BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12695
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
+ CPS C C TV C K+ ++P + TQVL L DN L+ F +L L
Sbjct: 9 SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL 64
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDF 142
LDL NQ+ +P+ + D + +L +L L+ N ++ I AF N+ L N D
Sbjct: 65 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 124
Query: 143 ACS 145
ACS
Sbjct: 125 ACS 127
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
CPS C C TV C K+ ++P + TQVL L DN L+ F +L L
Sbjct: 3 CPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDFAC 144
LDL NQ+ +P+ + D + +L +L L+ N ++ I AF N+ L N D AC
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118
Query: 145 S 145
S
Sbjct: 119 S 119
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
CPS C C TV C K+ ++P + TQVL L DN L+ F +L L
Sbjct: 3 CPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTR 58
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDFAC 144
LDL NQ+ +P+ + D + +L +L L+ N ++ I AF N+ L N D AC
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCAC 118
Query: 145 S 145
S
Sbjct: 119 S 119
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ TAE E +T SCRA+GSP P I W K+I +YI+K N + LT
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 61
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
+ + SD G Y CRA N AGE
Sbjct: 62 VRNIINSDGGPYVCRATNKAGE 83
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
T EN VTL C A G P+P+I W K + + G +++ R +K + S+L I
Sbjct: 105 TTYENGQVTLVCDAEGEPIPEITW--KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHI 161
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
V +SDSG Y C A + G ++ L++
Sbjct: 162 KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ TAE E +T SCRA+GSP P I W K+I +YI+K N + LT
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 155
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
+ + SD G Y CRA N AGE
Sbjct: 156 VRNIINSDGGPYVCRATNKAGE 177
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
++ E+ + CR + SP P + W++ + + IS M + +NL I+ +
Sbjct: 15 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM----------LANNNLQILNI 64
Query: 218 TMSDSGIYTCRAK-NGAGEV-FTNISLNVIKVETAVAQPDPVY 258
SD GIY C + GE+ F +I + ++ V A++ P +
Sbjct: 65 NKSDEGIYRCEGRVEARGEIDFRDI-IVIVNVPPAISMPQKSF 106
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ TAE E +T SCRA+GSP P I W K+I +YI+K N + LT
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 251
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
+ + SD G Y CRA N AGE
Sbjct: 252 VRNIINSDGGPYVCRATNKAGE 273
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
++ E+ + CR + SP P + W++ + + IS M + +NL I+ +
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM----------LANNNLQILNI 160
Query: 218 TMSDSGIYTCRAKNGA-GEV-FTNISLNVIKVETAVAQPDPVY 258
SD GIY C + A GE+ F +I + ++ V A++ P +
Sbjct: 161 NKSDEGIYRCEGRVEARGEIDFRDI-IVIVNVPPAISMPQKSF 202
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 160 NENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E+ +C A G P I W EKII+ ++ +++ S LTI
Sbjct: 19 GESKFFTCTAIGEP-ESIDWYNPQGEKIIST----------QRVVVQKEGVRSRLTIYNA 67
Query: 218 TMSDSGIYTCRAKNGAGE 235
+ D+GIY C+A + G+
Sbjct: 68 NIEDAGIYRCQATDAKGQ 85
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKRQYII 203
+P IR DVT + E LSC+ G P+P IKW F +++I + R+Y +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS----------RKYKM 56
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
+ LT++ D G+YTC A N GEV T+ L
Sbjct: 57 SSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
A CPS C C TV C++K ++P + Q+L L DN L+ F LINL
Sbjct: 11 AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINL 66
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFAC 144
EL L NQ+ +P + DS+ +L L L N + + F + L E F C
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK-ELFMC 120
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVE 91
C + C GK+ V C+ K+ ++P + T+ LDL L TFR L L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
L+L YNQ+Q + + + D + EL L L+ N + + F ++ +L+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
F +L L EL L+ NQ+Q +P+ D + L+ L LS N +Q + H AF + KL
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
F KL NL L LS NQ+Q VP D + +L+ + L GN
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT----FRKLINL 89
+CP+ C C+ TV C + IP + + T L L+DN L R + F +L +L
Sbjct: 1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
V+L+L NQ+ + + + ++EL+L N I++I+++ F+ + +L
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVE 91
C + C GK+ V C+ K+ ++P + T+ LDL L TFR L L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
L+L YNQ+Q + + + D + EL L L+ N + + F ++ +L+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
F +L L EL L+ NQ+Q +P+ D + L+ L LS N +Q + H AF + KL
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
F KL NL L LS NQ+Q VP D + +L+ + L GN
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR----QY 201
P IR + T E +V L C A G+P P+I W K IAN N R QY
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN--------NDRYQVGQY 481
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
+ + +S L I +V +D G+Y C AK+ G + LNV + + Q + +VA
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY-IRQMEKKAIVA 540
Query: 262 SLTTVVT 268
T +VT
Sbjct: 541 GETLIVT 547
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 157 AEENENVTLSCRATGSPVP-KIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
A+ + +TL C G +P I W + I+ ++ + + +R + LTI
Sbjct: 631 AQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV---------LTI 681
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
AV S +G +TC A+N AG LNV
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D + + + C+A G P P++ W +K + + ++ K I +L
Sbjct: 723 DKAFAQGSDAKVECKADGFPKPQVTW---KKAVGDTPGEYKDLKKSDNIRVEEGTLH--- 776
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ + ++ G Y C A NG G + +
Sbjct: 777 VDNIQKTNEGYYLCEAINGIGSGLSAV 803
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD--- 221
+ C+A+G+P+P+I WI + GL + I+S L D
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGL----------RQISSDGKLVFPPFRAEDYRQ 108
Query: 222 ---SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQ 253
+ +Y C A+N G + IS +V V VAQ
Sbjct: 109 EVHAQVYACLARNQFGSI---ISRDV-HVRAVVAQ 139
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P T + +C+ TG+P+ + W+ K I +S S L
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-------------------HSESVL 391
Query: 213 TIVAVTMSDSGIYTCRAKN 231
I +V D G+Y C +N
Sbjct: 392 RIESVKKEDKGMYQCFVRN 410
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
CPS C C TV C ++ T++P + T LDL N L D T
Sbjct: 1 CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56
Query: 83 ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F KL +L L+LS NQ+Q +P+ + D + +L+EL L+ N +Q +
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 128 HEAFINVPKL 137
F + +L
Sbjct: 117 DGVFDKLTQL 126
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
F KL L +L L NQ++ VP + D + L+ + L NP
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 38/208 (18%)
Query: 70 VLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI------ 123
V++ + ++R F L +LVEL+L++N + +P + + L EL L NP
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308
Query: 124 ---------------------QKITHEAFINVPKLNLEDFACS-PNIRPITPDVTAEENE 161
H + +++ F CS P I D+ E
Sbjct: 309 LWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGR 368
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
L CR P+ +KW+ + + +S R I +N L V +SD
Sbjct: 369 MAELKCRT--PPMSSVKWLLPNGTVLSHAS-------RHPRISVLND-GTLNFSHVLLSD 418
Query: 222 SGIYTCRAKNGAGEVFTNISLNVIKVET 249
+G+YTC N AG + LNV T
Sbjct: 419 TGVYTCMVTNVAGNSNASAYLNVSTAGT 446
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
CPS C C + K V+C + + +P+ + T+ L+L +N + TFR L +L
Sbjct: 46 CPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 92 LDLSYNQIQ------------------------FVPSHILDSILELRELKLSGNPIQKIT 127
L L N I+ +PS + + +LREL L NPI+ I
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 128 HEAFINVPKLNLEDFA 143
AF VP L D
Sbjct: 164 SYAFNRVPSLMRLDLG 179
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C+ NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 12 TYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 72 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
NF+ F++ I L EL L NQ++ VP I D + L+++ L NP
Sbjct: 191 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 40 ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSY 96
+C K G T C+ IP+ L T+VL+ S NFL TF +LINL+ LDL+
Sbjct: 6 KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTR 65
Query: 97 NQIQFVPSHILDSILELRELKLSGNPI 123
QI +V S +L + L+GNP+
Sbjct: 66 CQINWVHEDTFQSHHQLNTIVLTGNPL 92
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 45 GGKETVLCKAKNFTTIPEQLDVGTQ---VLDLSDNFLDRYTFRKLINL--VELDLSYNQI 99
G E ++ + N +I +Q G + LDLS N L + L +L + L+++ N I
Sbjct: 475 GSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNI 534
Query: 100 QFVPSHILDSILELRELKLSGNPI 123
+ +P H+L ++ + + LS NP+
Sbjct: 535 RIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
CP CEC + VLC K F +PE + T++LDL N L++ F +L E
Sbjct: 3 CPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143
L+L+ N + V +++ LR L L N ++ I F + L D +
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 67/185 (36%), Gaps = 40/185 (21%)
Query: 81 YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI----------------- 123
Y FR L L L++S NQ+ + + S+ L L L NP+
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349
Query: 124 -----------QKITHEAFINVPKLNLED-FACS-PNIRP-ITPDVTAEENENVTLSCRA 169
+ + + F + P + L + F C IR V +E V CRA
Sbjct: 350 FNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRA 409
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
G P P I W+ K + + S N R T+ L + + D+G Y C A
Sbjct: 410 DGDPPPAILWLSPRKHLVSAKS-----NGRL----TVFPDGTLEVRYAQVQDNGTYLCIA 460
Query: 230 KNGAG 234
N G
Sbjct: 461 ANAGG 465
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
A CPS C C + V C+ ++P + Q L L++N L+ F L+NL
Sbjct: 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNL 59
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+L + N++ +P+ + D + +L +L L+ N ++ I AF N+ L
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 12 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 72 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
NF+ F++ I L EL L NQ++ VP I D + L+++ L NP
Sbjct: 191 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 236
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 73 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
NF+ F++ I L EL L NQ++ VP I D + L+++ L NP
Sbjct: 192 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 13 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 73 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
NF+ F++ I L EL L NQ++ VP I D + L+++ L NP
Sbjct: 192 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 237
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
NF+ F++ I L EL L NQ++ VP I D + L+++ L NP
Sbjct: 190 NFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----------RY--- 81
CP+ C C + + V+C + +P + V T+ L+L +N + R+
Sbjct: 6 CPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 82 --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F L +L L+L N++ VP+ + + +LREL L NPI+ I
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 128 HEAFINVPKLNLEDFA 143
AF VP L D
Sbjct: 124 SYAFNRVPSLRRLDLG 139
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 39/196 (19%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ------------- 124
++R F L +L EL+LS+N + +P + + L + L+ NP
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLK 276
Query: 125 -----KITHEAFINVP---------KLNLEDFAC-SPNIRPITPDVTAEENENVTLSCRA 169
T A + P +L+ F C +P I D+ E L CR
Sbjct: 277 ETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR- 335
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCR 228
TG+ + + W+ + M Y ++ ++ L VT+ D+G YTC
Sbjct: 336 TGTSMTSVNWLTPNGTL---------MTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCM 386
Query: 229 AKNGAGEVFTNISLNV 244
N AG + +LNV
Sbjct: 387 VTNSAGNTTASATLNV 402
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 26 TGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD------ 79
TG Q CPS C C + K V+C KN +P+ + T++L+L +N +
Sbjct: 29 TGSAQT---CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS 83
Query: 80 ----RY-----------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL 118
R+ F L NL L+L N++ +P+ + +L+EL L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 119 SGNPIQKITHEAFINVPKLNLEDFA 143
NPI+ I AF +P L D
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLG 168
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP-------------IQ 124
++R F L +LVE++L++N + +P + + L + L NP I+
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK 305
Query: 125 KITHE-----AFINVP---------KLNLEDFAC-SPNIRPITPDVTAEENENVTLSCRA 169
+ A N P +L+ F C +P I D+ E L CRA
Sbjct: 306 DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA 365
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCR 228
+ S + + WI + M Y ++ + S L VT+ D+G+YTC
Sbjct: 366 STS-LTSVSWITPNGTV---------MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCM 415
Query: 229 AKNGAGEVFTNISLNV 244
N G + +LNV
Sbjct: 416 VSNSVGNTTASATLNV 431
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 70 VLDLSDNFLDRYT---FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
