Query psy12695
Match_columns 369
No_of_seqs 420 out of 4160
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 17:16:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 99.9 4.2E-26 9.1E-31 207.2 14.6 112 145-264 612-723 (873)
2 KOG4237|consensus 99.8 1.1E-19 2.3E-24 158.7 2.4 107 30-137 32-142 (498)
3 KOG4194|consensus 99.7 4.3E-17 9.4E-22 149.1 9.6 93 146-249 707-800 (873)
4 cd05762 Ig8_MLCK Eighth immuno 99.7 1.1E-15 2.3E-20 112.9 12.7 95 146-249 1-95 (98)
5 cd05851 Ig3_Contactin-1 Third 99.6 8.6E-15 1.9E-19 105.9 10.2 86 146-244 2-87 (88)
6 cd05747 Ig5_Titin_like M5, fif 99.6 2.3E-14 5E-19 104.8 11.8 89 145-242 3-91 (92)
7 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 3.3E-14 7.2E-19 102.2 11.9 84 153-244 3-86 (86)
8 cd05737 Ig_Myomesin_like_C C-t 99.6 4.2E-14 9.2E-19 103.4 11.2 86 150-244 6-92 (92)
9 PF07679 I-set: Immunoglobulin 99.5 7.6E-14 1.6E-18 101.7 11.1 90 146-244 1-90 (90)
10 cd04972 Ig_TrkABC_d4 Fourth do 99.5 1.3E-13 2.9E-18 100.3 11.8 86 150-244 5-90 (90)
11 cd05869 Ig5_NCAM-1 Fifth immun 99.5 7.7E-14 1.7E-18 103.1 10.7 95 146-244 3-97 (97)
12 cd05870 Ig5_NCAM-2 Fifth immun 99.5 8.8E-14 1.9E-18 103.0 10.9 94 146-244 3-98 (98)
13 cd05892 Ig_Myotilin_C C-termin 99.5 1E-13 2.3E-18 96.5 9.7 74 163-244 1-75 (75)
14 cd05745 Ig3_Peroxidasin Third 99.5 7.7E-14 1.7E-18 97.5 8.8 74 159-244 1-74 (74)
15 cd05732 Ig5_NCAM-1_like Fifth 99.5 1.9E-13 4.1E-18 100.9 11.1 94 146-244 3-96 (96)
16 cd04968 Ig3_Contactin_like Thi 99.5 1.8E-13 3.8E-18 99.3 10.5 85 147-244 3-87 (88)
17 cd05728 Ig4_Contactin-2-like F 99.5 1.4E-13 3E-18 99.0 9.8 84 148-244 2-85 (85)
18 cd04975 Ig4_SCFR_like Fourth i 99.5 2.5E-13 5.3E-18 100.4 10.9 85 153-245 11-100 (101)
19 cd05852 Ig5_Contactin-1 Fifth 99.5 1.6E-13 3.5E-18 95.2 9.0 73 160-244 1-73 (73)
20 cd05893 Ig_Palladin_C C-termin 99.5 2.2E-13 4.7E-18 95.1 9.4 74 163-244 1-75 (75)
21 cd05730 Ig3_NCAM-1_like Third 99.5 5.7E-13 1.2E-17 98.1 11.6 84 153-246 11-94 (95)
22 cd05865 Ig1_NCAM-1 First immun 99.5 5.6E-13 1.2E-17 97.7 11.3 86 151-244 6-95 (96)
23 cd05735 Ig8_DSCAM Eight immuno 99.5 7.2E-13 1.6E-17 95.8 11.6 81 160-248 1-85 (88)
24 cd05891 Ig_M-protein_C C-termi 99.5 6.9E-13 1.5E-17 96.8 11.6 86 150-244 6-92 (92)
25 cd05867 Ig4_L1-CAM_like Fourth 99.5 4.9E-13 1.1E-17 93.9 10.2 75 160-244 1-75 (76)
26 cd05863 Ig2_VEGFR-3 Second imm 99.5 2.9E-13 6.2E-18 91.7 8.5 66 163-245 1-66 (67)
27 cd05868 Ig4_NrCAM Fourth immun 99.5 4.3E-13 9.3E-18 94.1 9.7 76 160-245 1-76 (76)
28 cd05857 Ig2_FGFR Second immuno 99.5 9.9E-13 2.1E-17 94.7 11.5 82 155-244 4-85 (85)
29 cd05854 Ig6_Contactin-2 Sixth 99.5 1.2E-12 2.5E-17 94.0 11.6 82 161-248 1-85 (85)
30 cd05748 Ig_Titin_like Immunogl 99.5 7.7E-13 1.7E-17 92.5 10.5 74 162-244 1-74 (74)
31 cd05743 Ig_Perlecan_D2_like Im 99.5 9.3E-13 2E-17 93.0 10.2 76 160-244 1-76 (78)
32 cd05744 Ig_Myotilin_C_like Imm 99.4 1E-12 2.2E-17 91.9 9.9 74 163-244 1-75 (75)
33 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.2E-12 2.7E-17 92.0 9.9 75 160-244 1-75 (76)
34 cd05866 Ig1_NCAM-2 First immun 99.4 1.5E-12 3.2E-17 94.5 10.4 86 150-244 5-91 (92)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.5E-12 3.1E-17 96.5 10.4 90 153-245 11-100 (101)
36 cd05723 Ig4_Neogenin Fourth im 99.4 1.4E-12 2.9E-17 90.3 9.3 71 162-244 1-71 (71)
37 cd05740 Ig_CEACAM_D4 Fourth im 99.4 1.7E-12 3.7E-17 94.3 10.1 81 151-244 9-90 (91)
38 cd04969 Ig5_Contactin_like Fif 99.4 1.7E-12 3.8E-17 90.4 9.3 73 160-244 1-73 (73)
39 cd04974 Ig3_FGFR Third immunog 99.4 7E-13 1.5E-17 96.4 7.2 78 160-244 1-89 (90)
40 cd05726 Ig4_Robo Fhird immunog 99.4 2.9E-12 6.3E-17 93.2 10.4 85 160-248 1-85 (90)
41 cd05758 Ig5_KIRREL3-like Fifth 99.4 4.9E-12 1.1E-16 93.6 11.5 90 146-242 2-97 (98)
42 cd05876 Ig3_L1-CAM Third immun 99.4 2E-12 4.3E-17 89.5 8.2 70 163-244 1-70 (71)
43 cd05763 Ig_1 Subgroup of the i 99.4 2.7E-12 5.8E-17 90.0 8.9 74 163-244 1-74 (75)
44 cd07693 Ig1_Robo First immunog 99.4 6E-12 1.3E-16 93.5 11.3 95 146-244 2-99 (100)
45 cd04970 Ig6_Contactin_like Six 99.4 7E-12 1.5E-16 90.2 10.9 82 161-248 1-85 (85)
46 cd05856 Ig2_FGFRL1-like Second 99.4 2.8E-12 6E-17 91.6 8.7 79 155-244 4-82 (82)
47 cd05773 Ig8_hNephrin_like Eigh 99.4 1.2E-11 2.5E-16 93.2 12.2 96 145-248 4-108 (109)
48 cd05864 Ig2_VEGFR-2 Second imm 99.4 2.4E-12 5.2E-17 88.3 7.7 69 163-245 1-69 (70)
49 cd05858 Ig3_FGFR-2 Third immun 99.4 3.3E-12 7.1E-17 92.9 8.5 84 160-244 1-89 (90)
50 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 6.5E-12 1.4E-16 86.1 9.5 68 160-242 1-68 (69)
51 cd05848 Ig1_Contactin-5 First 99.4 5.1E-12 1.1E-16 92.5 9.4 81 146-237 2-86 (94)
52 cd05760 Ig2_PTK7 Second immuno 99.4 5.8E-12 1.3E-16 88.6 9.4 73 163-245 1-75 (77)
53 cd04976 Ig2_VEGFR Second immun 99.4 4.8E-12 1E-16 87.5 8.7 70 163-245 1-70 (71)
54 cd05853 Ig6_Contactin-4 Sixth 99.4 6.2E-12 1.4E-16 89.3 9.5 82 161-248 1-85 (85)
55 cd05882 Ig1_Necl-1 First (N-te 99.4 1.1E-11 2.4E-16 90.5 10.9 90 152-243 4-94 (95)
56 cd05725 Ig3_Robo Third immunog 99.4 4.7E-12 1E-16 87.2 8.2 69 163-244 1-69 (69)
57 cd04973 Ig1_FGFR First immunog 99.3 4.6E-12 9.9E-17 89.6 8.2 79 152-244 1-79 (79)
58 cd05746 Ig4_Peroxidasin Fourth 99.3 4.3E-12 9.2E-17 87.3 7.9 68 163-242 1-68 (69)
59 cd05749 Ig2_Tyro3_like Second 99.3 9.8E-12 2.1E-16 87.9 9.8 77 149-242 2-80 (81)
60 cd05850 Ig1_Contactin-2 First 99.3 1E-11 2.2E-16 91.0 10.0 86 146-242 2-92 (94)
61 cd04977 Ig1_NCAM-1_like First 99.3 1.2E-11 2.6E-16 90.2 10.3 86 150-244 5-92 (92)
62 cd05724 Ig2_Robo Second immuno 99.3 1.3E-11 2.9E-16 89.0 10.4 82 151-243 2-85 (86)
63 cd05849 Ig1_Contactin-1 First 99.3 1.3E-11 2.7E-16 90.1 9.9 85 146-242 2-91 (93)
64 cd07701 Ig1_Necl-3 First (N-te 99.3 2.2E-11 4.8E-16 89.2 11.1 92 151-244 3-95 (95)
65 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.1E-11 2.3E-16 86.8 8.9 75 165-243 3-77 (79)
66 cd05731 Ig3_L1-CAM_like Third 99.3 7.2E-12 1.6E-16 86.8 8.0 70 163-244 1-70 (71)
67 cd05764 Ig_2 Subgroup of the i 99.3 1.5E-11 3.2E-16 85.9 9.5 74 160-244 1-74 (74)
68 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.9E-11 4.1E-16 86.6 9.9 75 164-243 2-79 (81)
69 cd05898 Ig5_KIRREL3 Fifth immu 99.3 2.8E-11 6.1E-16 88.3 11.0 90 146-242 2-97 (98)
70 cd05765 Ig_3 Subgroup of the i 99.3 1.4E-11 3.1E-16 87.7 9.1 78 160-244 1-81 (81)
71 cd05722 Ig1_Neogenin First imm 99.3 1.9E-11 4.1E-16 89.9 9.8 85 150-244 4-95 (95)
72 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.5E-11 3.3E-16 85.8 8.5 72 163-244 1-73 (74)
73 cd05736 Ig2_Follistatin_like S 99.3 2.7E-11 5.8E-16 85.1 9.2 74 163-245 1-74 (76)
74 cd05756 Ig1_IL1R_like First im 99.3 2E-11 4.4E-16 89.1 8.2 83 153-244 7-94 (94)
75 cd05742 Ig1_VEGFR_like First i 99.3 2.4E-11 5.2E-16 87.1 8.3 81 160-244 1-83 (84)
76 PF13855 LRR_8: Leucine rich r 99.2 4.9E-12 1.1E-16 84.6 3.4 57 67-123 2-61 (61)
77 cd05754 Ig3_Perlecan_like Thir 99.2 5.1E-11 1.1E-15 85.7 8.6 78 150-242 6-84 (85)
78 cd05750 Ig_Pro_neuregulin Immu 99.2 7.7E-11 1.7E-15 82.5 9.3 73 163-241 1-74 (75)
79 cd07702 Ig2_VEGFR-1 Second imm 99.2 5.1E-11 1.1E-15 81.9 7.9 69 163-243 1-69 (72)
80 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.5E-10 3.2E-15 82.8 10.4 81 160-245 1-83 (84)
81 cd05717 Ig1_Necl-1-3_like Firs 99.2 2.4E-10 5.3E-15 84.0 11.2 92 151-244 3-95 (95)
82 cd05729 Ig2_FGFR_like Second i 99.2 3.4E-10 7.4E-15 81.2 11.5 82 155-244 4-85 (85)
83 cd05752 Ig1_FcgammaR_like Frst 99.2 5E-11 1.1E-15 83.7 6.8 65 148-232 3-68 (78)
84 cd05734 Ig7_DSCAM Seventh immu 99.2 1.2E-10 2.5E-15 82.5 8.2 78 163-244 1-79 (79)
85 cd05733 Ig6_L1-CAM_like Sixth 99.2 8.9E-11 1.9E-15 82.5 7.4 67 163-238 1-71 (77)
86 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.8E-10 4E-15 80.8 8.9 67 163-238 1-71 (77)
87 cd05895 Ig_Pro_neuregulin-1 Im 99.2 2.3E-10 5E-15 80.3 9.4 74 163-241 1-75 (76)
88 cd04967 Ig1_Contactin First Ig 99.2 2.3E-10 5E-15 83.4 9.0 82 146-238 2-87 (91)
89 KOG3513|consensus 99.1 1.3E-10 2.9E-15 114.8 9.3 99 145-253 331-429 (1051)
90 cd05875 Ig6_hNeurofascin_like 99.1 4.4E-10 9.6E-15 78.9 9.5 68 163-239 1-72 (77)
91 cd04979 Ig_Semaphorin_C Immuno 99.1 5.8E-10 1.3E-14 80.9 8.9 85 152-246 3-88 (89)
92 cd07690 Ig1_CD4 First immunogl 99.1 6.1E-10 1.3E-14 80.8 7.6 82 155-236 2-91 (94)
93 cd05873 Ig_Sema4D_like Immunog 99.1 1.6E-09 3.6E-14 77.2 9.3 69 152-233 3-71 (87)
94 KOG4237|consensus 99.0 5.2E-11 1.1E-15 104.9 0.9 110 28-137 36-166 (498)
95 cd05753 Ig2_FcgammaR_like Seco 99.0 9.5E-10 2.1E-14 78.3 7.1 74 153-243 7-82 (83)
96 cd05757 Ig2_IL1R_like Second i 99.0 2.8E-09 6.1E-14 77.3 8.8 78 154-244 4-86 (92)
97 KOG3513|consensus 99.0 2.7E-09 5.9E-14 105.7 11.2 145 99-255 355-524 (1051)
98 PF13855 LRR_8: Leucine rich r 99.0 3.2E-10 7E-15 75.7 3.1 57 87-143 1-57 (61)
99 cd05881 Ig1_Necl-2 First (N-te 99.0 1.5E-08 3.2E-13 73.5 11.9 79 152-231 4-83 (95)
100 cd05862 Ig1_VEGFR First immuno 99.0 4.4E-09 9.5E-14 75.5 8.9 83 160-245 1-85 (86)
101 cd05871 Ig_Semaphorin_classIII 98.9 7.5E-09 1.6E-13 75.0 8.8 85 154-246 5-90 (91)
102 smart00410 IG_like Immunoglobu 98.9 4.8E-08 1E-12 69.5 12.2 83 153-244 2-85 (86)
103 smart00409 IG Immunoglobulin. 98.9 4.8E-08 1E-12 69.5 12.2 83 153-244 2-85 (86)
104 cd05727 Ig2_Contactin-2-like S 98.9 5.6E-09 1.2E-13 75.6 7.2 75 153-236 11-86 (96)
105 PF13895 Ig_2: Immunoglobulin 98.9 1.2E-08 2.6E-13 72.1 8.8 71 155-244 9-80 (80)
106 KOG4221|consensus 98.9 1.1E-08 2.4E-13 101.5 10.5 99 148-257 240-338 (1381)
107 smart00408 IGc2 Immunoglobulin 98.9 1.5E-08 3.3E-13 67.6 8.1 63 159-234 1-63 (63)
108 cd05845 Ig2_L1-CAM_like Second 98.8 2.1E-08 4.5E-13 72.5 7.6 73 152-235 10-84 (95)
109 cd05860 Ig4_SCFR Fourth immuno 98.8 1E-07 2.2E-12 69.2 10.2 89 153-245 11-100 (101)
110 cd04983 IgV_TCR_alpha_like Imm 98.8 8.2E-08 1.8E-12 72.4 9.9 84 150-233 3-93 (109)
111 cd05899 IgV_TCR_beta Immunoglo 98.7 7.6E-08 1.7E-12 72.7 8.9 83 150-233 3-95 (110)
112 cd04980 IgV_L_kappa Immunoglob 98.7 9.5E-08 2.1E-12 71.6 9.4 84 149-232 4-93 (106)
113 cd05714 Ig_CSPGs_LP Immunoglob 98.7 2E-07 4.2E-12 69.9 10.7 88 159-246 1-104 (106)
114 PHA02826 IL-1 receptor-like pr 98.7 1.1E-07 2.3E-12 81.1 9.8 94 153-246 30-134 (227)
115 PHA02826 IL-1 receptor-like pr 98.7 9.1E-08 2E-12 81.5 9.2 70 153-233 137-211 (227)
116 PF00047 ig: Immunoglobulin do 98.7 4.9E-08 1.1E-12 65.8 6.2 61 160-229 1-64 (64)
117 cd05877 Ig_LP_like Immunoglobu 98.7 3.5E-07 7.5E-12 68.6 10.8 88 159-246 1-104 (106)
118 cd04984 IgV_L_lambda Immunoglo 98.7 2.7E-07 6E-12 68.0 9.9 77 156-232 2-85 (98)
119 cd05885 Ig2_Necl-4 Second immu 98.7 2.5E-07 5.5E-12 64.6 9.0 66 163-235 2-68 (80)
120 cd05879 Ig_P0 Immunoglobulin ( 98.7 2.6E-07 5.6E-12 70.0 9.7 84 152-235 5-105 (116)
121 PHA02785 IL-beta-binding prote 98.6 1.9E-07 4.1E-12 84.6 10.2 82 151-236 226-318 (326)
122 cd05900 Ig_Aggrecan Immunoglob 98.6 5.8E-07 1.3E-11 67.5 10.4 88 159-246 1-110 (112)
123 cd05775 Ig_SLAM-CD84_like_N N- 98.6 3.8E-07 8.2E-12 67.0 8.8 87 158-244 2-96 (97)
124 cd05880 Ig_EVA1 Immunoglobulin 98.6 5.4E-07 1.2E-11 68.4 9.8 85 151-235 4-104 (115)
125 cd04982 IgV_TCR_gamma Immunogl 98.6 3.8E-07 8.3E-12 69.6 9.0 82 150-231 3-98 (116)
126 cd05718 Ig1_PVR_like First imm 98.6 9.2E-07 2E-11 65.2 10.4 84 161-244 1-97 (98)
127 cd05713 Ig_MOG_like Immunoglob 98.6 6.1E-07 1.3E-11 66.4 9.4 85 160-244 1-99 (100)
128 cd05715 Ig_P0-like Immunoglobu 98.6 7.4E-07 1.6E-11 67.9 9.9 85 151-235 4-105 (116)
129 cd05897 Ig2_IL1R2_like Second 98.5 5.3E-07 1.1E-11 65.4 8.4 76 154-239 4-84 (95)
130 cd05872 Ig_Sema4B_like Immunog 98.5 4.4E-07 9.6E-12 64.3 7.6 78 153-244 4-82 (85)
131 cd05878 Ig_Aggrecan_like Immun 98.5 1.4E-06 3.1E-11 65.5 10.9 88 159-246 1-108 (110)
132 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 6.4E-07 1.4E-11 65.2 8.5 85 154-244 9-104 (104)
133 PF12799 LRR_4: Leucine Rich r 98.5 4.2E-08 9E-13 60.2 1.7 40 87-127 1-40 (44)
134 KOG0617|consensus 98.5 1.6E-08 3.4E-13 79.6 -0.3 100 47-147 35-144 (264)
135 cd05888 Ig1_Nectin-4_like Frst 98.5 1.4E-06 3E-11 64.4 10.2 83 162-244 2-99 (100)
136 PF13927 Ig_3: Immunoglobulin 98.5 2.3E-07 5E-12 64.4 5.7 73 146-231 2-75 (75)
137 cd00099 IgV Immunoglobulin var 98.5 8.7E-07 1.9E-11 66.2 9.2 80 155-234 1-91 (105)
138 PF14580 LRR_9: Leucine-rich r 98.5 3.9E-08 8.5E-13 79.9 1.7 92 48-140 22-118 (175)
139 cd05741 Ig_CEACAM_D1_like Firs 98.5 7.1E-07 1.5E-11 64.9 7.9 81 160-243 1-91 (92)
140 cd05759 Ig2_KIRREL3-like Secon 98.5 1.1E-06 2.4E-11 62.4 8.3 76 163-243 2-81 (82)
141 PHA02987 Ig domain OX-2-like p 98.5 1.6E-06 3.4E-11 69.5 9.8 96 153-248 23-125 (189)
142 cd05774 Ig_CEACAM_D1 First imm 98.5 2.2E-06 4.7E-11 63.6 10.0 87 154-243 7-104 (105)
143 PLN00113 leucine-rich repeat r 98.5 1.1E-07 2.5E-12 99.3 4.2 77 67-143 476-555 (968)
144 PHA02785 IL-beta-binding prote 98.4 1.4E-06 3E-11 79.0 9.4 81 154-248 35-120 (326)
145 cd07706 IgV_TCR_delta Immunogl 98.4 2.5E-06 5.5E-11 65.0 9.3 83 150-232 4-94 (116)
146 KOG0444|consensus 98.4 5.3E-08 1.1E-12 91.2 -0.2 79 46-125 104-187 (1255)
147 PF07686 V-set: Immunoglobulin 98.4 2.4E-06 5.1E-11 64.7 8.9 93 152-244 8-114 (114)
148 cd05886 Ig1_Nectin-1_like Firs 98.4 6.8E-06 1.5E-10 60.3 10.9 82 162-244 2-98 (99)
149 cd05846 Ig1_MRC-OX-2_like Firs 98.4 3.5E-06 7.5E-11 62.0 9.3 85 160-244 1-96 (97)
150 cd05751 Ig1_LILRB1_like First 98.4 1.1E-06 2.4E-11 63.7 6.6 66 154-232 10-75 (91)
151 cd05902 Ig_Neurocan Immunoglob 98.3 7.8E-06 1.7E-10 61.2 10.5 87 160-246 2-108 (110)
152 KOG4222|consensus 98.3 1E-06 2.2E-11 87.5 7.1 145 101-257 158-325 (1281)
153 cd05720 Ig_CD8_alpha Immunoglo 98.3 3.1E-06 6.6E-11 63.1 8.0 76 156-231 2-90 (104)
154 PF14580 LRR_9: Leucine-rich r 98.3 1.4E-07 2.9E-12 76.7 0.6 87 51-139 3-92 (175)
155 cd07694 Ig2_CD4 Second immunog 98.3 1.1E-05 2.4E-10 56.5 9.8 77 154-245 8-86 (88)
156 KOG4221|consensus 98.3 7.1E-07 1.5E-11 89.1 5.3 135 101-247 263-418 (1381)
157 PLN03150 hypothetical protein; 98.3 8.5E-07 1.8E-11 87.4 5.8 58 67-124 443-503 (623)
158 PLN03150 hypothetical protein; 98.3 1.8E-06 3.9E-11 85.2 7.8 77 67-143 419-498 (623)
159 KOG0618|consensus 98.3 6.2E-08 1.3E-12 94.4 -2.4 66 70-136 363-431 (1081)
160 cd05712 Ig_Siglec_N Immunoglob 98.3 5.6E-06 1.2E-10 63.4 8.6 82 151-232 5-102 (119)
161 cd07700 IgV_CD8_beta Immunoglo 98.3 6.5E-06 1.4E-10 61.7 8.7 76 156-231 2-93 (107)
162 KOG0444|consensus 98.3 1.5E-07 3.3E-12 88.2 -0.3 83 48-130 81-169 (1255)
163 cd05901 Ig_Versican Immunoglob 98.2 2.4E-05 5.3E-10 58.8 11.0 39 208-246 77-115 (117)
164 PRK15387 E3 ubiquitin-protein 98.2 1.1E-06 2.3E-11 87.4 4.5 84 39-128 196-279 (788)
165 KOG4222|consensus 98.2 3E-06 6.5E-11 84.3 7.2 102 149-260 135-238 (1281)
166 cd05716 Ig_pIgR Immunoglobulin 98.2 1E-05 2.2E-10 59.5 8.3 79 155-233 2-87 (98)
167 KOG4579|consensus 98.2 1.4E-07 3E-12 71.6 -1.8 85 47-132 55-144 (177)
168 PRK15370 E3 ubiquitin-protein 98.2 1.7E-06 3.6E-11 86.2 5.2 87 47-136 180-266 (754)
169 cd05887 Ig1_Nectin-3_like Firs 98.2 2.6E-05 5.6E-10 56.7 10.0 84 161-244 1-95 (96)
170 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 4E-11 52.9 3.3 38 67-104 2-41 (44)
171 PLN00113 leucine-rich repeat r 98.2 2.2E-06 4.7E-11 89.7 5.3 66 67-132 141-209 (968)
172 PF01462 LRRNT: Leucine rich r 98.1 1.8E-06 3.9E-11 47.0 2.4 28 34-65 1-28 (28)
173 PRK15370 E3 ubiquitin-protein 98.1 1.6E-06 3.5E-11 86.4 3.7 82 47-131 201-282 (754)
174 smart00013 LRRNT Leucine rich 98.1 3.4E-06 7.3E-11 48.1 3.3 32 34-69 1-32 (33)
175 cd05761 Ig2_Necl-1-4_like Seco 98.0 4.6E-05 1E-09 54.0 8.8 68 163-235 2-70 (82)
176 cd04981 IgV_H Immunoglobulin ( 98.0 5.2E-05 1.1E-09 57.7 9.3 81 151-231 3-97 (117)
177 cd00098 IgC Immunoglobulin Con 98.0 2.7E-05 5.9E-10 56.9 7.5 72 158-234 11-86 (95)
178 cd05883 Ig2_Necl-2 Second immu 98.0 0.00012 2.7E-09 51.3 9.5 78 163-246 2-81 (82)
179 KOG0618|consensus 98.0 1.2E-06 2.6E-11 85.7 -1.0 94 48-144 362-461 (1081)
180 KOG0617|consensus 97.9 1.4E-06 3.1E-11 68.8 -0.6 90 47-137 58-152 (264)
181 cd05711 Ig_FcalphaRI Immunoglo 97.9 4.5E-05 9.7E-10 55.6 7.3 68 153-230 8-75 (94)
182 KOG0472|consensus 97.9 4.2E-06 9E-11 74.8 1.5 77 47-124 437-541 (565)
183 cd05889 Ig1_DNAM-1_like First 97.9 0.0002 4.4E-09 52.1 9.6 82 161-242 1-93 (96)
184 PHA03376 BARF1; Provisional 97.8 0.00022 4.7E-09 57.2 10.1 85 154-238 20-115 (221)
185 PRK15387 E3 ubiquitin-protein 97.8 9.1E-06 2E-10 80.9 2.0 71 66-142 382-452 (788)
186 KOG0472|consensus 97.8 9.8E-07 2.1E-11 78.7 -4.3 83 47-129 185-270 (565)
187 smart00406 IGv Immunoglobulin 97.8 6.2E-05 1.3E-09 52.9 5.5 68 162-229 1-81 (81)
188 cd07705 Ig2_Necl-1 Second immu 97.7 0.00021 4.6E-09 50.7 7.9 67 163-234 2-70 (83)
189 cd00096 Ig Immunoglobulin doma 97.7 0.00016 3.5E-09 48.6 7.2 67 163-234 1-67 (74)
190 KOG1259|consensus 97.7 7.3E-06 1.6E-10 70.6 -0.2 79 48-127 287-368 (490)
191 PF08205 C2-set_2: CD80-like C 97.6 0.00028 6.1E-09 50.8 7.1 71 160-235 14-86 (89)
192 cd05884 Ig2_Necl-3 Second immu 97.6 0.00054 1.2E-08 48.5 8.0 66 163-233 2-69 (83)
193 KOG1644|consensus 97.5 3.8E-05 8.2E-10 62.5 1.7 61 67-127 43-104 (233)
194 cd05771 IgC_Tapasin_R Tapasin- 97.5 0.00066 1.4E-08 53.4 8.5 84 145-233 38-131 (139)
195 KOG1859|consensus 97.5 6.6E-06 1.4E-10 78.8 -3.5 80 47-127 166-248 (1096)
196 cd05755 Ig2_ICAM-1_like Second 97.5 0.001 2.2E-08 48.6 8.7 75 153-235 9-87 (100)
197 KOG1259|consensus 97.5 2.7E-05 5.9E-10 67.1 0.1 58 68-127 286-345 (490)
198 PF00560 LRR_1: Leucine Rich R 97.4 6E-05 1.3E-09 38.5 1.2 22 88-110 1-22 (22)
199 KOG0532|consensus 97.4 3.9E-05 8.4E-10 71.7 0.6 101 37-144 139-243 (722)
200 COG4886 Leucine-rich repeat (L 97.3 9.7E-05 2.1E-09 69.2 2.2 92 47-139 118-216 (394)
201 smart00369 LRR_TYP Leucine-ric 97.3 0.00012 2.6E-09 39.2 1.4 23 86-108 1-23 (26)
202 smart00370 LRR Leucine-rich re 97.3 0.00012 2.6E-09 39.2 1.4 23 86-108 1-23 (26)
203 cd05771 IgC_Tapasin_R Tapasin- 97.2 0.00022 4.8E-09 56.2 2.6 40 211-250 2-41 (139)
204 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.0045 9.8E-08 46.1 9.0 80 151-230 4-94 (115)
205 KOG0532|consensus 97.2 7E-05 1.5E-09 70.0 -0.8 105 37-145 114-221 (722)
206 cd05772 IgC_SIRP Signal-regula 97.1 0.0057 1.2E-07 45.9 9.1 73 155-233 16-92 (111)
207 PLN03210 Resistant to P. syrin 97.0 0.0016 3.5E-08 69.3 7.6 89 47-138 591-684 (1153)
