RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12694
         (112 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 11/33 (33%)

Query: 63 KQEIQIPQVSSLTSS-----PDSSPSPIASHRT 90
          KQ ++      L +S      DS+P+ +A   T
Sbjct: 19 KQALK-----KLQASLKLYADDSAPA-LAIKAT 45


>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
           DNA- binding domain, transcription factor, FTZ-F1,
           C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
          Length = 113

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 19/21 (90%), Positives = 19/21 (90%)

Query: 1   MRGGRNKFGPMYKRDRARKLQ 21
           MRGGRNKFGPMYKRDRA K Q
Sbjct: 87  MRGGRNKFGPMYKRDRALKQQ 107


>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
           botulism, domain organization, endopeptidase,
           translocation, hydrolase; 2.65A {Clostridium botulinum}
          Length = 1252

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 43  DGVTLSY--NPASTSPYGNLYIKQEIQI-PQVSSLTSSPDSSPSPIASHRTEKSLYSSSY 99
           +  T+ Y         Y +  I + I I P+ + + ++P     P +    + S Y  +Y
Sbjct: 14  NDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNY 73

Query: 100 IPSDMEDD 107
           + SD E D
Sbjct: 74  LQSDEEKD 81


>3sri_A Apical membrane antigen 1; AMA1, RON2, malaria, cell invasion;
           1.60A {Plasmodium falciparum} PDB: 3srj_A 3zwz_A 2z8v_A
           2z8w_A 1z40_A 2q8a_A 2q8b_A 1yxe_A
          Length = 381

 Score = 25.6 bits (55), Expect = 4.0
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 64  QEIQIPQVSSLTSSPDSSP---SPIASHRTEKSLYSSSYIPSDMEDDVP 109
           QE   P+  +   S  +S     P      +  +Y S  +  + E   P
Sbjct: 161 QENNGPRYCNKDESKRNSMFCFRPAKDKSFQNYVYLSKNVVDNWEKVCP 209


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 4.8
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 14/66 (21%)

Query: 31  QTLQRASPYMIGDGV--------TLSYNPASTSPY---G-NLY--IKQEIQIPQVSSLTS 76
           + L +    ++GD +         L             G N+   ++     P    L S
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233

Query: 77  SPDSSP 82
            P S P
Sbjct: 234 IPISCP 239


>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F; clostridium
           botulinum neurotoxin serotype F, light chain, catalytic
           domain, X-RAY,; 1.80A {Clostridium botulinum} PDB:
           2a8a_A 3fie_A 3fii_A
          Length = 439

 Score = 25.1 bits (54), Expect = 6.0
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 45  VTLSYNPASTSPYGNLYIKQEIQI-PQVSSLTSSPDSSPSPIASHRTEKSLYSSSYIPSD 103
           + + Y   S   Y    I + + I P+ +++ ++P     P +      + Y  +Y+ +D
Sbjct: 22  MQIPYEEKSKKYYKAFEIMRNVWIIPERNTIGTNPSDFDPPASLKNGSSAYYDPNYLTTD 81

Query: 104 MEDD 107
            E D
Sbjct: 82  AEKD 85


>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
           motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
           irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
           1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
           2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
           2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
          Length = 837

 Score = 25.0 bits (55), Expect = 7.2
 Identities = 3/18 (16%), Positives = 11/18 (61%)

Query: 18  RKLQMMRQRQIAVQTLQR 35
           +  + ++ ++I +  +QR
Sbjct: 796 KAYKKLQDQRIGLSVIQR 813


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,577,688
Number of extensions: 75362
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 16
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)