LDLS L++ + F L +L L+++ NQ++ VP I D + L+++ L NP
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
F L NL+ LD+S+ + + I + + L LK++GN Q+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
L + F KL NL ELDLSYNQ+Q +P + D + +L++L+L N ++ + F
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 45 GGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT-------------------FRK 85
G K + K T + + G Q+ L + D+ T F K
Sbjct: 72 GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 86 LINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L NL L+L++NQ+Q +P + D + L EL LS N +Q + F + +L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 79 DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF---INVP 135
D ++L NL L L+ NQ+Q +P+ + D + L+EL L N +Q + F N+
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 136 KLNL 139
LNL
Sbjct: 137 YLNL 140
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 71 LDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
LDLS N L F KL L +L L NQ++ VP + D + L+ + L NP
Sbjct: 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
F L NL+ LD+S+ + + I + + L LK++GN Q+
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----------RY--- 81
CP+ C C + + V+C + +P + V T+ L+L +N + R+
Sbjct: 6 CPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 82 --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F L +L L+L N++ VP+ + + +LREL L NPI+ I
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 128 HEAFINVPKLNLEDFA 143
AF VP L D
Sbjct: 124 SYAFNRVPSLRRLDLG 139
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
++R F L +L EL+LS+N + +P + + L + L+ NP
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C NF IP+ L T+ LDLS N L Y+F L LDLS +IQ +
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
S+ L L L+GNPIQ + AF + L
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
F L NL+ LD+S+ + + I + + L LK++GN Q+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK--RQYIIKTI--NSLSNLTIVAV 217
+V L C A GSPVP+I+W F+ + +I S L + + R +I T ++ S ++I +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 218 TMSDSGIYTCRAKN 231
D+G Y CRA N
Sbjct: 98 VEEDTGTYECRASN 111
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
A +P+ + ++ N TL C+ TG P P +KW + K I I+ GL +Y
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYR 53
Query: 203 IKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I+ L I +VT D+ +Y RA N G V SL V
Sbjct: 54 IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK--RQYIIKTI--NSLSNLTIVAV 217
+V L C A GSPVP+I+W F+ + +I S L + + R +I T ++ S ++I +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 218 TMSDSGIYTCRAKN 231
D+G Y CRA N
Sbjct: 98 VEEDTGTYECRASN 111
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E T +G PVP++ W ++I+ +S L + I + + LTI AVT
Sbjct: 19 EGSTATFEAHISGFPVPEVSWFRDGQVIS--TSTLPGVQ-----ISFSDGRAKLTIPAVT 71
Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
++SG Y+ +A NG+G+ + L ++K ETA
Sbjct: 72 KANSGRYSLKATNGSGQATSTAEL-LVKAETA 102
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
PN +T + V L R TG P P +K+ +++ A I S L + I
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKF-YRDG--AEIQSSL------DFQISQ 154
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
L +L I DSG Y+ A N G + L +++ ET
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL-LVQGET 197
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E T +G PVP++ W ++I+ +S L + I + + LTI AVT
Sbjct: 19 EGSTATFEAHISGFPVPEVSWFRDGQVIS--TSTLPGVQ-----ISFSDGRAKLTIPAVT 71
Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
++SG Y+ +A NG+G+ + L ++K ETA
Sbjct: 72 KANSGRYSLKATNGSGQATSTAEL-LVKAETA 102
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
PN +T + V L R TG P P +K+ +++ A I S L + I
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKF-YRDG--AEIQSSL------DFQISQ 154
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L +L I DSG Y+ A N G + L V
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
A +P+ + ++ N TL C+ TG P P +KW + K I I+ GL +Y
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYR 53
Query: 203 IKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I+ L I +VT D+ +Y RA N G V SL V
Sbjct: 54 IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 54 AKNFTTIPEQLDVGTQV--LDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILD 108
FT +P++L + +DLS+N L +F + L+ L LSYN+++ +P D
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSP-----NIRPITPDVTAEENENV 163
+ LR L L GN I + AF ++ L+ +P N++ ++ V +E E
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPG 159
Query: 164 TLSCRATGSPVPKI 177
C G K+
Sbjct: 160 IARCAGPGEMADKL 173
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 133 NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
NV K L F PN I D+ E+V C+A G P P +W+ +G
Sbjct: 284 NVAKGQL-TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---------KNG 333
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + + I+ L I V +SD+G+Y C A+N G +F++ L+VI
Sbjct: 334 DPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
V AE+ V L C A G+PVP I W + +A +R S L I
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRAD------GKPIARKARRH------KSNGILEI 262
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE-TAVAQPDPVYLV 260
D+G Y C A+N G+ NV K + T AQP+ V ++
Sbjct: 263 PNFQQEDAGSYECVAENSRGK-------NVAKGQLTFYAQPNWVQII 302
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E + V LSC G+P P I+W N + M+ R ++ ++N
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKL------NGTDVDIGMDFRYSVVDGSLLINNPN----K 71
Query: 219 MSDSGIYTCRAKNGAGEVFT 238
D+G Y C A N G + +
Sbjct: 72 TQDAGTYQCIATNSFGTIVS 91
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 133 NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
NV K L F PN I D+ E+V C+A G P P +W+ +G
Sbjct: 283 NVAKGQL-TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---------KNG 332
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + + I+ L I V +SD+G+Y C A+N G +F++ L+VI
Sbjct: 333 DPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
V AE+ V L C A G+PVP I W + +A +R S L I
Sbjct: 214 VPAEKGTTVKLECFALGNPVPTILWRRAD------GKPIARKARRH------KSNGILEI 261
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE-TAVAQPDPVYLV 260
D+G Y C A+N G+ NV K + T AQP+ V ++
Sbjct: 262 PNFQQEDAGSYECVAENSRGK-------NVAKGQLTFYAQPNWVQII 301
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E + V LSC G+P P I+W N + M+ R ++ ++N
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKL------NGTDVDIGMDFRYSVVDGSLLINNPN----K 70
Query: 219 MSDSGIYTCRAKNGAGEVFT 238
D+G Y C A N G + +
Sbjct: 71 TQDAGTYQCIATNSFGTIVS 90
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 41 CKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYN 97
C K +T C+ + IP+ L T+ L+ S NFL TF +L+NL LDL+
Sbjct: 5 CIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRC 64
Query: 98 QIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK 136
QI ++ S +L L L+GNP+ + E +N PK
Sbjct: 65 QINWIHEDTFQSHHQLSTLVLTGNPLIFMA-ETSLNGPK 102
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 83 FRKLINLVELDLSYNQIQFVP--SHILDSILELRELKLSGNPIQKITHEAFINVPKLNLE 140
KL NL LDLS+N I+ S L ++ L+ L LS N + +AF P+L L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 141 DFA 143
D A
Sbjct: 403 DLA 405
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P+ + ++ N TL C+ TG P P +KW + K I I+ GL +Y I+
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYRIQ 53
Query: 205 TI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L I +VT D+ +Y RA N G V SL V
Sbjct: 54 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 94
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D+T +E + + C+ +G P P + W K + S+ + +++ N + +L
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA-------HKMLVRE-NGVHSLI 69
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I VT D+GIYTC A N AG+ ++ L V E+
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR---QYIIKTINSLS 210
DV ENE++ L+C +G P+++W K + ++ L N + Y + S S
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEW----KFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+T +VT D+G YTC G+ + +S+++
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 171 GSPVPKIKWIFKEKI---IANISSGLANMNKRQYIIKTINSLS-NLTIVAVTMSDSGIYT 226
GSP + W FK+ I A+ A MN TI+ S +L VT DSG Y
Sbjct: 131 GSPPSEYSW-FKDGISMLTADAKKTRAFMNSS----FTIDPKSGDLIFDPVTAFDSGEYY 185
Query: 227 CRAKNGAGEVFTNISLNVIKVETAVA 252
C+A+NG G + + ++ VE V
Sbjct: 186 CQAQNGYGTAMRSEAAHMDAVELNVG 211
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
DV A +NVTL C A G+PVP I+W K++ + S A ++ ++K N
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRW---RKVLEPMPS-TAEISTSGAVLKIFN------ 171
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
+ + D GIY C A+N G+
Sbjct: 172 ---IQLEDEGIYECEAENIRGK 190
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + D++ +E + +T++C TG P P++ W + I + G ++ I+
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG-------RFHIEN 60
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ L+ L I+ V D G+YT N G +++++
Sbjct: 61 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + D++ +E + +T++C TG P P++ W + I + G ++ I+
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG-------RFHIEN 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ L+ L I+ V D G+YT N G +++++
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P+ + D E ++ L C G+PVP+I W+ + I QY
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-------------QYARS 57
Query: 205 TINS-LSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
T + ++ L I D G YTC A+N G+V
Sbjct: 58 TCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L + F KL +L EL L NQ++ VP D + EL+ LKL N ++++ AF ++ KL
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 138 NLEDFACSP 146
+ +P
Sbjct: 208 KMLQLQENP 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 41 CKWKGG-------KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY---TFRKLINLV 90
CK GG K +V C +K T IP + T+ LDL N L F +L L
Sbjct: 5 CKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLR 64
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI---THEAFINVPKLNLE 140
L L+ N++Q +P+ I + L L ++ N +Q + + +N+ +L L+
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 48 ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR--------YTFRKLINLVELDLSYNQI 99
ET+ +P + V Q+++L++ LDR F L L L L YN++
Sbjct: 88 ETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 100 QFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
Q +P + D + L+EL+L N ++++ AF + +L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 71 LDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
L L +N L R F KL L L L NQ++ VP DS+ +L+ L+L NP
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
V A E +TL C+ G+P +I W +KE + S A Y ++ N++++L I
Sbjct: 15 VEAAIGEPITLQCKVDGTPEIRIAW-YKEH--TKLRSAPA------YKMQFKNNVASLVI 65
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
V SD G YTC+A+N G V ++ L VIK
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVL-VIK 96
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 119 SGNPIQKITHEAFINVPKLNLEDFACSP--NIRPITPDVTAEENENVTLSCRATGSPVPK 176
+ NP+ + A KL L + P +++P++ D+ E+ T C TG+ K
Sbjct: 176 ASNPLGTASSSA-----KLTLSEHEVPPFFDLKPVSVDLAL--GESGTFKCHVTGTAPIK 228
Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
I W + I G Y + + + + LT++ VT D+G YTC A N AG+
Sbjct: 229 ITWAKDNR---EIRPG------GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Query: 237 FTNISLNVIKVETAVAQPDPVYLV 260
+ L V + + + +P +V
Sbjct: 280 SCSAQLGVQEPPRFIKKLEPSRIV 303
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
I+ + P +++E+ C+ GSP K+ W E I S ++ + +
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---------KFRMSFVE 344
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S++ L + +++ DSG YTC A N AG ++ SL V + +P PV
Sbjct: 345 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 127 THEAFINVPKLNL--ED---FACSPNIRPITPDVT-AEENENVTLSCRATGSPVPKIKWI 180
T F +LNL ED FA P+I+ P T A + VTL C A G+PVP+IKW
Sbjct: 184 TKSVFSKFAQLNLAAEDTRLFA--PSIKARFPAETYALVGQQVTLECFAFGNPVPRIKW- 240
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
K+ ++S + + L I +V+ D G Y C A+N G
Sbjct: 241 --RKVDGSLSP------------QWTTAEPTLQIPSVSFEDEGTYECEAENSKG 280
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED---FAC-------------------SPNI 148
++ R++ S +P Q T E + +P ++ ED + C P
Sbjct: 238 IKWRKVDGSLSP-QWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEW 296
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
+ D A+ N+ C A G P P ++W+ LA+ N+ + +
Sbjct: 297 LKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRN-------GEPLASQNRVEVLA----- 344
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+L +++ DSG+Y C A+N G ++ + L V
Sbjct: 345 -GDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
E V L+CRA SP +W N + R ++ NL I+ T +
Sbjct: 22 EQVLLACRARASPPATYRWKM------NGTEMKLEPGSRHQLVG-----GNLVIMNPTKA 70
Query: 221 -DSGIYTCRAKNGAGEV 236
D+G+Y C A N G V
Sbjct: 71 QDAGVYQCLASNPVGTV 87
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
T EN VTL C A G P+P+I W K + + G +++ R +K + S+L I
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITW--KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHI 67
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
V +SDSG Y C A + G ++ L++
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + D + E ++V +S R G P P + W+ + + ++R++ +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--------RPDQRRFAEEA 57