208 PHA02633 hypothetical protein; 97.0 0.0024 5.3E-08 41.2 5.3 41 208-248 16-56 (63)
209 KOG0531|consensus 97.0 0.00026 5.6E-09 66.7 1.3 80 47-128 97-179 (414)
210 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.0046 9.9E-08 44.8 7.4 66 160-233 14-83 (93)
211 smart00407 IGc1 Immunoglobulin 97.0 0.0076 1.6E-07 41.7 8.1 66 163-233 2-71 (75)
212 KOG4579|consensus 96.9 0.00012 2.6E-09 56.0 -1.6 91 49-141 31-129 (177)
213 PF13504 LRR_7: Leucine rich r 96.8 0.00061 1.3E-08 32.2 1.1 17 87-103 1-17 (17)
214 cd05719 Ig2_PVR_like Second im 96.8 0.011 2.4E-07 42.9 8.3 67 160-234 15-83 (95)
215 KOG1644|consensus 96.7 0.002 4.3E-08 52.7 4.1 96 47-143 44-148 (233)
216 KOG1859|consensus 96.7 0.00025 5.4E-09 68.4 -1.3 81 47-127 211-295 (1096)
217 cd07691 Ig_CD3_gamma_delta Imm 96.7 0.0061 1.3E-07 40.5 5.4 50 159-231 5-54 (69)
218 cd05847 IgC_CH2_IgE CH2 domain 96.7 0.014 3E-07 42.3 7.9 72 159-235 13-88 (94)
219 KOG2123|consensus 96.7 8.4E-05 1.8E-09 63.5 -4.3 85 40-124 14-101 (388)
220 PF00560 LRR_1: Leucine Rich R 96.6 0.00095 2E-08 34.0 0.9 22 112-134 1-22 (22)
221 KOG0531|consensus 96.6 0.0012 2.5E-08 62.3 2.2 78 50-129 77-158 (414)
222 cd07696 IgC_CH3 CH3 domain (th 96.6 0.019 4.1E-07 41.8 8.1 76 153-233 7-86 (96)
223 cd07692 Ig_CD3_epsilon Immunog 96.5 0.0058 1.3E-07 40.3 4.6 53 157-232 4-56 (65)
224 PF08204 V-set_CD47: CD47 immu 96.5 0.0075 1.6E-07 46.0 5.6 90 158-249 25-124 (130)
225 cd07699 IgC_L Immunoglobulin C 96.5 0.011 2.4E-07 43.4 6.4 73 156-233 13-89 (100)
226 cd07703 Ig2_Nectin-2_like Seco 96.4 0.023 4.9E-07 41.3 7.3 69 160-235 15-84 (95)
227 cd05768 IgC_CH4 CH4 domain (fo 96.3 0.014 3.1E-07 43.0 6.2 73 156-233 12-91 (102)
228 cd05766 IgC_MHC_II_beta Class 96.3 0.041 8.9E-07 39.9 8.3 68 158-233 12-83 (94)
229 COG4886 Leucine-rich repeat (L 96.2 0.0026 5.6E-08 59.6 2.1 80 48-128 189-272 (394)
230 PF07654 C1-set: Immunoglobuli 96.2 0.022 4.8E-07 40.2 6.4 68 158-233 6-77 (83)
231 PF13306 LRR_5: Leucine rich r 96.1 0.0065 1.4E-07 46.8 3.8 64 68-133 37-102 (129)
232 PLN03210 Resistant to P. syrin 96.1 0.011 2.3E-07 63.2 6.3 93 48-142 805-900 (1153)
233 smart00370 LRR Leucine-rich re 96.0 0.0019 4.2E-08 34.4 0.3 23 110-132 1-23 (26)
234 smart00369 LRR_TYP Leucine-ric 96.0 0.0019 4.2E-08 34.4 0.3 23 110-132 1-23 (26)
235 cd05769 IgC_TCR_beta T cell re 96.0 0.045 9.7E-07 41.3 7.6 76 155-235 13-94 (115)
236 cd05767 IgC_MHC_II_alpha Class 95.9 0.037 8.1E-07 40.1 6.4 68 158-233 13-84 (94)
237 cd05770 IgC_beta2m Class I maj 95.8 0.047 1E-06 39.5 6.7 67 158-232 13-82 (93)
238 KOG4597|consensus 95.8 0.017 3.7E-07 53.0 5.2 95 146-247 197-294 (560)
239 PF13306 LRR_5: Leucine rich r 95.7 0.019 4.2E-07 44.1 4.8 87 47-137 37-128 (129)
240 cd00116 LRR_RI Leucine-rich re 95.7 0.0057 1.2E-07 55.3 2.0 79 47-125 83-179 (319)
241 cd04986 IgC_CH2 CH2 domain (se 95.6 0.044 9.4E-07 40.0 5.9 70 157-233 16-89 (99)
242 cd07704 Ig2_Nectin-3-4_like Se 95.5 0.1 2.2E-06 37.9 7.5 74 153-233 9-84 (97)
243 KOG3207|consensus 95.4 0.005 1.1E-07 56.2 0.7 69 59-127 239-317 (505)
244 cd04985 IgC_CH1 CH1 domain (fi 95.3 0.11 2.4E-06 37.7 7.3 69 159-233 15-87 (95)
245 PF02480 Herpes_gE: Alphaherpe 95.3 0.02 4.4E-07 53.7 4.3 25 208-232 267-291 (439)
246 cd00116 LRR_RI Leucine-rich re 95.3 0.0048 1E-07 55.8 -0.0 58 67-124 82-150 (319)
247 PHA03042 CD47-like protein; Pr 95.2 0.39 8.4E-06 41.2 11.1 70 160-245 31-105 (286)
248 PF13504 LRR_7: Leucine rich r 95.2 0.007 1.5E-07 28.5 0.4 17 111-127 1-17 (17)
249 PHA02982 hypothetical protein; 95.1 0.1 2.2E-06 42.8 6.9 83 153-235 32-125 (251)
250 KOG4658|consensus 95.0 0.025 5.4E-07 58.0 4.3 89 48-138 526-621 (889)
251 cd07697 IgC_TCR_gamma T cell r 95.0 0.13 2.8E-06 37.4 6.8 69 156-232 12-84 (96)
252 smart00365 LRR_SD22 Leucine-ri 94.8 0.02 4.4E-07 30.3 1.6 18 86-103 1-18 (26)
253 PRK15386 type III secretion pr 94.8 0.039 8.5E-07 51.0 4.3 67 47-123 54-124 (426)
254 KOG4658|consensus 94.7 0.012 2.5E-07 60.4 1.1 96 48-144 548-651 (889)
255 KOG2739|consensus 94.1 0.021 4.6E-07 48.7 1.1 75 66-140 65-148 (260)
256 KOG3207|consensus 94.0 0.021 4.6E-07 52.2 1.0 44 84-127 219-262 (505)
257 PRK15386 type III secretion pr 93.9 0.063 1.4E-06 49.7 3.8 50 47-100 74-125 (426)
258 smart00364 LRR_BAC Leucine-ric 93.9 0.034 7.4E-07 29.3 1.2 18 87-104 2-19 (26)
259 KOG1480|consensus 93.0 0.056 1.2E-06 52.8 2.0 74 151-236 135-209 (909)
260 KOG0473|consensus 93.0 0.0058 1.2E-07 51.2 -4.0 83 57-141 30-117 (326)
261 cd07689 Ig2_VCAM-1 Second immu 92.9 0.78 1.7E-05 33.3 7.3 69 157-231 12-84 (99)
262 PF05790 C2-set: Immunoglobuli 92.5 2.6 5.6E-05 29.4 9.3 34 211-244 44-78 (80)
263 KOG2982|consensus 92.3 0.062 1.4E-06 46.9 1.2 58 67-124 72-134 (418)
264 PF02439 Adeno_E3_CR2: Adenovi 92.2 0.055 1.2E-06 31.1 0.5 10 261-270 7-16 (38)
265 TIGR00864 PCC polycystin catio 92.2 0.054 1.2E-06 60.5 0.9 35 93-127 1-35 (2740)
266 PF07354 Sp38: Zona-pellucida- 92.1 0.26 5.7E-06 42.1 4.6 50 173-233 11-60 (271)
267 PHA03286 envelope glycoprotein 91.7 0.43 9.4E-06 43.9 5.8 32 211-242 308-340 (492)
268 PTZ00370 STEVOR; Provisional 91.6 0.071 1.5E-06 46.0 0.8 32 261-292 257-288 (296)
269 TIGR01478 STEVOR variant surfa 91.6 0.065 1.4E-06 46.1 0.6 31 261-291 261-291 (295)
270 KOG1909|consensus 91.5 0.12 2.6E-06 46.1 2.1 58 67-124 158-226 (382)
271 KOG2739|consensus 91.4 0.091 2E-06 45.0 1.2 60 67-127 44-107 (260)
272 KOG3515|consensus 91.2 0.28 6E-06 48.7 4.4 78 155-246 17-96 (741)
273 PF13516 LRR_6: Leucine Rich r 90.6 0.14 3E-06 26.4 1.0 15 87-101 2-16 (24)
274 KOG2123|consensus 90.6 0.048 1E-06 47.2 -1.2 71 67-139 20-92 (388)
275 PHA03283 envelope glycoprotein 90.5 5.3 0.00012 37.8 11.7 32 208-239 313-345 (542)
276 PF04478 Mid2: Mid2 like cell 90.2 0.2 4.3E-06 39.1 2.0 10 279-288 71-80 (154)
277 PF08693 SKG6: Transmembrane a 90.0 0.42 9.1E-06 28.1 2.7 6 280-285 33-38 (40)
278 KOG1026|consensus 89.9 0.42 9E-06 47.6 4.4 148 78-247 100-275 (774)
279 PF11465 Receptor_2B4: Natural 89.1 1.8 3.8E-05 31.8 6.0 40 206-245 67-107 (108)
280 PF15102 TMEM154: TMEM154 prot 88.8 0.47 1E-05 36.8 3.1 15 273-287 72-86 (146)
281 PF15050 SCIMP: SCIMP protein 88.0 0.75 1.6E-05 34.0 3.5 8 359-366 115-122 (133)
282 KOG3515|consensus 88.0 1.8 3.9E-05 43.2 7.2 77 155-232 107-185 (741)
283 PTZ00382 Variant-specific surf 87.4 0.32 6.9E-06 35.3 1.4 12 275-286 83-94 (96)
284 smart00368 LRR_RI Leucine rich 87.4 0.4 8.6E-06 25.8 1.4 15 87-101 2-16 (28)
285 PHA03052 Hypothetical protein; 86.8 3.7 7.9E-05 27.2 5.8 35 152-186 4-41 (69)
286 PHA03189 UL14 tegument protein 86.2 10 0.00022 33.3 9.9 21 216-236 139-159 (348)
287 PF08374 Protocadherin: Protoc 86.1 1.1 2.4E-05 37.1 4.0 16 350-365 144-159 (221)
288 PHA03240 envelope glycoprotein 85.5 3.6 7.8E-05 34.0 6.5 71 154-226 32-121 (258)
289 KOG3763|consensus 85.5 0.33 7.1E-06 46.1 0.7 58 67-125 219-284 (585)
290 PHA03273 envelope glycoprotein 84.9 7.1 0.00015 36.5 8.9 18 166-183 357-376 (486)
291 KOG1909|consensus 84.9 0.36 7.8E-06 43.2 0.7 95 48-142 95-220 (382)
292 KOG0473|consensus 84.8 0.042 9.2E-07 46.2 -4.8 77 48-125 45-125 (326)
293 PHA03269 envelope glycoprotein 84.0 17 0.00037 34.3 10.9 20 166-185 449-470 (566)
294 PF10873 DUF2668: Protein of u 83.8 3.8 8.2E-05 31.6 5.6 9 331-339 124-132 (155)
295 PF05454 DAG1: Dystroglycan (D 83.2 0.37 8E-06 42.4 0.0 16 212-229 95-110 (290)
296 PF02124 Marek_A: Marek's dise 82.9 26 0.00056 29.4 10.6 21 165-185 94-116 (211)
297 PHA03281 envelope glycoprotein 81.9 4.7 0.0001 38.3 6.6 35 208-242 473-508 (642)
298 PHA03271 envelope glycoprotein 81.0 33 0.00072 31.8 11.3 20 167-186 367-387 (490)
299 PHA03099 epidermal growth fact 80.7 2.4 5.2E-05 31.9 3.5 26 221-246 63-89 (139)
300 PF15096 G6B: G6B family 80.6 6.4 0.00014 31.8 6.0 19 155-173 6-24 (224)
301 PF06328 Lep_receptor_Ig: Ig-l 79.9 14 0.0003 26.4 7.1 67 151-228 9-80 (89)
302 PF06697 DUF1191: Protein of u 78.1 2.7 5.8E-05 36.7 3.6 8 224-231 175-182 (278)
303 KOG3665|consensus 77.7 1.4 3.1E-05 44.2 2.1 77 65-144 147-229 (699)
304 PHA03282 envelope glycoprotein 76.5 7.5 0.00016 36.3 6.0 33 208-240 331-364 (540)
305 COG5238 RNA1 Ran GTPase-activa 75.2 1.1 2.4E-05 38.9 0.5 14 111-124 214-227 (388)
306 PF02009 Rifin_STEVOR: Rifin/s 74.4 0.96 2.1E-05 40.2 -0.1 15 274-288 272-286 (299)
307 PF14991 MLANA: Protein melan- 73.7 0.74 1.6E-05 33.7 -0.8 13 280-292 43-55 (118)
308 PHA02914 Immunoglobulin-like d 71.9 15 0.00033 33.7 6.7 82 153-235 272-371 (500)
309 KOG2982|consensus 70.9 2.8 6.1E-05 37.1 1.9 77 49-126 75-161 (418)
310 KOG0196|consensus 69.5 48 0.001 33.8 10.0 37 210-246 498-536 (996)
311 KOG3665|consensus 68.9 2.4 5.2E-05 42.7 1.3 42 83-124 216-263 (699)
312 PF03921 ICAM_N: Intercellular 68.5 41 0.00088 24.1 11.8 81 150-248 8-89 (91)
313 PF12877 DUF3827: Domain of un 68.4 16 0.00034 35.9 6.4 16 1-16 23-38 (684)
314 PF13908 Shisa: Wnt and FGF in 67.8 22 0.00047 29.1 6.5 13 261-273 79-91 (179)
315 PF03302 VSP: Giardia variant- 65.3 3.4 7.4E-05 38.6 1.5 32 256-287 365-396 (397)
316 PF01299 Lamp: Lysosome-associ 65.0 5 0.00011 36.1 2.4 6 224-229 224-229 (306)
317 PF07204 Orthoreo_P10: Orthore 62.5 2.5 5.3E-05 29.9 -0.0 14 222-235 16-30 (98)
318 PHA03270 envelope glycoprotein 61.3 1.3E+02 0.0027 28.3 10.4 21 166-186 340-361 (466)
319 PHA02914 Immunoglobulin-like d 60.7 70 0.0015 29.6 8.6 92 153-245 19-117 (500)
320 COG5238 RNA1 Ran GTPase-activa 58.5 4 8.6E-05 35.7 0.5 77 48-124 95-198 (388)
321 KOG2120|consensus 56.5 5.2 0.00011 35.4 0.9 69 63-133 283-358 (419)
322 PF00558 Vpu: Vpu protein; In 55.9 8.7 0.00019 26.7 1.7 20 261-280 8-27 (81)
323 PF12191 stn_TNFRSF12A: Tumour 54.1 6 0.00013 29.8 0.8 12 278-289 98-109 (129)
324 PF05545 FixQ: Cbb3-type cytoc 53.9 7.1 0.00015 24.2 1.0 14 273-286 20-33 (49)
325 PHA03112 IL-18 binding protein 51.2 65 0.0014 25.1 6.0 27 157-183 35-63 (141)
326 PHA02865 MHC-like TNF binding 50.8 50 0.0011 30.0 6.1 21 162-182 216-238 (338)
327 TIGR00864 PCC polycystin catio 49.9 7.8 0.00017 44.6 1.2 28 73-100 2-32 (2740)
328 cd05890 Ig2_Nectin-1_like Seco 49.1 1E+02 0.0022 22.3 6.4 72 162-242 22-96 (98)
329 PF06809 NPDC1: Neural prolife 48.6 25 0.00054 31.2 3.8 14 29-42 36-49 (341)
330 PF15102 TMEM154: TMEM154 prot 47.5 21 0.00046 27.9 2.9 26 264-289 66-91 (146)
331 PF06832 BiPBP_C: Penicillin-B 46.3 1E+02 0.0022 21.6 7.3 55 162-237 31-85 (89)
332 PF05955 Herpes_gp2: Equine he 45.5 1.7E+02 0.0036 23.8 8.4 63 166-233 113-179 (226)
333 PHA03265 envelope glycoprotein 45.4 7.1 0.00015 35.0 0.1 14 276-289 366-379 (402)
334 PF02440 Adeno_E3_CR1: Adenovi 44.0 65 0.0014 21.2 4.4 21 157-181 2-22 (63)
335 PF06365 CD34_antigen: CD34/Po 41.7 21 0.00046 29.7 2.3 24 259-282 102-125 (202)
336 PF11669 WBP-1: WW domain-bind 41.1 34 0.00075 25.1 3.1 11 278-288 37-47 (102)
337 PTZ00046 rifin; Provisional 40.0 13 0.00028 33.9 0.8 13 276-288 333-345 (358)
338 KOG2120|consensus 39.2 4 8.6E-05 36.2 -2.4 53 68-120 187-243 (419)
339 PF05725 FNIP: FNIP Repeat; I 38.4 36 0.00078 20.3 2.4 12 62-73 8-19 (44)
340 PHA03283 envelope glycoprotein 38.1 95 0.0021 29.9 6.1 39 208-246 132-170 (542)
341 KOG3763|consensus 37.7 14 0.0003 35.6 0.7 36 84-121 215-254 (585)
342 PF12768 Rax2: Cortical protei 37.5 29 0.00062 30.8 2.6 19 86-104 63-81 (281)
343 PF06084 Cytomega_TRL10: Cytom 37.5 86 0.0019 23.1 4.5 6 164-169 19-24 (150)
344 TIGR01477 RIFIN variant surfac 37.3 15 0.00032 33.4 0.8 13 276-288 328-340 (353)
345 KOG3864|consensus 36.8 8.7 0.00019 32.0 -0.7 51 68-122 103-162 (221)
346 PF07213 DAP10: DAP10 membrane 36.6 16 0.00036 25.1 0.7 15 274-288 48-62 (79)
347 PF15347 PAG: Phosphoprotein a 35.2 34 0.00074 31.1 2.6 35 257-291 15-49 (428)
348 PF05624 LSR: Lipolysis stimul 35.2 51 0.0011 20.0 2.5 12 31-42 23-34 (49)
349 smart00367 LRR_CC Leucine-rich 32.5 30 0.00066 17.8 1.2 12 87-98 2-13 (26)
350 KOG3637|consensus 32.3 52 0.0011 35.0 3.9 18 259-276 978-995 (1030)
351 PF06679 DUF1180: Protein of u 31.2 66 0.0014 25.9 3.4 7 330-336 154-160 (163)
352 TIGR02167 Liste_lipo_26 bacter 30.9 24 0.00053 18.5 0.7 14 83-96 2-15 (26)
353 PF06364 DUF1068: Protein of u 30.2 47 0.001 26.5 2.4 12 31-42 40-52 (176)
354 PHA03282 envelope glycoprotein 30.0 1.2E+02 0.0025 28.9 5.2 37 209-245 123-161 (540)
355 KOG1226|consensus 29.1 95 0.0021 31.4 4.7 11 220-230 668-678 (783)
356 TIGR01477 RIFIN variant surfac 28.7 20 0.00044 32.5 0.2 28 266-293 315-342 (353)
357 PTZ00046 rifin; Provisional 28.5 21 0.00044 32.6 0.2 29 266-294 320-348 (358)
358 PHA03376 BARF1; Provisional 28.5 46 0.001 27.5 2.1 26 160-185 139-164 (221)
359 PF11857 DUF3377: Domain of un 28.3 2E+02 0.0043 19.7 4.7 8 259-266 31-38 (74)
360 PF15065 NCU-G1: Lysosomal tra 27.8 70 0.0015 29.4 3.4 15 273-287 334-348 (350)
361 KOG1219|consensus 27.2 71 0.0015 37.0 3.8 6 224-229 3962-3967(4289)
362 PF05083 LST1: LST-1 protein; 26.5 31 0.00067 23.0 0.7 13 339-351 61-73 (74)
363 PF01102 Glycophorin_A: Glycop 26.3 20 0.00043 27.3 -0.3 17 273-289 81-97 (122)
364 COG5475 Uncharacterized small 26.1 1.6E+02 0.0036 18.7 3.8 26 211-238 19-44 (60)
365 PF05283 MGC-24: Multi-glycosy 25.9 35 0.00076 28.1 1.1 24 261-284 161-184 (186)
366 PF14610 DUF4448: Protein of u 25.2 35 0.00076 28.2 1.0 7 59-65 21-27 (189)
367 PF07473 Toxin_11: Spasmodic p 24.9 50 0.0011 17.5 1.1 14 30-43 7-20 (28)
368 COG1470 Predicted membrane pro 24.5 2.1E+02 0.0046 27.3 5.8 35 211-245 447-481 (513)
369 PF04478 Mid2: Mid2 like cell 23.0 62 0.0013 25.6 1.9 32 259-292 50-81 (154)
370 PF04689 S1FA: DNA binding pro 22.5 86 0.0019 20.5 2.1 29 256-284 12-40 (69)
371 PF08094 Toxin_24: Conotoxin T 21.9 94 0.002 16.7 1.8 21 29-56 3-23 (33)
372 PF14991 MLANA: Protein melan- 21.1 28 0.0006 25.8 -0.3 32 262-293 28-59 (118)
373 PF04971 Lysis_S: Lysis protei 20.8 61 0.0013 21.7 1.2 8 280-287 53-60 (68)
374 COG4736 CcoQ Cbb3-type cytochr 20.3 54 0.0012 21.4 0.9 18 271-288 18-35 (60)
No 1
>KOG4194|consensus
Probab=99.94 E-value=4.2e-26 Score=207.24 Aligned_cols=112 Identities=27% Similarity=0.436 Sum_probs=87.5
Q ss_pred CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224 (369)
Q Consensus 145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 224 (369)
.|.+...|.+++...|+.++|.|.++|.|.|.|.|.+.|+.--.. ...+| ++.......+.|.+|+.+|+|.
T Consensus 612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA------A~eRR--l~Vmpedd~f~Itnvk~eD~Gi 683 (873)
T KOG4194|consen 612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA------ARERR--LHVMPEDDVFFITNVKIEDQGI 683 (873)
T ss_pred cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch------hhhhe--eeecCCCCEEEEecccccccce
Confidence 477888899999999999999999999999999999988652111 11122 2334456689999999999999
Q ss_pred EEEEEEeCCceEEEEEEEEEeecCCcccCCCCceEeehhh
Q psy12695 225 YTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264 (369)
Q Consensus 225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~ 264 (369)
|+|+|.|.+|..++++++.|...|.+...-.+..+..+-.
T Consensus 684 YtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get 723 (873)
T KOG4194|consen 684 YTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGET 723 (873)
T ss_pred eEEeeeccccceeeceEEEEecCCcccccccceEEEecce
Confidence 9999999999999999999999876554444444444433
No 2
>KOG4237|consensus
Probab=99.77 E-value=1.1e-19 Score=158.72 Aligned_cols=107 Identities=30% Similarity=0.494 Sum_probs=98.4
Q ss_pred cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCcc
Q psy12695 30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHI 106 (369)
Q Consensus 30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 106 (369)
..+..||..|.|+... +..|+|++.||++||.++|.+++.|+|..|+| .+++|..+++|++||||+|+|+.|.+++
T Consensus 32 ~~~~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A 110 (498)
T KOG4237|consen 32 HSASACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA 110 (498)
T ss_pred hccccCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh
Confidence 4577999999999654 67999999999999999999999999999995 5899999999999999999999999999
Q ss_pred cccccccccccccc-cceecccCCcccccCcC
Q psy12695 107 LDSILELRELKLSG-NPIQKITHEAFINVPKL 137 (369)
Q Consensus 107 f~~l~~L~~L~L~~-N~l~~~~~~~f~~l~~l 137 (369)
|.+|.+|.+|-|.+ |+|+.++.++|.+|..+
T Consensus 111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 99999998887765 99999999999998774
No 3
>KOG4194|consensus
Probab=99.70 E-value=4.3e-17 Score=149.07 Aligned_cols=93 Identities=26% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 224 (369)
|.+..+-.+..+..|+++.|.|.+.|.|. |.+.|+|+++.+.-..... ...++.-|.+.+...+|+|.
T Consensus 707 p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~-----------f~d~dQllvv~~~~~~daG~ 775 (873)
T KOG4194|consen 707 PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT-----------FPDGDQLLVVKENLVEDAGI 775 (873)
T ss_pred CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc-----------CCCCCeEEEEEehhhhhcce
Confidence 55555567788999999999999999988 9999999998775322211 22345678888999999999
Q ss_pred EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695 225 YTCRAKNGAGEVFTNISLNVIKVET 249 (369)
Q Consensus 225 Y~C~a~n~~g~~~~~~~l~v~~~~~ 249 (369)
|+|...|..|.....+.+.+...+.
T Consensus 776 yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 776 YTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred EEEEEEeeccceeeEEEEEEeecCC
Confidence 9999999999988887777765543
No 4
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=1.1e-15 Score=112.91 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=80.6
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|.|...+.++.+..|+.+.|.|.+.|.|.|.+.|+++++.+... .++.+......+.|.|.++..+|+|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~---------~~~~~~~~~~~s~L~I~~~~~~D~G~Y 71 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG---------EGIKIENTENSSKLTITEGQQEHCGCY 71 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC---------CcEEEEecCCeeEEEECCCChhhCEEE
Confidence 45667788999999999999999999999999999999877531 123333334567899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEEeecCC
Q psy12695 226 TCRAKNGAGEVFTNISLNVIKVET 249 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v~~~~~ 249 (369)
+|.|.|..|...+.+.|.|...|.
