrome P450 4A2 OS=Rattus norvegicus GN=Cyp4a2 PE=1 SV=2
Length = 504
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 40 MIGDGVTLSYNPASTSPYGNLYIKQEIQ----IPQVSSLTSSPDSSP 82
++GDG +++++ PY + IK+ ++ +P VS SSP + P
Sbjct: 348 ILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFP 394
>sp|Q2NIN2|SYH_AYWBP Histidine--tRNA ligase OS=Aster yellows witches'-broom phytoplasma
(strain AYWB) GN=hisS PE=3 SV=1
Length = 427
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 8 FGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSY 49
+GP ++ +R +K + + Q+ V+ L ++SP++ + + L+Y
Sbjct: 105 YGPFFRYERPQKGRYRQFHQVGVEILGQSSPFLDVEVIFLAY 146
>sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis
GN=prmt6 PE=2 SV=1
Length = 340
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 53 STSPYGN--------LYIKQEIQIPQVSSLTSSPDSSPSPI 85
STSPYG LY+ +E+Q+ Q + +T SPS I
Sbjct: 273 STSPYGEETHWKQTLLYLDEEVQVEQDTEITGDVTLSPSDI 313
>sp|Q46FH1|VATC_METBF V-type ATP synthase subunit C OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=atpC PE=3 SV=1
Length = 360
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 15 DRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQ---- 70
D + + R ++ V L P MI G+ L +T PY E+Q Q
Sbjct: 225 DVKNLINLFRLKKAGVMQLDEIMPLMIEGGLELKPEKLATLPYDEFV--NELQRTQYWDV 282
Query: 71 VSSLTSSPDSSPSPIASHRTEKSLYSSSYI 100
+S +TSS +S + + S T L SS+ +
Sbjct: 283 ISGVTSSDMTSLTTLESRLTRYYLESSTVL 312
>sp|A7NFI9|ENO_ROSCS Enolase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
GN=eno PE=3 SV=1
Length = 429
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 27 QIAVQTLQRASPYMIGDGVTLSYNPASTSPY--GNLYIKQE 65
QI V+ ++RA Y +GD V L+ +PA T Y G ++++E
Sbjct: 222 QIIVEAVERAG-YQLGDQVMLAMDPACTELYKDGKYHLERE 261
>sp|B8E1C1|SYH_DICTD Histidine--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=hisS PE=3 SV=1
Length = 411
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 9 GPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQI 68
GPM++ +R + + + Q+ V+ L R PY+ + ++L+ + NL EI+I
Sbjct: 108 GPMFRYERPQSGRYRQFHQLGVEVLGRKDPYIDFEVISLAVEILKSLKLENL----EIEI 163
Query: 69 PQVSSLTSSP 78
+ L P
Sbjct: 164 NSLGCLKCRP 173
>sp|Q5RJB0|BHA09_MOUSE Class A basic helix-loop-helix protein 9 OS=Mus musculus GN=Bhlha9
PE=2 SV=1
Length = 231
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 16 RARKLQMMRQRQIAVQTLQRASPYMIGDGVTLSYNPASTSPYGNLYIKQEIQIPQVSSLT 75
RA + + +R + TL+RA + + L +PA P G+L Q Q SS
Sbjct: 86 RALQHDLGGKRLSKIATLRRAIHRITALSLVLRASPAPRWPCGHLECHG--QAAQGSSTG 143
Query: 76 SS----PDSSPSPIASHRTEKSLYS 96
+S P S+PSPIA T + + S
Sbjct: 144 NSSFSVPRSAPSPIAPSLTRRDIAS 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,252,131
Number of Sequences: 539616
Number of extensions: 1463363
Number of successful extensions: 4248
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4211
Number of HSP's gapped (non-prelim): 65
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)