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
L L I+A D+G YTC+A N G
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYG 86
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
T EN VTL C A G P+P+I W K + + G +++ R +K + S+L I
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITW--KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHI 67
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
V +SDSG Y C A + G ++ L++
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 41/203 (20%)
Query: 77 FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI---------QKIT 127
F+ F L L+LS+N ++ + + L L+EL LSGNP+ Q+
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWE 128
Query: 128 HEAFINVPKLNLE-----------DFACS-PNIRPITPDVTAEENENVTLSCRATGSPVP 175
E VP+ L+ + +C P ++ P+ + + ++V L C+ G +
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE 188
Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS-NLTIVAVTMS-DSGIYTCRAKNGA 233
+ WI E + + ++K+ S LT+ VT + TC A+N
Sbjct: 189 QAGWILTE------------LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV 236
Query: 234 GEVFTNISLNV-----IKVETAV 251
G ++ +NV +++ TAV
Sbjct: 237 GRAEVSVQVNVSFPASVQLHTAV 259
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 31/117 (26%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY----------- 81
A CPS C C TV C+ ++ ++P + TQVL L N + +
Sbjct: 11 AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQL 66
Query: 82 ----------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
F KL L L L NQ++ +P + D++ L + L NP
Sbjct: 67 TYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
+ ++ ++VT+ C+ TG P P + W K +S G A + S L I
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP---LSGGRATVTD-----------SGLVI 364
Query: 215 VAVTMSDSGIYTCRAKNGAGEVF 237
V D G Y CRA N G+ +
Sbjct: 365 KGVKNGDKGYYGCRATNEHGDKY 387
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + +++ +E + + +G P P + W + + S L M I +
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ--SDDLHKM------IVS 57
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
L +L V SD+G Y C AKN AGE + L+V+ E
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
++ A E+ ++ C +G PVP + W+ ++ Y I SNL
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI----------PSDYF--QIVGGSNLR 368
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
I+ V SD G Y C A+N AG ++ L V K
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+V A E ++ L C +G P P W+ E++I + ++Y ++ SNL
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI--------QLRSKKY---SLLGGSNLL 278
Query: 214 IVAVTMSDSGIYTC 227
I VT DSG YTC
Sbjct: 279 ISNVTDDDSGTYTC 292
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
T +TA + V L C G P+P I W ++ + I + R ++ +
Sbjct: 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPG-----DSRVVVLPS----GA 178
Query: 212 LTIVAVTMSDSGIYTCRAKNGA 233
L I + DSG+Y C A+N A
Sbjct: 179 LQISRLQPGDSGVYRCSARNPA 200
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
L EDF P I D+ + E TL+C+A G P P I+W K + + +
Sbjct: 3 LRQEDFP--PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY---KGGERVETDKDDP 57
Query: 197 NKRQYIIKTINSLSNLTIVAVTMS--DSGIYTCRAKNGAGEVFT-NISLNV 244
+ ++ + SL L IV S D G+Y C A+N GE + + SL V
Sbjct: 58 RSHRMLLPS-GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFK 182
+ ++H+A + V L +DF +P+ DV E + C+ G P P I W
Sbjct: 97 EAVSHDASLEVAILR-DDFRQNPS------DVMVAVGEPAVMECQPPRGHPEPTISW--- 146
Query: 183 EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241
S L + ++R I L I SD+G Y C N GE + ++
Sbjct: 147 ----KKDGSPLDDKDERITI-----RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVA 196
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L + F KL NL LDL NQ+Q +P + D + +L++L L+ N ++ + F + L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 138 -------NLEDFACS 145
N D ACS
Sbjct: 208 THIWLLNNPWDCACS 222
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Query: 28 CLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT----- 82
+Q P+ G K + K T + + G Q+ L + D+ T
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Query: 83 --------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
F KL NL L L +NQ+Q +P + D + L L L N +Q +
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 129 EAFINVPKL 137
F + +L
Sbjct: 175 GVFDKLTQL 183
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
P+ + D A+ ++ SC A+G P P ++W+ LA+ N+ +
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL-------RDGQPLASQNRIEV-- 343
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S L + + DSG+Y C A+N G V+ + L V
Sbjct: 344 ----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 123 IQKITHEAFINVPKLNL--EDF-ACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIK 178
I IT F +L+L ED +P+I+ P D A + VTL C A G+PVP+IK
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
W K+ + +S K ++S L I V D G Y C A+N G
Sbjct: 241 W---RKLDGSQTS------------KWLSSEPLLHIQNVDFEDEGTYECEAENIKG 281
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ P+ +AEE VTL+CRA +P +W N + + R ++ +S
Sbjct: 15 LFPEGSAEEK--VTLTCRARANPPATYRWKM------NGTELKMGPDSRYRLVAGDLVIS 66
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFT---NISLNVIKVETAVAQPDPVYLVASLTTVV 267
N V D+G Y C A N G V + ++ ++ E + + DPV + +
Sbjct: 67 N----PVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ-EFSAEERDPVKITEGWGVMF 121
Query: 268 T 268
T
Sbjct: 122 T 122
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
+++P++ D+ E+ T C TG+ KI W + I + Y + +
Sbjct: 9 DLKPVSVDLAL--GESGTFKCHVTGTAPIKITWAKDNREIRPGGN---------YKMTLV 57
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
+ + LT++ VT D+G YTC A N AG+ + L V + + + +P +V
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
I+ + P +++E+ C+ GSP K+ W E I S ++ + +
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---------KFRMSFVE 152
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S++ L + +++ DSG YTC A N AG ++ SL V + +P PV
Sbjct: 153 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 136 KLNLEDFACSPNIRPITP------DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI 189
++N +D N+ P + TA ++VTL C A G P P + W + I N
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN- 239
Query: 190 SSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ ++I + S LTI V +D Y C A+N AGE +I L V
Sbjct: 240 ----EEEDDEKHIFS--DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P I + T E++ +SC A+G+P P+I W FK+ SG+ ++K
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDSGI--------VLK 60
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRA 229
N NLTI V D G+YTC+A
Sbjct: 61 DGN--RNLTIRRVRKEDEGLYTCQA 83
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 32/113 (28%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR----YTFRKLINLV 90
CP+ C C + C + +P+ L T +LDLS N L R +T +L NL
Sbjct: 12 CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143
L LS+N + F+ S EAF+ VP L D +
Sbjct: 68 SLLLSHNHLNFISS------------------------EAFVPVPNLRYLDLS 96
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
+++P++ D+ E+ T C TG+ KI W + I + Y + +
Sbjct: 9 DLKPVSVDLAL--GESGTFKCHVTGTAPIKITWAKDNREIRPGGN---------YKMTLV 57
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + LT++ VT D+G YTC A N AG+ + L V
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
I+ + P +++E+ C+ GSP K+ W E I S ++ + +
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESS---------KFRMSFVE 152
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S++ L + +++ DSG YTC A N AG ++ SL V + +P PV
Sbjct: 153 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P IR + T + LSC ATGSPVP I W +++ S
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-------------R 55
Query: 206 INSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
I L N L I + D+G YTC A +GE + + V + V P P
Sbjct: 56 IKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRP 108
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224
L C+ATG P+P I W+ KE + R TI L I + +SD+G
Sbjct: 28 LKCKATGDPLPVISWL-KEGFT------FPGRDPR----ATIQEQGTLQIKNLRISDTGT 76
Query: 225 YTCRAKNGAGEVFTNISLNVIK 246
YTC A + +GE + L+V +
Sbjct: 77 YTCVATSSSGETSWSAVLDVTE 98
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P I + T E++ +SC A+G+P P+I W FK+ SG+ ++K
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDSGI--------VLK 716
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRA 229
N NLTI V D G+YTC+A
Sbjct: 717 DGN--RNLTIRRVRKEDEGLYTCQA 739
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNG 232
LS LTI VT SD G+YTC A +G
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSG 312
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAV 217
E VT +CR G+P PKI W K I+ S Y I + ++ +L A
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD--------HYTIQRDLDGTCSLHTTAS 72
Query: 218 TMSDSGIYTCRAKNGAGEV 236
T+ D G YT A N G V
Sbjct: 73 TLDDDGNYTIMAANPQGRV 91
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 131 FINVPKLNLE-DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI 189
F++ PK N + +P+I E ++ + C++ G P P+ W KE +
Sbjct: 77 FVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN---GV 133
Query: 190 SSGLANMNKRQYIIKTINSLSNLTIVAVTMS-DSGIYTCRAKNGAGEVFTNISLNV 244
++N + R +II N + L IV + ++ D G Y C A N G + L V
Sbjct: 134 FEEISNSSGRFFIINKEN-YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE----KIIANISSGLANMNKRQYIIKTINS 208
P+V EN V LSC +G P+++W F + +++ + A+ R + T
Sbjct: 11 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT--- 67
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+T +VT D+G YTC G + + + +I
Sbjct: 68 --GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 102
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
R T + TA +++VTL+C A G P P + W + I N+ +Y
Sbjct: 17 RQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQ------EDNEEKYSFNY--D 68
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S L I V SD Y C A+N AGE I L V
Sbjct: 69 GSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVF 105
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
L EDF P I D+ + E TL+C+A G P P I+W K + + +
Sbjct: 3 LRQEDFP--PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY---KGGERVETDKDDP 57
Query: 197 NKRQYIIKTINSLSNLTIVAVTMS--DSGIYTCRAKNGAGEVFTN 239
+ ++ + SL L IV S D G+Y C A+N GE ++
Sbjct: 58 RSHRMLLPS-GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAV 217
E VT +CR G+P PKI W K I+ S Y I + ++ +L A
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD--------HYTIQRDLDGTCSLHTTAS 73
Query: 218 TMSDSGIYTCRAKNGAGEV 236
T+ D G YT A N G +
Sbjct: 74 TLDDDGNYTIMAANPQGRI 92
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C + + +P+ + T+ +DLS N L Y+F L LDLS +I+ +
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ L L L+GNPIQ + +F + L
Sbjct: 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRE-------LKLSGNPIQKITHEAF--IN 133
F L NLV +DLSYN IQ + ++ + LRE L +S NPI I +AF I
Sbjct: 149 FSNLTNLVHVDLSYNYIQTIT---VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Query: 134 VPKLNLEDFACSPNI 148
+ +L L S NI
Sbjct: 206 LHELTLRGNFNSSNI 220
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D T + C+ATG P P+I W+ K K +++ + + + I L
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR--- 71
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
D IY C A N GE+ T+ L+V++ E
Sbjct: 72 ----VQRDEAIYECTATNSLGEINTSAKLSVLEEE 102
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E+ T+ C A G+P P+I W FK+ + + A N R IK + S L I +
Sbjct: 121 EKARTATMLCAAGGNPDPEISW-FKDFLPVDP----ATSNGR---IKQLRS-GALQIESS 171
Query: 218 TMSDSGIYTCRAKNGAGEVFT---NISLNVIKV 247
SD G Y C A N AG ++ N+ + V +V
Sbjct: 172 EESDQGKYECVATNSAGTRYSAPANLYVRVRRV 204
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
++ L C A+G P P I W K + + + N NK L I V+ D
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA------------LRITNVSEED 286
Query: 222 SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
SG Y C A N G + IS+ V + +P
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP 319
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV--AV 217
E+ L CRA G+P P ++W+ + + S N N+ ++ TI+
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEP---LQSAPPNPNRE---------VAGDTIIFRDT 374
Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
+S +Y C N G + N ++V+ V
Sbjct: 375 QISSRAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D + +N+ + C A G+P P W + +M +R + + +
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL-----VIDFR 80
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIK 246
G Y C A+N G +N I L V K
Sbjct: 81 SGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
T C + + +P+ + T+ +DLS N L Y+F L LDLS +I+ +
Sbjct: 10 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 69
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ L L L+GNPIQ + +F + L
Sbjct: 70 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRE-------LKLSGNPIQKITHEAF--IN 133
F L NLV +DLSYN IQ + ++ + LRE L +S NPI I +AF I
Sbjct: 144 FSNLTNLVHVDLSYNYIQTIT---VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 200
Query: 134 VPKLNLEDFACSPNI 148
+ +L L S NI
Sbjct: 201 LHELTLRGNFNSSNI 215
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 129 EAFINVPKLNLEDFACSPNIRPIT--PDV-TAEENENVTLSCRATGSPVPKIKWIFKEKI 185
EA+ +L A R + PDV T +E + + L+C G P P++ W+ EK
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 262
Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+A S N+ + TI V+ +DSG Y KN G ++ +++V
Sbjct: 263 LA--SDDHCNLKFEA------GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE----KIIANISSGLANMNKRQYIIKTINS 208