T Consensus 72 tc~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 72 TLEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred EEEEEcCCCceeEEEEEEEecCCC
Confidence 999999999999999999988764
No 5
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=8.6e-15 Score=105.89 Aligned_cols=86 Identities=30% Similarity=0.404 Sum_probs=71.7
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++. ...+.|.|.+++.+|+|.|
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---------~~~~----~~~~~L~I~~v~~~D~G~Y 68 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---------AEIS----MSGAVLKIFNIQPEDEGTY 68 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---------CEEe----cCCCEEEECcCChhhCEEE
Confidence 66777788999999999999999999999999999988654321 1111 1245799999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy12695 226 TCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v 244 (369)
.|.|.|..|.....+.|.|
T Consensus 69 ~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 69 ECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEEcCCCceEEEEEEEE
Confidence 9999999999999888876
No 6
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.59 E-value=2.3e-14 Score=104.81 Aligned_cols=89 Identities=28% Similarity=0.487 Sum_probs=74.0
Q ss_pred CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224 (369)
Q Consensus 145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 224 (369)
+|.+...|.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+......+.|.|.+++.+|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~ 73 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS---------SQRHQITSTEYKSTFEISKVQMSDEGN 73 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC---------CCcEEEEEcCCeeEEEECCCCcccCEe
Confidence 46777788999999999999999999999999999999876532 123333333446789999999999999
Q ss_pred EEEEEEeCCceEEEEEEE
Q psy12695 225 YTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 225 Y~C~a~n~~g~~~~~~~l 242 (369)
|.|.|.|..|..+..+.|
T Consensus 74 Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 74 YTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEEcCCCCEeEEEEe
Confidence 999999999998888776
No 7
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.59 E-value=3.3e-14 Score=102.23 Aligned_cols=84 Identities=20% Similarity=0.416 Sum_probs=69.1
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ..++.+......+.|.|.++..+|+|.|.|.|.|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET--------EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC--------CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence 3567899999999999999999999999999876431 11333333344678999999999999999999999
Q ss_pred CceEEEEEEEEE
Q psy12695 233 AGEVFTNISLNV 244 (369)
Q Consensus 233 ~g~~~~~~~l~v 244 (369)
.|...+.+.|.|
T Consensus 75 ~G~~~~~~~l~V 86 (86)
T cd05894 75 VGEDHASLFVKV 86 (86)
T ss_pred CCcEEEEEEEEC
Confidence 999998888765
No 8
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.57 E-value=4.2e-14 Score=103.37 Aligned_cols=86 Identities=28% Similarity=0.482 Sum_probs=69.1
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
..|..+++.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+... .....|.|.+++.+|+|.|+|.
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 76 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS---------DHYNVKVEQGKYASLTIKGVSSEDSGKYGIV 76 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC---------CCEEEEEcCCCEEEEEEccCChhhCEEEEEE
Confidence 3467789999999999999999999999999998776421 12222222 2345799999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy12695 229 AKNGAGEVFTNISLNV 244 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v 244 (369)
|.|..|.....+.|.|
T Consensus 77 a~N~~G~~~~~~~v~v 92 (92)
T cd05737 77 VKNKYGGETVDVTVSV 92 (92)
T ss_pred EEECCCcceEEEEEeC
Confidence 9999999988887764
No 9
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.55 E-value=7.6e-14 Score=101.74 Aligned_cols=90 Identities=37% Similarity=0.642 Sum_probs=76.7
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+........|.|.++..+|+|.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 71 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS---------SQRYQIESDGGSSSLTIKNVTREDAGTY 71 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES---------SSSEEEEEETTEEEEEESSESGGGSEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee---------eeeeeeecccceeEEccCCCChhhCEEE
Confidence 4455667889999999999999999999999999999988764 2234444555788999999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy12695 226 TCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v 244 (369)
.|.+.|..|..++.+.|.|
T Consensus 72 ~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 72 TCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEEEC
Confidence 9999999999999988876
No 10
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.54 E-value=1.3e-13 Score=100.31 Aligned_cols=86 Identities=26% Similarity=0.453 Sum_probs=68.8
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ..........+.|.|.++..+|.|.|.|.|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~---------~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A 75 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTR---------TDTLETTVDIYNLQLSNITSETQTTVTCTA 75 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCc---------cEEEEecCCEEEEEEecCCcccCEEEEEEE
Confidence 44567779999999999999999999999999997654211 111112233568999999999999999999
Q ss_pred EeCCceEEEEEEEEE
Q psy12695 230 KNGAGEVFTNISLNV 244 (369)
Q Consensus 230 ~n~~g~~~~~~~l~v 244 (369)
.|..|...+.+.|.|
T Consensus 76 ~N~~G~~~~~~~L~v 90 (90)
T cd04972 76 ENPVGQANVSVQVTV 90 (90)
T ss_pred ECCCCceeEEEEEeC
Confidence 999999998888764
No 11
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.54 E-value=7.7e-14 Score=103.06 Aligned_cols=95 Identities=27% Similarity=0.528 Sum_probs=70.9
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|.|...+....+..|+.++|.|.+.|.|.|.+.|++++..+...... ...++.+......+.|.|.+++.+|+|.|
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~----~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT----LDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc----cCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 55655555555667899999999999999999999987654321110 11123332233446899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy12695 226 TCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v 244 (369)
.|.|.|..|..++.+.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999888865
No 12
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.54 E-value=8.8e-14 Score=102.96 Aligned_cols=94 Identities=31% Similarity=0.484 Sum_probs=70.0
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG 223 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 223 (369)
|.+. .+.++++.+|+.++|.|.+.|.|.|.+.|+++. ..+.... . ....++.+......+.|.|.+++.+|+|
T Consensus 3 p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~---~-~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 3 PHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD---K-SPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC---c-CcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 4444 357899999999999999999999999999953 2221100 0 0112344433334568999999999999
Q ss_pred EEEEEEEeCCceEEEEEEEEE
Q psy12695 224 IYTCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 224 ~Y~C~a~n~~g~~~~~~~l~v 244 (369)
.|+|.|.|..|.....+.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999888887764
No 13
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=1e-13 Score=96.53 Aligned_cols=74 Identities=28% Similarity=0.410 Sum_probs=58.7
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
+.|.|.+.|.|.|.|.|++++..+... ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~--------~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYN--------TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR 72 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCC--------CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence 468999999999999999998776421 123333222 22347999999999999999999999999999988
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 73 L~V 75 (75)
T cd05892 73 LDV 75 (75)
T ss_pred EeC
Confidence 865
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=7.7e-14 Score=97.54 Aligned_cols=74 Identities=32% Similarity=0.494 Sum_probs=61.1
Q ss_pred cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 238 (369)
+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+ ...+.|.|.+++.+|+|.|.|.|.|..|....
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~---------~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 68 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD---------RRHLV---LSSGTLRISRVALHDQGQYECQAVNIVGSQRT 68 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC---------CCeEE---ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence 6899999999999999999999998765421 11111 13468999999999999999999999999998
Q ss_pred EEEEEE
Q psy12695 239 NISLNV 244 (369)
Q Consensus 239 ~~~l~v 244 (369)
.+.|.|
T Consensus 69 ~~~L~V 74 (74)
T cd05745 69 VAQLTV 74 (74)
T ss_pred EEEEeC
Confidence 888765
No 15
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.51 E-value=1.9e-13 Score=100.95 Aligned_cols=94 Identities=30% Similarity=0.521 Sum_probs=71.1
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ....++.+......+.|.|.+++.+|+|.|
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDK----SLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCc----cccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 4554 45678899999999999999999999999998754332110 011233333333457899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy12695 226 TCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v 244 (369)
.|.|.|..|..+..+.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999988887764
No 16
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.8e-13 Score=99.26 Aligned_cols=85 Identities=32% Similarity=0.434 Sum_probs=69.4
Q ss_pred CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT 226 (369)
Q Consensus 147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 226 (369)
.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .... ...+.|.|.+++.+|+|.|.
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---------~~~~----~~~~~L~i~~v~~~D~G~Y~ 69 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---------AEIS----MSGAVLKIPNIQFEDEGTYE 69 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---------cEEE----EeCCEEEECCCCcccCEEEE
Confidence 3445678888999999999999999999999999987644321 0111 23568999999999999999
Q ss_pred EEEEeCCceEEEEEEEEE
Q psy12695 227 CRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 227 C~a~n~~g~~~~~~~l~v 244 (369)
|.|.|..|.....+.|.|
T Consensus 70 C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 70 CEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEEECCCcEEEEEEEEE
Confidence 999999999998888876
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.51 E-value=1.4e-13 Score=99.02 Aligned_cols=84 Identities=26% Similarity=0.574 Sum_probs=69.5
Q ss_pred ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
+...|.++.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ..+.|.|.++..+|+|.|.|
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---------~~~~~----~~~~L~i~~~~~~D~G~Y~C 68 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---------NRIEV----EAGDLRITKLSLSDSGMYQC 68 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---------CeEEE----eCCEEEEeeCCHHHCEEEEE
Confidence 345678899999999999999999999999999998765321 12211 24579999999999999999
Q ss_pred EEEeCCceEEEEEEEEE
Q psy12695 228 RAKNGAGEVFTNISLNV 244 (369)
Q Consensus 228 ~a~n~~g~~~~~~~l~v 244 (369)
.|.|..|...+++.|.|
T Consensus 69 ~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 69 VAENKHGTIYASAELAV 85 (85)
T ss_pred EEECCCCeEEEEEEEEC
Confidence 99999999998888764
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.50 E-value=2.5e-13 Score=100.43 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=68.3
Q ss_pred CCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcccCCCCCEEEEE
Q psy12695 153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
..+++.+|+.+.|.|.+.| .|+|.+.|+|++..+..... ...... ....+.|.|..+..+|+|.|+|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc 82 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLT--------EIVTSENESEYRYVSELKLVRLKESEAGTYTF 82 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcc--------eeEEEeccCcceEEEEEEEeecCHhhCeeEEE
Confidence 5688999999999999999 99999999999987753211 111110 0124689999999999999999
Q ss_pred EEEeCCceEEEEEEEEEe
Q psy12695 228 RAKNGAGEVFTNISLNVI 245 (369)
Q Consensus 228 ~a~n~~g~~~~~~~l~v~ 245 (369)
.|.|..|..+..+.|.|.
T Consensus 83 ~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 83 LASNSDASKSLTFELYVN 100 (101)
T ss_pred EEECCCccEEEEEEEEEE
Confidence 999999999999988875
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=1.6e-13 Score=95.23 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=60.3
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.+.|.|.+.|.|.|.|.|++++..+... .++.+ ...+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---------~r~~~---~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---------SRISI---WDDGSLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC---------CCEEE---cCCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 788999999999999999999988755321 12222 124679999999999999999999999999998
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.|.|
T Consensus 69 ~~l~~ 73 (73)
T cd05852 69 GVLSV 73 (73)
T ss_pred EEEEC
Confidence 88864
No 20
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=2.2e-13 Score=95.07 Aligned_cols=74 Identities=34% Similarity=0.490 Sum_probs=58.4
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeec-ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN-SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
++|.|.+.|.|.|.|.|++++..+... ..++.+.... +...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN--------TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC--------CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 478999999999999999998776421 1233332221 2236999999999999999999999999999988
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 73 L~V 75 (75)
T cd05893 73 LDV 75 (75)
T ss_pred EeC
Confidence 865
No 21
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.49 E-value=5.7e-13 Score=98.09 Aligned_cols=84 Identities=35% Similarity=0.495 Sum_probs=68.8
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
.+..+..|+.+.|.|.+.|.|.|.+.|++++..+... ..++. .....+.|.|.+++.+|+|.|+|.|.|.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~--------~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG--------EEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC--------CCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 4567899999999999999999999999998765421 11222 2233457999999999999999999999
Q ss_pred CceEEEEEEEEEee
Q psy12695 233 AGEVFTNISLNVIK 246 (369)
Q Consensus 233 ~g~~~~~~~l~v~~ 246 (369)
.|.....+.|.|..
T Consensus 81 ~G~~~~~~~L~V~~ 94 (95)
T cd05730 81 AGEQEAEIHLKVFA 94 (95)
T ss_pred CCeEEEEEEEEEEe
Confidence 99999999998864
No 22
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.48 E-value=5.6e-13 Score=97.67 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=65.7
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCC-CeEEEEe-CCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPV-PKIKWIF-KEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
.|.+..+.+|+.++|.|.+.|.|. |.+.|++ ++..+... ..++.+.. ....+.|.|.+++.+|+|.|+|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~--------~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC 77 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN--------QQRISVVRNDDYSSTLTIYNANIDDAGIYKC 77 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc--------CCeEEEEeCCCCceEEEEeccChhhCEEEEE
Confidence 456778999999999999999995 7999998 45433221 11332221 1224789999999999999999
Q ss_pred EEEeCC-ceEEEEEEEEE
Q psy12695 228 RAKNGA-GEVFTNISLNV 244 (369)
Q Consensus 228 ~a~n~~-g~~~~~~~l~v 244 (369)
.|+|.. |..++++.|.|
T Consensus 78 ~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 78 VVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEcCCCCcEEEEEEEEE
Confidence 999997 88888888876
No 23
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=7.2e-13 Score=95.76 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=65.0
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
|+.+.|.|.+.|.|++.+.|++++..+... ..++.+.. ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~--------~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~ 72 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE--------MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE 72 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCC--------CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence 789999999999999999999988755321 11222221 112368999999999999999999999999
Q ss_pred EEEEEEEEEeecC
Q psy12695 236 VFTNISLNVIKVE 248 (369)
Q Consensus 236 ~~~~~~l~v~~~~ 248 (369)
..+.+.|.|..+|
T Consensus 73 ~~~~~~L~V~~~P 85 (88)
T cd05735 73 DRGIIQLTVQEPP 85 (88)
T ss_pred ceEEEEEEEeCCC
Confidence 9999999998765
No 24
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.48 E-value=6.9e-13 Score=96.78 Aligned_cols=86 Identities=29% Similarity=0.476 Sum_probs=68.7
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
..|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++..... ...+.|.|.+++.+|+|.|+|.
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~---------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 76 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS---------EHYSVKLEQGKYASLTIKGVTSEDSGKYSIN 76 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC---------CCEEEEEcCCCEEEEEECCCChhhCEEEEEE
Confidence 3467889999999999999999999999999998765421 12222211 1235799999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy12695 229 AKNGAGEVFTNISLNV 244 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v 244 (369)
|.|..|.....+.|.|
T Consensus 77 a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 77 VKNKYGGETVDVTVSV 92 (92)
T ss_pred EEeCCCceeeEEEEEC
Confidence 9999999998888764
No 25
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=4.9e-13 Score=93.95 Aligned_cols=75 Identities=28% Similarity=0.574 Sum_probs=61.1
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.+.|.|.+.|.|.|.+.|++++..+..... ..++.. ..+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~------~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDP------DPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLAN 70 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCC------CceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence 78999999999999999999999876643211 112211 24679999999999999999999999999999
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd05867 71 AHVHV 75 (76)
T ss_pred EEEEE
Confidence 88877
No 26
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=2.9e-13 Score=91.75 Aligned_cols=66 Identities=32% Similarity=0.461 Sum_probs=56.0
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
++|.|.+.|.|.|.+.|+|++..+... ...+.|.|.++..+|+|.|+|.|+|..|..++++.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 63 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL 63 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence 468999999999999999999876410 124689999999999999999999999988887777
Q ss_pred EEe
Q psy12695 243 NVI 245 (369)
Q Consensus 243 ~v~ 245 (369)
.+.
T Consensus 64 ~l~ 66 (67)
T cd05863 64 ELI 66 (67)
T ss_pred EEE
Confidence 664
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=4.3e-13 Score=94.13 Aligned_cols=76 Identities=29% Similarity=0.473 Sum_probs=61.2
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.++|.|.+.|.|.|.|.|++++..+...+.. .... ...+.|.|.+++.+|+|.|.|.|.|..|...+.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~------~~~~----~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTD------PSRK----VDGDTIIFSKVQERSSAVYQCNASNEYGYLLAN 70 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCC------ceEE----ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence 788999999999999999999998776422110 0111 123578999999999999999999999999999
Q ss_pred EEEEEe
Q psy12695 240 ISLNVI 245 (369)
Q Consensus 240 ~~l~v~ 245 (369)
+.|.|.
T Consensus 71 ~~l~v~ 76 (76)
T cd05868 71 AFVNVL 76 (76)
T ss_pred EEEEeC
Confidence 998873
No 28
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.47 E-value=9.9e-13 Score=94.67 Aligned_cols=82 Identities=28% Similarity=0.468 Sum_probs=65.0
Q ss_pred eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ..+ ........|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~------~~~--~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRI------GGY--KVRNQHWSLIMESVVPSDKGNYTCVVENEYG 75 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCce------eee--EEeCCceEEEEccCCcccCEEEEEEEEeCCC
Confidence 56789999999999999999999999998876432110 011 1122345799999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy12695 235 EVFTNISLNV 244 (369)
Q Consensus 235 ~~~~~~~l~v 244 (369)
.....+.|.|
T Consensus 76 ~~~~~~~l~v 85 (85)
T cd05857 76 SINHTYHLDV 85 (85)
T ss_pred EEEEEEEEEC
Confidence 9999888865
No 29
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=1.2e-12 Score=93.96 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=63.4
Q ss_pred CeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceE-EEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 161 ENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY-IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 161 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
++++|.|.+.|.|.| .+.|++++..+..... ..++ ........+.|.|.+++..|+|.|+|.|.|..|..+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~ 74 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP------NGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCC------CCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence 468999999999988 4799999877643221 1111 112223457899999999999999999999999999
Q ss_pred EEEEEEEeecC
Q psy12695 238 TNISLNVIKVE 248 (369)
Q Consensus 238 ~~~~l~v~~~~ 248 (369)
+.+.|.|..+|
T Consensus 75 ~~~~L~V~~~P 85 (85)
T cd05854 75 ASATLVVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 99999998653
No 30
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.47 E-value=7.7e-13 Score=92.48 Aligned_cols=74 Identities=34% Similarity=0.449 Sum_probs=60.5
Q ss_pred eEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 162 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
.+.|.|.+.|.|.|.+.|++++..+.. ..++.+......+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKL---------SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCC---------CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence 368999999999999999999987632 12333333445678999999999999999999999999998888
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 72 l~V 74 (74)
T cd05748 72 VKV 74 (74)
T ss_pred EEC
Confidence 765
No 31
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.45 E-value=9.3e-13 Score=93.03 Aligned_cols=76 Identities=34% Similarity=0.507 Sum_probs=60.6
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+++.|.|.+.|.|.|.+.|++++..+.. ..++.+......+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPD---------SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCC---------CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 78999999999999999999998866532 123333333445789999999999999999999999998777
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.+.+
T Consensus 72 ~~~~~ 76 (78)
T cd05743 72 PDGIL 76 (78)
T ss_pred ccEEE
Confidence 65544
No 32
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.45 E-value=1e-12 Score=91.94 Aligned_cols=74 Identities=30% Similarity=0.405 Sum_probs=58.1
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
++|.|.+.|.|.|.+.|++++..+... ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 72 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN--------TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR 72 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC--------CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence 478999999999999999998776421 112332221 23347999999999999999999999999999888
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 73 l~v 75 (75)
T cd05744 73 LDV 75 (75)
T ss_pred EeC
Confidence 764
No 33
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=1.2e-12 Score=92.00 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=61.8
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.++|.|.+.|.|.|.|.|++++..+...... .......+.|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~----------~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD----------PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLAN 70 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc----------ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence 789999999999999999999998766532211 0112235689999999999999999999999999999
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd04978 71 AFVHV 75 (76)
T ss_pred EEEEE
Confidence 98877
No 34
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=1.5e-12 Score=94.51 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=64.6
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
..+.+..+.+|+.+.|.|.+.|.|. .+.|+++++..... ..++.+........|.|.++..+|+|.|+|.|
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--------~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A 75 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--------SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 75 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--------CCCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence 3457788999999999999999998 89999864432211 12333333333468999999999999999999
Q ss_pred EeCCceE-EEEEEEEE
Q psy12695 230 KNGAGEV-FTNISLNV 244 (369)
Q Consensus 230 ~n~~g~~-~~~~~l~v 244 (369)
+|..|.. .+++.|.+
T Consensus 76 ~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 76 TDAKGQTQEATVVLEI 91 (92)
T ss_pred EcCCCcEEEEEEEEEE
Confidence 9999985 55566554
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.43 E-value=1.5e-12 Score=96.45 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=68.3
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
...++..|+.+.|.|.+.|.|.|.+.|++++..+........... .........+.|.|.+++.+|+|.|+|.|.|.
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~---~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSE---HNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEecc---ccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 367788999999999999999999999999988753221100000 00001112468999999999999999999999
Q ss_pred CceEEEEEEEEEe
Q psy12695 233 AGEVFTNISLNVI 245 (369)
Q Consensus 233 ~g~~~~~~~l~v~ 245 (369)
.|..+.++.|.|.
T Consensus 88 ~g~~~~t~~l~V~ 100 (101)
T cd05859 88 DAVKSYTFALQIQ 100 (101)
T ss_pred CceEEEEEEEEEE
Confidence 9999998888875
No 36
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.42 E-value=1.4e-12 Score=90.32 Aligned_cols=71 Identities=30% Similarity=0.626 Sum_probs=57.0
Q ss_pred eEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 162 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
++.|.|.+.|.|.|.+.|++++..+... .++.+. ..+.|.|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~---------~~~~~~---~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 68 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS---------DYFKIV---KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQ 68 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC---------CCEEEE---ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEE
Confidence 3789999999999999999998765421 122211 2356889999999999999999999999999888
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 69 L~V 71 (71)
T cd05723 69 LII 71 (71)
T ss_pred EEC
Confidence 864
No 37
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.42 E-value=1.7e-12 Score=94.26 Aligned_cols=81 Identities=31% Similarity=0.472 Sum_probs=64.5
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
.+.++.+.+|+.++|.|.+.|. .|.+.|++++..+.. .+. ......+.|.|.+++.+|+|.|.|.|.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~----------~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP----------PRL--QLSNDNRTLTFNNVTRSDTGHYQCEAS 75 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC----------CCE--EEeCCCCEEEECcCChhhCEEEEEEEE
Confidence 3467899999999999999999 999999999876532 111 122345689999999999999999999
Q ss_pred eCCceE-EEEEEEEE
Q psy12695 231 NGAGEV-FTNISLNV 244 (369)
Q Consensus 231 n~~g~~-~~~~~l~v 244 (369)
|..|.. +..+.|.|
T Consensus 76 N~~G~~~S~~~~L~V 90 (91)
T cd05740 76 NEVSNMTSDPYILNV 90 (91)
T ss_pred cCCCCEEeeeEEEEe
Confidence 999984 44666765
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.7e-12 Score=90.39 Aligned_cols=73 Identities=33% Similarity=0.518 Sum_probs=60.0
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.+.|.|.+.|.|.|.+.|++++..+... .++.+ ...+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~---------~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 68 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS---------SRICI---WPDGSLEILNVTKSDEGKYTCFAENFFGKANST 68 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC---------CCEEE---CCCCeEEEccCChhHCEEEEEEEECCCCceEEE
Confidence 788999999999999999999998765421 11211 123579999999999999999999999999998
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.|.|
T Consensus 69 ~~l~V 73 (73)
T cd04969 69 GSLSV 73 (73)
T ss_pred EEEEC
Confidence 88865
No 39
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.41 E-value=7e-13 Score=96.40 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=57.7
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCe----EeeecccccccCCcceEEEE-------eecceeeEEEcccCCCCCEEEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEK----IIANISSGLANMNKRQYIIK-------TINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
|+.++|.|.+.|.|.|.|.|++++. .+.. . +....... .......|.|.+++.+|+|.|+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 73 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP--D-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCL 73 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCC--C-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEE
Confidence 6889999999999999999999641 1110 0 00000000 012235799999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy12695 229 AKNGAGEVFTNISLNV 244 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v 244 (369)
|.|..|...+++.|.|
T Consensus 74 A~N~~G~~~~sa~L~V 89 (90)
T cd04974 74 AGNSIGPSHHSAWLTV 89 (90)
T ss_pred eecccCcccCCEEEEe
Confidence 9999999999998887
No 40
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.41 E-value=2.9e-12 Score=93.22 Aligned_cols=85 Identities=32% Similarity=0.477 Sum_probs=64.6
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.++|.|.+.|.|.|.+.|++++.......... .....++.+. ..+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~-~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQP-PQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccC-CCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence 7899999999999999999999876432111100 0112234331 24579999999999999999999999999999
Q ss_pred EEEEEeecC
Q psy12695 240 ISLNVIKVE 248 (369)
Q Consensus 240 ~~l~v~~~~ 248 (369)
+.|.|....
T Consensus 77 ~~l~V~~~~ 85 (90)
T cd05726 77 AYLEVTDVI 85 (90)
T ss_pred EEEEEeecc
Confidence 999998654
No 41
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.40 E-value=4.9e-12 Score=93.59 Aligned_cols=90 Identities=32% Similarity=0.416 Sum_probs=68.4
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEee----cceeeEEEcccCCC
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTI----NSLSNLTIVAVTMS 220 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~ 220 (369)
|+++..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+..... .++.+... ...+.|.|.+++.+
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-------~r~~i~~~~~~~~~~s~L~I~~v~~~ 74 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-------GRYTVETDPSPGGVLSTLTISNTQES 74 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-------CCEEEEEecCCCceEEEEEECCcccc
Confidence 445555677889999999999999999999 5999999876653221 12322221 12358999999985
Q ss_pred C-CEEEEEEEEeCCceEEEEEEE
Q psy12695 221 D-SGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 221 D-~G~Y~C~a~n~~g~~~~~~~l 242 (369)
| .|.|.|.|.|..|.....+.|
T Consensus 75 d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 75 DFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred ccceeEEEEEEcCCCcccEEEEe
Confidence 5 899999999999998887765
No 42
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.39 E-value=2e-12 Score=89.50 Aligned_cols=70 Identities=29% Similarity=0.512 Sum_probs=56.7
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+... +. ......+.|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~----------~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN----------RT--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC----------ce--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 468999999999999999988654321 00 112245689999999999999999999999999988888
Q ss_pred EE
Q psy12695 243 NV 244 (369)
Q Consensus 243 ~v 244 (369)
.|
T Consensus 69 ~V 70 (71)
T cd05876 69 TV 70 (71)
T ss_pred EE
Confidence 76
No 43
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.7e-12 Score=89.98 Aligned_cols=74 Identities=32% Similarity=0.587 Sum_probs=56.8
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
++|.|.+.|.|.|.+.|++++....... ...++.+ ....+.|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~------~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAA------RERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcc------cccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 3689999999999999999875422111 1112222 2234579999999999999999999999999999888
Q ss_pred EE
Q psy12695 243 NV 244 (369)
Q Consensus 243 ~v 244 (369)
.|
T Consensus 73 ~V 74 (75)
T cd05763 73 TV 74 (75)
T ss_pred EE
Confidence 87
No 44
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.39 E-value=6e-12 Score=93.53 Aligned_cols=95 Identities=32% Similarity=0.524 Sum_probs=66.2
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEE--cccCCCCCE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI--VAVTMSDSG 223 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I--~~v~~~D~G 223 (369)
|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ...+...........+.+ ..+..+|+|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD----PRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC----CCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 66777788999999999999999999999999999998766431100 001111111111112222 234689999
Q ss_pred EEEEEEEeCCce-EEEEEEEEE
Q psy12695 224 IYTCRAKNGAGE-VFTNISLNV 244 (369)
Q Consensus 224 ~Y~C~a~n~~g~-~~~~~~l~v 244 (369)
.|+|.|.|..|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999999 667777765
No 45
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=7e-12 Score=90.15 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=62.4
Q ss_pred CeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceE-EEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 161 ENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY-IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 161 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
+.+.|.|.+.|.|.| .+.|++++..+...... .++ ........+.|.|.+++..|+|.|+|.|.|..|..+
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDG------GHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCC------ccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 468899999999988 56899998776432110 011 111122457899999999999999999999999999
Q ss_pred EEEEEEEeecC
Q psy12695 238 TNISLNVIKVE 248 (369)
Q Consensus 238 ~~~~l~v~~~~ 248 (369)
+.+.|.|..+|
T Consensus 75 ~~~~l~V~~pP 85 (85)
T cd04970 75 ASADLIVRGPP 85 (85)
T ss_pred EEEEEEEECCC
Confidence 99999998754
No 46
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.38 E-value=2.8e-12 Score=91.61 Aligned_cols=79 Identities=29% Similarity=0.551 Sum_probs=62.8
Q ss_pred eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
+.+..|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-----------~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 72 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-----------ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG 72 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-----------eecCceEEEEEccCChhhCEEEEEEEEcCCc
Confidence 45678999999999999999999999988765321110 1112346899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy12695 235 EVFTNISLNV 244 (369)
Q Consensus 235 ~~~~~~~l~v 244 (369)
.....+.|.|
T Consensus 73 ~~~~~~~v~v 82 (82)
T cd05856 73 EINATYKVDV 82 (82)
T ss_pred cEEEEEEEeC
Confidence 9888877754
No 47
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.37 E-value=1.2e-11 Score=93.20 Aligned_cols=96 Identities=25% Similarity=0.358 Sum_probs=69.8
Q ss_pred CCCccCCCCCee-e---ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcc
Q psy12695 145 SPNIRPITPDVT-A---EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVA 216 (369)
Q Consensus 145 ~p~i~~~~~~~~-~---~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~ 216 (369)
.|.|...+.... + ..|..++|.|.+.|.|.|.+.|++++..+..... ++.... ....+.|.|.+
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~--------r~~~~~~~~~~~~~s~L~I~~ 75 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP--------RYEETTEHTGTVHTSILTIIN 75 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCC--------eEEEEeeccCccceeEEEECc
Confidence 455555544222 2 3568999999999999999999999876642111 121111 11246899999
Q ss_pred cC-CCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695 217 VT-MSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248 (369)
Q Consensus 217 v~-~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 248 (369)
+. .+|.|.|+|.|.|..|.....+.|.|...|
T Consensus 76 v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 76 VSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 97 699999999999999999999999988664
No 48
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=2.4e-12 Score=88.29 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=55.0
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+.... ++ .....|.|.++..+|+|.|+|.|.|..|......++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~---------~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~ 66 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH---------TF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF 66 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC---------EE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence 3689999999999999999998764311 11 123579999999999999999999999987776666
Q ss_pred EEe
Q psy12695 243 NVI 245 (369)
Q Consensus 243 ~v~ 245 (369)
.+.
