RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12694
         (112 letters)



>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 25.8 bits (56), Expect = 1.6
 Identities = 3/19 (15%), Positives = 11/19 (57%)

Query: 18  RKLQMMRQRQIAVQTLQRA 36
           +  + ++ ++I +  +QR 
Sbjct: 748 KAYKKLQDQRIGLSVIQRN 766


>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
          TrwB {Escherichia coli [TaxId: 562]}
          Length = 433

 Score = 25.3 bits (54), Expect = 2.0
 Identities = 6/40 (15%), Positives = 17/40 (42%)

Query: 4  GRNKFGPMYKRDRARKLQMMRQRQIAVQTLQRASPYMIGD 43
          G+ +FG    +   R  +++   ++   T ++A    +  
Sbjct: 2  GQGEFGGAPFKRFLRGTRIVSGGKLKRMTREKAKQVTVAG 41


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 24.2 bits (52), Expect = 4.3
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 12  YKRDRARKLQMMRQRQIAVQTLQRASPYMIGDG 44
            K+ +A+  ++  Q++ A +     +   IG G
Sbjct: 285 MKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWG 317


>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein
          mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 80

 Score = 22.6 bits (48), Expect = 8.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 54 TSPYGNLYIKQEIQIPQ 70
             YGNL IK  I+ P+
Sbjct: 64 YGGYGNLIIKFTIKDPE 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,659
Number of extensions: 14454
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 7
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.8 bits)