P+V EN V LSC +G P+++W F + +++ + A+ R + T
Sbjct: 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT--- 68
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+T +VT D+G YTC G + + + +I
Sbjct: 69 --GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 171 GSPVPKIKWIFKEKII--ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228
GSP + W FK+ I+ N S A N Y++ + L ++ SD+G Y+C
Sbjct: 134 GSPPSEYTW-FKDGIVMPTNPKSTRAFSNS-SYVLNP--TTGELVFDPLSASDTGEYSCE 189
Query: 229 AKNGAGEVFTNISLNVIKVE 248
A+NG G T+ ++ + VE
Sbjct: 190 ARNGYGTPMTSNAVRMEAVE 209
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
+T E E+ SC G PVP + W+ K ++++ + ++ + T S I
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA---------RHQVTTTKYKSTFEI 68
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
+V SD G Y+ +N G+ +L + K
Sbjct: 69 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 100
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
+T E E+ SC G PVP + W+ K ++++ + ++ + T S I
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA---------RHQVTTTKYKSTFEI 74
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
+V SD G Y+ +N G+ +L + K
Sbjct: 75 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E T+ C A+G+P P+I W FK+ + + S N N R +++ S+ L I
Sbjct: 121 ERTRTATMLCAASGNPDPEITW-FKDFLPVDTS----NNNGRIKQLRS-ESIGALQIEQS 174
Query: 218 TMSDSGIYTCRAKNGAGEVFT 238
SD G Y C A N AG ++
Sbjct: 175 EESDQGKYECVATNSAGTRYS 195
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D T + C+ATG P PKI W K K ++N + + + I L
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR--- 71
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
T D IY C A N GE+ + L V++
Sbjct: 72 ----TPRDEAIYECVASNNVGEISVSTRLTVLR 100
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D T + + +ATG P P W K I + +K + L
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF---------LE 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I SDSG+YTC KN AG V ++ L +
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
E T C P P+I W + KI L + +Y I+ L LTI++V S
Sbjct: 23 EVATFMCAVESYPQPEISWT-RNKI-------LIKLFDTRYSIRENGQL--LTILSVEDS 72
Query: 221 DSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
D GIY C A NG G + +K++ + +P
Sbjct: 73 DDGIYCCTANNGVGGAVESCGALQVKMKPKITRP 106
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E L C G+P P + WI + + N R ++++ +L I V
Sbjct: 114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRE--------NSRIAVLES----GSLRIHNVQ 161
Query: 219 MSDSGIYTCRAKNGAGEVFTNI 240
D+G Y C AKN G ++ +
Sbjct: 162 KEDAGQYRCVAKNSLGTAYSKL 183
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N TTIP+ L L L N + D + + L NL +L LS+N I V + L +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 113 LRELKLSGNPIQKI 126
LREL L+ N + K+
Sbjct: 242 LRELHLNNNKLVKV 255
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY------------- 81
CP C+C + V C +P+ L T +LDL +N +
Sbjct: 25 CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 82 --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F L+ L L LS NQ++ +P + + L+EL++ N I K+
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVR 137
Query: 128 HEAFINVPKLNLEDFACSP 146
F + ++ + + +P
Sbjct: 138 KSVFNGLNQMIVVELGTNP 156
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N TTIP+ L L L N + D + + L NL +L LS+N I V + L +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 113 LRELKLSGNPIQKI 126
LREL L+ N + K+
Sbjct: 242 LRELHLNNNKLVKV 255
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY------------- 81
CP C+C + V C +P+ L T +LDL +N +
Sbjct: 25 CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 82 --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F L+ L L LS NQ++ +P + + L+EL++ N I K+
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVR 137
Query: 128 HEAFINVPKLNLEDFACSP 146
F + ++ + + +P
Sbjct: 138 KSVFNGLNQMIVVELGTNP 156
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D T + C+ATG P P+I W+ K K +++ + + + I L
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR--- 72
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
D IY C A N GE+ T+ L+V++
Sbjct: 73 ----VQRDEAIYECTATNSLGEINTSAKLSVLE 101
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E+ T+ C A G+P P+I W FK+ + + A N R IK + S L I +
Sbjct: 122 EKGRTATMLCAAGGNPDPEISW-FKDFLPVDP----AASNGR---IKQLRS-GALQIESS 172
Query: 218 TMSDSGIYTCRAKNGAGEVFT 238
SD G Y C A N AG ++
Sbjct: 173 EESDQGKYECVATNSAGTRYS 193
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I D+ E L CR P+ +KW+ + + +S R I
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHAS-------RHPRISV 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+N L V +SD+G+YTC N AG + LNV
Sbjct: 59 LND-GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 96
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----RYTFRKLINLV 90
CP C C+ TV C + IPE + T L L++N F+KL L
Sbjct: 5 CPEKCRCE----GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLR 60
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+++ S N+I + + + E+ L+ N ++ + H+ F + L
Sbjct: 61 KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 129 EAFINVPKLNLEDFACSPNIRPIT--PDV-TAEENENVTLSCRATGSPVPKIKWIFKEKI 185
EA+ +L A R + PDV T +E + + L+C G P P++ W+ EK
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157
Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+A + N + +T + TI V+ +DSG Y KN G ++ +++V
Sbjct: 158 LAQTD----HCNLKFEAGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
SP I D+ ++NE TL+C+ G P P I+W FK+ +S+ ++ Q+ K
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEW-FKDG--EPVSTNEKKSHRVQF--K 63
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
T+ D G Y C AKN G+ +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
SP I D+ ++NE TL+C+ G P P I+W FK+ +S+ ++ Q+ K
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEW-FKDG--EPVSTNEKKSHRVQF--K 63
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
T+ D G Y C AKN G+ +
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
Q L L DN L TFR L NL L L N+I VP H + L L L N + +
Sbjct: 131 QYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVAR 190
Query: 126 ITHEAFINVPKL 137
+ AF ++ +L
Sbjct: 191 VHPHAFRDLGRL 202
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 45 GGKETVLCKAKNFTTIPEQLDVGTQVLD---LSDNFLDR---YTFRKLINLVELDLSYNQ 98
G + ++PE G LD L N + R + FR L L+ L L N
Sbjct: 152 GNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN 211
Query: 99 IQFVPSHILDSILELRELKLSGNP 122
+ +P+ +L + L+ L+L+ NP
Sbjct: 212 LSMLPAEVLVPLRSLQYLRLNDNP 235
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 22/119 (18%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDL 94
CP C C + K T C + +P + +Q + L
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQ---------------------RIFL 38
Query: 95 SYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITP 153
N+I +VP+ S L L L N + I AF + L D + + +R + P
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E T+ C A+G+P P+I W FK+ + + S+ N R IK + S L I +
Sbjct: 121 ERTRTATMLCAASGNPDPEITW-FKDFLPVDPST----SNGR---IKQLRS-GGLQIESS 171
Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
+D G Y C A N AG +++ + ++V T
Sbjct: 172 EETDQGKYECVASNSAGVRYSSPANLYVRVGT 203
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
+ C+ATG P P++ W K K + + ++ + I L T D
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR-------TPRDE 76
Query: 223 GIYTCRAKNGAGEVFTNISLNVIK 246
IY C A+N GEV + L V++
Sbjct: 77 NIYECVAQNPHGEVTVHAKLTVLR 100
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 18/79 (22%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V L CRATG P + +W K I N + S L AV + D+
Sbjct: 36 VKLCCRATGHPFVQYQWFKMNKEIPN------------------GNTSELIFNAVHVKDA 77
Query: 223 GIYTCRAKNGAGEVFTNIS 241
G Y CR N F+ S
Sbjct: 78 GFYVCRVNNNFTFEFSQWS 96
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVE-----RSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 283 LKAK 286
A+
Sbjct: 144 SDAQ 147
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 71 LDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L+LS NFL D F L L LDLSYN I+ + + L+EL L N ++ +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 128 HEAFINVPKL-------NLEDFACSPNIRPITPDVTA-EENENVTLSCRATGSPVPKI 177
F + L N D +C P I ++ + + E + C +G PV I
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSC-PRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 444
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 69 QVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+VLDLS N L +F L NL EL L NQ++ VP I D + L+++ L NP
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK----IIANISSGLANMNKRQYIIKTINSLSNLTI 214
+ EN+TL C G+ V +W + K ++ ++ L +M Y I++I L I
Sbjct: 195 QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDM---PYHIRSI-----LHI 246
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
+ + DSG YTC + ++N+ VE+
Sbjct: 247 PSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P P I W+ + R IK + +L + +V SD
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + +L+V++ P L A L T +L + C +
Sbjct: 85 GNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAGLPANQTAVLGSDVEFHCKVY 139
Query: 283 LKAK 286
A+
Sbjct: 140 SDAQ 143
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V VE + +P L A L + ++ +C +
Sbjct: 89 GNYTCVVENEYGSINHTYHLDV--VERSRHRP---ILQAGLPANASTVVGGDVEFVCKVY 143
Query: 283 LKAK 286
A+
Sbjct: 144 SDAQ 147
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
+T + + V L+C G P I+W+ ++ N+ ++++ +I L++
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI-------GFLSL 64
Query: 215 VAVTMSDSGIYTCRAKNGA 233
+V SD+G Y C+ ++G
Sbjct: 65 KSVERSDAGRYWCQVEDGG 83
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 40 ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSY 96
+C K +T C+ IP L T+ L+ S N L TF +LINL LDL+
Sbjct: 7 KCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTR 66
Query: 97 NQIQFVPSHILDSILELRELKLSGNPI 123
QI ++ S L L L+ NP+
Sbjct: 67 CQIYWIHEDTFQSQHRLDTLVLTANPL 93
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE-----RSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 283 LKAK 286
A+
Sbjct: 136 SDAQ 139
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 127 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 80 GNYTCVVENEYGSINHTYHLDVVE-----RSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 283 LKAK 286
A+
Sbjct: 135 SDAQ 138
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 126 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 183
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 184 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 213
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E T+ C A+G+P P+I W FK+ + + S+ N R IK + S L I +
Sbjct: 121 ERTRTATMLCAASGNPDPEITW-FKDFLPVDPSAS----NGR---IKQLRS-GALQIESS 171
Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
+D G Y C A N AG +++ + ++V+
Sbjct: 172 EETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
+ C+ATG P P++ W K K + + ++ + I L T D
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR-------TPRDE 76
Query: 223 GIYTCRAKNGAGEVFTNISLNVIK 246
+Y C A+N GE+ + L V++
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLR 100
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 162 NVTLSCRATGSPVPKIKWI 180
NV ++C A GSP+P +KW+
Sbjct: 222 NVNITCVAVGSPMPYVKWM 240
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 78
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V VE + +P L A L + ++ +C +
Sbjct: 79 GNYTCVVENEYGSINHTYHLDV--VERSRHRP---ILQAGLPANASTVVGGDVEFVCKVY 133
Query: 283 LKAK 286
A+
Sbjct: 134 SDAQ 137
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 125 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 182
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 183 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 212
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P P I W+ + R IK + +L + +V SD
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSLVMESVVPSDR 192
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + +L+V++ P L A L T +L + C +
Sbjct: 193 GNYTCVVENKFGSIRQTYTLDVLE-----RSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 283 LKAK 286
A+
Sbjct: 248 SDAQ 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------L 209
TA +V C+ P I+W+ + + N S + ++KT + L
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWL--KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
L++ VT D+G YTC A N G + L V+ E
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE-----RWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 283 LKAK 286
A+
Sbjct: 136 SDAQ 139
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 127 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 24/147 (16%)
Query: 146 PNIRPITPDVTAEEN-----------ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
PN P+ P T+ E + V C ++G+P P ++W+ K
Sbjct: 6 PNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEF-------- 57
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
+ R K + ++ + +V SD G YTC +N G + L+V VE + +P
Sbjct: 58 KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV--VERSPHRP 115
Query: 255 DPVYLVASLTTVVTIILTACFVVLCII 281
L A L T+ L + +C +
Sbjct: 116 ---ILQAGLPANKTVALGSNVEFMCKV 139
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTIN------SLSNLTI 214
NV C+ P P I+W+ + I N S G N+ Q I+KT + L +
Sbjct: 132 NVEFMCKVYSDPQPHIQWL--KHIEVNGSKIGPDNLPYVQ-ILKTAGVNTTDKEMEVLHL 188
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
V+ D+G YTC A N G + L V++
