Query psy12694
Match_columns 112
No_of_seqs 43 out of 45
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 17:16:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ik9_C DNA ligase IV; DNA END 13.0 42 0.0014 19.1 -0.0 11 7-17 13-23 (37)
2 2dl1_A Spartin; SPG20, MIT, st 11.4 1.5E+02 0.0051 20.9 2.5 10 13-22 69-78 (116)
3 3eab_A Spastin; spastin, MIT, 9.2 2E+02 0.0069 19.4 2.4 9 14-22 64-72 (89)
4 3htu_B Vacuolar protein-sortin 8.1 2.3E+02 0.0079 16.4 2.0 10 13-22 6-18 (39)
5 1eqq_A Single stranded DNA bin 8.0 82 0.0028 22.9 0.0 9 102-110 170-178 (178)
6 2p22_D Hypothetical 12.0 kDa p 7.2 10 0.00035 25.7 -4.8 15 5-19 13-27 (79)
7 3lgj_A Single-stranded DNA-bin 6.1 1.2E+02 0.004 21.9 0.0 13 98-110 157-169 (169)
8 2xzm_C KH domain containing pr 5.8 1.7E+02 0.0059 22.8 0.8 8 4-11 199-206 (243)
9 3rjs_A Dynein light chain moto 5.8 1.4E+02 0.0049 19.2 0.3 8 4-12 59-66 (89)
10 2rdd_B UPF0092 membrane protei 5.2 3.4E+02 0.012 14.9 1.7 8 18-25 25-32 (37)
No 1
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=13.02 E-value=42 Score=19.11 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=9.3
Q ss_pred CCCcchhhHHH
Q psy12694 7 KFGPMYKRDRA 17 (112)
Q Consensus 7 KFGPmYKRDRA 17 (112)
+||-.|.||=-
T Consensus 13 ~yGDSY~rd~t 23 (37)
T 1ik9_C 13 CYGDSYFIDTD 23 (37)
T ss_dssp TTSCBSSSCCC
T ss_pred cccccccCcCC
Confidence 79999999854
No 2
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=11.41 E-value=1.5e+02 Score=20.92 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=7.5
Q ss_pred hhHHHHHHHH
Q psy12694 13 KRDRARKLQM 22 (112)
Q Consensus 13 KRDRA~k~Q~ 22 (112)
.||||+++|.
T Consensus 69 ~we~Ar~lq~ 78 (116)
T 2dl1_A 69 GWESARQMQQ 78 (116)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5788888774
No 3
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=9.21 E-value=2e+02 Score=19.37 Aligned_cols=9 Identities=56% Similarity=0.778 Sum_probs=6.4
Q ss_pred hHHHHHHHH
Q psy12694 14 RDRARKLQM 22 (112)
Q Consensus 14 RDRA~k~Q~ 22 (112)
+|||+++|.
T Consensus 64 we~Ar~LQ~ 72 (89)
T 3eab_A 64 CERARRLQA 72 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578887664
No 4
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=8.13 E-value=2.3e+02 Score=16.41 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=6.8
Q ss_pred hhHHH---HHHHH
Q psy12694 13 KRDRA---RKLQM 22 (112)
Q Consensus 13 KRDRA---~k~Q~ 22 (112)
..||| +|+|+
T Consensus 6 ~qDrAIL~LK~QR 18 (39)
T 3htu_B 6 EQDKAILQLKQQR 18 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 57898 66664
No 5
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=7.96 E-value=82 Score=22.86 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q psy12694 102 SDMEDDVPY 110 (112)
Q Consensus 102 ~~~~~~~~~ 110 (112)
-|++||+||
T Consensus 170 ~~~dddipf 178 (178)
T 1eqq_A 170 MDFDDDIPF 178 (178)
T ss_dssp ---------
T ss_pred CCcCCCCCC
Confidence 388999997
No 6
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=7.18 E-value=10 Score=25.73 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=10.7
Q ss_pred CCCCCcchhhHHHHH
Q psy12694 5 RNKFGPMYKRDRARK 19 (112)
Q Consensus 5 RNKFGPmYKRDRA~k 19 (112)
||+||-+|-|-|..|
T Consensus 13 yN~~g~~~P~~~~~K 27 (79)
T 2p22_D 13 YNKYGKDFPQETVTR 27 (79)
T ss_dssp EESSSTTSCCCCCCC
T ss_pred ccccccccccccccc
Confidence 688998888854343
No 7
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=6.06 E-value=1.2e+02 Score=21.89 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCC
Q psy12694 98 SYIPSDMEDDVPY 110 (112)
Q Consensus 98 ~~~~~~~~~~~~~ 110 (112)
+.-+.|.+||+||
T Consensus 157 ~~~~~~~dddiPF 169 (169)
T 3lgj_A 157 DDYGISAHDSMPF 169 (169)
T ss_dssp -------------
T ss_pred ccCCCCCCCCCCC
Confidence 3346788899997
No 8
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=5.81 E-value=1.7e+02 Score=22.80 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=5.1
Q ss_pred CCCCCCcc
Q psy12694 4 GRNKFGPM 11 (112)
Q Consensus 4 GRNKFGPm 11 (112)
|++||||-
T Consensus 199 g~~~~gp~ 206 (243)
T 2xzm_C 199 PAKKFGVK 206 (243)
T ss_dssp TTCCSSCC
T ss_pred CcccCCCC
Confidence 66667663
No 9
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=5.78 E-value=1.4e+02 Score=19.24 Aligned_cols=8 Identities=63% Similarity=1.157 Sum_probs=4.7
Q ss_pred CCCCCCcch
Q psy12694 4 GRNKFGPMY 12 (112)
Q Consensus 4 GRNKFGPmY 12 (112)
||| ||..+
T Consensus 59 G~~-Fgs~v 66 (89)
T 3rjs_A 59 GRN-FGSYV 66 (89)
T ss_dssp ESS-CCCCC
T ss_pred ecC-eeEEE
Confidence 566 66544
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=5.20 E-value=3.4e+02 Score=14.86 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy12694 18 RKLQMMRQ 25 (112)
Q Consensus 18 ~k~Q~~~q 25 (112)
+|+|+.++
T Consensus 25 ~Kr~K~~~ 32 (37)
T 2rdd_B 25 QKRTKEHK 32 (37)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 34444443
Done!