Query psy12694
Match_columns 112
No_of_seqs 43 out of 45
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 17:16:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0yb_ d.80.1.1 (B:) Trans-3- 8.6 69 0.005 18.7 1.4 11 16-26 13-23 (55)
2 d2phla2 b.82.1.2 (A:220-381) S 7.4 24 0.0017 23.4 -1.4 11 6-16 5-15 (162)
3 d1jdla_ a.3.1.1 (A:) Cytochrom 6.7 75 0.0055 19.6 1.0 9 3-11 22-30 (118)
4 d1sisa_ g.3.7.2 (A:) Toxin I5a 5.1 61 0.0044 17.5 -0.2 8 3-10 21-29 (35)
5 d3cx5g1 f.27.1.1 (G:3-127) 14 4.8 97 0.0071 20.5 0.6 9 4-12 35-43 (125)
6 d1t4ba1 c.2.1.3 (A:1-133,A:355 4.6 60 0.0044 21.0 -0.6 9 103-111 102-110 (146)
7 d1ppjf_ f.27.1.1 (F:) 14 kDa p 4.3 1.1E+02 0.0082 19.3 0.6 9 4-12 14-22 (99)
8 d2zjra2 b.40.4.5 (A:33-127) N- 4.2 1.2E+02 0.009 18.9 0.8 15 2-16 8-22 (95)
9 d1ycca_ a.3.1.1 (A:) Mitochond 3.5 1.8E+02 0.013 17.5 1.1 9 3-11 28-36 (108)
10 d1z6oa1 a.25.1.1 (A:13-212) (A 3.5 1.4E+02 0.01 19.9 0.5 11 1-11 84-94 (200)
No 1
>d1s0yb_ d.80.1.1 (B:) Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=8.56 E-value=69 Score=18.68 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=8.1
Q ss_pred HHHHHHHHHHh
Q psy12694 16 RARKLQMMRQR 26 (112)
Q Consensus 16 RA~k~Q~~~qr 26 (112)
-|+|+|++|--
T Consensus 13 ~ar~~ql~rdi 23 (55)
T d1s0yb_ 13 VARKQQLIRDV 23 (55)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47899988743
No 2
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Probab=7.42 E-value=24 Score=23.40 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=9.5
Q ss_pred CCCCcchhhHH
Q psy12694 6 NKFGPMYKRDR 16 (112)
Q Consensus 6 NKFGPmYKRDR 16 (112)
|+||.+|+++.
T Consensus 5 n~fg~~~~~~~ 15 (162)
T d2phla2 5 NEFGNLTERTD 15 (162)
T ss_dssp ETTEEEEEEEE
T ss_pred cccCceeecCC
Confidence 88999999885
No 3
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=6.74 E-value=75 Score=19.56 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=7.0
Q ss_pred CCCCCCCcc
Q psy12694 3 GGRNKFGPM 11 (112)
Q Consensus 3 GGRNKFGPm 11 (112)
||.|++||-
T Consensus 22 ~~~~~iGP~ 30 (118)
T d1jdla_ 22 DAKNLVGPA 30 (118)
T ss_dssp TCCCSSSCC
T ss_pred CCCCCCCCc
Confidence 678888884
No 4
>d1sisa_ g.3.7.2 (A:) Toxin I5a {Scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=5.12 E-value=61 Score=17.47 Aligned_cols=8 Identities=75% Similarity=1.593 Sum_probs=4.4
Q ss_pred CCCCC-CCc
Q psy12694 3 GGRNK-FGP 10 (112)
Q Consensus 3 GGRNK-FGP 10 (112)
|||-| |||
T Consensus 21 gg~gkcfgp 29 (35)
T d1sisa_ 21 GGNGKCFGP 29 (35)
T ss_dssp TTCEEEETT
T ss_pred CCCccccCc
Confidence 45544 665
No 5
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.79 E-value=97 Score=20.50 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=5.2
Q ss_pred CCCCCCcch
Q psy12694 4 GRNKFGPMY 12 (112)
Q Consensus 4 GRNKFGPmY 12 (112)
|=||+|-+|
T Consensus 35 gyrk~GL~~ 43 (125)
T d3cx5g1 35 GYKKLGLKF 43 (125)
T ss_dssp CGGGGTCCG
T ss_pred ChhhccCcH
Confidence 446666655
No 6
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=4.64 E-value=60 Score=20.99 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q psy12694 103 DMEDDVPYL 111 (112)
Q Consensus 103 ~~~~~~~~~ 111 (112)
-|++||||+
T Consensus 102 R~~~dvplv 110 (146)
T d1t4ba1 102 RMKDDAIII 110 (146)
T ss_dssp TTCTTEEEE
T ss_pred ccCCCCcEE
Confidence 478888874
No 7
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.30 E-value=1.1e+02 Score=19.35 Aligned_cols=9 Identities=56% Similarity=0.711 Sum_probs=6.3
Q ss_pred CCCCCCcch
Q psy12694 4 GRNKFGPMY 12 (112)
Q Consensus 4 GRNKFGPmY 12 (112)
|=||+|-+|
T Consensus 14 gyrk~GL~~ 22 (99)
T d1ppjf_ 14 GFNKLGLMR 22 (99)
T ss_dssp CGGGGTCCG
T ss_pred hhhhhcccH
Confidence 557777766
No 8
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.22 E-value=1.2e+02 Score=18.92 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=9.4
Q ss_pred CCCCCCCCcchhhHH
Q psy12694 2 RGGRNKFGPMYKRDR 16 (112)
Q Consensus 2 RGGRNKFGPmYKRDR 16 (112)
.||||-.|-+=-|=|
T Consensus 8 ~~GRNn~GrIT~rhr 22 (95)
T d2zjra2 8 TGGRNNRGRITSRFI 22 (95)
T ss_dssp CCCCBCSSSBCSCSC
T ss_pred CCCcCCCCCEEEEEE
Confidence 378887776544433
No 9
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.53 E-value=1.8e+02 Score=17.48 Aligned_cols=9 Identities=56% Similarity=1.066 Sum_probs=6.2
Q ss_pred CCCCCCCcc
Q psy12694 3 GGRNKFGPM 11 (112)
Q Consensus 3 GGRNKFGPm 11 (112)
||.|+.||-
T Consensus 28 ~~~~~~GP~ 36 (108)
T d1ycca_ 28 GGPHKVGPN 36 (108)
T ss_dssp TCCCCSSCC
T ss_pred CCCcccccc
Confidence 567777764
No 10
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]}
Probab=3.47 E-value=1.4e+02 Score=19.92 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCCCCCCCCcc
Q psy12694 1 MRGGRNKFGPM 11 (112)
Q Consensus 1 MRGGRNKFGPm 11 (112)
+|||+.+|+..
T Consensus 84 ~RGg~v~~~~i 94 (200)
T d1z6oa1 84 KRGDKMNFDQH 94 (200)
T ss_dssp HTTCCCCTTCC
T ss_pred HcCCceecCcc
Done!