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 24/147 (16%)
Query: 146 PNIRPITPDVTAEEN-----------ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
PN P+ P T+ E + V C ++G+P P ++W+ K
Sbjct: 7 PNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEF-------- 58
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
+ R K + ++ + +V SD G YTC +N G + L+V VE + +P
Sbjct: 59 KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV--VERSPHRP 116
Query: 255 DPVYLVASLTTVVTIILTACFVVLCII 281
L A L T+ L + +C +
Sbjct: 117 ---ILQAGLPANKTVALGSNVEFMCKV 140
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTIN------SLSNLTI 214
NV C+ P P I+W+ + I N S G N+ Q I+KT + L +
Sbjct: 133 NVEFMCKVYSDPQPHIQWL--KHIEVNGSKIGPDNLPYVQ-ILKTAGVNTTDKEMEVLHL 189
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
V+ D+G YTC A N G + L V++
Sbjct: 190 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 222
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
+ C+ATG P P++ W K K + + ++ + I L T D
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR-------TPRDE 76
Query: 223 GIYTCRAKNGAGEVFTNISLNVIK 246
+Y C A+N GE+ + L V++
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLR 100
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E T+ C A+G+P P+I W FK+ + + S+ N R IK + S + L I +
Sbjct: 121 ERTRTATMLCAASGNPDPEITW-FKDFLPVDPSA----SNGR---IKQLRSGA-LQIESS 171
Query: 218 TMSDSGIYTCRAKNGAG 234
+D G Y C A N AG
Sbjct: 172 EETDQGKYECVATNSAG 188
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P+P ++W+ K R K N +L + +V SD
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V VE + +P L A L + ++ +C +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV--VERSRHRP---ILQAGLPANASTVVGGDVEFVCKVY 135
Query: 283 LKAK 286
A+
Sbjct: 136 SDAQ 139
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 127 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 72 DLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
DL +D Y F + +L + +N I+++P H+ ++ L L L N + + F
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 132 INVPKLNLEDFACSPNIRPITPDVTAEEN--ENVTLSC-RATGSPVPKIKWIFKEKIIAN 188
N PKL + + N+ I D +N+ LS R T + I +F + N
Sbjct: 138 HNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 196
Query: 189 ISSGLA 194
+ S LA
Sbjct: 197 LLSTLA 202
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
+ C+ATG P P++ W K K + + ++ + I L T D
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLR-------TPRDE 76
Query: 223 GIYTCRAKNGAGEVFTNISLNVIK 246
+Y C A+N GE+ + L V++
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLR 100
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E T+ C A+G+P P+I W FK+ + + S+ N R IK + S + L I +
Sbjct: 121 ERTRTATMLCAASGNPDPEITW-FKDFLPVDPSA----SNGR---IKQLRSGA-LQIESS 171
Query: 218 TMSDSGIYTCRAKNGAG 234
+D G Y C A N AG
Sbjct: 172 EETDQGKYECVATNSAG 188
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 72 DLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
DL +D Y F + +L + +N I+++P H+ ++ L L L N + + F
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143
Query: 132 INVPKLNLEDFACSPNIRPITPDVTAEEN--ENVTLSC-RATGSPVPKIKWIFKEKIIAN 188
N PKL + + N+ I D +N+ LS R T + I +F + N
Sbjct: 144 HNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 189 ISSGLA 194
+ S LA
Sbjct: 203 LLSTLA 208
>pdb|3FFC|D Chain D, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|I Chain I, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 202
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 22/168 (13%)
Query: 148 IRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEK-------IIANISSGLANMNKR 199
I P + +E E VTL C T P + W +K+ +I S N +
Sbjct: 2 ITQTQPGMFVQEKEAVTLDCTYDTSDPSYGLFW-YKQPSSGEMIFVIYQGSYDQGNATEG 60
Query: 200 QYII--KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF---TNISLNVIKVETAVAQP 254
+Y + + +NL I A + DS +Y C + G F T SL VI + P
Sbjct: 61 RYSLNFQKARKSANLVISASQLGDSAMYFCAMREDTGNQFYFGTGTSLTVIP---NIQNP 117
Query: 255 DPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
DP V L + + C + + +DV Y+ DKC
Sbjct: 118 DPA--VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 160
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 24/147 (16%)
Query: 146 PNIRPITPDVTAEEN-----------ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
PN P+ P T+ E + V C ++G+P P ++W+ K
Sbjct: 6 PNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEF-------- 57
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
+ R K + ++ + +V SD G YTC +N G + L+V VE + +P
Sbjct: 58 KPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV--VERSPHRP 115
Query: 255 DPVYLVASLTTVVTIILTACFVVLCII 281
L A L T+ L + +C +
Sbjct: 116 ---ILQAGLPANKTVALGSNVEFMCKV 139
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTIN------SLSNLTI 214
NV C+ P P I+W+ + I N S G N+ Q I+KT + L +
Sbjct: 132 NVEFMCKVYSDPQPHIQWL--KHIEVNGSKIGPDNLPYVQ-ILKTAGVNTTDKEMEVLHL 188
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
V+ D+G YTC A N G + L V++
Sbjct: 189 RNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 48 ETVLCKAKN-FTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDL---SYNQIQFVP 103
E ++ ++KN +P+ L T +L++S N++ +++L +L + S+N+IQ++
Sbjct: 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 104 SHILDSILELRELKLSGNPIQKITHEAFINVPKLNL 139
+ EL L LS N + KI+ +N+ L+L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 69 QVLDLSDNFLDRYTFR--KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+VLDL N + + KL L EL+++ NQ++ VP I D + L+++ L NP
Sbjct: 424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+ LDLS N L + + +NL LDLS+N +P I + +LK G +
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP--ICKEFGNMSQLKFLGLSTTHLEK 129
Query: 129 EAFINVPKLNL 139
+ + + LN+
Sbjct: 130 SSVLPIAHLNI 140
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 LDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 129 EAFINVPKL 137
PKL
Sbjct: 142 GLLTPTPKL 150
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 LDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 83 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 142
Query: 129 EAFINVPKL 137
PKL
Sbjct: 143 GLLTPTPKL 151
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 70 VLDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 128 HEAFINVPKL 137
PKL
Sbjct: 141 PGLLTPTPKL 150
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 LDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 129 EAFINVPKL 137
PKL
Sbjct: 142 GLLTPTPKL 150
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 70 VLDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 128 HEAFINVPKL 137
PKL
Sbjct: 141 PGLLTPTPKL 150
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 LDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 129 EAFINVPKL 137
PKL
Sbjct: 142 GLLTPTPKL 150
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 70 VLDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 128 HEAFINVPKL 137
PKL
Sbjct: 141 PGLLTPTPKL 150
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 71 LDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 129 EAFINVPKL 137
PKL
Sbjct: 142 GLLTPTPKL 150
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 70 VLDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 128 HEAFINVPKL 137
PKL
Sbjct: 141 PGLLTPTPKL 150
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINL 89
A CP C C + V C +P+++ T +LDL +N L + F+ L +L
Sbjct: 25 AMCPFGCHCHLR----VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHL 80
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
L L N+I + + +L++L +S N + +I
Sbjct: 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 57 FTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI---NLVELDLSYNQIQFVPSHILDSILEL 113
T IP+ L L L N + L+ L L L +NQI+ + + L + L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 114 RELKLSGNPIQKI 126
REL L N + ++
Sbjct: 244 RELHLDNNKLSRV 256
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
++P +V E ++ CR S P + W ++ + + N Y
Sbjct: 381 VKPYGTEVG--EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY------ 432
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
LTI V D G YT RAKN G + LNV +
Sbjct: 433 ---GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 468
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 70 VLDLSDNFLDRYTF--RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS N L + L L LD+S+N++ +P L + EL+EL L GN ++ +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 128 HEAFINVPKL 137
PKL
Sbjct: 141 PGLLTPTPKL 150
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 34.7 bits (78), Expect = 0.092, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
P I T A E + C +P P +I W +KE ++ + +SG +Y ++
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG-------RYTVE 66
Query: 205 TINS----LSNLTIVAVTMSD-SGIYTCRAKNGAG 234
TI++ +S LTI + +D IY C A N G
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG 101
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 24/148 (16%)
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD--- 221
+ C+A+G+P+P+I WI + GL + I+S L D
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGL----------RQISSDGKLVFPPFRAEDYRQ 73
Query: 222 ---SGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVASLTTVVTIIL---TAC 274
+ +Y C A+N G + + ++ + + +++ ++ D Y++ + V+ + A
Sbjct: 74 EVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEIPSYVAD 133
Query: 275 FVVLCIILLKAKRKRY----ADVNRRYL 298
FV + + L R Y A+ + +YL
Sbjct: 134 FVFVDLWLDSEGRNYYPNNAAETDGKYL 161
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P T + +C+ TG+P+ + W+ K I +S S L
Sbjct: 318 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-------------------HSESVL 358
Query: 213 TIVAVTMSDSGIYTCRAKN 231
I +V D G+Y C +N
Sbjct: 359 RIESVKKEDKGMYQCFVRN 377
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
Q L L DN L TFR L NL L L N+I VP + L L L N +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 126 ITHEAFINVPKL 137
+ AF ++ +L
Sbjct: 192 VHPHAFRDLGRL 203
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
Q L L DN L TFR L NL L L N+I VP + L L L N +
Sbjct: 131 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 190
Query: 126 ITHEAFINVPKL 137
+ AF ++ +L
Sbjct: 191 VHPHAFRDLGRL 202
>pdb|2FBO|J Chain J, Crystal Structure Of The Two Tandem V-Type Regions Of
Vcbp3 (V-Region-Containing Chitin Binding Protein) To
1.85 A
Length = 250
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN--MNKRQYIIKTINS---- 208
V +E ++T++C T + W N +G NK Q+ I +S
Sbjct: 146 VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205
Query: 209 ------LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
NL I A ++D+G C G GE+ + S ++KV
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P P +W+ K R K N +L +V SD
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIXESVVPSDK 87
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 88 GNYTCVVENEYGSINHTYHLDVVE-----RSPHRPILQAGLPANASTVVGGDVEFVCKVY 142
Query: 283 LKAK 286
A+
Sbjct: 143 SDAQ 146
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 55/139 (39%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIP-----------------EQLDVG---------- 67
CPS C C G E + C +K T++P + L G
Sbjct: 1 CPSRCSC---SGTE-IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 68 -----TQVLDLSDNFLDRYT-------------------FRKLINLVELDLSYNQIQFVP 103
Q+ L D D+ T F KL L EL L NQ++ VP
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 104 SHILDSILELRELKLSGNP 122
I D + L+++ L NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 281
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 282 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 331
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 332 LQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 371
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 277
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 278 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 327
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 328 LQRLFFSNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 367
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 65 DVGTQVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS 119
+ Q L L++N L ++ K NL +LDLSYN + V + + LR L L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 120 GNPIQKITHEAFINVPKL 137
N IQ+++ +F + L
Sbjct: 281 YNNIQRLSPRSFYGLSNL 298
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 278
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 279 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 328
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 329 LQRLFFSNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 368
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII---KTINSLSNLTIVAVTM 219
V C A G+P+P ++W+ K K+++ I K N +L + +V
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEF-----------KQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 220 SDSGIYTCRAKNGAGEVFTNISLNVI 245
SD G YTC +N G + L+V+
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLDVV 100
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
++P +V E ++ CR S P + W ++ + + N Y
Sbjct: 487 VKPYGTEVG--EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY------ 538
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
LTI V D G YT RAKN G + LNV
Sbjct: 539 ---GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII---KTINSLSNLTIVAVTM 219
V C A G+P+P ++W+ K K+++ I K N +L + +V
Sbjct: 30 VKFRCPAGGNPMPTMRWLKNGKEF-----------KQEHRIGGYKVRNQHWSLIMESVVP 78