T Consensus 67 ~l~ 69 (70)
T cd05864 67 QLV 69 (70)
T ss_pred EEE
Confidence 553
No 49
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.37 E-value=3.3e-12 Score=92.91 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=57.6
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCC----eEeeecccccccC-CcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKE----KIIANISSGLANM-NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
|+.++|.|.+.|.|.|.|.|++.+ ..+.......... ..... .......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGV-NTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCc-eecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 788999999999999999999853 2221100000000 00000 00011236899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy12695 235 EVFTNISLNV 244 (369)
Q Consensus 235 ~~~~~~~l~v 244 (369)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999888877
No 50
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.36 E-value=6.5e-12 Score=86.14 Aligned_cols=68 Identities=24% Similarity=0.455 Sum_probs=53.6
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.++|.|.+.|.|.|.|.|++++..+.... ++. .....|.|.++ .|+|.|+|.|.|..|...+.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~---------~~~----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~ 65 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED---------EMP----VGRNVLELTNI--YESANYTCVAISSLGMIEAT 65 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcc---------cee----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence 6889999999999999999999987653211 111 12346888887 47999999999999998887
Q ss_pred EEE
Q psy12695 240 ISL 242 (369)
Q Consensus 240 ~~l 242 (369)
+.|
T Consensus 66 a~l 68 (69)
T cd05739 66 AQV 68 (69)
T ss_pred EEE
Confidence 765
No 51
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.36 E-value=5.1e-12 Score=92.53 Aligned_cols=81 Identities=31% Similarity=0.551 Sum_probs=60.6
Q ss_pred CCccCCCCCeeec---cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695 146 PNIRPITPDVTAE---ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD 221 (369)
Q Consensus 146 p~i~~~~~~~~~~---~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D 221 (369)
|.+...|.++.+. +|+.++|.|.+.|.|.|.|.|++++..+.... ..++.. ..+.|.|.++. .+|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~-------~~~~~~----~~g~L~i~~~~~~~D 70 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES-------DYRYSL----IDGNLIISNPSEVKD 70 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC-------CceEEe----eCCeEEEccCCccCc
Confidence 4555566666553 57899999999999999999999987664211 112211 23578998875 699
Q ss_pred CEEEEEEEEeCCceEE
Q psy12695 222 SGIYTCRAKNGAGEVF 237 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~~~ 237 (369)
+|.|.|.|.|..|...
T Consensus 71 ~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 71 SGRYQCLATNSIGSIL 86 (94)
T ss_pred CEEEEEEEEcCCCeEE
Confidence 9999999999999864
No 52
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.36 E-value=5.8e-12 Score=88.63 Aligned_cols=73 Identities=32% Similarity=0.584 Sum_probs=55.5
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE--EEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF--TNI 240 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~ 240 (369)
++|.|.+.|.|.|.+.|++++..+.... .++.+ ....+.|.|.+++.+|+|.|.|.|.|..|... +.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~--------~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ--------GNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCC--------ccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence 4799999999999999999987653211 12222 22346899999999999999999999999864 455
Q ss_pred EEEEe
Q psy12695 241 SLNVI 245 (369)
Q Consensus 241 ~l~v~ 245 (369)
+|.|.
T Consensus 71 ~l~v~ 75 (77)
T cd05760 71 TLSII 75 (77)
T ss_pred EEEEe
Confidence 56553
No 53
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.36 E-value=4.8e-12 Score=87.47 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=56.9
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+... .++ ....+.|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---------~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 67 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK---------NRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF 67 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---------CEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence 468999999999999999998776431 111 1234689999999999999999999999998888777
Q ss_pred EEe
Q psy12695 243 NVI 245 (369)
Q Consensus 243 ~v~ 245 (369)
.+.
T Consensus 68 ~~~ 70 (71)
T cd04976 68 TLV 70 (71)
T ss_pred EEE
Confidence 664
No 54
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.36 E-value=6.2e-12 Score=89.32 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=63.1
Q ss_pred CeEEEEEEeeC--CCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 161 ENVTLSCRATG--SPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 161 ~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
+++.|.|.+.+ .+.+.+.|++++..+..... ..+|... .....+.|.|.+++..|+|.|+|.|.|..+...
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~------~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~ 74 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKD------GDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS 74 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCC------CccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence 46889999977 44778999999988752111 1123221 112356899999999999999999999999999
Q ss_pred EEEEEEEeecC
Q psy12695 238 TNISLNVIKVE 248 (369)
Q Consensus 238 ~~~~l~v~~~~ 248 (369)
+++.|.|..+|
T Consensus 75 a~a~L~V~~pP 85 (85)
T cd05853 75 AAADLIVRGPP 85 (85)
T ss_pred EEEEEEEecCC
Confidence 99999998764
No 55
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.36 E-value=1.1e-11 Score=90.52 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
..++++.+|+++.|.|.+.|.|.|.+.|+++++.+........ ....++.+. .......|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRA-LRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEE-EeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 4688999999999999999999999999998865422111110 111233322 22235789999999999999999997
Q ss_pred eCCceEEEEEEEE
Q psy12695 231 NGAGEVFTNISLN 243 (369)
Q Consensus 231 n~~g~~~~~~~l~ 243 (369)
.. -...+.+.|.
T Consensus 83 t~-~~~~~~~~~~ 94 (95)
T cd05882 83 TM-PVRTAKATVT 94 (95)
T ss_pred ee-ccccEEEEEE
Confidence 72 2334444443
No 56
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.35 E-value=4.7e-12 Score=87.15 Aligned_cols=69 Identities=33% Similarity=0.560 Sum_probs=55.4
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
++|.|.+.|.|.|.+.|+++++.+.. .++... ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~----------~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK----------GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC----------CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 46899999999999999998764421 122221 34579999999999999999999999999888887
Q ss_pred EE
Q psy12695 243 NV 244 (369)
Q Consensus 243 ~v 244 (369)
.|
T Consensus 68 ~V 69 (69)
T cd05725 68 TV 69 (69)
T ss_pred EC
Confidence 64
No 57
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.35 E-value=4.6e-12 Score=89.64 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=62.7
Q ss_pred CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
|....+.+|+.+.|.|.+.|. .+.+.|++++..+... .++.+ ....|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---------~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~n 66 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---------NRTRI----TGEEVQIKDAVPRDSGLYACVTSS 66 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---------ceEEE----eCCEEEECCCChhhCEEEEEEEeC
Confidence 456788999999999999986 5689999998766421 12222 134799999999999999999999
Q ss_pred CCceEEEEEEEEE
Q psy12695 232 GAGEVFTNISLNV 244 (369)
Q Consensus 232 ~~g~~~~~~~l~v 244 (369)
..|.....+.|+|
T Consensus 67 ~~g~~~~~~~v~V 79 (79)
T cd04973 67 PSGSDTTYFSVNV 79 (79)
T ss_pred CCCcccEEEEEeC
Confidence 9998877777654
No 58
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.35 E-value=4.3e-12 Score=87.30 Aligned_cols=68 Identities=29% Similarity=0.535 Sum_probs=54.8
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+... .++.+ ...+.|.|.+++.+|+|.|.|.|.|..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---------~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES---------GKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC---------CCEEE---CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 468999999999999999988765421 12221 124689999999999999999999999998887766
No 59
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.35 E-value=9.8e-12 Score=87.86 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=59.6
Q ss_pred cCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 149 RPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
...|+++.+.+|+.+.|.|.+.|.|.| .|.|++++..+.. . .....+.|.|..+ .|+|.|.|
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-~--------------~~~~~s~L~i~~~--~d~g~Y~C 64 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-P--------------PAPSPSVLNVPGL--NETSKFSC 64 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-C--------------CCCCCCEEEEccc--cCCeEEEE
Confidence 345778999999999999999999999 7999999976642 0 0012357888877 47899999
Q ss_pred EEEeCCceEEE-EEEE
Q psy12695 228 RAKNGAGEVFT-NISL 242 (369)
Q Consensus 228 ~a~n~~g~~~~-~~~l 242 (369)
.|+|..|.... .++|
T Consensus 65 ~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 65 EAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEeccCcEEeeeEEe
Confidence 99999997543 4443
No 60
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=1e-11 Score=90.99 Aligned_cols=86 Identities=30% Similarity=0.491 Sum_probs=62.5
Q ss_pred CCccCCCCCeeeccC---CeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695 146 PNIRPITPDVTAEEN---ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD 221 (369)
Q Consensus 146 p~i~~~~~~~~~~~G---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D 221 (369)
|.+...|.++.+.+| +.++|.|.+.|.|.|.++|++++..+..... .++.. ..+.|.|.++. ..|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-------~~~~~----~~g~L~I~~~~~~~D 70 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-------SRYTL----VAGNLVINNPQKARD 70 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-------ceEEE----ECCeEEEccCCccCc
Confidence 445556677766555 6899999999999999999999977642111 12222 14578998865 699
Q ss_pred CEEEEEEEEeCCceEEE-EEEE
Q psy12695 222 SGIYTCRAKNGAGEVFT-NISL 242 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~~~~-~~~l 242 (369)
+|.|.|.|+|..|.... .+.|
T Consensus 71 ~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 71 AGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CEEEEEEEEcCcCcEEEEEEEE
Confidence 99999999999998643 4544
No 61
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.34 E-value=1.2e-11 Score=90.24 Aligned_cols=86 Identities=21% Similarity=0.445 Sum_probs=62.1
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
..|.+..+..|+.+.|.|.+.|.| +.+.|++++ ..+.. .............+.|.|.+++.+|+|.|+|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 75 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT--------QQQISVVQNDDVRSTLTIYNANIEDAGIYKCV 75 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc--------CCCEEEEeCCCCEEEEEEecCCcccCEEEEEE
Confidence 346778899999999999999997 499999844 33321 01112222223456899999999999999999
Q ss_pred EEeCCce-EEEEEEEEE
Q psy12695 229 AKNGAGE-VFTNISLNV 244 (369)
Q Consensus 229 a~n~~g~-~~~~~~l~v 244 (369)
|.|..|. ..+++.|.|
T Consensus 76 A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 76 ATDAKGTESEATVNLKI 92 (92)
T ss_pred EEcCCCCcceeEEEEEC
Confidence 9999654 566666643
No 62
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.34 E-value=1.3e-11 Score=88.98 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=63.5
Q ss_pred CCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
.|.++.+.+|+++.|.|.+ .|.|.|.+.|++++..+... ..++... ..+.|.|.+++.+|+|.|.|.|
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~--------~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a 70 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD--------NERVRIV---DDGNLLIAEARKSDEGTYKCVA 70 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC--------CCCEEEc---cCCEEEEeECCcccCEEEEEEE
Confidence 3567889999999999998 79999999999998765431 1122111 2468999999999999999999
Q ss_pred EeCCceE-EEEEEEE
Q psy12695 230 KNGAGEV-FTNISLN 243 (369)
Q Consensus 230 ~n~~g~~-~~~~~l~ 243 (369)
.|..|.. +..+.|.
T Consensus 71 ~N~~G~~~s~~~~l~ 85 (86)
T cd05724 71 TNMVGERESAAARLS 85 (86)
T ss_pred EeccCceeeeeEEEE
Confidence 9999985 4445544
No 63
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.33 E-value=1.3e-11 Score=90.12 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=61.2
Q ss_pred CCccCCCCCeeecc---CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695 146 PNIRPITPDVTAEE---NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD 221 (369)
Q Consensus 146 p~i~~~~~~~~~~~---G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D 221 (369)
|.+...|.++.+.+ |..+.|.|.+.|.|.|.++|++++..+... ..++.+ ..+.|.|.++. .+|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--------~~~~~~----~~g~L~I~~~~~~~D 69 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--------NDRYSM----VGGNLVINNPDKYKD 69 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--------CCeEEE----ECCEEEECcCCcCCC
Confidence 34444555555544 448999999999999999999998765321 112222 24689999985 699
Q ss_pred CEEEEEEEEeCCceEEE-EEEE
Q psy12695 222 SGIYTCRAKNGAGEVFT-NISL 242 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~~~~-~~~l 242 (369)
+|.|.|.|.|..|.... .++|
T Consensus 70 ~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 70 AGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CEEEEEEEEeCcceEEEccEEE
Confidence 99999999999998643 4444
No 64
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.33 E-value=2.2e-11 Score=89.19 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
.++++.+.+|+++.|.|.+.+.|.+.+.|++.++......... .....++.+. .......|.|.+++.+|+|.|.|.+
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKK-ALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcc-cccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 3578899999999999999999999999997654332211111 1122344432 2234578999999999999999999
Q ss_pred EeCCceEEEEEEEEE
Q psy12695 230 KNGAGEVFTNISLNV 244 (369)
Q Consensus 230 ~n~~g~~~~~~~l~v 244 (369)
.+..+ ....+.|.|
T Consensus 82 ~t~~~-~~~~~~l~v 95 (95)
T cd07701 82 FTMPV-KTSKAYLTV 95 (95)
T ss_pred EeecC-ccEEEEEEC
Confidence 87533 355555543
No 65
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.33 E-value=1.1e-11 Score=86.81 Aligned_cols=75 Identities=25% Similarity=0.374 Sum_probs=55.4
Q ss_pred EEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy12695 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243 (369)
Q Consensus 165 l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 243 (369)
+.|.+.|.|.|.|+|++++..+........ ...........+.|.|.++..+|+|.|+|.|+|..|...+++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICT----KIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceee----eeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 689999999999999999987753211000 000011112346899999999999999999999999988887764
No 66
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.33 E-value=7.2e-12 Score=86.78 Aligned_cols=70 Identities=34% Similarity=0.487 Sum_probs=56.1
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+... +. ........|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----------~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD----------RT--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC----------ce--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 468999999999999999988654311 00 111234589999999999999999999999999988888
Q ss_pred EE
Q psy12695 243 NV 244 (369)
Q Consensus 243 ~v 244 (369)
.|
T Consensus 69 ~V 70 (71)
T cd05731 69 TV 70 (71)
T ss_pred EE
Confidence 76
No 67
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.5e-11 Score=85.95 Aligned_cols=74 Identities=32% Similarity=0.629 Sum_probs=57.4
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
|+.+.|.|.+.|.|.|.+.|+++++...... .++.. ...+.|.|.++..+|+|.|.|.|.|..|..+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~--------~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS--------SRTLV---YDNGTLDILITTVKDTGSFTCIASNAAGEATAT 69 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC--------CeEEE---ecCCEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence 7899999999999999999998544332111 11111 124579999999999999999999999999888
Q ss_pred EEEEE
Q psy12695 240 ISLNV 244 (369)
Q Consensus 240 ~~l~v 244 (369)
+.|.|
T Consensus 70 ~~l~v 74 (74)
T cd05764 70 VELHI 74 (74)
T ss_pred EEEEC
Confidence 88764
No 68
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.32 E-value=1.9e-11 Score=86.59 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=55.8
Q ss_pred EEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE---eecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy12695 164 TLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK---TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240 (369)
Q Consensus 164 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 240 (369)
.+.|.+.|.|.|.|+|++++..+....... ..+... .....+.|.|.+++.+|+|.|+|.|.|..|...+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 76 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIR-----TEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI 76 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCcee-----EEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence 368999999999999999998775322100 000000 112356799999999999999999999999998887
Q ss_pred EEE
Q psy12695 241 SLN 243 (369)
Q Consensus 241 ~l~ 243 (369)
.+.
T Consensus 77 ~~~ 79 (81)
T cd04971 77 SAH 79 (81)
T ss_pred Eee
Confidence 765
No 69
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.32 E-value=2.8e-11 Score=88.30 Aligned_cols=90 Identities=29% Similarity=0.439 Sum_probs=70.0
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEee----cceeeEEEcccCCC
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTI----NSLSNLTIVAVTMS 220 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~ 220 (369)
|+++.....+.+.+|+.++|.|.+.+.|+|. |.|.+.+..+.+.+. .++.+... ...+.|.|.++...
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~-------~r~~I~~~~~~~g~~S~L~I~~~~~~ 74 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTS-------ERYTVERTSTGSGVLSTLTINNIMEA 74 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCC-------CCEEEEEEccCCCcEEEEEECCCccc
Confidence 5555677888899999999999998888875 899988775543221 24444332 35678999999887
Q ss_pred C-CEEEEEEEEeCCceEEEEEEE
Q psy12695 221 D-SGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 221 D-~G~Y~C~a~n~~g~~~~~~~l 242 (369)
| .|.|.|.|.|.+|.....++|
T Consensus 75 d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 75 DFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred cCCcEEEEEEEeCCccceEEEEe
Confidence 7 789999999999999888776
No 70
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.31 E-value=1.4e-11 Score=87.71 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=57.7
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCe--E-eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEK--I-IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 236 (369)
|+.+.|.|.+.|.|.|.+.|++++. . ...... . ...++. ....+.|.|.+++.+|+|.|.|.|.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~---~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 73 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN-H---VRGNVV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLL 73 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCC-c---ccCCEE---EccccEEEEccCCcccCEEEEEEEecCCceE
Confidence 7899999999999999999999742 1 110000 0 001111 1234689999999999999999999999999
Q ss_pred EEEEEEEE
Q psy12695 237 FTNISLNV 244 (369)
Q Consensus 237 ~~~~~l~v 244 (369)
...+.|.|
T Consensus 74 ~~~~~l~v 81 (81)
T cd05765 74 RANFPLSV 81 (81)
T ss_pred EEEEEEeC
Confidence 99888865
No 71
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=1.9e-11 Score=89.92 Aligned_cols=85 Identities=29% Similarity=0.484 Sum_probs=62.9
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc-----CCCCCEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV-----TMSDSGI 224 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-----~~~D~G~ 224 (369)
..|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...... ++.. ...+.+.|.++ ...|+|.
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~-------~~~~---~~~~~l~i~~v~~~~~~~~D~G~ 73 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE-------RRQQ---LPNGSLLITSVVHSKHNKPDEGF 73 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCc-------ceEE---ccCCeEEEeeeeccCCCCCcCEE
Confidence 4567788899999999999999999999999998776532211 1111 12345666665 6899999
Q ss_pred EEEEEEeC-CceE-EEEEEEEE
Q psy12695 225 YTCRAKNG-AGEV-FTNISLNV 244 (369)
Q Consensus 225 Y~C~a~n~-~g~~-~~~~~l~v 244 (369)
|.|.|.|. .|.. +..+.|.|
T Consensus 74 Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 74 YQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEEEECCccCcEEEeeeEEeC
Confidence 99999999 9886 55666654
No 72
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.30 E-value=1.5e-11 Score=85.78 Aligned_cols=72 Identities=31% Similarity=0.425 Sum_probs=55.1
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 241 (369)
++|.|.+.|.|.|.|.|++++..+..... .++.. ...+.|.|.+++.+|+|.|.|.|.|..|.. +..+.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~-------~~~~~---~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~ 70 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSN-------GRIKQ---LRSGALQIENSEESDQGKYECVATNSAGTRYSAPAN 70 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCC-------CCEEE---cCCcEEEECCCChhhCEEEEEEEECCCCceEcccEE
Confidence 46899999999999999999876542111 12222 234579999999999999999999999984 56666
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 71 l~v 73 (74)
T cd05738 71 LYV 73 (74)
T ss_pred EEE
Confidence 665
No 73
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.29 E-value=2.7e-11 Score=85.09 Aligned_cols=74 Identities=38% Similarity=0.530 Sum_probs=58.7
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
+.|.|.+.|.|.|.+.|++++..+..... .++.. ......|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~-------~~~~~--~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLS-------KQLTL--IANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCC-------ccEEE--eCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 36899999999999999999876643211 12221 2234579999999999999999999999999999998
Q ss_pred EEe
Q psy12695 243 NVI 245 (369)
Q Consensus 243 ~v~ 245 (369)
.|.
T Consensus 72 ~V~ 74 (76)
T cd05736 72 FVE 74 (76)
T ss_pred EEE
Confidence 885
No 74
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.27 E-value=2e-11 Score=89.10 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=63.8
Q ss_pred CCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 153 PDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
.+..+.+|+.+.|.|.+.| .|.|.|.|++++..+.... ....++. ...+.|.|.++..+|+|.|+|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~----~~~~~L~I~~~~~~DsG~Y~C 77 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMH----QQKDLLWFLPAALEDSGLYTC 77 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceee----ecCCeEEEccCCcccCeEEEE
Confidence 4667889999999999999 6889999999885432110 0111211 124689999999999999999
Q ss_pred EEEeCCceEEEEEEEEE
Q psy12695 228 RAKNGAGEVFTNISLNV 244 (369)
Q Consensus 228 ~a~n~~g~~~~~~~l~v 244 (369)
.+.|..|.....+.|.|
T Consensus 78 ~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 78 VVRNSTYCMKVSISLTV 94 (94)
T ss_pred EEcCCCccEEEEEEEEC
Confidence 99999999888887764
No 75
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.27 E-value=2.4e-11 Score=87.11 Aligned_cols=81 Identities=27% Similarity=0.412 Sum_probs=59.3
Q ss_pred CCeEEEEEEeeCC--CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 160 NENVTLSCRATGS--PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 160 G~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
|+.+.|.|.+.|. |.|.+.|.++++......... ............+.|.|.+++.+|+|.|.|.|.|..|..+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~----~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~ 76 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV----TRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK 76 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee----cccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence 7899999999999 888999998776442211100 0000011112356899999999999999999999999988
Q ss_pred EEEEEEE
Q psy12695 238 TNISLNV 244 (369)
Q Consensus 238 ~~~~l~v 244 (369)
.+..|.|
T Consensus 77 ~s~~v~v 83 (84)
T cd05742 77 ESTKVNI 83 (84)
T ss_pred EEEEEEE
Confidence 8888766
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.24 E-value=4.9e-12 Score=84.62 Aligned_cols=57 Identities=37% Similarity=0.518 Sum_probs=50.3
Q ss_pred CccEEEeecce---eChhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 67 GTQVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 67 ~~~~L~l~~n~---i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
.++.|+|++|+ |.+.+|.++++|+.|+|++|+|+.+++++|.++++|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57888888888 4578899999999999999999999999999999999999999975
No 77
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.24 E-value=5.1e-11 Score=85.65 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=62.9
Q ss_pred CCCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
..|..+.+.+|+.++|.|.+.+ .|.+.+.|++++..+.. + .....+.|.|.+++.+|+|.|.|.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----------~----~~~~~~~L~I~~v~~~DsG~Y~C~ 70 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----------R----AMDFNGILTIRNVQLSDAGTYVCT 70 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----------c----ccccCCEEEECCCCHHHCEEEEEE
Confidence 4567788999999999999974 78889999998854321 0 011246899999999999999999
Q ss_pred EEeCCceEEEEEEE
Q psy12695 229 AKNGAGEVFTNISL 242 (369)
Q Consensus 229 a~n~~g~~~~~~~l 242 (369)
|.|..|...+.+.|
T Consensus 71 a~n~~g~~~~~~~l 84 (85)
T cd05754 71 GSNMLDTDEATATL 84 (85)
T ss_pred EeccCCeEeEEEEE
Confidence 99999998887765
No 78
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.24 E-value=7.7e-11 Score=82.52 Aligned_cols=73 Identities=29% Similarity=0.438 Sum_probs=54.9
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
+.|.|.+.| .|.|.+.|++++..+...... ..+.+......+.|.|.++..+|+|.|.|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKP------RNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCc------ceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 999999999998766432110 1111222234578999999999999999999999999777654
No 79
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.23 E-value=5.1e-11 Score=81.90 Aligned_cols=69 Identities=25% Similarity=0.377 Sum_probs=52.2
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 242 (369)
++|.|.+.|.|.|.+.|++++..+.... .++.. ....|.|.+++.+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~~~~----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--------SRYHV----DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCC--------cEEEe----CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 3689999999999999999997654211 12221 23479999999999999999999987665555444
Q ss_pred E
Q psy12695 243 N 243 (369)
Q Consensus 243 ~ 243 (369)
+
T Consensus 69 ~ 69 (72)
T cd07702 69 T 69 (72)
T ss_pred E
Confidence 3
No 80
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.22 E-value=1.5e-10 Score=82.80 Aligned_cols=81 Identities=25% Similarity=0.455 Sum_probs=57.4
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc--eEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG--EVF 237 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g--~~~ 237 (369)
|++++|.|.+.|.|.+.+.|+++++....... ...+.........+.|.|.+++.+|+|.|.|.|.|..+ ...
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 75 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-----EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAF 75 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce-----EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCccee
Confidence 78999999999999999999987753211000 00011111112356899999999999999999999876 567
Q ss_pred EEEEEEEe
Q psy12695 238 TNISLNVI 245 (369)
Q Consensus 238 ~~~~l~v~ 245 (369)
.++.|+|.
T Consensus 76 ~sv~i~V~ 83 (84)
T cd05861 76 KKVNITVH 83 (84)
T ss_pred EEEEEEEe
Confidence 77777764
No 81
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.21 E-value=2.4e-10 Score=83.95 Aligned_cols=92 Identities=22% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
.++++.+.+|++++|.|.+.+.+.+.+.|++.++.......... ....++.+. .......|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRA-LRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccc-cccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence 35778899999999999999988899999975543221111100 112344432 2234568999999999999999999
Q ss_pred EeCCceEEEEEEEEE
Q psy12695 230 KNGAGEVFTNISLNV 244 (369)
Q Consensus 230 ~n~~g~~~~~~~l~v 244 (369)
.+... .++.+.|+|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87653 355555543
No 82
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.20 E-value=3.4e-10 Score=81.24 Aligned_cols=82 Identities=28% Similarity=0.404 Sum_probs=62.9
Q ss_pred eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
..+..|+.+.|.|.+.+.|.+.+.|++++..+..... ............|.|.++..+|+|.|.|.+.|..|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g 75 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR--------IGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc--------eeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence 4567899999999999999999999998876542111 00111122345799999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy12695 235 EVFTNISLNV 244 (369)
Q Consensus 235 ~~~~~~~l~v 244 (369)
....++.|.|
T Consensus 76 ~~~~~~~l~v 85 (85)
T cd05729 76 SINHTYKVDV 85 (85)
T ss_pred eEEEEEEEeC
Confidence 9888877754
No 83
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.20 E-value=5e-11 Score=83.72 Aligned_cols=65 Identities=28% Similarity=0.494 Sum_probs=53.6
Q ss_pred ccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695 148 IRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT 226 (369)
Q Consensus 148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 226 (369)
+...|....+.+|++++|.|.+.+.|.+ .+.|++++..+.. ..+.|.|.++ .+|+|.|+
T Consensus 3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------------------~~~~l~i~~~-~~dsG~Y~ 62 (78)
T cd05752 3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------------------TTNSYRIRAA-NNDSGEYR 62 (78)
T ss_pred EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------------------cCCeEEEeec-ccCCEEeE
Confidence 3445777889999999999999998864 6999999976521 2457899999 99999999
Q ss_pred EEEEeC
Q psy12695 227 CRAKNG 232 (369)
Q Consensus 227 C~a~n~ 232 (369)
|.|.|.