Query: 220 SDSGIYTCRAKNGAGEVFTNISLNVI 245
SD G YTC +N G + L+V+
Sbjct: 79 SDKGNYTCVVENEYGSINHTYHLDVV 104
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII---KTINSLSNLTIVAVTM 219
V C A G+P+P ++W+ K K+++ I K N +L + +V
Sbjct: 31 VKFRCPAGGNPMPTMRWLKNGKEF-----------KQEHRIGGYKVRNQHWSLIMESVVP 79
Query: 220 SDSGIYTCRAKNGAGEVFTNISLNVI 245
SD G YTC +N G + L+V+
Sbjct: 80 SDKGNYTCVVENEYGSINHTYHLDVV 105
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ R F K+ L +L+L+ NQ++ VP I D + L+++ L NP
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 80 RYTFRKLI-----------NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
R+T R+L NL L+L N I+ +PSH+ D + L ++ N ++++
Sbjct: 129 RFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPR 187
Query: 129 EAFINVPKLNLEDFA 143
F +PKL + A
Sbjct: 188 GIFGKMPKLKQLNLA 202
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 282
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 283 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 332
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 333 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 372
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 53 KAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
++++FT+IP L + LDLS N ++ R NL L L ++I + S
Sbjct: 39 RSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 98
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSP----NIRPITPDVT 156
+ L L LS N + ++ F + L + +P + + P++T
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 149
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 277
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 278 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 327
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 328 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 367
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV 215
T EN T C+A G+P+P++K + I V
Sbjct: 381 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----------------------V 418
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT G Y CRA++ GEV +++NV+
Sbjct: 419 TVTRDLEGTYLCRARSTQGEVTREVTVNVL 448
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNG 232
LS LTI VT SD G+YTC A +G
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSG 96
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNG 232
LS LTI VT SD G+YTC A +G
Sbjct: 159 LSTLTIDGVTRSDQGLYTCAASSG 182
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V C A G+P P +W+ K R K N +L +V SD
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIXESVVPSDK 80
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIIL 282
G YTC +N G + L+V++ P L A L + ++ +C +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVE-----RSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 283 LKAK 286
A+
Sbjct: 136 SDAQ 139
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISS----GLANMN--KRQYIIKTINSLSNLTIV 215
+V C+ P I+WI + + N S GL + K + T + L I
Sbjct: 127 DVEFVCKVYSDAQPHIQWI--KHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT D+G YTC A N G F + L V+
Sbjct: 185 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 214
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 278
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 279 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 328
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 329 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 368
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 53 KAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
++++FT+IP L + LDLS N ++ R NL L L ++I + S
Sbjct: 13 RSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSP----NIRPITPDVT 156
+ L L LS N + ++ F + L + +P + + P++T
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 29/161 (18%)
Query: 71 LDLSDNFL-DRYTFRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITH 128
L L+ N L D T L NL +LDL+ NQI P L + +L ELKL N I I+
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 278
Query: 129 ----EAFINVPKLN---LEDFACSPNIRPITPDVTAEENENVTLSCRATG--SPVPKI-- 177
A N+ +LN LED + N++ +T +TL SPV +
Sbjct: 279 LAGLTALTNL-ELNENQLEDISPISNLKNLTY---------LTLYFNNISDISPVSSLTK 328
Query: 178 --KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ F ++++SS LAN+ ++ N +S+LT +A
Sbjct: 329 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 368
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNG 232
LS LTI VT SD G+YTC A +G
Sbjct: 170 LSTLTIDGVTRSDQGLYTCAASSG 193
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV 215
T EN T C+A G+P+P++K + I V
Sbjct: 197 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----------------------V 234
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT G Y CRA++ GEV +++NV+
Sbjct: 235 TVTRDLEGTYLCRARSTQGEVTREVTVNVL 264
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--IIANISSGLANMNKRQYIIKTINSL 209
T +T EE + +TL C + ++W+ I N L N +K Q + + N L
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKN-SKYQLLHHSANQL 66
Query: 210 SNLTIVAVTMSDSGIYTC 227
S +T+ VT+ D G+Y C
Sbjct: 67 S-ITVPNVTLQDEGVYKC 83
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV 215
T EN T C+A G+P+P++K + I V
Sbjct: 196 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----------------------V 233
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
VT G Y CRA++ GEV +++NV+
Sbjct: 234 TVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P I P+ + + EN+ LSC A +P + W N +Q
Sbjct: 205 APTISPL--NTSYRSGENLNLSCHAASNPPAQYSW-------------FVNGTFQQ---- 245
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVAS 262
S L I +T+++SG YTC+A N T ++ + T A+P ++ ++
Sbjct: 246 ---STQELFIPNITVNNSGSYTCQAHNSD----TGLNRTTVTTITVYAEPPKPFITSN 296
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
N++LSC A +P + W+ I +Q+ + L I +T +
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGNI-------------QQHTQE-------LFISNITEKN 437
Query: 222 SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
SG+YTC+A N A + ++ I V + +P
Sbjct: 438 SGLYTCQANNSASG-HSRTTVKTITVSAELPKP 469
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
N +D F L +L EL L NQ++ VP I D + L+++ L NP
Sbjct: 312 NKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 358
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E V ++C+A G+P P I WI + + +M+ +Y +K L I
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKV--------DMSNPRYSLKD----GFLQIENS 170
Query: 218 TMSDSGIYTCRAKNGAG---EVFTNISLNVIKVET 249
D G Y C A+N G TN+ + V +V T
Sbjct: 171 REEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT 205
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS-D 221
+ C A G P P I W K ++ S R +++ +S L I V D
Sbjct: 24 ASFYCAARGDPPPSIVWRKNGKKVSGTQS-------RYTVLEQPGGISILRIEPVRAGRD 76
Query: 222 SGIYTCRAKNGAGEVFT 238
Y C A+NG G+ +
Sbjct: 77 DAPYECVAENGVGDAVS 93
>pdb|2BNQ|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L ++R+ +N+
Sbjct: 10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 69
Query: 209 -LSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S L I A DS Y C R +G + T + V + PDP V L
Sbjct: 70 GRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPA--VYQLRD 127
Query: 266 VVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 128 SKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 161
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 146 PNIRPITPDVTAEENENVTLSC---RATGSPVPKIKWIF-KEK---------IIANISSG 192
P + +P + E+V + C R V ++ W+F K+K +N+S
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 193 LANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTC--RAKN 231
R +++ T ++ +L + V +D GIYTC R KN
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN 107
>pdb|2BNU|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L ++R+ +N+
Sbjct: 10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 69
Query: 209 -LSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S L I A DS Y C R +G + T + V + PDP V L
Sbjct: 70 GRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPA--VYQLRR 127
Query: 266 VVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 128 SKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 161
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGLANMNKRQYIIKTINSL 209
++ E L C T + + ++W K + ++SG + + +
Sbjct: 13 LSLHEGTGSALRCNFT-TTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERY 71
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
S L I + DSG Y C A+ +G+ ++KV + PDP V L +
Sbjct: 72 STLHIRDAQLEDSGTYFCAAEPSSGQKLVFGQGTILKVYLHIQNPDPA--VYQLRDSKSS 129
Query: 270 ILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ C + + +DV Y+ DKC
Sbjct: 130 DKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 159
>pdb|4E41|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|I Chain I, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|A Chain A, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|C Chain C, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 203
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGLANMNKRQYIIKTIN 207
PD+ +E N TL C + S V ++W + + I SG +
Sbjct: 8 PDLILQEGANSTLRCNFSDS-VNNLQWFHQNPWGQLINLFYIPSGTKQNGRLSATTVATE 66
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGA--GEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S L I + +DSG+Y C G+ G ++ + V + +PDP V L
Sbjct: 67 RYSLLYISSSQTTDSGVYFCAVDRGSTLGRLYFGRGTQ-LTVWPDIQKPDPA--VYQLRD 123
Query: 266 VVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 124 SKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 157
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
++ E+ + CR + SP P + W++ + + IS M + +NL I+ +
Sbjct: 109 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM----------LANNNLQILNI 158
Query: 218 TMSDSGIYTCRAKNGA-GEV 236
SD GIY C + A GE+
Sbjct: 159 NKSDEGIYRCEGRVEARGEI 178
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 160 NENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E+ +C A G P I W EKII+ ++ +++ S LTI
Sbjct: 17 GESKFFTCTAIGEP-ESIDWYNPQGEKIIST----------QRVVVQKEGVRSRLTIYNA 65
Query: 218 TMSDSGIYTCRAKNGAGE 235
+ D+GIY C+A + G+
Sbjct: 66 NIEDAGIYRCQATDAKGQ 83
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 17/66 (25%)
Query: 74 SDNFLDRYTFR-------------KLIN----LVELDLSYNQIQFVPSHILDSILELREL 116
+++ + ++TFR KL+N L+EL+ S NQ++ VP I D + L+++
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306
Query: 117 KLSGNP 122
L NP
Sbjct: 307 WLHTNP 312
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA-FINV 134
N ++ +F L +L LDLSYN + + S + L L L GNP + + + F ++
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 135 PKLNL 139
KL +
Sbjct: 149 TKLQI 153
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+W+F +K++ + ++T S T+ D G+YT KN GE
Sbjct: 79 EWVFDKKLLCETEG--------RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 238 TNISLNVI 245
N+++ VI
Sbjct: 131 VNLTVKVI 138
>pdb|2XN9|A Chain A, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|A Chain A, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 204
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 14/155 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKR-QYIIKTIN 207
++ +E EN+T+ C ++ S ++W +E ++ ++ G KR +
Sbjct: 11 LSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDAR 69
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
S+L I A D+G+Y C G + + V+ + PDP V L
Sbjct: 70 KDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTK-LSVKPNIQNPDPA--VYQLRDSK 126
Query: 268 TIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 127 SSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 158
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 155 VTAEENENVTLSCRATGS----PVPKIKWIFKEKIIANISSGLANM---NKRQYIIKTIN 207
VT E E TLSC S +I W ++K++ + SG N+ K + I N
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
+LS + I+A+ SD G Y C + F L + + P P
Sbjct: 64 NLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP 111
>pdb|2F54|D Chain D, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|K Chain K, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 206
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L ++R+ +N+
Sbjct: 11 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGGKLTSLLLIQSSQREQTSGRLNASLDKSA 70
Query: 209 -LSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S L I A DS Y C R +G + T + V + PDP V L
Sbjct: 71 GSSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPA--VYQLRD 128
Query: 266 VVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 129 SKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 162
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 146 PNIRPITPDVTAEENENVTL--SCRATGSPVPKIKW 179
P + + P EE + +TL SC A GSP P + W
Sbjct: 117 PPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTW 152
>pdb|1LK3|L Chain L, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|M Chain M, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 210
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTIN 207
P +T E +T+SC+A+ S ++ W ++ K++ +S LA+ ++
Sbjct: 8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG 67
Query: 208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISLNVIKVETA 250
+ LTI V D+ IY C+ NG L + + + A
Sbjct: 68 TDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAA 111
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E V ++C+A G+P P I WI + + +M+ +Y +K L I
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKV--------DMSNPRYSLKD----GFLQIENS 172
Query: 218 TMSDSGIYTCRAKNGAG---EVFTNISLNVIKV 247
D G Y C A+N G TN+ + V +V