T Consensus 63 C~a~~~ 68 (78)
T cd05752 63 CQTQGS 68 (78)
T ss_pred EECCCC
Confidence 999875
No 84
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.19 E-value=1.2e-10 Score=82.47 Aligned_cols=78 Identities=29% Similarity=0.389 Sum_probs=52.8
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 241 (369)
++|.|.+.|.|.|.+.|++.+.......... .....++.+ ...+.|.|.++..+|+|.|.|.|.|..|.. +..+.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~-~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHT-CCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccc-cccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 4789999999999999999754321100000 001122222 124689999999999999999999999985 55555
Q ss_pred EEE
Q psy12695 242 LNV 244 (369)
Q Consensus 242 l~v 244 (369)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
No 85
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.18 E-value=8.9e-11 Score=82.53 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=49.6
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~ 238 (369)
++|.|.+.|.|.|.++|++++..+..... .+. ......+.|.|.++.. +|+|.|.|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~-------~~~--~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD-------PRV--TMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCC-------CCE--EEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 46899999999999999999876642111 111 1223457888888754 7899999999999998543
No 86
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.18 E-value=1.8e-10 Score=80.81 Aligned_cols=67 Identities=21% Similarity=0.435 Sum_probs=48.5
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~ 238 (369)
+.|.|.+.|.|.|.|+|++++..+..... .++. .....+.|.|..+.. .|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~-------~~~~--~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD-------PKVT--MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCC-------CCEE--EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 46899999999999999999876532111 1111 223356788877764 3789999999999998654
No 87
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.18 E-value=2.3e-10 Score=80.27 Aligned_cols=74 Identities=22% Similarity=0.402 Sum_probs=53.9
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 241 (369)
+.|.|.+.+ .|.+.+.|++++..+..... ...++........+.|.|.++..+|+|.|+|.|+|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-----PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCC-----CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999864 67889999999876642111 111222222334578999999999999999999999998877654
No 88
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.16 E-value=2.3e-10 Score=83.35 Aligned_cols=82 Identities=30% Similarity=0.563 Sum_probs=59.2
Q ss_pred CCccCCCCCeeec---cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695 146 PNIRPITPDVTAE---ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD 221 (369)
Q Consensus 146 p~i~~~~~~~~~~---~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D 221 (369)
|.+...|.++.+. .|+.+.|.|.+.|.|.|.++|++++..+..... .++.. ..+.|.|.++. .+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-------~~~~~----~~~~L~i~~~~~~~d 70 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-------SRYSL----VGGNLVISNPSKAKD 70 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-------CCEEE----ECCEEEEecCCccCC
Confidence 4455556666544 346799999999999999999999876632111 11211 24578998887 489
Q ss_pred CEEEEEEEEeCCceEEE
Q psy12695 222 SGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~~~~ 238 (369)
+|.|+|.|.|..|....
T Consensus 71 ~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 71 AGRYQCLASNIVGTVLS 87 (91)
T ss_pred CEEEEEEEEcCCCEEEe
Confidence 99999999999997543
No 89
>KOG3513|consensus
Probab=99.15 E-value=1.3e-10 Score=114.76 Aligned_cols=99 Identities=31% Similarity=0.553 Sum_probs=82.7
Q ss_pred CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224 (369)
Q Consensus 145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 224 (369)
.|.+...+++..+..|+++++.|.+.|.|.|.|+|++++..+...... .++.+ ..+.|.|.+++.+|+|.
T Consensus 331 ~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~------~~~~i----~~g~L~is~v~~~dsg~ 400 (1051)
T KOG3513|consen 331 PPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERD------PRYKI----DDGTLIISNVQESDSGV 400 (1051)
T ss_pred CchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCC------cceEE----eCCEEEEEecccccCeE
Confidence 578888899999999999999999999999999999999877632211 11222 36789999999999999
Q ss_pred EEEEEEeCCceEEEEEEEEEeecCCcccC
Q psy12695 225 YTCRAKNGAGEVFTNISLNVIKVETAVAQ 253 (369)
Q Consensus 225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 253 (369)
|.|.|+|..|...+.+.|.|....+....
T Consensus 401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~ 429 (1051)
T KOG3513|consen 401 YQCIAENKYGTIYANAELKVLASAPVFPL 429 (1051)
T ss_pred EEeeeecccceEeeeeEEEEEccCCCCCC
Confidence 99999999999999999999988554433
No 90
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.15 E-value=4.4e-10 Score=78.85 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=48.7
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~ 238 (369)
+.|.|.+.|.|.|.+.|++++..+..... .++.+ ....+.|.|..+.. +|+|.|.|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~-------~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKD-------PRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCC-------CcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46899999999999999999875431111 12221 22356888887642 4699999999999998654
Q ss_pred E
Q psy12695 239 N 239 (369)
Q Consensus 239 ~ 239 (369)
.
T Consensus 72 ~ 72 (77)
T cd05875 72 N 72 (77)
T ss_pred E
Confidence 3
No 91
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.10 E-value=5.8e-10 Score=80.86 Aligned_cols=85 Identities=24% Similarity=0.489 Sum_probs=62.2
Q ss_pred CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
+..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ...++.. ....|.|.+++.+|+|.|.|.|.+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-----~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-----PEERLLV----TEDGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-----cCceEEE----cCCCEEEccCCHHHCEEEEEEEec
Confidence 45678899999999999987 8889999999865432110 0112221 234699999999999999999987
Q ss_pred CC-ceEEEEEEEEEee
Q psy12695 232 GA-GEVFTNISLNVIK 246 (369)
Q Consensus 232 ~~-g~~~~~~~l~v~~ 246 (369)
.. +.....+.|.|..
T Consensus 73 ~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 73 HGFKQTLATYSLNVLE 88 (89)
T ss_pred CccceeEeEEEEEEec
Confidence 65 4466677777753
No 92
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.07 E-value=6.1e-10 Score=80.83 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccc-----cCCcceEEEEe---ecceeeEEEcccCCCCCEEEE
Q psy12695 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA-----NMNKRQYIIKT---INSLSNLTIVAVTMSDSGIYT 226 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~ 226 (369)
+.+.+|++++|.|.+.+.+.+.+.|++.++.......... .....++.... ..+...|+|.+++.+|+|+|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 4678999999999999999999999976533211100000 00111222222 234567999999999999999
Q ss_pred EEEEeCCceE
Q psy12695 227 CRAKNGAGEV 236 (369)
Q Consensus 227 C~a~n~~g~~ 236 (369)
|.+.|..+..
T Consensus 82 C~v~~~~~~~ 91 (94)
T cd07690 82 CEVEDKKEEV 91 (94)
T ss_pred EEECCccceE
Confidence 9999987654
No 93
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.06 E-value=1.6e-09 Score=77.21 Aligned_cols=69 Identities=22% Similarity=0.465 Sum_probs=54.6
Q ss_pred CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
|.+..+..|+++.|.|.+.+ +.+.+.|++++..+.... .++.+ ..+.|.|.+++.+|+|.|+|.+.+
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--------~r~~~----~~~~L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--------AKYLL----YRDGLLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--------ceEEE----ECCcEEEeCCCHHHCEEEEEEEEe
Confidence 56788999999999999864 678999999998765321 12222 245799999999999999999987
Q ss_pred CC
Q psy12695 232 GA 233 (369)
Q Consensus 232 ~~ 233 (369)
..
T Consensus 70 ~~ 71 (87)
T cd05873 70 KS 71 (87)
T ss_pred cc
Confidence 64
No 94
>KOG4237|consensus
Probab=99.03 E-value=5.2e-11 Score=104.92 Aligned_cols=110 Identities=25% Similarity=0.380 Sum_probs=92.5
Q ss_pred cCcCcCCCCCC----CeecccC----------CceEEEecCCCCCccCCCCCC---CccEEEeecce---eChhhccCCc
Q psy12695 28 CLQVFAECPST----CECKWKG----------GKETVLCKAKNFTTIPEQLDV---GTQVLDLSDNF---LDRYTFRKLI 87 (369)
Q Consensus 28 ~~~~~~~cp~~----C~c~~~~----------~~~~~~c~~~~l~~ip~~~~~---~~~~L~l~~n~---i~~~~f~~l~ 87 (369)
..+....|+.. =+|+..+ +...++...|+++.||+..+. .++.||||+|+ |.++||.||.
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA 115 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence 45677778761 2555443 235688999999999998764 58999999999 5699999999
Q ss_pred ccCeeeccC-CcccccCCcccccccccccccccccceecccCCcccccCcC
Q psy12695 88 NLVELDLSY-NQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137 (369)
Q Consensus 88 ~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l 137 (369)
+|.+|-|-+ |+|+.||.++|.+|..|+.|.|.-|++.++..++|..++.+
T Consensus 116 ~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l 166 (498)
T KOG4237|consen 116 SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL 166 (498)
T ss_pred hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence 998887665 99999999999999999999999999999999999988886
No 95
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.02 E-value=9.5e-10 Score=78.35 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=55.9
Q ss_pred CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
....+.+|+.++|.|.+. +.+.+.+.|++++..+.. ......|.|.+++.+|+|.|.|.+.+
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----------------~~~~~~l~I~~~~~~dsG~Y~C~~~~ 69 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----------------SHSNSNLSIPQATLSDSGSYHCSGII 69 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----------------cCCCceEEECccCHHHCEEEEEEEEe
Confidence 344689999999999985 456678999998865431 11245799999999999999999999
Q ss_pred CCceE-EEEEEEE
Q psy12695 232 GAGEV-FTNISLN 243 (369)
Q Consensus 232 ~~g~~-~~~~~l~ 243 (369)
..|.. +..+.++
T Consensus 70 ~~~~~~s~~~~i~ 82 (83)
T cd05753 70 GSYDYSSEPVSIT 82 (83)
T ss_pred CCceecCCCEEEE
Confidence 98763 3334443
No 96
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.00 E-value=2.8e-09 Score=77.30 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=59.4
Q ss_pred CeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 154 DVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
.+.+.+|..+.|.|...+ .|.|.+.|++++..+... ..+ . . ..+.|.|.++..+|+|.|+|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--------~~~-~-~---~~~~L~I~~v~~~DsG~YtC~ 70 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--------RKR-F-V---KGSKLLIQNVTEEDAGNYTCK 70 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--------ccE-E-e---cCCEEEEeeCChhhCEEEEEE
Confidence 456889999999998753 257899999999776421 111 1 1 457899999999999999999
Q ss_pred EEeCCceEEEEEEEEE
Q psy12695 229 AKNGAGEVFTNISLNV 244 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v 244 (369)
+.|..+.....++..+
T Consensus 71 ~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 71 LTFTHNGKQYNVTRTI 86 (92)
T ss_pred EEecCCCEEEEEEEEE
Confidence 9999888766655444
No 97
>KOG3513|consensus
Probab=98.99 E-value=2.7e-09 Score=105.68 Aligned_cols=145 Identities=25% Similarity=0.322 Sum_probs=105.8
Q ss_pred ccccCCcccccccccccccccc-cceecccCC--cccccCcCccccccCC--------------------CCccCCCC--
Q psy12695 99 IQFVPSHILDSILELRELKLSG-NPIQKITHE--AFINVPKLNLEDFACS--------------------PNIRPITP-- 153 (369)
Q Consensus 99 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~--~f~~l~~l~~~~~~c~--------------------p~i~~~~~-- 153 (369)
....|.....|+.+-.-|...+ ++-..+..+ .|.++..-+...|+|. |.+...+-
T Consensus 355 a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~ 434 (1051)
T KOG3513|consen 355 ASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVER 434 (1051)
T ss_pred ecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccce
Confidence 4566777777887777776322 122233333 4667777777778882 44444443
Q ss_pred CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
...+..|.++.+.|...+.|.|.+.|.+.++.+.+ ..|+.+ ..++.|.|.+++.+|+|.|+|.|.|..
T Consensus 435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~---------~~r~~i---~edGtL~I~n~t~~DaG~YtC~A~N~~ 502 (1051)
T KOG3513|consen 435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ---------SGRIRI---LEDGTLEISNVTRSDAGKYTCVAENKL 502 (1051)
T ss_pred EEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc---------CceEEE---CCCCcEEecccCcccCcEEEEEEEccc
Confidence 34678899999999999999999999999874332 223332 246899999999999999999999999
Q ss_pred ceEEEEEEEEEeecCCcccCCC
Q psy12695 234 GEVFTNISLNVIKVETAVAQPD 255 (369)
Q Consensus 234 g~~~~~~~l~v~~~~~~~~~~~ 255 (369)
|.+...+.|.|...+.....+.
T Consensus 503 G~a~~~~~L~Vkd~tri~~~P~ 524 (1051)
T KOG3513|consen 503 GKAESTGNLIVKDATRITLAPS 524 (1051)
T ss_pred CccceEEEEEEecCceEEeccc
Confidence 9999999999998876655443
No 98
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3.2e-10 Score=75.73 Aligned_cols=57 Identities=35% Similarity=0.547 Sum_probs=53.4
Q ss_pred cccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695 87 INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~ 143 (369)
++|+.|+|++|+|+.|++++|.++++|+.|+|++|.|+.+++++|.++++|...++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 579999999999999999999999999999999999999999999999998776654
No 99
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.98 E-value=1.5e-08 Score=73.53 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=59.6
Q ss_pred CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
.+++++.+|+++.|.|.+.+.....+.|++.+............ ...||.... ......|+|.+++.+|+|.|.|.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~-~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPL-KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCcccc-CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 46789999999999999998877889999888655432222222 344555443 3455679999999999999999986
Q ss_pred e
Q psy12695 231 N 231 (369)
Q Consensus 231 n 231 (369)
.
T Consensus 83 t 83 (95)
T cd05881 83 T 83 (95)
T ss_pred c
Confidence 5
No 100
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.97 E-value=4.4e-09 Score=75.48 Aligned_cols=83 Identities=28% Similarity=0.336 Sum_probs=57.4
Q ss_pred CCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 160 NENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
|+++.|.|.+.+.+.+ .+.|..+++......... ..+..........+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVS---ENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK 77 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecc---cccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence 7899999999876644 679988776432110000 00000001122357899999999999999999999999888
Q ss_pred EEEEEEEe
Q psy12695 238 TNISLNVI 245 (369)
Q Consensus 238 ~~~~l~v~ 245 (369)
....|.|.
T Consensus 78 ~~t~~~V~ 85 (86)
T cd05862 78 NSTIVIVH 85 (86)
T ss_pred ccEEEEEe
Confidence 88888775
No 101
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.93 E-value=7.5e-09 Score=75.02 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=58.7
Q ss_pred CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE-eC
Q psy12695 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-NG 232 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n~ 232 (369)
.+.+.+|+.+.|.|.. +.|.|.+.|++++........ . ....++.. ..+.|.|.+++.+|+|.|+|.+. |.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~--~-~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~ 76 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEE--V-KTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHS 76 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCcccc--c-cccccEEE----ecCeEEEeeCChhHCEEEEEEEEccC
Confidence 3567899999999996 588899999985321110000 0 01112222 23569999999999999999998 56
Q ss_pred CceEEEEEEEEEee
Q psy12695 233 AGEVFTNISLNVIK 246 (369)
Q Consensus 233 ~g~~~~~~~l~v~~ 246 (369)
.+.....++|.|..
T Consensus 77 ~~~~~~~~~l~v~~ 90 (91)
T cd05871 77 FSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEEEEEEEEec
Confidence 67677788887753
No 102
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.90 E-value=4.8e-08 Score=69.50 Aligned_cols=83 Identities=42% Similarity=0.707 Sum_probs=63.2
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeC-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.. ..++..........|.|.++...|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE---------SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC---------CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 456788999999999999888889999998 544431 1122222222256899999999999999999998
Q ss_pred CCceEEEEEEEEE
Q psy12695 232 GAGEVFTNISLNV 244 (369)
Q Consensus 232 ~~g~~~~~~~l~v 244 (369)
..+.....+.|.|
T Consensus 73 ~~~~~~~~~~l~V 85 (86)
T smart00410 73 SSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEEEEEE
Confidence 8888777766665
No 103
>smart00409 IG Immunoglobulin.
Probab=98.90 E-value=4.8e-08 Score=69.50 Aligned_cols=83 Identities=42% Similarity=0.707 Sum_probs=63.2
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeC-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.. ..++..........|.|.++...|+|.|.|.+.+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~ 72 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE---------SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN 72 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC---------CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence 456788999999999999888889999998 544431 1122222222256899999999999999999998
Q ss_pred CCceEEEEEEEEE
Q psy12695 232 GAGEVFTNISLNV 244 (369)
Q Consensus 232 ~~g~~~~~~~l~v 244 (369)
..+.....+.|.|
T Consensus 73 ~~~~~~~~~~l~V 85 (86)
T smart00409 73 SSGSASSTTTLTV 85 (86)
T ss_pred CCCeEEEEEEEEE
Confidence 8888777766665
No 104
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.90 E-value=5.6e-09 Score=75.63 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=56.7
Q ss_pred CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
....+.+|+.+.|.|.. .|.|.+.+.|++++....-. ...+++ .....+.|.|.+|+.+|+|.|.|.|+|
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~------~d~r~~---~~~~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP------EDGRRF---VSQTNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc------cCCCeE---EeCCCCcEEEeecCHhhCceeEEEEEe
Confidence 45678999999999987 78999999999987432110 112222 223468999999999999999999999
Q ss_pred CCceE
Q psy12695 232 GAGEV 236 (369)
Q Consensus 232 ~~g~~ 236 (369)
.....
T Consensus 82 ~~~~~ 86 (96)
T cd05727 82 PSSTK 86 (96)
T ss_pred cccCC
Confidence 87543
No 105
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.89 E-value=1.2e-08 Score=72.06 Aligned_cols=71 Identities=38% Similarity=0.696 Sum_probs=56.3
Q ss_pred eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...+.+..+..+|+|.|.|.+.+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------------------QNGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------------------SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------------------eeeeeeeeeccccCEEEEEEEEeCCC
Confidence 56889999999999999999999999988665421 11277788999999999999999665
Q ss_pred -eEEEEEEEEE
Q psy12695 235 -EVFTNISLNV 244 (369)
Q Consensus 235 -~~~~~~~l~v 244 (369)
..+..+.|.|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 3556666654
No 106
>KOG4221|consensus
Probab=98.88 E-value=1.1e-08 Score=101.51 Aligned_cols=99 Identities=26% Similarity=0.422 Sum_probs=78.6
Q ss_pred ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
|...|.+.++.+|+.+.|.|.+.|.|.|.|.|.+++..+.-.+ .++. ..+.+.|.|.+++..|+|.|+|
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--------~riv---l~g~~slliS~a~~~dSg~YtC 308 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--------YRIV---LVGGSSLLISNATDDDSGKYTC 308 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--------eEEE---EecccceEEeccccccCceEEE
Confidence 3445788899999999999999999999999999988775322 1222 2346789999999999999999
Q ss_pred EEEeCCceEEEEEEEEEeecCCcccCCCCc
Q psy12695 228 RAKNGAGEVFTNISLNVIKVETAVAQPDPV 257 (369)
Q Consensus 228 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~ 257 (369)
.|+|..-...+.+.|+|..+|.+...+...
T Consensus 309 ~Atn~~D~idasaev~V~a~P~~~~~p~~l 338 (1381)
T KOG4221|consen 309 RATNTNDSIDASAEVTVLAPPGFTKAPTTL 338 (1381)
T ss_pred EecCCCcccccceEEEEEcCCCCCCCCcce
Confidence 999977667777888888887666555443
No 107
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.87 E-value=1.5e-08 Score=67.64 Aligned_cols=63 Identities=48% Similarity=0.778 Sum_probs=50.0
Q ss_pred cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
+|+.+.|.|.+.+.|.+.+.|++++..+.. . . ........|.|.+++..|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~-------~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--S-------N----RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--C-------C----EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999999999999999998865541 0 0 1122356899999999999999999998765
No 108
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.81 E-value=2.1e-08 Score=72.50 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=56.4
Q ss_pred CCCeeeccCCeEEEEEE-eeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEE
Q psy12695 152 TPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRA 229 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a 229 (369)
.+.+.+.+|+.+.|.|. ..|.|.|.|.|++++..... ...+..+ ...+.|.|.+++.+|+| .|.|.|
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--------~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--------QDERVSM---GQNGNLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc--------ccccEEE---CCCceEEEEEEehhhCCCCeEEEE
Confidence 36788999999999998 59999999999976543321 1223222 23589999999999999 799999
Q ss_pred EeCCce
Q psy12695 230 KNGAGE 235 (369)
Q Consensus 230 ~n~~g~ 235 (369)
.|....
T Consensus 79 ~~~~~~ 84 (95)
T cd05845 79 HFPGLR 84 (95)
T ss_pred Eccccc
Confidence 998643
No 109
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.78 E-value=1e-07 Score=69.15 Aligned_cols=89 Identities=18% Similarity=0.329 Sum_probs=67.6
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
..+.|.+|+.+.|.|.+...|+|. +.|.+.+..+.+.+......... ....-.+.|.+..++.+|.|.|+|.|.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~----~~~rY~S~L~L~Rlk~~E~G~YTf~a~N 86 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE----SNNRYVSELHLTRLKGTEGGTYTFLVSN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEecc----CceEEEEEEEEeecChhhCcEEEEEEEC
Confidence 457899999999999999999998 99999887654333211100000 0001247899999999999999999999
Q ss_pred CCceEEEEEEEEEe
Q psy12695 232 GAGEVFTNISLNVI 245 (369)
Q Consensus 232 ~~g~~~~~~~l~v~ 245 (369)
..+..+.++.|.|.
T Consensus 87 ~~~~~s~tF~l~v~ 100 (101)
T cd05860 87 SDASASVTFNVYVN 100 (101)
T ss_pred CCCeEEEEEEEEEe
Confidence 99999988888764
No 110
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.76 E-value=8.2e-08 Score=72.41 Aligned_cols=84 Identities=26% Similarity=0.352 Sum_probs=58.2
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeE-----eeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS 222 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~ 222 (369)
..+..+.+.+|++++|.|.+.+.+.+.+.|++.... +.............++.+.. ......|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 346778999999999999998877888999985421 11111110011233444432 23567899999999999
Q ss_pred EEEEEEEEeCC
Q psy12695 223 GIYTCRAKNGA 233 (369)
Q Consensus 223 G~Y~C~a~n~~ 233 (369)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998754
No 111
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=7.6e-08 Score=72.69 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=57.3
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeecccccc----cCCcceEEEEeec-ceeeEEEcccCC
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLA----NMNKRQYIIKTIN-SLSNLTIVAVTM 219 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~L~I~~v~~ 219 (369)
+.|..+.+.+|++++|.|.+.+ +.+.+.||+... .+........ .....++...... ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3567789999999999999988 677899998642 1111111000 1123455544332 457899999999
Q ss_pred CCCEEEEEEEEeCC
Q psy12695 220 SDSGIYTCRAKNGA 233 (369)
Q Consensus 220 ~D~G~Y~C~a~n~~ 233 (369)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998754
No 112
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.73 E-value=9.5e-08 Score=71.63 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=57.2
Q ss_pred cCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695 149 RPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 149 ~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 222 (369)
...|..+.+.+|++++|.|.+.+.. ...+.|++... .+.............++..........|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3456778999999999999997665 56799998531 12211111111122355554444556899999999999
Q ss_pred EEEEEEEEeC
Q psy12695 223 GIYTCRAKNG 232 (369)
Q Consensus 223 G~Y~C~a~n~ 232 (369)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998654
No 113
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.72 E-value=2e-07 Score=69.93 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=59.0
Q ss_pred cCCeEEEEEEeeCCC------CCeEEEEeCC-----eE-eeecccccc---cCCcceEEE-EeecceeeEEEcccCCCCC
Q psy12695 159 ENENVTLSCRATGSP------VPKIKWIFKE-----KI-IANISSGLA---NMNKRQYII-KTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p------~p~i~W~~~~-----~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~~L~I~~v~~~D~ 222 (369)
.|++++|.|.+...+ .+.|.|++.. .. +........ ...+.+... ....+...|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4589999862 11 111111110 011112221 1234567999999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEee
Q psy12695 223 GIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 223 G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888864
No 114
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=81.12 Aligned_cols=94 Identities=21% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCeeeccCCeEEEEEEeeCCC-----------CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695 153 PDVTAEENENVTLSCRATGSP-----------VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p-----------~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 221 (369)
..+.+.+|+++.|.|.+.+.| .+.+.|++.+....-.....................+.|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 567889999999999987754 348999998754211000000000000000011235689999999999
Q ss_pred CEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 222 SGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
+|.|.|.|.|..|.....+.|.|..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec
Confidence 9999999999998888888888854
No 115
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.70 E-value=9.1e-08 Score=81.54 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=53.5
Q ss_pred CCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 153 PDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
.+..+.+|+.+.|.|.+.+ .|.|.+.|++++..+.... ++. ...+.+.|.|.+++.+|+|.|+|
T Consensus 137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~---------r~~--~~~~~~~L~I~~V~~~DsG~YtC 205 (227)
T PHA02826 137 INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD---------RIQ--LRNNNSTLVIKSATHDDSGIYTC 205 (227)
T ss_pred ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC---------CEE--EeCCCCEEEECcCCHHhCEEEEE
Confidence 4456788999999999863 4678999999998764211 222 22345689999999999999999
Q ss_pred EEEeCC
Q psy12695 228 RAKNGA 233 (369)
Q Consensus 228 ~a~n~~ 233 (369)
.|....
T Consensus 206 ~a~~~~ 211 (227)
T PHA02826 206 NLRFNK 211 (227)
T ss_pred EEEEeE
Confidence 998764
No 116
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.70 E-value=4.9e-08 Score=65.80 Aligned_cols=61 Identities=34% Similarity=0.516 Sum_probs=43.4
Q ss_pred CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecc--eeeEEEcccCCCCCEEEEEEE
Q psy12695 160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS--LSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a 229 (369)
|+.++|.|.+ .+.+.+.+.|+++++........ ....... ...|.|.+++.+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT---------NRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE---------EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCccee---------EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 78888899999988654321110 0000000 113999999999999999986
No 117
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.67 E-value=3.5e-07 Score=68.57 Aligned_cols=88 Identities=22% Similarity=0.359 Sum_probs=58.5
Q ss_pred cCCeEEEEEEeeCCC------CCeEEEEeCCe----E-eeeccccc---c-cCCcceEEEEe-ecceeeEEEcccCCCCC
Q psy12695 159 ENENVTLSCRATGSP------VPKIKWIFKEK----I-IANISSGL---A-NMNKRQYIIKT-INSLSNLTIVAVTMSDS 222 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p------~p~i~W~~~~~----~-~~~~~~~~---~-~~~~~~~~~~~-~~~~~~L~I~~v~~~D~ 222 (369)
.|++++|.|.+...| ...|.|++... . ........ . ..-..++.+.. ..+...|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34699998641 1 11111000 0 00112333321 13356899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEee
Q psy12695 223 GIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 223 G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
|+|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999888888888864
No 118
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.66 E-value=2.7e-07 Score=68.03 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=53.1
Q ss_pred eeccCCeEEEEEEeeCC--CCCeEEEEeCCe--E---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 156 TAEENENVTLSCRATGS--PVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~--p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
.+.+|++++|.|.+.+. ....+.|+++.. . +.............++.+........|.|.+++.+|+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998765 456799998542 1 1211111111123466665555667899999999999999999
Q ss_pred EEeC
Q psy12695 229 AKNG 232 (369)
Q Consensus 229 a~n~ 232 (369)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 119
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.66 E-value=2.5e-07 Score=64.55 Aligned_cols=66 Identities=20% Similarity=0.348 Sum_probs=49.4
Q ss_pred EEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695 163 VTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 163 ~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
+.|+|.. .|.|++.|+||+++..+...... ......+. ..+.|.+.....+|.+.|+|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t-----~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVS-----VSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEE-----EEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 6799998 57999999999999988543211 11222222 3568999888999999999999998865
No 120
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.66 E-value=2.6e-07 Score=69.97 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCCe------Eeeecccccc-------cCCcceEEEEeecceeeEEE
Q psy12695 152 TPDVTAEENENVTLSCRATGSP----VPKIKWIFKEK------IIANISSGLA-------NMNKRQYIIKTINSLSNLTI 214 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~I 214 (369)
+..+.+..|+.++|.|.+.... ...|.|.+... .+.....+.. ..++..|......+..++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 5678899999999999997633 35799954211 1111111111 01111222223346678999
Q ss_pred cccCCCCCEEEEEEEEeCCce
Q psy12695 215 VAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 215 ~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
.+++.+|+|+|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999998754
No 121
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.64 E-value=1.9e-07 Score=84.63 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=58.4
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEeeecccccccCCcceEEEEe--------ecceeeEEEcccCC
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKIIANISSGLANMNKRQYIIKT--------INSLSNLTIVAVTM 219 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~I~~v~~ 219 (369)
.|..+.+..|+.++|.|.+.|.|.+ .+.|++++..+....... ..++.... ....+.|.|.+++.