Sbjct: 173 REEDQGKYECVAENSMGTEHSKATNLYVKVRRV 205
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS-D 221
+ C A G P P I W K ++ S R +++ +S L I V D
Sbjct: 26 ASFYCAARGDPPPSIVWRKNGKKVSGTQS-------RYTVLEQPGGISILRIEPVRAGRD 78
Query: 222 SGIYTCRAKNGAGEVFT 238
Y C A+NG G+ +
Sbjct: 79 DAPYECVAENGVGDAVS 95
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 155 VTAEENENVTLSCRATGS----PVPKIKWIFKEKIIANISSGLANM---NKRQYIIKTIN 207
VT E E TLSC S +I W ++K++ + SG N+ K + I N
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
+LS + I+A+ SD G Y C + F L + + P P
Sbjct: 64 NLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP 111
>pdb|1OGA|D Chain D, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 215
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKR-QYIIKTIN 207
++ +E EN+T+ C ++ S ++W +E ++ ++ G KR +
Sbjct: 11 LSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDAR 69
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S+L I A D+G+Y C G + + V+ + PDP
Sbjct: 70 KDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTK-LSVKPNIQNPDPA 118
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 31.2 bits (69), Expect = 0.86, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 152 TPDV-TAEENENVTLSC--RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
TP + T E E++T++C R T + W ++ K+ + ++ + + ++
Sbjct: 6 TPRIATKETGESLTINCVLRDTACALDSTNW-YRTKLGSTKEQTISIGGRYSETVDEGSN 64
Query: 209 LSNLTIVAVTMSDSGIYTCRA------------KNGAGEVFT 238
++LTI + + DSG Y C+A K GAG V T
Sbjct: 65 SASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVLT 106
>pdb|1TCR|A Chain A, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|A Chain A, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|C Chain C, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|A Chain A, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|C Chain C, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|A Chain A, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|C Chain C, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 202
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 153 PD--VTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSG---LANMNKRQYI 202
PD VT E ++ L C+ + S P + W + +++ SG + +N +
Sbjct: 6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAE 65
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
NS +L +V SDS +Y C A +G T S + V + P+P
Sbjct: 66 FSKSNSSFHLRKASVHWSDSAVYFC-AVSGFASALTFGSGTKVIVLPYIQNPEPA 119
>pdb|2VLJ|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|I Chain I, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 201
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKR-QYIIKTIN 207
++ +E EN+T+ C ++ S ++W +E ++ ++ G KR +
Sbjct: 11 LSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDAR 69
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S+L I A D+G+Y C G + + V+ + PDP
Sbjct: 70 KDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTK-LSVKPNIQNPDPA 118
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIA----NISSGLANMNKRQYIIKTINSLSNLTI 214
E ++V L C+ + P PK+ W +++ IS N + +IK +N
Sbjct: 29 EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK------ 82
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
D+G YT A N AG N L+V
Sbjct: 83 -----KDAGWYTVSAVNEAGVTTCNTRLDV 107
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 146 PNIRPITP----DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
P+++P D+ E C+ G P P++ W + + R +
Sbjct: 38 PHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE---------SRHF 88
Query: 202 IIKTINSLS-NLTIVAVTMSDSGIYTCRAKNGAGEV 236
I + +LTI V D YTC+A N GE
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 160 NENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E+ +C A G P I W EKII+ ++ +++ S LTI
Sbjct: 15 GESKFFTCTAIGEP-ESIDWYNPQGEKIIST----------QRVVVQKEGVRSRLTIYNA 63
Query: 218 TMSDSGIYTCRAKNGAGE 235
+ D+GIY C+A + G+
Sbjct: 64 NIEDAGIYRCQATDAKGQ 81
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 146 PNIRPITP----DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
P+++P D+ E C+ G P P++ W + + R +
Sbjct: 38 PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE---------SRHF 88
Query: 202 IIKTINSLS-NLTIVAVTMSDSGIYTCRAKNGAGEV 236
I + +LTI V D YTC+A N GE
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 195 NMNKRQYIIKTIN-SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
+ K +++I + +LS LT+ + DS Y C A++G G +T
Sbjct: 61 GVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDGTGNGYT 105
>pdb|2F53|D Chain D, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 193
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 14/157 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L +R+ +N+
Sbjct: 12 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIPFWQREQTSGRLNASLDKSS 71
Query: 209 -LSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S L I A DS Y C R +G + T + V + PDP V L
Sbjct: 72 GRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPA--VYQLRD 129
Query: 266 VVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 130 SKSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 163
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 45 GGKETVLCKAKNFTTIPEQ--LDVGTQVLDLSDNFLDRYTFRKLI--NLVELDLSYNQIQ 100
G + K++ F+ I + G ++ D D+ TF L ++ LDLS+ +
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP--DQNTFAGLARSSVRHLDLSHGFVF 279
Query: 101 FVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ S + +++ +L+ L L+ N I KI EAF + L
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 71 LDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
LDLS F L+ F L +L L+L+YN+I + + L+ L LS N + ++
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 128 HEAFINVPKL 137
F +PK+
Sbjct: 331 SSNFYGLPKV 340
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 48 ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHIL 107
TV + F + L++G+Q L+ +D+ FR L NL LDL ++I F+
Sbjct: 37 RTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93
Query: 108 DSILELRELKL 118
+ L EL+L
Sbjct: 94 QGLFHLFELRL 104
>pdb|1YUH|H Chain H, Fab Fragment
pdb|1YUH|B Chain B, Fab Fragment
Length = 218
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY---I 202
P++ P+ P A+ N VTL C +K F E + +SG + + +
Sbjct: 124 PSVYPLAPGSAAQTNSMVTLGCL--------VKGYFPEPVTVTWNSGALSSGVHTFPAVL 175
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233
+ +LS+ V + SG TC + A
Sbjct: 176 QSDLYTLSSSVTVPASTWPSGTVTCNVAHPA 206
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
P+T +VT E L+CR + ++W + A + R +++
Sbjct: 11 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE 70
Query: 210 SNLTIVAVTMSDSGIYTC 227
++++ V++SD G YTC
Sbjct: 71 LSISVSDVSLSDEGQYTC 88
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS----DSGIYTCRAKNGA 233
+K+K+ ++ L N++ QY+I N+L + +V+ D G YT KN A
Sbjct: 306 WKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAA 362
>pdb|2IAL|A Chain A, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAL|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAM|C Chain C, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|I Chain I, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|N Chain N, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|S Chain S, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
Length = 202
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 11/155 (7%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGLANMNKRQYIIKTIN 207
PD+ +E N TL C + S V ++W + + I SG +
Sbjct: 8 PDLILQEGANSTLRCNFSDS-VNNLQWFHQNPWGQLINLFYIPSGTKQNGRLSATTVATE 66
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
S L I + +DSG+Y C A + + + + PDP V L
Sbjct: 67 RYSLLYISSSQTTDSGVYFCAALIQGAQKLVFGQGTRLTINPNIQNPDPA--VYQLRDSK 124
Query: 268 TIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 125 SSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 156
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS----DSGIYTCRAKNGA 233
+K+K+ ++ L N++ QY+I N+L + +V+ D G YT KN A
Sbjct: 306 WKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAA 362
>pdb|3KG5|A Chain A, Crystal Structure Of Human Ig-Beta Homodimer
pdb|3KG5|B Chain B, Crystal Structure Of Human Ig-Beta Homodimer
Length = 134
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 172 SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK- 230
S + W++K+++ N + K + SL+ LTI + D+GIY C+ K
Sbjct: 44 SASGNVSWLWKQEMDENPQQ--LKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKC 101
Query: 231 NGAGEVF 237
N EV+
Sbjct: 102 NNTSEVY 108
>pdb|1YQV|H Chain H, The Crystal Structure Of The Antibody Fab Hyhel5 Complex
With Lysozyme At 1.7a Resolution
Length = 215
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 160 NENVTLSCRATGSPVPK--IKWIFKE-----KIIANI--SSGLANMNKR-----QYIIKT 205
+V +SC+A+G I+W+ + + I I SG N ++R + T
Sbjct: 15 GASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTNYHERFKGKATFTADT 74
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKN----GAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
+S + + + ++T DSG+Y C N G G+ T + V +A P VY +A
Sbjct: 75 SSSTAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTT------LTVSSAKTTPPSVYPLA 128
Query: 262 SLTTVVT--IILTACFV 276
+ T ++ C V
Sbjct: 129 PGSAAQTNSMVTLGCLV 145
>pdb|3O4L|D Chain D, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 195
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI---SSGLANMNKRQYIIKTI----- 206
++ E ++ ++C T S + W +K++ A + + +NM+ +Q KT+
Sbjct: 5 LSVREGDSSVINCTYTDSSSTYLYW-YKQEPGAGLQLLTYIFSNMDMKQDQRKTVLLNKK 63
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTV 266
+ +L I DS IY C N A +F + + V+K + PDP V L
Sbjct: 64 DKHLSLRIADTQTGDSAIYFCAEDNNARLMFGDGTQLVVKPN--IQNPDPA--VYQLRDS 119
Query: 267 VTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 120 KSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 152
>pdb|2EYR|A Chain A, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
pdb|2EYS|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|A Chain A, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|C Chain C, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 210
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSN 211
E +N TL C T SP ++W ++ I S + + + S+
Sbjct: 17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSS 76
Query: 212 LTIVAVTMSDSGIYTC 227
L I A +SDS Y C
Sbjct: 77 LHITASQLSDSASYIC 92
>pdb|3TYF|A Chain A, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|C Chain C, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|A Chain A, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|G Chain G, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 213
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSN 211
E +N TL C T SP ++W ++ I S + + + S+
Sbjct: 17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSS 76
Query: 212 LTIVAVTMSDSGIYTC 227
L I A +SDS Y C
Sbjct: 77 LHITASQLSDSASYIC 92
>pdb|2PO6|C Chain C, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|G Chain G, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|3SDX|E Chain E, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|G Chain G, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 204
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSN 211
E +N TL C T SP ++W ++ I S + + + S+
Sbjct: 14 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSS 73
Query: 212 LTIVAVTMSDSGIYTC 227
L I A +SDS Y C
Sbjct: 74 LHITASQLSDSASYIC 89
>pdb|2IJ0|E Chain E, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|C Chain C, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
Length = 118
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMN--------KRQYIIK 204
V + +V + CR+ + + + W F ++ + +++ N K +++I
Sbjct: 11 VIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLIN 70
Query: 205 TIN-SLSNLTIVAVTMSDSGIYTCRAKNGAG 234
+ +LS LT+ + DSG Y C A G+G
Sbjct: 71 HASPTLSTLTVTSAHPEDSGFYVCSALAGSG 101
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD--- 221
+ C+A+G+P+P+I WI + GL + I+S L D
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGL----------RQISSDGKLVFPPFRAEDYRQ 79
Query: 222 ---SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQ 253
+ +Y C A+N G + IS +V V VAQ
Sbjct: 80 EVHAQVYACLARNQFGSI---ISRDV-HVRAVVAQ 110
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P T + +C+ TG+P+ + W+ K I +S S L
Sbjct: 321 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-------------------HSESVL 361
Query: 213 TIVAVTMSDSGIYTCRAKN 231
I +V D G+Y C +N
Sbjct: 362 RIESVKKEDKGMYQCFVRN 380
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSD 221
++L C A G P P +W K I + A +N R +K ++ L I + D
Sbjct: 236 ISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDR---VKQVS--GTLIIKDAVVED 287
Query: 222 SGIYTCRAKNGAG 234
SG Y C N G
Sbjct: 288 SGKYLCVVNNSVG 300
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 55 KNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVE---LDLSYNQIQFVPSHILDSIL 111
+N T +P+ L T+ L LS N + + L E L LS+N+I+ + H+
Sbjct: 41 RNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100
Query: 112 ELRELKLSGNPIQKIT 127
+L L +S N +Q I+
Sbjct: 101 DLEYLDVSHNRLQNIS 116
>pdb|3HUJ|E Chain E, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|G Chain G, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|C Chain C, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|C Chain C, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 209
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSN 211
E +N TL C T SP ++W ++ I S + + + S+
Sbjct: 16 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSS 75
Query: 212 LTIVAVTMSDSGIYTC 227
L I A +SDS Y C
Sbjct: 76 LHITASQLSDSASYIC 91
>pdb|2CDE|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|C Chain C, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|E Chain E, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 192
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSN 211
E +N TL C T SP ++W ++ I S + + + S+
Sbjct: 14 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSS 73
Query: 212 LTIVAVTMSDSGIYTC 227
L I A +SDS Y C
Sbjct: 74 LHITASQLSDSASYIC 89
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 155 VTAEENENVTLSC--RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS-- 210
+T E E++T++C R + + W K+ N S ++K ++T+NS S
Sbjct: 10 ITKETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEES----ISKGGRYVETVNSGSKS 65
Query: 211 -NLTIVAVTMSDSGIYTCR 228
+L I +T+ DSG Y C+
Sbjct: 66 FSLRINDLTVEDSGTYRCK 84
>pdb|3PL6|C Chain C, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 206
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSL 209
++ +E ++ + C + S W +E ++I +I S + K Q I T+N
Sbjct: 10 LSVQEGDSAVIKCTYSDSASNYFPWYKQELGKRPQLIIDIRSNVGE-KKDQRIAVTLNKT 68
Query: 210 S---NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTV 266
+ +L I DS +Y C A + E T + + + + PDP V L
Sbjct: 69 AKHFSLHITETQPEDSAVYFCAASSFGNEKLTFGTGTRLTIIPNIQNPDPA--VYQLRDS 126
Query: 267 VTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKC 302
+ + C + + +DV Y+ DKC
Sbjct: 127 KSSDKSVCLFTDFDSQTNVSQSKDSDV---YITDKC 159
>pdb|2IFF|H Chain H, Structure Of An Antibody-Lysozyme Complex: Effect Of A
Conservative Mutation
pdb|1BQL|H Chain H, Structure Of An Anti-Hel Fab Fragment Complexed With
Bobwhite Quail Lysozyme
Length = 215
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 160 NENVTLSCRATGSPVPK--IKWIFKE-----KIIANI--SSGLANMNKR-----QYIIKT 205
+V +SC+A+G I+W+ + + I I SG N ++R + T
Sbjct: 15 GASVKISCKASGYTFSDYWIEWVKQRPGHGLEWIGEILPGSGSTNYHERFKGKATFTADT 74
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKN----GAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
+S + + + ++T DSG+Y C N G G+ T + V +A P VY +A
Sbjct: 75 SSSTAYMQLNSLTSEDSGVYYCLHGNYDFDGWGQGTT------LTVSSAKTTPPSVYPLA 128
Query: 262 SLTTVVT--IILTACFV 276
+ T ++ C V
Sbjct: 129 PGSAAQTNSMVTLGCLV 145
>pdb|1FIG|L Chain L, Routes To Catalysis: Structure Of A Catalytic Antibody And
Comparison With Its Natural Counterpart
Length = 215
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 155 VTAEENENVTLSCRATGS-PVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINS 208
++A E VT++CRA+ S + W ++ K++ +S LA+ ++ +
Sbjct: 11 MSASPGEKVTMACRASSSVSSTYLHWYQQKSGASPKLLIYSTSNLASGVPARFSGSGSGT 70
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNG 232
+LTI +V D+ Y C+ +G
Sbjct: 71 SYSLTISSVEAEDAATYYCQQYSG 94
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 20/95 (21%)
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD--- 221
+ C+A+G+P+P+I WI + GL + I+S L D
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGL----------RQISSDGKLVFPPFRAEDYRQ 73
Query: 222 ---SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQ 253
+ +Y C A+N G + IS +V V VAQ
Sbjct: 74 EVHAQVYACLARNQFGSI---ISRDV-HVRAVVAQ 104
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P T + +C+ TG+P+ + W+ K I +S S L
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-------------------HSESVL 355
Query: 213 TIVAVTMSDSGIYTCRAKN 231
I +V D G+Y C +N
Sbjct: 356 RIESVKKEDKGMYQCFVRN 374
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSD 221
++L C A G P P +W K I + A +N R +K ++ L I + D
Sbjct: 230 ISLLCPAQGFPAPSFRWY---KFIEGTTRKQAVVLNDR---VKQVS--GTLIIKDAVVED 281
Query: 222 SGIYTCRAKNGAG 234
SG Y C N G
Sbjct: 282 SGKYLCVVNNSVG 294
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 36 PSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR 80
PS C W ++ +P+ L +VLDLS N L+R
Sbjct: 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR 286
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYI 202
P T VT ++V+LSCRA+ S K+ W +++K +I S + + R
Sbjct: 8 PATLSVTP--GDSVSLSCRASQSVSNKLHW-YQQKSHESPRLLIKFASQSIPGIPSRFSG 64
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232
+ + + L+I +V D GIY C +G
Sbjct: 65 SGSGSDFT-LSINSVETEDFGIYFCHQTHG 93
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA-FINV 134
N ++ +F L +L LDLSYN + + S + L L L GNP + + + F ++
Sbjct: 63 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 122
Query: 135 PKLNL 139
KL +
Sbjct: 123 TKLQI 127
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 44/133 (33%), Gaps = 31/133 (23%)
Query: 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLV 90
CP+ C C V C+ K T IP L + L N + F L
Sbjct: 4 HCPAACTC----SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLR 59
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH---------------------- 128
+DLS NQI + + L L L GN I ++
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 129 --EAFINVPKLNL 139
+AF ++ LNL
Sbjct: 120 RVDAFQDLHNLNL 132
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 44/133 (33%), Gaps = 31/133 (23%)
Query: 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLV 90
CP+ C C V C+ K T IP L + L N + F L
Sbjct: 4 HCPAACTC----SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLR 59
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH---------------------- 128
+DLS NQI + + L L L GN I ++
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXL 119
Query: 129 --EAFINVPKLNL 139
+AF ++ LNL
Sbjct: 120 RVDAFQDLHNLNL 132
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 84 RKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITHEA 130
+ L NL+ L+L NQI P L ++ ++ EL+LSGNP++ ++ A
Sbjct: 60 QYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIA 104
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
F L NL+ LD+S+ + + I + + L LK++GN Q+
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYI 202
P+T VT ++V+LSCRA+ S + W +++K +I S + + R +
Sbjct: 144 PVTLSVTP--GDSVSLSCRASQSISNNLHW-YRQKSHESPRLLIKYASQSIFGIPSR-FS 199
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ L+I +V D GIY C+ N F
Sbjct: 200 GSGSGTEFTLSINSVETEDFGIYFCQQSNSWPHTF 234
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSL 209
++A + VT++CRA+ S + W ++ K++ +S L + ++ +
Sbjct: 12 LSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTD 71
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
LTI ++ D Y C+ + +FT ++++ VA P
Sbjct: 72 FTLTISSLQPEDFATYYCQQYSSYSSLFTFGQGTKVEIKRTVAAP 116
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 118
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAG 234
+LS LT+ + DSG Y C A G+G
Sbjct: 75 TLSTLTVTSAHPEDSGFYICSALAGSG 101
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 83 FRKLINLVELDLSYNQI-QFVPSHILDSILELRELKLSGNPIQKITHEA 130
+ L NL+ L+L NQI P L ++ ++ EL+LSGNP++ ++ A
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP---LKNLTKITELELSGNPLKNVSAIA 110
>pdb|3O6F|C Chain C, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|G Chain G, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|C Chain C, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 206
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 157 AEENENVTLSC-RATGSPVPKIKWIFK------EKIIANISSGLANMNKRQYIIKTINSL 209
+ E E V L C +T S I W + E +I ++S + N I + S
Sbjct: 13 SNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKS- 71
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
S L + T+ D+ +Y C GA + ++ V+ + PDP
Sbjct: 72 STLILHRATLRDAAVYYCTVYGGATNKLIFGTGTLLAVQPNIQNPDPA 119
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKRQYIIK 204
P I D E+V L + TG+ W+ F+++I ++
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI----------QESEHMKVE 57
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
+ S LTI+A G YT +N G ++L T V +PDP
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL------TVVDKPDP 103
>pdb|1Y0L|L Chain L, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|A Chain A, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|C Chain C, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y0L|E Chain E, Catalytic Elimination Antibody 34e4 In Complex With Hapten
pdb|1Y18|L Chain L, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|A Chain A, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|C Chain C, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|1Y18|E Chain E, Fab Fragment Of Catalytic Elimination Antibody 34e4
E(H50)d Mutant In Complex With Hapten
pdb|3CFJ|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFJ|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Orthorhombic Crystal Form
pdb|3CFK|L Chain L, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|A Chain A, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|C Chain C, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|E Chain E, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|G Chain G, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|J Chain J, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|M Chain M, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
pdb|3CFK|O Chain O, Crystal Structure Of Catalytic Elimination Antibody 34e4,
Triclinic Crystal Form
Length = 216
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 155 VTAEENENVTLSCRATGSPVPK---IKWIFKEKIIANISSGLANMNKR------QYIIKT 205
+T E VTL+CR++ V W+ +EK + + NKR ++
Sbjct: 10 LTTSPGETVTLTCRSSSGAVTTSNYATWV-QEKPDHLFTGLIGGTNKRAPGVPARFSGSL 68
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
I + LTI D IY C N VF + ++++ VA P
Sbjct: 69 IGDRAALTITGAQTEDEAIYFCALWNSNHLVFGGGTK--LEIKRTVAAPS 116
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE----KIIANISSGLANMNK-- 198
P + T T + VT++C K K ++K+ ++ SSG N N
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 199 --RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
R I T L ++ I + +SD+G Y C+A + + N L V+K E + D
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYED 230
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
L++ AV D+GIY+C A N G ++ V++
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|2PYF|A Chain A, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry
Unbound Tcr Clone 5-1
Length = 205
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L ++R+ +N+
Sbjct: 11 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 70
Query: 209 -LSNLTIVAVTMSDSGIYTCRAK 230
S L I A DS Y C +
Sbjct: 71 GSSTLYIAASQPGDSATYLCAVR 93
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
L++ AV D+GIY+C A N G ++ V++
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 158 EENENVTLSCRATGSPVPK--------IKWIFKEKIIANISSGLANMN-------KRQYI 202
E N+T+ C+ PV K + W ++K I G ++ +R +
Sbjct: 14 EYGSNMTIECKF---PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 203 IKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+K SL N L I V + D+G+Y C G + + I++ V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD-YKRITVKV 113
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 158 EENENVTLSCRATGSPVPK--------IKWIFKEKIIANISSGLANMN-------KRQYI 202
E N+T+ C+ PV K + W ++K I G ++ +R +
Sbjct: 14 EYGSNMTIECKF---PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 203 IKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+K SL N L I V + D+G+Y C G + + I++ V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD-YKRITVKV 113
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 158 EENENVTLSCRATGSPVPK--------IKWIFKEKIIANISSGLANMN-------KRQYI 202
E N+T+ C+ PV K + W ++K I G ++ +R +
Sbjct: 14 EYGSNMTIECKF---PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 203 IKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+K SL N L I V + D+G+Y C G + + I++ V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD-YKRITVKV 113
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ LTI + ++DSG++ C A N G +L V+
Sbjct: 248 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 283
>pdb|2PYE|D Chain D, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
Length = 195
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS------ 208
++ E EN+ L+C T S + ++W ++ S L ++R+ +N+
Sbjct: 12 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 71
Query: 209 -LSNLTIVAVTMSDSGIYTCRAK 230
S L I A DS Y C +
Sbjct: 72 GSSTLYIAASQPGDSATYLCAVR 94
>pdb|1ZOX|A Chain A, Clm-1 Mouse Myeloid Receptor Extracellular Domain
Length = 113
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 150 PIT--PDVTAEENENVTLSCRAT-GSPVPKIKWI-------FKEKIIANISSGLANMNKR 199
P+T +V+ +E ++T+ CR T G K W K + + S L N+
Sbjct: 4 PVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRV 63
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
+ + +T+ + MSD+GIY C G + +++N+ V T
Sbjct: 64 SIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVPT 113
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
LTI + + DSG++ C A N G +L V++
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ LTI + ++DSG++ C A N G +L V+
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
>pdb|1SEQ|H Chain H, Fab Mnac13
Length = 225
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
P++ P+ P A+ N VTL C +K F E + +SG
Sbjct: 129 PSVYPLAPGSAAQTNSMVTLGCL--------VKGYFPEPVTVTWNSG 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,949,763
Number of Sequences: 62578
Number of extensions: 371870
Number of successful extensions: 2316
Number of sequences better than 100.0: 257
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 510
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)