T Consensus 226 ~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~ 301 (326)
T PHA02785 226 LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDG----DGRISVANKIYTTDKRRVITSRLNINPVKE 301 (326)
T ss_pred CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCC----ceeEEEecCccccccceeeeEEEEECCcch
Confidence 3567778889999999999998874 799999998664321100 01111100 01246899999999
Q ss_pred CCCEEEEEEEEeCCceE
Q psy12695 220 SDSGIYTCRAKNGAGEV 236 (369)
Q Consensus 220 ~D~G~Y~C~a~n~~g~~ 236 (369)
+|+|.|+|.|.|..|..
T Consensus 302 ~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 302 EDATTFTCMAFTIPSIS 318 (326)
T ss_pred hcCeeeEEEEEeccCce
Confidence 99999999999988543
No 122
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=5.8e-07 Score=67.54 Aligned_cols=88 Identities=22% Similarity=0.419 Sum_probs=58.3
Q ss_pred cCCeEEEEEEeeCCC------------CCeEEEEeCCe----Eeeecccccc---cCCcceEEEEe---ecceeeEEEcc
Q psy12695 159 ENENVTLSCRATGSP------------VPKIKWIFKEK----IIANISSGLA---NMNKRQYIIKT---INSLSNLTIVA 216 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p------------~p~i~W~~~~~----~~~~~~~~~~---~~~~~~~~~~~---~~~~~~L~I~~ 216 (369)
.|++++|.|...... .+.|.|++... .+........ ..-..|+.+.. ..+...|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999996543 45899998531 1111111110 00112444432 34678999999
Q ss_pred cCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
++.+|+|+|.|.+.+.....+..+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998877777777777753
No 123
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.59 E-value=3.8e-07 Score=67.03 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=57.3
Q ss_pred ccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeeccc-----ccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 158 EENENVTLSCRATG-SPVPKIKWIFKEKIIANISS-----GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 158 ~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
..|++|+|.|.... .....+.|++.......... ... ........+........|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998855 55567999997543332111 110 111111122334456889999999999999999998
Q ss_pred eCCceE-EEEEEEEE
Q psy12695 231 NGAGEV-FTNISLNV 244 (369)
Q Consensus 231 n~~g~~-~~~~~l~v 244 (369)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877663 56677665
No 124
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.59 E-value=5.4e-07 Score=68.44 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=53.5
Q ss_pred CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeC----Ce--EeeecccccccCCc----ceEEE--EeecceeeEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFK----EK--IIANISSGLANMNK----RQYII--KTINSLSNLTI 214 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~----~~--~~~~~~~~~~~~~~----~~~~~--~~~~~~~~L~I 214 (369)
.+..+.+.+|++++|.|.....+ ...|.|++. +. .+............ .+... ....+...|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45778899999999999986543 235999752 11 12111111110011 12211 12234668999
Q ss_pred cccCCCCCEEEEEEEEeCCce
Q psy12695 215 VAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 215 ~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
.+++.+|+|.|.|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987653
No 125
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.58 E-value=3.8e-07 Score=69.56 Aligned_cols=82 Identities=27% Similarity=0.382 Sum_probs=56.8
Q ss_pred CCCCCeeeccCCeEEEEEEeeC--CCCCeEEEEeCC--e---Eeeecccccc-----cCCcceEEEEeec--ceeeEEEc
Q psy12695 150 PITPDVTAEENENVTLSCRATG--SPVPKIKWIFKE--K---IIANISSGLA-----NMNKRQYIIKTIN--SLSNLTIV 215 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~--~---~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~L~I~ 215 (369)
+.|..+.+.+|++++|.|.+.+ .+.+.+.|++.. . .+........ .....++.+.... ....|.|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3467788999999999999977 677889999853 1 1111111100 1123456555444 56789999
Q ss_pred ccCCCCCEEEEEEEEe
Q psy12695 216 AVTMSDSGIYTCRAKN 231 (369)
Q Consensus 216 ~v~~~D~G~Y~C~a~n 231 (369)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 126
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.57 E-value=9.2e-07 Score=65.20 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=53.0
Q ss_pred CeEEEEEEeeCCC---CCeEEEEeCCeE----eeec--ccccccCC--cceEEEEe-ecceeeEEEcccCCCCCEEEEEE
Q psy12695 161 ENVTLSCRATGSP---VPKIKWIFKEKI----IANI--SSGLANMN--KRQYIIKT-INSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 161 ~~~~l~C~~~g~p---~p~i~W~~~~~~----~~~~--~~~~~~~~--~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
++++|.|...+.+ ...|.|++.... +... ........ ..+..+.. ..+...|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999997654 346999986531 1101 00000001 11222111 11467899999999999999999
Q ss_pred EEe-CCceEEEEEEEEE
Q psy12695 229 AKN-GAGEVFTNISLNV 244 (369)
Q Consensus 229 a~n-~~g~~~~~~~l~v 244 (369)
+.. ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6688888888876
No 127
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.56 E-value=6.1e-07 Score=66.43 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCeEEEEEEeeCCC---CCeEEEEeCCeE--eeeccccccc------CCcceEEEE---eecceeeEEEcccCCCCCEEE
Q psy12695 160 NENVTLSCRATGSP---VPKIKWIFKEKI--IANISSGLAN------MNKRQYIIK---TINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 160 G~~~~l~C~~~g~p---~p~i~W~~~~~~--~~~~~~~~~~------~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y 225 (369)
|++++|.|...+.. ...+.|++.... +......... .-..|+.+. ...+...|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986332 236899986521 1111111000 001233221 123456899999999999999
Q ss_pred EEEEEeCCceEEEEEEEEE
Q psy12695 226 TCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 226 ~C~a~n~~g~~~~~~~l~v 244 (369)
.|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888777777776
No 128
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.56 E-value=7.4e-07 Score=67.94 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=53.2
Q ss_pred CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCCe------Eeeecccccc-cCCc----ceEEE--EeecceeeEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFKEK------IIANISSGLA-NMNK----RQYII--KTINSLSNLT 213 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~~~~~~~~~~-~~~~----~~~~~--~~~~~~~~L~ 213 (369)
.|..+.+.+|+.++|.|...... ...+.|++... .+........ .... .|..+ ....+...|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46778899999999999986532 24599987431 1111111110 0001 12221 1223457899
Q ss_pred EcccCCCCCEEEEEEEEeCCce
Q psy12695 214 IVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 214 I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
|.+++.+|+|.|.|.+.|....
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999987643
No 129
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.55 E-value=5.3e-07 Score=65.39 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=53.9
Q ss_pred CeeeccCCeEEEEEEe-e----CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 154 DVTAEENENVTLSCRA-T----GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
.+.+.+|....|.|.- . ..+.|.+.|+|++..+.... .++. ...+...|.|.++..+|+|.|+|.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~--------~~~~--~~~~~~~L~I~~v~~~D~G~YtC~ 73 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN--------EKFY--SLKGSTYLHIIDVSLNDSGYYTCK 73 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC--------cceE--ecCCCCEEEEEEcChhhCEEEEEE
Confidence 3557789999999963 2 34677999999997764211 1111 112245799999999999999999
Q ss_pred EEeCCceEEEE
Q psy12695 229 AKNGAGEVFTN 239 (369)
Q Consensus 229 a~n~~g~~~~~ 239 (369)
+.+..|...-.
T Consensus 74 ~~~~~~g~~y~ 84 (95)
T cd05897 74 LQFTHEGKKYN 84 (95)
T ss_pred EEEeeCCEEEE
Confidence 99987665433
No 130
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.54 E-value=4.4e-07 Score=64.26 Aligned_cols=78 Identities=23% Similarity=0.464 Sum_probs=55.6
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE-e
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-N 231 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n 231 (369)
.+.++.+|+++.|.|...+. .+.+.|++++..+... .++.. ....|.|..++.+|+|.|.|.+. +
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---------~r~~~----~~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---------FSYRV----GTDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---------cceEE----eCCCCEEEECCHhhCEEEEEEEecC
Confidence 46789999999999999776 5699999999876421 11111 13358899999999999999985 3
Q ss_pred CCceEEEEEEEEE
Q psy12695 232 GAGEVFTNISLNV 244 (369)
Q Consensus 232 ~~g~~~~~~~l~v 244 (369)
.+...-..+.|.|
T Consensus 70 gf~~~~~~y~l~v 82 (85)
T cd05872 70 GFQQLVASYSLNV 82 (85)
T ss_pred CCeEEEEEEEEEE
Confidence 3333444445544
No 131
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.54 E-value=1.4e-06 Score=65.55 Aligned_cols=88 Identities=25% Similarity=0.401 Sum_probs=57.6
Q ss_pred cCCeEEEEEEeeCCC----------CCeEEEEeCC--eE--eeecccccc---cCCcceEEEE---eecceeeEEEcccC
Q psy12695 159 ENENVTLSCRATGSP----------VPKIKWIFKE--KI--IANISSGLA---NMNKRQYIIK---TINSLSNLTIVAVT 218 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p----------~p~i~W~~~~--~~--~~~~~~~~~---~~~~~~~~~~---~~~~~~~L~I~~v~ 218 (369)
.|++++|.|.....+ ...|.|++.. +. +........ ..-+.|+.+. .......|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997644 2569999852 11 111111110 0011233331 22355789999999
Q ss_pred CCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 219 MSDSGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 219 ~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
.+|+|+|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777778888888764
No 132
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.54 E-value=6.4e-07 Score=65.25 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=56.5
Q ss_pred CeeeccCCeEEEEEEe-e----------CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695 154 DVTAEENENVTLSCRA-T----------GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~-~----------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 222 (369)
...+.+|+.+.|.|.. . ......+.|+|++.......... +...| .......|.|.++..+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~--~~~~R----i~~~~~~Lwf~Pa~~eDS 82 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII--FDGVR----MSKEEDSIWFRPAELQDS 82 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc--cccee----EEEeCCEEEEEeCChhhC
Confidence 3568899999999986 1 11233799999874333211111 11112 122356899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEE
Q psy12695 223 GIYTCRAKNGAGEVFTNISLNV 244 (369)
Q Consensus 223 G~Y~C~a~n~~g~~~~~~~l~v 244 (369)
|.|+|.+.|........+.|+|
T Consensus 83 G~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 83 GLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eEEEEEECCCCcceEEEEEEEC
Confidence 9999999998866666665543
No 133
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.52 E-value=4.2e-08 Score=60.17 Aligned_cols=40 Identities=50% Similarity=0.651 Sum_probs=32.4
Q ss_pred cccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695 87 INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
++|++|+|++|+|+.|++ .|..|++|+.|+|++|+|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence 468899999999999876 4788999999999999888765
No 134
>KOG0617|consensus
Probab=98.52 E-value=1.6e-08 Score=79.63 Aligned_cols=100 Identities=22% Similarity=0.351 Sum_probs=75.2
Q ss_pred ceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 122 (369)
.+++..+.|.|+.+|+.+. .++++|++++|+|+ +...+.|++|+.|+++.|++..+|.+ |+.++.|+.|||..|.
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn 113 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc
Confidence 4567888899999998884 57899999999987 56788899999999999999888775 8889999999998888
Q ss_pred eec-ccCCcccccCc-----CccccccCCCC
Q psy12695 123 IQK-ITHEAFINVPK-----LNLEDFACSPN 147 (369)
Q Consensus 123 l~~-~~~~~f~~l~~-----l~~~~~~c~p~ 147 (369)
+.. .-++.|-.+.. |..++|.-.|+
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndfe~lp~ 144 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDFEILPP 144 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence 764 22344443333 34455554443
No 135
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.52 E-value=1.4e-06 Score=64.42 Aligned_cols=83 Identities=24% Similarity=0.362 Sum_probs=53.1
Q ss_pred eEEEEEEeeCCC---CCeEEEEeCCe-----Eeee--cccccc----cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 162 NVTLSCRATGSP---VPKIKWIFKEK-----IIAN--ISSGLA----NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 162 ~~~l~C~~~g~p---~p~i~W~~~~~-----~~~~--~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
+++|.|.....+ ...|.|++... .+.. ...... ..++.+|..........|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999986544 34799998431 1111 110111 112233333233456789999999999999999
Q ss_pred EEEe-CCceEEEEEEEEE
Q psy12695 228 RAKN-GAGEVFTNISLNV 244 (369)
Q Consensus 228 ~a~n-~~g~~~~~~~l~v 244 (369)
.+.+ +.|..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677777777776
No 136
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.52 E-value=2.3e-07 Score=64.39 Aligned_cols=73 Identities=41% Similarity=0.591 Sum_probs=48.0
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 224 (369)
|.|...+.......+. +.|.|.+.+.+ .+.+.|+ ....... ..........+.|.|.++..+|.|.
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-----------~~~~~~~~~~~~L~i~~v~~~~~g~ 68 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-----------SNSRGSSSSNSTLTISNVTRSDNGT 68 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-----------EEEEEEEEEEEEEEESSCCGGGTEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-----------eeeeeccceeeEEEEccCCHHhCcE
Confidence 3444444444444444 99999999888 7789999 1111100 0011122346789999999999999
Q ss_pred EEEEEEe
Q psy12695 225 YTCRAKN 231 (369)
Q Consensus 225 Y~C~a~n 231 (369)
|+|.|.|
T Consensus 69 y~C~a~N 75 (75)
T PF13927_consen 69 YTCIASN 75 (75)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999987
No 137
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.51 E-value=8.7e-07 Score=66.21 Aligned_cols=80 Identities=31% Similarity=0.398 Sum_probs=54.0
Q ss_pred eeeccCCeEEEEEEeeCC-CCCeEEEEeCCe-----Eeeeccccc---ccCCcceEEEEeec--ceeeEEEcccCCCCCE
Q psy12695 155 VTAEENENVTLSCRATGS-PVPKIKWIFKEK-----IIANISSGL---ANMNKRQYIIKTIN--SLSNLTIVAVTMSDSG 223 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G 223 (369)
+++.+|++++|.|.+.+. +...+.|++... .+....... ......++.+.... ....|.|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 357899999999999876 667899998543 111111110 01112344443332 5678999999999999
Q ss_pred EEEEEEEeCCc
Q psy12695 224 IYTCRAKNGAG 234 (369)
Q Consensus 224 ~Y~C~a~n~~g 234 (369)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999988765
No 138
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.51 E-value=3.9e-08 Score=79.86 Aligned_cols=92 Identities=29% Similarity=0.390 Sum_probs=31.6
Q ss_pred eEEEecCCCCCccCCCCC---CCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 48 ETVLCKAKNFTTIPEQLD---VGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 48 ~~~~c~~~~l~~ip~~~~---~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
+.++..++.++.|.. +. ..++.|+|++|.|.. ..|.+++.|+.|+|++|+|+.+.......+++|+.|+|++|+|
T Consensus 22 ~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 22 RELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI 100 (175)
T ss_dssp --------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS--
T ss_pred ccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC
Confidence 457778888877753 32 367888888888763 3477788888888888888888654334678888888888888
Q ss_pred ecccCC-cccccCcCccc
Q psy12695 124 QKITHE-AFINVPKLNLE 140 (369)
Q Consensus 124 ~~~~~~-~f~~l~~l~~~ 140 (369)
..+..- .+..+++|...
T Consensus 101 ~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 101 SDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -SCCCCGGGGG-TT--EE
T ss_pred CChHHhHHHHcCCCccee
Confidence 876542 23345554443
No 139
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.49 E-value=7.1e-07 Score=64.93 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeec-------ccccc--cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANI-------SSGLA--NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
|++|+|.|.........|.|++........ ..... ..-..++.+ . ..+.|.|.+++.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~--~-~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI--Y-PNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE--c-CCceEEEccCCchhcEEEEEEEE
Confidence 789999999887666789999966332110 00000 011123322 2 23789999999999999999998
Q ss_pred eCCce-EEEEEEEE
Q psy12695 231 NGAGE-VFTNISLN 243 (369)
Q Consensus 231 n~~g~-~~~~~~l~ 243 (369)
...|. ....+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 77644 44455554
No 140
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.47 E-value=1.1e-06 Score=62.44 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=48.0
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeeccccccc-CCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce--EEE
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLAN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE--VFT 238 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~ 238 (369)
+.|.|.+.| .|.+.|.|++++..+......... .....+ ...+.|.|.....+|.|.|+|.|.|.... ...
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~-----~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~ 76 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRE-----TTVSTLPITPSDHDTGRTFTCRARNEALPTGKET 76 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeE-----EEEEEEEEeCceecCCCEEEEEEcCccCCCCcEE
Confidence 679999987 688899999998766432110000 000111 12356888877778889999999987633 344
Q ss_pred EEEEE
Q psy12695 239 NISLN 243 (369)
Q Consensus 239 ~~~l~ 243 (369)
+++|.
T Consensus 77 s~~l~ 81 (82)
T cd05759 77 SVTLD 81 (82)
T ss_pred EEEEc
Confidence 44443
No 141
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.47 E-value=1.6e-06 Score=69.52 Aligned_cols=96 Identities=25% Similarity=0.284 Sum_probs=67.2
Q ss_pred CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeeccccccc-CC--cceEE-EEeecceeeEEEcccCCCCCEEEEE
Q psy12695 153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLAN-MN--KRQYI-IKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
..++|.+|+++.|.|... +...+.+.|++.++.+......... .+ ..++. +........|+|.+++.+|+|.|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 457789999999999984 6667889999975544322211110 11 12443 4445567899999999999999999
Q ss_pred EEE-eCCc-eEEEEEEEEEeecC
Q psy12695 228 RAK-NGAG-EVFTNISLNVIKVE 248 (369)
Q Consensus 228 ~a~-n~~g-~~~~~~~l~v~~~~ 248 (369)
... -+.| ..+..+-|+|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 974 4556 67778888887654
No 142
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.47 E-value=2.2e-06 Score=63.64 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=55.1
Q ss_pred CeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeecccc-cc-c---CCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSG-LA-N---MNKRQYIIKTINSLSNLTIVAVTMSDSG 223 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G 223 (369)
...+.+|+++.|.|.........+.|++... .+...... .. . .-+.|.. ...+++|.|.+++.+|+|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~---~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET---IYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE---EeCCCcEEEecCCcccCE
Confidence 4457899999999976544444899999632 22221111 00 0 0111222 123579999999999999
Q ss_pred EEEEEEEeCC-ceEEEEEEEE
Q psy12695 224 IYTCRAKNGA-GEVFTNISLN 243 (369)
Q Consensus 224 ~Y~C~a~n~~-g~~~~~~~l~ 243 (369)
.|.|.+.+.. ......+.|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 9999999877 4455555554
No 143
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.46 E-value=1.1e-07 Score=99.25 Aligned_cols=77 Identities=29% Similarity=0.305 Sum_probs=52.5
Q ss_pred CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695 67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143 (369)
Q Consensus 67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~ 143 (369)
.++.|+|++|++. +..|.++++|+.|+|++|++....+..|..+++|+.|+|++|.++...+..|..+++|...++.
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 4666666666654 4566677777777777777776666667777777777777777777666677776666555443
No 144
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.41 E-value=1.4e-06 Score=78.97 Aligned_cols=81 Identities=32% Similarity=0.443 Sum_probs=61.5
Q ss_pred CeeeccCCeEEEEEEe-----eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 154 DVTAEENENVTLSCRA-----TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
...+.+|+.+.+.|.+ .|.|.+.+.|+|++.... +.. .......|.|.++..+|+|.|+|.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-----------~~~---~~~~g~~l~i~~~~~~DsG~Y~C~ 100 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-----------RII---PIDNGSNMLILNPTQSDSGIYICI 100 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-----------eEE---EccCCceEEEcccCcccCeEEEEE
Confidence 3456789999999997 689999999999874211 011 111233588999999999999999
Q ss_pred EEeCCceEEEEEEEEEeecC
Q psy12695 229 AKNGAGEVFTNISLNVIKVE 248 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v~~~~ 248 (369)
+.|..|.....+.|.|....
T Consensus 101 a~N~~g~~~~s~~L~V~~~~ 120 (326)
T PHA02785 101 TKNETYCDMMSLNLTIVSVS 120 (326)
T ss_pred EECCCcceEEEEEEEEEecC
Confidence 99999988888888886543
No 145
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.40 E-value=2.5e-06 Score=64.98 Aligned_cols=83 Identities=29% Similarity=0.363 Sum_probs=55.8
Q ss_pred CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCe--E---eeecccccccCCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695 150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSD 221 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D 221 (369)
+.+..+.+.+|++++|.|...+. ....+.|++... . +...........+.++.+.. ......|.|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 45678889999999999998754 456799998531 1 11111111112234565542 3456789999999999
Q ss_pred CEEEEEEEEeC
Q psy12695 222 SGIYTCRAKNG 232 (369)
Q Consensus 222 ~G~Y~C~a~n~ 232 (369)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999998753
No 146
>KOG0444|consensus
Probab=98.39 E-value=5.3e-08 Score=91.22 Aligned_cols=79 Identities=29% Similarity=0.466 Sum_probs=67.2
Q ss_pred CceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695 46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120 (369)
Q Consensus 46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 120 (369)
..++++.+.|.|+++|..+ ..+.-+|+||+|+|+ ..-|.+|.-|-.||||+|+|..+|+. .+.|..|++|+|++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSN 182 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCC
Confidence 3578999999999999887 467888999999965 56789999999999999999999885 57888999999999
Q ss_pred cceec
Q psy12695 121 NPIQK 125 (369)
Q Consensus 121 N~l~~ 125 (369)
|+|..
T Consensus 183 NPL~h 187 (1255)
T KOG0444|consen 183 NPLNH 187 (1255)
T ss_pred ChhhH
Confidence 98754
No 147
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.39 E-value=2.4e-06 Score=64.66 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCe-----Eee-eccc-c--c--c-cCCcceEEEEeecceeeEEEcccC
Q psy12695 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEK-----IIA-NISS-G--L--A-NMNKRQYIIKTINSLSNLTIVAVT 218 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~-----~~~-~~~~-~--~--~-~~~~~~~~~~~~~~~~~L~I~~v~ 218 (369)
+..+.+.+|+++.|.|... ......+.|++... .+. .... . . . ..++..+..........|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 5678899999999999998 55666899998432 111 0000 0 0 0 111112222222346789999999
Q ss_pred CCCCEEEEEEEEeCC-ceEEEEEEEEE
Q psy12695 219 MSDSGIYTCRAKNGA-GEVFTNISLNV 244 (369)
Q Consensus 219 ~~D~G~Y~C~a~n~~-g~~~~~~~l~v 244 (369)
.+|+|.|.|.+.... ......+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999998873 33444455544
No 148
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.39 E-value=6.8e-06 Score=60.30 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=52.3
Q ss_pred eEEEEEEeeCC-CCC---eEEEEeCCe----Eeeecccc--c-c---cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 162 NVTLSCRATGS-PVP---KIKWIFKEK----IIANISSG--L-A---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 162 ~~~l~C~~~g~-p~p---~i~W~~~~~----~~~~~~~~--~-~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
.++|.|..... |.. .|.|.+... .+.-.... . . ..++..+. ....+..+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence 57899999742 222 599987421 22111110 0 0 11111121 223456789999999999999999
Q ss_pred EEEe-CCceEEEEEEEEE
Q psy12695 228 RAKN-GAGEVFTNISLNV 244 (369)
Q Consensus 228 ~a~n-~~g~~~~~~~l~v 244 (369)
.+.+ +.|..+..+.|.|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 6788888888877
No 149
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.38 E-value=3.5e-06 Score=61.95 Aligned_cols=85 Identities=28% Similarity=0.359 Sum_probs=53.7
Q ss_pred CCeEEEEEEeeCCCCC-eEEEEeCCe----Eeeec-c-cccc---cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695 160 NENVTLSCRATGSPVP-KIKWIFKEK----IIANI-S-SGLA---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p-~i~W~~~~~----~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
|++++|.|........ .|.|++... .+... . .... ....+.+..........|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999987554332 599998532 11111 1 0100 11112222223345678999999999999999998
Q ss_pred E-eCCceEEEEEEEEE
Q psy12695 230 K-NGAGEVFTNISLNV 244 (369)
Q Consensus 230 ~-n~~g~~~~~~~l~v 244 (369)
. .+.|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 45677777788876
No 150
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.38 E-value=1.1e-06 Score=63.74 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=49.1
Q ss_pred CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
...+.+|++|+|.|... .+...+.|+++|........ ........+.|.+++.+|+|.|+|...+.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~------------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP------------PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc------------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 45788999999999885 56678999998864321000 01123567999999999999999999876
No 151
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.35 E-value=7.8e-06 Score=61.18 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=55.5
Q ss_pred CCeEEEEEEeeCCC-------CCeEEEEeCC-----eEe-eec-ccccc---cCCcceEEEEe---ecceeeEEEcccCC
Q psy12695 160 NENVTLSCRATGSP-------VPKIKWIFKE-----KII-ANI-SSGLA---NMNKRQYIIKT---INSLSNLTIVAVTM 219 (369)
Q Consensus 160 G~~~~l~C~~~g~p-------~p~i~W~~~~-----~~~-~~~-~~~~~---~~~~~~~~~~~---~~~~~~L~I~~v~~ 219 (369)
|+++.|.|...-.| .+.|.|.+.. ... ... ..... ..-+.|..+.. ..+...|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999976332 3689999752 111 111 11110 01112322221 12467999999999
Q ss_pred CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 220 SDSGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 220 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
+|+|.|.|.+.......+..+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999776677888887753
No 152
>KOG4222|consensus
Probab=98.34 E-value=1e-06 Score=87.52 Aligned_cols=145 Identities=23% Similarity=0.371 Sum_probs=101.9
Q ss_pred ccCCcccccccccccccccccceecccCC---cccccCcCccccccC--------------------CCCccCCCCCeee
Q psy12695 101 FVPSHILDSILELRELKLSGNPIQKITHE---AFINVPKLNLEDFAC--------------------SPNIRPITPDVTA 157 (369)
Q Consensus 101 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~---~f~~l~~l~~~~~~c--------------------~p~i~~~~~~~~~ 157 (369)
.+|.-...+.+.-+.|+...-++..+-.+ .+.+...-+.+.|.| .|.+...+.++.+
T Consensus 158 ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v 237 (1281)
T KOG4222|consen 158 GHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAV 237 (1281)
T ss_pred CCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccccccee
Confidence 34444455555555555333333322221 233455556666776 4667777889999
Q ss_pred ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
.+|..+.+.|.+.|.|.|.+.|.+.+..+.. .++.+ ..+..+|.|.+++..|+|.|.|.+.|..|...
T Consensus 238 ~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~----------~ry~i--~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~ 305 (1281)
T KOG4222|consen 238 LVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR----------SRYSI--LDDTQTLRIDRVTPTDEGTYVCPAENLVGGLE 305 (1281)
T ss_pred ecccccccccccCCCCCCceeeeccCCCCCc----------cceee--eeccccccccccCCCcccceeeeccccccccc
Confidence 9999999999999999999999996654431 12222 22346899999999999999999999999999
Q ss_pred EEEEEEEeecCCcccCCCCc
Q psy12695 238 TNISLNVIKVETAVAQPDPV 257 (369)
Q Consensus 238 ~~~~l~v~~~~~~~~~~~~~ 257 (369)
+...++|..++.+...+...
T Consensus 306 asa~ltV~apP~f~kkp~dq 325 (1281)
T KOG4222|consen 306 ASATLTVQAPPSFGKKPRDQ 325 (1281)
T ss_pred cccceEEecCcccccccCcc
Confidence 99999999988765554433
No 153
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.33 E-value=3.1e-06 Score=63.08 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=51.9
Q ss_pred eeccCCeEEEEEEeeCCCCCeEEEEeCCeE-------eeecccc-cc-----cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695 156 TAEENENVTLSCRATGSPVPKIKWIFKEKI-------IANISSG-LA-----NMNKRQYIIKTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-------~~~~~~~-~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 222 (369)
.+.+|++++|.|.+.+.....+.|+++... +...... .. .....++.+........|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 467899999999986655567999986521 2111110 10 0113466665555677899999999999
Q ss_pred EEEEEEEEe
Q psy12695 223 GIYTCRAKN 231 (369)
Q Consensus 223 G~Y~C~a~n 231 (369)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 154
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=1.4e-07 Score=76.74 Aligned_cols=87 Identities=30% Similarity=0.312 Sum_probs=23.5
Q ss_pred EecCCCCCccCCCC-CCCccEEEeecceeChh-hcc-CCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695 51 LCKAKNFTTIPEQL-DVGTQVLDLSDNFLDRY-TFR-KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 51 ~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~~~-~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
..+.+.+..+|... +..++.|+|.+|.|+.- .+. .+.+|+.|||++|.|+.|+. |..++.|+.|+|++|+|+.+.
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccc
Confidence 34455566677644 56789999999998742 333 57899999999999999964 788999999999999999997
Q ss_pred CCcccccCcCcc
Q psy12695 128 HEAFINVPKLNL 139 (369)
Q Consensus 128 ~~~f~~l~~l~~ 139 (369)
.+....++.|..
T Consensus 81 ~~l~~~lp~L~~ 92 (175)
T PF14580_consen 81 EGLDKNLPNLQE 92 (175)
T ss_dssp HHHHHH-TT--E
T ss_pred cchHHhCCcCCE
Confidence 543345565544
No 155
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.31 E-value=1.1e-05 Score=56.51 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=55.1
Q ss_pred CeeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 154 DVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
.-.+..|++++|+|.....+.| .|.|..+++..... ...+...|.+..+...|+|+++|.++.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~---------------~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI---------------LNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee---------------ccCCccEEEeceeCcccCCEEEEEEEE
Confidence 4467899999999999654444 89999877553311 112356899999999999999999986
Q ss_pred CCceEEEEEEEEEe
Q psy12695 232 GAGEVFTNISLNVI 245 (369)
Q Consensus 232 ~~g~~~~~~~l~v~ 245 (369)
..-.....+.+.|.
T Consensus 73 ~~k~~~~~~~V~Vl 86 (88)
T cd07694 73 NSSEKTLKLDIKVL 86 (88)
T ss_pred CceEEEEEeeEEEE
Confidence 64444555555553
No 156
>KOG4221|consensus
Probab=98.31 E-value=7.1e-07 Score=89.08 Aligned_cols=135 Identities=22% Similarity=0.437 Sum_probs=98.4
Q ss_pred ccCCcccccccccccccccccceecccCCc--ccccCcCccccccC-------------------CCCccCCCCCeeecc
Q psy12695 101 FVPSHILDSILELRELKLSGNPIQKITHEA--FINVPKLNLEDFAC-------------------SPNIRPITPDVTAEE 159 (369)
Q Consensus 101 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--f~~l~~l~~~~~~c-------------------~p~i~~~~~~~~~~~ 159 (369)
++|.-.+.|+.+-+.+++.+-++..+--+. ..+....+...|+| .|.+...|.++.+.+
T Consensus 263 ~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e 342 (1381)
T KOG4221|consen 263 GVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHE 342 (1381)
T ss_pred CCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeee
Confidence 455556677777777777665554442222 22344445566666 477888889999999
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 239 (369)
+.++.+.|.+.|.|.|.+.|++++..+.. + ..+.+ . ..+.|+|..+-..|.|.|.|.+.|..|...+.
T Consensus 343 ~~die~ec~~~g~p~p~v~w~kNgd~~ip-s--------dy~ki--~-~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 343 SMDIEFECPVSGKPIPTVRWYKNGDRIIP-S--------DYFKI--V-GGGNLRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred ccceeEeCCCCCCCcceEEEEecCcccCc-c--------cceEe--c-CCCCcEEEEEecccchhhhhhhccCcccccch
Confidence 99999999999999999999999977653 1 11211 1 22339999999999999999999999999999
Q ss_pred EEEEEeec
Q psy12695 240 ISLNVIKV 247 (369)
Q Consensus 240 ~~l~v~~~ 247 (369)
+.+.+...
T Consensus 411 a~l~vv~~ 418 (1381)
T KOG4221|consen 411 AQLEVVPQ 418 (1381)
T ss_pred hhheeccC
Confidence 88866544
No 157
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=8.5e-07 Score=87.44 Aligned_cols=58 Identities=31% Similarity=0.402 Sum_probs=28.4
Q ss_pred CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695 67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 124 (369)
.++.|+|++|+|. +..|.++++|+.|||++|+|+...+..|..+++|+.|+|++|.++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 4455555555543 234455555555555555555433344455555555555555444
No 158
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.8e-06 Score=85.18 Aligned_cols=77 Identities=26% Similarity=0.201 Sum_probs=66.5
Q ss_pred CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695 67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143 (369)
Q Consensus 67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~ 143 (369)
.++.|+|++|.+. +..|..|++|+.|+|++|+|+...+..|..+.+|+.|+|++|.|+...+..|.++++|...++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999975 5689999999999999999996556679999999999999999998777888888887776654
No 159
>KOG0618|consensus
Probab=98.29 E-value=6.2e-08 Score=94.40 Aligned_cols=66 Identities=32% Similarity=0.489 Sum_probs=52.0
Q ss_pred EEEeecceeChh---hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCc
Q psy12695 70 VLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK 136 (369)
Q Consensus 70 ~L~l~~n~i~~~---~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~ 136 (369)
.|.|.+|.+... .|.+..+|+.|+|++|+|..+|...+..+..|+.|+|+||+|+.++ .....+..
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~ 431 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGR 431 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhh
Confidence 344444445543 4568899999999999999999999999999999999999999988 44444444
No 160
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.27 E-value=5.6e-06 Score=63.36 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=53.3
Q ss_pred CCCCeeeccCCeEEEEEEeeCCC------CCeEEEEeCCe-----Eeee-ccccc-c-cCCcceEEE--EeecceeeEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATGSP------VPKIKWIFKEK-----IIAN-ISSGL-A-NMNKRQYII--KTINSLSNLTI 214 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p------~p~i~W~~~~~-----~~~~-~~~~~-~-~~~~~~~~~--~~~~~~~~L~I 214 (369)
.|..+.+.+|+.++|.|...... ...+.|+++.. .+.. ..... . ..-+.|+.+ ....+...|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46778999999999999875322 24589998642 1111 11110 0 111235544 23455678999
Q ss_pred cccCCCCCEEEEEEEEeC
Q psy12695 215 VAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 215 ~~v~~~D~G~Y~C~a~n~ 232 (369)
.+++.+|+|+|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988654
No 161
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.27 E-value=6.5e-06 Score=61.71 Aligned_cols=76 Identities=28% Similarity=0.398 Sum_probs=48.6
Q ss_pred eeccCCeEEEEEEeeCCC-CCeEEEEeCCeE---------eeecccccc----cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695 156 TAEENENVTLSCRATGSP-VPKIKWIFKEKI---------IANISSGLA----NMNKRQYIIKT--INSLSNLTIVAVTM 219 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~---------~~~~~~~~~----~~~~~~~~~~~--~~~~~~L~I~~v~~ 219 (369)
.+.+|++++|.|.+.+.. ...+.|+++... +........ .....++.+.. ......|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999987643 457999985431 101111100 01123454422 23346799999999
Q ss_pred CCCEEEEEEEEe
Q psy12695 220 SDSGIYTCRAKN 231 (369)
Q Consensus 220 ~D~G~Y~C~a~n 231 (369)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 162
>KOG0444|consensus
Probab=98.26 E-value=1.5e-07 Score=88.22 Aligned_cols=83 Identities=28% Similarity=0.436 Sum_probs=72.5
Q ss_pred eEEEecCCCCC--ccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695 48 ETVLCKAKNFT--TIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121 (369)
Q Consensus 48 ~~~~c~~~~l~--~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 121 (369)
+.+....|+|+ -||.++. .++++||||+|++. |..+..-+++-.|+||+|+|.+||...|.+|..|-+|||++|
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 34666778887 5898886 57999999999976 566777788999999999999999999999999999999999
Q ss_pred ceecccCCc
Q psy12695 122 PIQKITHEA 130 (369)
Q Consensus 122 ~l~~~~~~~ 130 (369)
+|..+|+..
T Consensus 161 rLe~LPPQ~ 169 (1255)
T KOG0444|consen 161 RLEMLPPQI 169 (1255)
T ss_pred hhhhcCHHH
Confidence 999999853
No 163
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.24 E-value=2.4e-05 Score=58.76 Aligned_cols=39 Identities=33% Similarity=0.578 Sum_probs=35.0
Q ss_pred ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
+...|.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 567899999999999999999999988888888888764
No 164
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.22 E-value=1.1e-06 Score=87.37 Aligned_cols=84 Identities=25% Similarity=0.314 Sum_probs=65.4
Q ss_pred CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccc
Q psy12695 39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL 118 (369)
Q Consensus 39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 118 (369)
|.|... +...++|++++|+.+|..++..++.|+|++|+|..-- ..+++|++|+|++|+|+.||.. .++|+.|+|
T Consensus 196 ~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~L 269 (788)
T PRK15387 196 RACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLPVL----PPGLLELSI 269 (788)
T ss_pred HHHhcC-CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCC-CCCCCCcEEEecCCccCcccCc----ccccceeec
Confidence 455432 3568999999999999999999999999999987421 2468899999999999999752 356777777
Q ss_pred cccceecccC
Q psy12695 119 SGNPIQKITH 128 (369)
Q Consensus 119 ~~N~l~~~~~ 128 (369)
++|.|+.++.
T Consensus 270 s~N~L~~Lp~ 279 (788)
T PRK15387 270 FSNPLTHLPA 279 (788)
T ss_pred cCCchhhhhh
Confidence 7777776653
No 165
>KOG4222|consensus
Probab=98.21 E-value=3e-06 Score=84.28 Aligned_cols=102 Identities=28% Similarity=0.386 Sum_probs=78.8
Q ss_pred cCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 149 RPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 149 ~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
...+..+.+..|+.+.|.|.- .|.|.|.+.|.|++..+.... ...+ ..-..+.|.|.++..+|+|+|.|
T Consensus 135 rv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~------~~~~----~lisgG~LlIsnvrksD~GtY~C 204 (1281)
T KOG4222|consen 135 RVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD------VPII----ALISGGNLLISNVRKSDEGTYAC 204 (1281)
T ss_pred ccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc------ceeE----EEecCCcEEEeccccCCCceeee
Confidence 345667888999999999987 789999999999998765211 1111 11246789999999999999999
Q ss_pred EEEeCCceE-EEEEEEEEeecCCcccCCCCceEe
Q psy12695 228 RAKNGAGEV-FTNISLNVIKVETAVAQPDPVYLV 260 (369)
Q Consensus 228 ~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~ 260 (369)
++.|..|.. +..+.+.|...+.+...+....+.
T Consensus 205 VatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~ 238 (1281)
T KOG4222|consen 205 VATNMVGERESIPARLSVQEKPWFWKRPKDLAVL 238 (1281)
T ss_pred eecccccccccccceeeeccCCccccccccceee
Confidence 999999985 556899999998877666544433
No 166
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.20 E-value=1e-05 Score=59.53 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=51.2
Q ss_pred eeeccCCeEEEEEEeeC-CCCCeEEEEeCCeE----eeecccccccCCcceEEEE--eecceeeEEEcccCCCCCEEEEE
Q psy12695 155 VTAEENENVTLSCRATG-SPVPKIKWIFKEKI----IANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
+.+.+|++++|.|.... .....+.|++.... +.............++.+. ...+...|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999999865 34567999986421 1111111111112344432 22455789999999999999999
Q ss_pred EEEeCC
Q psy12695 228 RAKNGA 233 (369)
Q Consensus 228 ~a~n~~ 233 (369)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987654
No 167
>KOG4579|consensus
Probab=98.19 E-value=1.4e-07 Score=71.64 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=71.8
Q ss_pred ceEEEecCCCCCccCCCC---CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 121 (369)
.+.++.++|+++.+|..+ |+.++.|+|++|.|. |..|..++.|+.|+++.|.|...|.-.|. |.+|-.|+..+|
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCCCC
Confidence 456888999999999765 668899999999977 45699999999999999999988775554 889999999999
Q ss_pred ceecccCCccc
Q psy12695 122 PIQKITHEAFI 132 (369)
Q Consensus 122 ~l~~~~~~~f~ 132 (369)
.+..|+-+.|.
T Consensus 134 a~~eid~dl~~ 144 (177)
T KOG4579|consen 134 ARAEIDVDLFY 144 (177)
T ss_pred ccccCcHHHhc
Confidence 99988877654
No 168
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.19 E-value=1.7e-06 Score=86.23 Aligned_cols=87 Identities=23% Similarity=0.209 Sum_probs=63.6
Q ss_pred ceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695 47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 126 (369)
.+.+++++++|+.+|..+|..++.|+|++|+|..-.-.-..+|+.|+|++|+|+.||...+ .+|+.|+|++|.|..+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITEL 256 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcC
Confidence 4678899999999999999999999999999763211122578888888888888876432 3577777777777777
Q ss_pred cCCcccccCc
Q psy12695 127 THEAFINVPK 136 (369)
Q Consensus 127 ~~~~f~~l~~ 136 (369)
+...+.+|..
T Consensus 257 P~~l~s~L~~ 266 (754)
T PRK15370 257 PERLPSALQS 266 (754)
T ss_pred ChhHhCCCCE
Confidence 6554444433
No 169
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.19 E-value=2.6e-05 Score=56.74 Aligned_cols=84 Identities=21% Similarity=0.317 Sum_probs=52.8
Q ss_pred CeEEEEEEeeCCC-CCeEEEEeCCe----Eeeeccc--c-ccc-CCcceEEE-EeecceeeEEEcccCCCCCEEEEEEE-
Q psy12695 161 ENVTLSCRATGSP-VPKIKWIFKEK----IIANISS--G-LAN-MNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCRA- 229 (369)
Q Consensus 161 ~~~~l~C~~~g~p-~p~i~W~~~~~----~~~~~~~--~-~~~-~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a- 229 (369)
++++|.|.....+ ...|.|.+... .+..... + ... .-..|... .......+|.|.+++.+|+|.|.|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4688999986433 34699987431 2221111 0 000 00112211 23345679999999999999999997
Q ss_pred EeCCceEEEEEEEEE
Q psy12695 230 KNGAGEVFTNISLNV 244 (369)
Q Consensus 230 ~n~~g~~~~~~~l~v 244 (369)
..+.|+..+...|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 557788888888877
No 170
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.8e-06 Score=52.85 Aligned_cols=38 Identities=34% Similarity=0.386 Sum_probs=31.3
Q ss_pred CccEEEeecceeC--hhhccCCcccCeeeccCCcccccCC
Q psy12695 67 GTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPS 104 (369)
Q Consensus 67 ~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~ 104 (369)
++++|+|++|+|. +..|.+|++|+.|+|++|+|+.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 5789999999987 3458999999999999999998754
No 171
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.15 E-value=2.2e-06 Score=89.72 Aligned_cols=66 Identities=24% Similarity=0.229 Sum_probs=38.2
Q ss_pred CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCccc
Q psy12695 67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132 (369)
Q Consensus 67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~ 132 (369)
.+++|+|++|.+. +..|.++++|+.|+|++|.+....+..|..+.+|+.|+|++|.+....+..|.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 3444444444432 34566677777777777776655555666666666666666665543333333
No 172
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=98.14 E-value=1.8e-06 Score=47.03 Aligned_cols=28 Identities=36% Similarity=0.897 Sum_probs=22.8
Q ss_pred CCCCCCeecccCCceEEEecCCCCCccCCCCC
Q psy12695 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLD 65 (369)
Q Consensus 34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~ 65 (369)
.||..|.|. ...|+|++.+|++||.+||
T Consensus 1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence 599999999 5689999999999999886
No 173
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.13 E-value=1.6e-06 Score=86.37 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=44.4
Q ss_pred ceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695 47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 126 (369)
...+++++|+|+.+|..++.+++.|+|++|+|..-.-.-..+|+.|+|++|+|..||...+ .+|+.|+|++|.|+.+
T Consensus 201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~L 277 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP---SALQSLDLFHNKISCL 277 (754)
T ss_pred CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh---CCCCEEECcCCccCcc
Confidence 4456667777777776666667777777666542110011245555666665555554322 2455555555555555
Q ss_pred cCCcc
Q psy12695 127 THEAF 131 (369)
Q Consensus 127 ~~~~f 131 (369)
+...+
T Consensus 278 P~~l~ 282 (754)
T PRK15370 278 PENLP 282 (754)
T ss_pred ccccC
Confidence 44333
No 174
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=98.12 E-value=3.4e-06 Score=48.08 Aligned_cols=32 Identities=31% Similarity=0.787 Sum_probs=28.3
Q ss_pred CCCCCCeecccCCceEEEecCCCCCccCCCCCCCcc
Q psy12695 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQ 69 (369)
Q Consensus 34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~ 69 (369)
.||..|.|. ...|+|++.+|+.||.+||.+++
T Consensus 1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~t~ 32 (33)
T smart00013 1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPDTT 32 (33)
T ss_pred CcCCCCEEC----CCEeEeCCCCcCccCCCCCcccc
Confidence 499999998 46899999999999999997754
No 175
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.04 E-value=4.6e-05 Score=53.98 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=41.8
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
+.|.|.+.| .|.+.|.|++++..+..............|.+ .+.|.+......+.+.|.|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~-----~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTV-----TSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEE-----EEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 579999966 58889999999987653221111111112222 345666444455556999999887643
No 176
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.02 E-value=5.2e-05 Score=57.75 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=53.0
Q ss_pred CCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCCe--E---eeeccc--cc---ccCCcceEEEEeec--ceeeEEEcc
Q psy12695 151 ITPDVTAEENENVTLSCRATGSP--VPKIKWIFKEK--I---IANISS--GL---ANMNKRQYIIKTIN--SLSNLTIVA 216 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~~--~---~~~~~~--~~---~~~~~~~~~~~~~~--~~~~L~I~~ 216 (369)
.|..+.+.+|++++|.|...+.. ...+.||++.. . +..... .. ......+|.+.... ....|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45678899999999999886543 45699998542 1 111110 00 01112356554333 345799999
Q ss_pred cCCCCCEEEEEEEEe
Q psy12695 217 VTMSDSGIYTCRAKN 231 (369)
Q Consensus 217 v~~~D~G~Y~C~a~n 231 (369)
++.+|+|+|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998865
No 177
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.02 E-value=2.7e-05 Score=56.87 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=49.0
Q ss_pred ccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 158 EENENVTLSCRATGS-PV-PKIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..|+.++|.|.+.|. |. ..|+|++++..+..... .........|.+ .+.|.+......|.|.|.|.|.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~-----~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV-----SSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE-----EEEEEECHHHhCCCCCEEEEEEeCC
Confidence 478999999999997 53 57999999877653321 111122222222 4567776666679999999998876
Q ss_pred c
Q psy12695 234 G 234 (369)
Q Consensus 234 g 234 (369)
.
T Consensus 86 ~ 86 (95)
T cd00098 86 L 86 (95)
T ss_pred C
Confidence 4
No 178
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.96 E-value=0.00012 Score=51.27 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=47.5
Q ss_pred EEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc-eEEEEE
Q psy12695 163 VTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG-EVFTNI 240 (369)
Q Consensus 163 ~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~~~~ 240 (369)
+.|.|.+. +.|.+.|+|++++..+...... .......+ ...+.|.+..-..+|...|.|.|.|..- ......
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~-----t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~ 75 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMF-----TVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQR 75 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCc-----EEEEEEEEECchhhCCCEEEEEEcCcccCCceeeE
Confidence 67999995 5788899999999877542110 00011111 1245777754444445589999988652 245556
Q ss_pred EEEEee
Q psy12695 241 SLNVIK 246 (369)
Q Consensus 241 ~l~v~~ 246 (369)
.|.|..
T Consensus 76 ~L~V~y 81 (82)
T cd05883 76 YLEVQY 81 (82)
T ss_pred EEEEEE
Confidence 666653
No 179
>KOG0618|consensus
Probab=97.96 E-value=1.2e-06 Score=85.73 Aligned_cols=94 Identities=27% Similarity=0.416 Sum_probs=77.4
Q ss_pred eEEEecCCCCC--ccCCCC-CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695 48 ETVLCKAKNFT--TIPEQL-DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121 (369)
Q Consensus 48 ~~~~c~~~~l~--~ip~~~-~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 121 (369)
..+.|.+|.|+ -+|.-. ...+++|+|++|+|. ...|.+++.|++|+||+|+|+.|| .....+..|++|...+|
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCC
Confidence 45888999998 356422 467999999999855 667889999999999999999998 56788899999999999
Q ss_pred ceecccCCcccccCcCccccccC
Q psy12695 122 PIQKITHEAFINVPKLNLEDFAC 144 (369)
Q Consensus 122 ~l~~~~~~~f~~l~~l~~~~~~c 144 (369)
.|..+| -+..+++|...|+.|
T Consensus 441 ~l~~fP--e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 441 QLLSFP--ELAQLPQLKVLDLSC 461 (1081)
T ss_pred ceeech--hhhhcCcceEEeccc
Confidence 999998 577777777766666
No 180
>KOG0617|consensus
Probab=97.94 E-value=1.4e-06 Score=68.80 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=73.8
Q ss_pred ceEEEecCCCCCccCCCCC--CCccEEEeecce--eChhhccCCcccCeeeccCCcccc-cCCccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQF-VPSHILDSILELRELKLSGN 121 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N 121 (369)
...+...+|++.++|..+. .-++.|+++-|+ +-+.-|..++.|+.|||++|++++ .-++-|-.+..|+.|+|++|
T Consensus 58 levln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 58 LEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 4568889999999998885 358899999999 458899999999999999999986 22445778999999999999
Q ss_pred ceecccCCcccccCcC
Q psy12695 122 PIQKITHEAFINVPKL 137 (369)
Q Consensus 122 ~l~~~~~~~f~~l~~l 137 (369)
.+..++++. ..+.+|
T Consensus 138 dfe~lp~dv-g~lt~l 152 (264)
T KOG0617|consen 138 DFEILPPDV-GKLTNL 152 (264)
T ss_pred CcccCChhh-hhhcce
Confidence 999998753 444443
No 181
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.94 E-value=4.5e-05 Score=55.59 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
....+..|++|+|.|+... ....+.|++++.......... .. .......+.|..++.+|+|.|.|...
T Consensus 8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~--~~-------~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE--KH-------HGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc--cc-------CCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4567889999999998865 455799999885422100000 00 01124478999999999999999974
No 182
>KOG0472|consensus
Probab=97.90 E-value=4.2e-06 Score=74.78 Aligned_cols=77 Identities=32% Similarity=0.493 Sum_probs=47.8
Q ss_pred ceEEEecCCCCCccCCCCC--CCccEEEeeccee--------------------------ChhhccCCcccCeeeccCCc
Q psy12695 47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFL--------------------------DRYTFRKLINLVELDLSYNQ 98 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i--------------------------~~~~f~~l~~L~~L~Ls~N~ 98 (369)
.+-++.++|-|..+|..+. ..++.|+|++|++ .+.-..+|.+|..|||.+|.
T Consensus 437 Lt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 437 LTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred ceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 3457777777888997663 4589999999982 22334455555555555555
Q ss_pred ccccCCccccccccccccccccccee
Q psy12695 99 IQFVPSHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 99 l~~i~~~~f~~l~~L~~L~L~~N~l~ 124 (369)
|..||+. ++++.+|+.|+|.||++.
T Consensus 517 lq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhCChh-hccccceeEEEecCCccC
Confidence 5555553 455555555555555554
No 183
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.87 E-value=0.0002 Score=52.09 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=48.4
Q ss_pred CeEEEEEEeeC-CCCCeEEEEeCCe----Eeeeccc---cccc-CCcceEEE-EeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 161 ENVTLSCRATG-SPVPKIKWIFKEK----IIANISS---GLAN-MNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 161 ~~~~l~C~~~g-~p~p~i~W~~~~~----~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
+.++|.|.... .....+.|.+... .+...+. .... .-..|... ........|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46789998853 2345688988532 2221111 1110 00112211 112246789999999999999999985
Q ss_pred e-CCceEEEEEEE
Q psy12695 231 N-GAGEVFTNISL 242 (369)
Q Consensus 231 n-~~g~~~~~~~l 242 (369)
. +.|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 56777766554
No 184
>PHA03376 BARF1; Provisional
Probab=97.85 E-value=0.00022 Score=57.15 Aligned_cols=85 Identities=26% Similarity=0.259 Sum_probs=54.4
Q ss_pred CeeeccCCeEEEEEEee---CCCCCeEEEEeC----CeEeeecccccc----cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695 154 DVTAEENENVTLSCRAT---GSPVPKIKWIFK----EKIIANISSGLA----NMNKRQYIIKTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~---g~p~p~i~W~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 222 (369)
.+.+..|+.+.|+|... ..+.-.|.|++. ...+........ ...+.++.+....++-.|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 46678999999999875 234456999994 332222111111 1122233333334677899999999999
Q ss_pred EEEEEEEEeCCceEEE
Q psy12695 223 GIYTCRAKNGAGEVFT 238 (369)
Q Consensus 223 G~Y~C~a~n~~g~~~~ 238 (369)
|+|.|...........
T Consensus 100 GtY~C~fQkge~~~~k 115 (221)
T PHA03376 100 GNYLCRMKLGETEVTK 115 (221)
T ss_pred ceEEEEEEcCCCceee
Confidence 9999999765544433
No 185
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.79 E-value=9.1e-06 Score=80.86 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCccccc
Q psy12695 66 VGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142 (369)
Q Consensus 66 ~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~ 142 (369)
.+++.|+|++|+|..-. ...++|+.|+|++|+|+.||.. ..+|+.|+|++|.|+.+|. .|.+++.+...++
T Consensus 382 ~~L~~LdLs~N~Lt~LP-~l~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccCCC-CcccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccCh-HHhhccCCCeEEC
Confidence 45666666666655211 1235688889999998888752 3468889999999998875 4556666554443
No 186
>KOG0472|consensus
Probab=97.79 E-value=9.8e-07 Score=78.68 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=52.4
Q ss_pred ceEEEecCCCCCccCCCCC--CCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
.+.++|..|-|..+|+.+- ..+..|+|..|+|. --.|.+.+.|++|.++.|+|..+|+....+|++|..|||.+|++
T Consensus 185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 4578888888888888763 45667777888754 12555555555555555555555555555555555555555555
Q ss_pred ecccCC
Q psy12695 124 QKITHE 129 (369)
Q Consensus 124 ~~~~~~ 129 (369)
+.+|.+
T Consensus 265 ke~Pde 270 (565)
T KOG0472|consen 265 KEVPDE 270 (565)
T ss_pred ccCchH
Confidence 555544
No 187
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.77 E-value=6.2e-05 Score=52.94 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=42.3
Q ss_pred eEEEEEEeeCCCCC--eEEEEeCCe-----Eeeecc--ccccc--CCcceEEEEee--cceeeEEEcccCCCCCEEEEEE
Q psy12695 162 NVTLSCRATGSPVP--KIKWIFKEK-----IIANIS--SGLAN--MNKRQYIIKTI--NSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 162 ~~~l~C~~~g~p~p--~i~W~~~~~-----~~~~~~--~~~~~--~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
++.|.|.+.....+ .+.|++... .+.... ..... ....++.+... .+...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36899998765554 799998542 111111 11111 12234444333 5567899999999999999996
Q ss_pred E
Q psy12695 229 A 229 (369)
Q Consensus 229 a 229 (369)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 188
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.74 E-value=0.00021 Score=50.65 Aligned_cols=67 Identities=16% Similarity=0.384 Sum_probs=41.3
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCc-ceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNK-RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
+.|.|.+.| .|.+.|+|++++..+..........+. ..|.+ .+.|.+......|...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~-----~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTV-----SSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEE-----EEEEEEEecchhCCCEEEEEEECccc
Confidence 679999977 588899999999776432111110111 12211 34566645555566799999988763
No 189
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.74 E-value=0.00016 Score=48.55 Aligned_cols=67 Identities=42% Similarity=0.601 Sum_probs=45.3
Q ss_pred EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
+.|.|.+.+.+...+.|++++.......... .............|.|.+++..|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTR-----VRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEE-----eccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 3689999887778899999876543211100 000011123456799999999999999999987763
No 190
>KOG1259|consensus
Probab=97.70 E-value=7.3e-06 Score=70.58 Aligned_cols=79 Identities=24% Similarity=0.194 Sum_probs=51.1
Q ss_pred eEEEecCCCCCccCCCC--CCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695 48 ETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 48 ~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 124 (369)
+.++.+.|.++.|-.+. -+.++.|+||+|.|. -+.++.|++|+.||||+|.|+.+.. .-..|.+.+.|.|++|.|.
T Consensus 287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHh
Confidence 45666777776665433 456777777777754 3446777777777777777776632 3345667777777777666
Q ss_pred ccc
Q psy12695 125 KIT 127 (369)
Q Consensus 125 ~~~ 127 (369)
.+.
T Consensus 366 ~LS 368 (490)
T KOG1259|consen 366 TLS 368 (490)
T ss_pred hhh
Confidence 554
No 191
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.61 E-value=0.00028 Score=50.76 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=43.3
Q ss_pred CCeEEEEEEe-eCCCCCeEEEEeCCeEeeeccc-ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695 160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
|+.+.+.|.+ .|.|.|.|.|+.++........ .........+. ..+.|.+..-...+...+.|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFT-----VSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEE-----EEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcce-----EEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999977 6799999999999877611100 00001111111 1345666554444566899999987644
No 192
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.59 E-value=0.00054 Score=48.53 Aligned_cols=66 Identities=21% Similarity=0.474 Sum_probs=40.7
Q ss_pred EEEEEEeeC-CCCCeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
++|.|.+.| .|...|+|++++..+........ ......|. ..+.|.+..-...+...|.|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~-----~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFT-----VSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEE-----EEEEEEEEcccccCCCEEEEEEechh
Confidence 679999976 77778999999987643221111 11111222 24466665444445558999998765
No 193
>KOG1644|consensus
Probab=97.53 E-value=3.8e-05 Score=62.49 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=54.7
Q ss_pred CccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695 67 GTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 67 ~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
....+||++|+|- -..|.+++.|..|+|++|+|+.|.++.-.-+++|..|.|.+|+|..+.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 4678999999965 578999999999999999999999988788889999999999998875
No 194
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.51 E-value=0.00066 Score=53.44 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=48.0
Q ss_pred CCCccCCCCCeeeccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeee--c--ccc----cccCCcceEEEEeecceeeEEE
Q psy12695 145 SPNIRPITPDVTAEENENVTLSCRATGS-PV-PKIKWIFKEKIIAN--I--SSG----LANMNKRQYIIKTINSLSNLTI 214 (369)
Q Consensus 145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~--~--~~~----~~~~~~~~~~~~~~~~~~~L~I 214 (369)
.|.+...+......+|+.+.|.|.+.|. |. +.|.|++++..... . ... ........|.+ .+.|.+
T Consensus 38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~-----~s~L~v 112 (139)
T cd05771 38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL-----SSHLTL 112 (139)
T ss_pred CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEE-----EEEEEe
Confidence 3444434444444578999999999986 43 37999998753211 0 000 00011122222 456777
Q ss_pred cccCCCCCEEEEEEEEeCC
Q psy12695 215 VAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 215 ~~v~~~D~G~Y~C~a~n~~ 233 (369)
..-...+.+.|.|.+.+..
T Consensus 113 ~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 113 EPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred cCCccCCCCEEEEEEEcCC
Confidence 6555455669999997654
No 195
>KOG1859|consensus
Probab=97.50 E-value=6.6e-06 Score=78.76 Aligned_cols=80 Identities=28% Similarity=0.356 Sum_probs=64.1
Q ss_pred ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
...++|+.|.|..+-..+ -+.++.|+|++|++.. .....+++|+.|||++|.|+.+|.-.-.+.. |..|.|.||.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 457889999998776654 4679999999999774 4666899999999999999999886655653 88888888877
Q ss_pred eccc
Q psy12695 124 QKIT 127 (369)
Q Consensus 124 ~~~~ 127 (369)
+++.
T Consensus 245 ~tL~ 248 (1096)
T KOG1859|consen 245 TTLR 248 (1096)
T ss_pred Hhhh
Confidence 7653
No 196
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.50 E-value=0.001 Score=48.62 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=48.4
Q ss_pred CCeeeccCCeEEEEEEeeC-CCCCe--EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEE
Q psy12695 153 PDVTAEENENVTLSCRATG-SPVPK--IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCR 228 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~ 228 (369)
....+.+|+.++|.|.+.| .|.+. |.||+++..+........ ... .......+.+. +..+|.| .|.|.
T Consensus 9 ~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--~~~-----~~~~~stlt~~-~~r~D~g~~~sC~ 80 (100)
T cd05755 9 LPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--TKS-----PVNAPATITIT-VDREDHGANFSCE 80 (100)
T ss_pred CCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--cCC-----CceeEEEEEEe-cchhhCCcEEEEE
Confidence 3445689999999999965 67776 799999987754221100 000 11123456664 4566666 89999
Q ss_pred EEeCCce
Q psy12695 229 AKNGAGE 235 (369)
Q Consensus 229 a~n~~g~ 235 (369)
|.+..+.
T Consensus 81 A~l~l~~ 87 (100)
T cd05755 81 TELDLRP 87 (100)
T ss_pred EEeccCc
Confidence 9987654
No 197
>KOG1259|consensus
Probab=97.47 E-value=2.7e-05 Score=67.13 Aligned_cols=58 Identities=33% Similarity=0.385 Sum_probs=48.8
Q ss_pred ccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695 68 TQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 68 ~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
++.||||+|.|. ..+..-++.++.|+||+|.|..+.. +..|++|..|||++|.++.+.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh
Confidence 578999999987 3456678999999999999999866 567899999999999988764
No 198
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.45 E-value=6e-05 Score=38.51 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=16.3
Q ss_pred ccCeeeccCCcccccCCcccccc
Q psy12695 88 NLVELDLSYNQIQFVPSHILDSI 110 (369)
Q Consensus 88 ~L~~L~Ls~N~l~~i~~~~f~~l 110 (369)
+|++|||++|+|+.||+. |.+|
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 478888888888888776 6643
No 199
>KOG0532|consensus
Probab=97.43 E-value=3.9e-05 Score=71.70 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=51.7
Q ss_pred CCCeecccCCceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccc
Q psy12695 37 STCECKWKGGKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112 (369)
Q Consensus 37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 112 (369)
.-|.|. .+.+-.++|+++.+|..+- ..+..||.+.|+|. +....+|.+|+.|.+..|++..+|+..- .| .
T Consensus 139 ~lC~lp----Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L-p 212 (722)
T KOG0532|consen 139 GLCDLP----LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL-P 212 (722)
T ss_pred hhhcCc----ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC-c
Confidence 346665 4556666777777776552 34556677777643 3334445555554444444444444322 33 2
Q ss_pred cccccccccceecccCCcccccCcCccccccC
Q psy12695 113 LRELKLSGNPIQKITHEAFINVPKLNLEDFAC 144 (369)
Q Consensus 113 L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~c 144 (369)
|..||++.|+|+.|+- -|..+..|....+.|
T Consensus 213 Li~lDfScNkis~iPv-~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPV-DFRKMRHLQVLQLEN 243 (722)
T ss_pred eeeeecccCceeecch-hhhhhhhheeeeecc
Confidence 4555555555555542 344444444444433
No 200
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.34 E-value=9.7e-05 Score=69.17 Aligned_cols=92 Identities=33% Similarity=0.488 Sum_probs=74.7
Q ss_pred ceEEEecCCCCCccCCCC--CC-CccEEEeecceeChh--hccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQL--DV-GTQVLDLSDNFLDRY--TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~--~~-~~~~L~l~~n~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 121 (369)
...+.+.+++++.+|... .. +++.|++++|+|... ....+++|+.|++++|+|+.+++.. ..++.|+.|++++|
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N 196 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGN 196 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhheeccCC
Confidence 567889999999998755 32 799999999999864 8899999999999999999998853 26789999999999
Q ss_pred ceecccCC--cccccCcCcc
Q psy12695 122 PIQKITHE--AFINVPKLNL 139 (369)
Q Consensus 122 ~l~~~~~~--~f~~l~~l~~ 139 (369)
.++.++.. .-..+..+..
T Consensus 197 ~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 197 KISDLPPEIELLSALEELDL 216 (394)
T ss_pred ccccCchhhhhhhhhhhhhh
Confidence 99999875 2333444433
No 201
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=97.31 E-value=0.00012 Score=39.16 Aligned_cols=23 Identities=48% Similarity=0.602 Sum_probs=19.7
Q ss_pred CcccCeeeccCCcccccCCcccc
Q psy12695 86 LINLVELDLSYNQIQFVPSHILD 108 (369)
Q Consensus 86 l~~L~~L~Ls~N~l~~i~~~~f~ 108 (369)
|++|+.|+|++|+|+.||+++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 56789999999999999988886
No 202
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=97.31 E-value=0.00012 Score=39.16 Aligned_cols=23 Identities=48% Similarity=0.602 Sum_probs=19.7
Q ss_pred CcccCeeeccCCcccccCCcccc
Q psy12695 86 LINLVELDLSYNQIQFVPSHILD 108 (369)
Q Consensus 86 l~~L~~L~Ls~N~l~~i~~~~f~ 108 (369)
|++|+.|+|++|+|+.||+++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 56789999999999999988886
No 203
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.21 E-value=0.00022 Score=56.15 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=35.8
Q ss_pred eEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250 (369)
Q Consensus 211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 250 (369)
.|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence 5899999999999999999999899999999999876644
No 204
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.18 E-value=0.0045 Score=46.09 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEe---ee---cccccccCCcceE--EEEeecceeeEEEcccCC
Q psy12695 151 ITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKII---AN---ISSGLANMNKRQY--IIKTINSLSNLTIVAVTM 219 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~---~~---~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~ 219 (369)
.+....+..|+.++|.|.++|.... .+.|+++.... .. .........+.++ ..+...+.-.|.|.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 3456778899999999999775544 48899853221 11 0111111123333 333445566899999999
Q ss_pred CCCEEEEEEEE
Q psy12695 220 SDSGIYTCRAK 230 (369)
Q Consensus 220 ~D~G~Y~C~a~ 230 (369)
+|.+.|.|...
T Consensus 84 ~DTa~Y~Ca~e 94 (115)
T cd05721 84 NQTDIYFCKIE 94 (115)
T ss_pred HHCeEEEEEee
Confidence 99999999753
No 205
>KOG0532|consensus
Probab=97.17 E-value=7e-05 Score=70.03 Aligned_cols=105 Identities=28% Similarity=0.430 Sum_probs=82.8
Q ss_pred CCCeecccCCceEEEecCCCCCccCCCCC-CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccc
Q psy12695 37 STCECKWKGGKETVLCKAKNFTTIPEQLD-VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113 (369)
Q Consensus 37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~-~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 113 (369)
+.|.|... ..+.++.+.|.+..+|..+. --++.|.+++|++. +.....+..|..||.+.|+|..++.. ..+|.+|
T Consensus 114 p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~sl 191 (722)
T KOG0532|consen 114 PEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSL 191 (722)
T ss_pred chhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHH
Confidence 34566533 25678899999999998774 45899999999966 44556889999999999999999884 6899999
Q ss_pred ccccccccceecccCCcccccCcCccccccCC
Q psy12695 114 RELKLSGNPIQKITHEAFINVPKLNLEDFACS 145 (369)
Q Consensus 114 ~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~c~ 145 (369)
+.|.+..|.+..+++..- .|+ |...||.|.
T Consensus 192 r~l~vrRn~l~~lp~El~-~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPEELC-SLP-LIRLDFSCN 221 (722)
T ss_pred HHHHHhhhhhhhCCHHHh-CCc-eeeeecccC
Confidence 999999999999987654 443 445667774
No 206
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.10 E-value=0.0057 Score=45.89 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=44.0
Q ss_pred eeeccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeecccccccCCc-ceEEEEeecceeeEEEcccCCCCCE-EEEEEEE
Q psy12695 155 VTAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISSGLANMNK-RQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAK 230 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~ 230 (369)
.....|+.++|.|.+.|.-+ ..++|+++|..+..........+. ..|.. .+.|.+.. ...|.| .|.|.+.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~-----~S~L~~~~-~~~d~~~~ytC~V~ 89 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNV-----TSTVQVKL-TEDDVHSQVTCEVQ 89 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEE-----EEEEEEEC-ccccccCceEEEEE
Confidence 34457888999999988444 378999999886532211111111 12322 34565543 444444 5999998
Q ss_pred eCC
Q psy12695 231 NGA 233 (369)
Q Consensus 231 n~~ 233 (369)
...
T Consensus 90 H~~ 92 (111)
T cd05772 90 HRT 92 (111)
T ss_pred eCC
Confidence 764
No 207
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.03 E-value=0.0016 Score=69.30 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=60.6
Q ss_pred ceEEEecCCCCCccCCCC-CCCccEEEeecceeC--hhhccCCcccCeeeccCCc-ccccCCcccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQL-DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKLSGNP 122 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~ 122 (369)
.+.+...++.++.+|..+ +.+++.|+|++|+|. +..+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC
Confidence 455677777788888766 678889999998876 3456778888888888754 666654 5667778888887753
Q ss_pred -eecccCCcccccCcCc
Q psy12695 123 -IQKITHEAFINVPKLN 138 (369)
Q Consensus 123 -l~~~~~~~f~~l~~l~ 138 (369)
+..++ ..+.++.+|.
T Consensus 669 ~L~~lp-~si~~L~~L~ 684 (1153)
T PLN03210 669 SLVELP-SSIQYLNKLE 684 (1153)
T ss_pred Cccccc-hhhhccCCCC
Confidence 44443 2344444433
No 208
>PHA02633 hypothetical protein; Provisional
Probab=97.01 E-value=0.0024 Score=41.23 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=35.0
Q ss_pred ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 248 (369)
....|.|.++..+|+|.|.|+..|..-....++.++|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 35679999999999999999999988778888888887654
No 209
>KOG0531|consensus
Probab=97.00 E-value=0.00026 Score=66.70 Aligned_cols=80 Identities=35% Similarity=0.320 Sum_probs=58.6
Q ss_pred ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
...++..+|.++.+...+ -.++++|+|++|+|.. ..+..++.|+.|++++|.|+.+.. |..+..|+.++|++|++
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcchh
Confidence 456777788888776633 3578888888888764 345666668888888888887754 55577888888888888
Q ss_pred ecccC
Q psy12695 124 QKITH 128 (369)
Q Consensus 124 ~~~~~ 128 (369)
..+..
T Consensus 175 ~~ie~ 179 (414)
T KOG0531|consen 175 VDIEN 179 (414)
T ss_pred hhhhh
Confidence 88776
No 210
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.98 E-value=0.0046 Score=44.84 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc-cccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 160 NENVTLSCRATGSPVP--KIKWIFKEKIIANIS-SGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
|+.++|.|.+.|..++ .+.|++++....... .... ..+...|.. .+.|.+ ...+.+.|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~-----~s~l~v---~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQL-----WVTLEV---PPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEE-----EEEEEE---CCCCCCEEEEEEEeCC
Confidence 7789999999995444 789999986322111 1111 111112221 234444 3447789999997754
No 211
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.96 E-value=0.0076 Score=41.67 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=39.3
Q ss_pred EEEEEEeeCC-CC-CeEEEEeCCeEeeeccc-ccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 163 VTLSCRATGS-PV-PKIKWIFKEKIIANISS-GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 163 ~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
++|.|.+.|. |. ..+.|++++..+..... ... ..+...|.. .+.|.+......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~-----~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFL-----SSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEE-----EEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999985 44 47999999875332111 000 011222222 4556665555566679999997653
No 212
>KOG4579|consensus
Probab=96.89 E-value=0.00012 Score=55.96 Aligned_cols=91 Identities=26% Similarity=0.304 Sum_probs=65.6
Q ss_pred EEEecCCCCCccCC---CCCC--CccEEEeecceeC--hhhcc-CCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695 49 TVLCKAKNFTTIPE---QLDV--GTQVLDLSDNFLD--RYTFR-KLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120 (369)
Q Consensus 49 ~~~c~~~~l~~ip~---~~~~--~~~~L~l~~n~i~--~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 120 (369)
.++.++..|-.+++ .+.. .++..+|++|.+. +..|. ..+.++.|+|++|+|+.+|.. |..++.|+.|+++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccccc
Confidence 34444555554543 2322 4667899999976 44555 556899999999999999997 99999999999999
Q ss_pred cceecccCCcccccCcCcccc
Q psy12695 121 NPIQKITHEAFINVPKLNLED 141 (369)
Q Consensus 121 N~l~~~~~~~f~~l~~l~~~~ 141 (369)
|+|...+.-.| .|.+++..+
T Consensus 110 N~l~~~p~vi~-~L~~l~~Ld 129 (177)
T KOG4579|consen 110 NPLNAEPRVIA-PLIKLDMLD 129 (177)
T ss_pred CccccchHHHH-HHHhHHHhc
Confidence 99998875433 365554433
No 213
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.82 E-value=0.00061 Score=32.22 Aligned_cols=17 Identities=47% Similarity=0.614 Sum_probs=9.7
Q ss_pred cccCeeeccCCcccccC
Q psy12695 87 INLVELDLSYNQIQFVP 103 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~i~ 103 (369)
++|+.|+|++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36788888888877664
No 214
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.82 E-value=0.011 Score=42.94 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEeCCc
Q psy12695 160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKNGAG 234 (369)
Q Consensus 160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 234 (369)
.....+.|.+ .|.|.+.|.|+++........ ........+.+ .+.|.+.. +.+|.| .|+|.+.+..-
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~--~~~~~~g~~tv-----~S~l~~~p-~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQ--SKENPNGTVTV-----TSEYRLVP-SREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeE--eecCCCCCEEE-----EEEEEEec-CHHHCCCEEEEEEeCccc
Confidence 3456789999 689999999998621110000 00001111211 34566644 444555 89999988763
No 215
>KOG1644|consensus
Probab=96.74 E-value=0.002 Score=52.75 Aligned_cols=96 Identities=25% Similarity=0.250 Sum_probs=71.9
Q ss_pred ceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCC-cccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSG 120 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~ 120 (369)
...++.++|.+..++. + +..+.+|.|++|+|. +.--.-+++|+.|.|.+|.|..+.. +-...+++|+.|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3568889999887765 3 468999999999954 5555567889999999999887432 2245788999999999
Q ss_pred cceecccC---CcccccCcCcccccc
Q psy12695 121 NPIQKITH---EAFINVPKLNLEDFA 143 (369)
Q Consensus 121 N~l~~~~~---~~f~~l~~l~~~~~~ 143 (369)
|++..-.. .+.-.+++|...||+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 99876543 234466777777765
No 216
>KOG1859|consensus
Probab=96.71 E-value=0.00025 Score=68.39 Aligned_cols=81 Identities=27% Similarity=0.246 Sum_probs=56.7
Q ss_pred ceEEEecCCCCCccCCCCCC--CccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCccc-ccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQLDV--GTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHIL-DSILELRELKLSGNP 122 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~~--~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~ 122 (369)
.++++.+.|.|+.+|..=+. .++.|.|+||-+.. ....+|.+|+.|||++|-|.....-.| ..|..|+.|+|.||+
T Consensus 211 LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 211 LKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 45677788888888764443 37778888887653 345678888888888888876544433 345678888888888
Q ss_pred eeccc
Q psy12695 123 IQKIT 127 (369)
Q Consensus 123 l~~~~ 127 (369)
|-+-+
T Consensus 291 l~c~p 295 (1096)
T KOG1859|consen 291 LCCAP 295 (1096)
T ss_pred cccCH
Confidence 87654
No 217
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.68 E-value=0.0061 Score=40.50 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=35.6
Q ss_pred cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
..+.|.|.|.+ ...|.|++ |..+... ....|.+.....+-.|.|.|.+++
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~------------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEV------------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Ccccccc------------------cccEEeccCcccCCCcceEecCcc
Confidence 45679999976 24599999 5433211 134677777788889999999877
No 218
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.67 E-value=0.014 Score=42.35 Aligned_cols=72 Identities=15% Similarity=0.366 Sum_probs=41.7
Q ss_pred cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeec-ccc-cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANI-SSG-LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
.++.++|.|.+.|.-++ .|.|++++..+... ... ........|.. .+.|.+..-.-.+...|.|.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~-----~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFST-----TSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEE-----EEEEEEchHHhcCCCeEEEEEEECCe
Confidence 45668999999984443 58999998765221 110 11111123322 34566654333345689999987654
Q ss_pred e
Q psy12695 235 E 235 (369)
Q Consensus 235 ~ 235 (369)
.
T Consensus 88 ~ 88 (94)
T cd05847 88 T 88 (94)
T ss_pred e
Confidence 3
No 219
>KOG2123|consensus
Probab=96.66 E-value=8.4e-05 Score=63.52 Aligned_cols=85 Identities=25% Similarity=0.210 Sum_probs=67.7
Q ss_pred eecccCCceEEEecCCCCCccCCCC-CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcc-cccccccccc
Q psy12695 40 ECKWKGGKETVLCKAKNFTTIPEQL-DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHI-LDSILELREL 116 (369)
Q Consensus 40 ~c~~~~~~~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~L 116 (369)
+|+.....+.++|=+.+|..|.-.. =+.+.+|.||=|.|.. ..|..+++|++|+|..|.|..|..-. +.+|++|+.|
T Consensus 14 K~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 14 KCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3554444567999999999876433 2478999999999985 56899999999999999999886543 3689999999
Q ss_pred ccccccee
Q psy12695 117 KLSGNPIQ 124 (369)
Q Consensus 117 ~L~~N~l~ 124 (369)
.|..|+=.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 99999754
No 220
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.58 E-value=0.00095 Score=34.00 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=18.6
Q ss_pred ccccccccccceecccCCccccc
Q psy12695 112 ELRELKLSGNPIQKITHEAFINV 134 (369)
Q Consensus 112 ~L~~L~L~~N~l~~~~~~~f~~l 134 (369)
+|++|+|++|.|+.++++ |.++
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 589999999999999987 7653
No 221
>KOG0531|consensus
Probab=96.58 E-value=0.0012 Score=62.33 Aligned_cols=78 Identities=33% Similarity=0.460 Sum_probs=60.9
Q ss_pred EEecCCCCCccCCCC--CCCccEEEeecceeChh-h-ccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695 50 VLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDRY-T-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125 (369)
Q Consensus 50 ~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~~-~-f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 125 (369)
+.+..+.+..+-..+ ..++..|+|.+|+|..- . +..+++|+.|+|++|+|+.|.. +..+..|+.|++++|.|+.
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD 154 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh
Confidence 345556666533323 46789999999998743 3 6889999999999999999865 5678889999999999999
Q ss_pred ccCC
Q psy12695 126 ITHE 129 (369)
Q Consensus 126 ~~~~ 129 (369)
+...
T Consensus 155 ~~~~ 158 (414)
T KOG0531|consen 155 ISGL 158 (414)
T ss_pred ccCC
Confidence 9743
No 222
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.57 E-value=0.019 Score=41.80 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCeeeccCCeEEEEEEeeCC-CCC--eEEEEeCCeEeeecc-cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 153 PDVTAEENENVTLSCRATGS-PVP--KIKWIFKEKIIANIS-SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
....+..|+.++|.|.+.|. -++ .++|.++++...... ..........|.+ .+.|.+..-.-.+.-.|.|.
T Consensus 7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~-----~s~l~v~~~~w~~g~~ysC~ 81 (96)
T cd07696 7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSV-----TSTLNVSTDDWISGDTFQCK 81 (96)
T ss_pred CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEE-----EEEEEeCHHHccCCCcEEEE
Confidence 33445668999999999998 333 479999875432211 1111112222322 33454443222223379999
Q ss_pred EEeCC
Q psy12695 229 AKNGA 233 (369)
Q Consensus 229 a~n~~ 233 (369)
+....
T Consensus 82 V~H~~ 86 (96)
T cd07696 82 VTHPD 86 (96)
T ss_pred EECCC
Confidence 87654
No 223
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.54 E-value=0.0058 Score=40.29 Aligned_cols=53 Identities=28% Similarity=0.503 Sum_probs=35.4
Q ss_pred eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
...|.+|+|+|...+. .+.|.+++..... ....+.+.+-. +++|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g-------------------~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG-------------------SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCC-------------------CCceEEeeccC-CCCceEEEEeCCC
Confidence 3569999999975432 3999998844321 11234444545 8899999998644
No 224
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.50 E-value=0.0075 Score=46.00 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=50.5
Q ss_pred ccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccc-----cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695 158 EENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLA-----NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC 227 (369)
Q Consensus 158 ~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 227 (369)
.-+++|.|+|.+.. .+...|.|.+++..+........ ...+... .....+..+|.+...+.- .|.|+|
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEE
Confidence 34789999999965 22345999999887654322211 0111111 112234556888775555 899999
Q ss_pred EEEeCCceEEEEEEEEEeecCC
Q psy12695 228 RAKNGAGEVFTNISLNVIKVET 249 (369)
Q Consensus 228 ~a~n~~g~~~~~~~l~v~~~~~ 249 (369)
.+..........+.|......+
T Consensus 103 eVt~~~~ege~~i~Lk~~~~sw 124 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRVVSW 124 (130)
T ss_dssp EEEETTEEEEEEEEEEE-----
T ss_pred EEEecCCCceEEEEEEEEEEEE
Confidence 9999988888888888755443
No 225
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.46 E-value=0.011 Score=43.44 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=42.9
Q ss_pred eeccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeeccc-cc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 156 TAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISS-GL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
....++.++|.|.+.|.-+ ..|.|+++|..+..... .. .......|.+ .+.|.+..-...+...|.|.+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-----~s~L~v~~~~w~~~~~~sC~V~H 87 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-----SSYLTLTKSDWNKHKVYTCEVTH 87 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-----EEEEEEcHHHhCCCCeEEEEEEe
Confidence 3446788999999988443 35899999987642211 11 1111222322 34555544443445689999976
Q ss_pred CC
Q psy12695 232 GA 233 (369)
Q Consensus 232 ~~ 233 (369)
..
T Consensus 88 ~~ 89 (100)
T cd07699 88 EG 89 (100)
T ss_pred cC
Confidence 54
No 226
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.37 E-value=0.023 Score=41.25 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695 160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
.....+.|.+ .|.|.+.|+|+++......... .......+.+ .+.|.+..-..+|...|+|.+.+..-.
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~--~~~~~gt~tv-----~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTS--KENGDGTVTV-----TSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEE--EeCCCCCEEE-----EEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 3457789988 5899999999987321110000 0001111111 345666444444444899999987643
No 227
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.30 E-value=0.014 Score=43.02 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=41.7
Q ss_pred eeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc--cccccCC---cceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 156 TAEENENVTLSCRATGSPVP--KIKWIFKEKIIANIS--SGLANMN---KRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
.+..|+.++|.|.+.|..++ .+.|++++..+.... ....... ...|.+ .+.|.+..-.-.+...|.|.
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-----~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-----YSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-----EEEEEEcHHHhcCCCcEEEE
Confidence 34457889999999995554 479999998754321 0111111 122332 34555533222344579999
Q ss_pred EEeCC
Q psy12695 229 AKNGA 233 (369)
Q Consensus 229 a~n~~ 233 (369)
+....
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 87643
No 228
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.25 E-value=0.041 Score=39.88 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=40.1
Q ss_pred ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeec-cccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANI-SSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..|+.++|.|.+.|.-++ .+.|++++..+... .... ...+...|.. .+.|.+ ...+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~-----~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQI-----LVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEE-----EEEEEE---cCCCCCEEEEEEEeCC
Confidence 468889999999984444 57999999875432 1111 1111222222 233443 3345558999997654
No 229
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.19 E-value=0.0026 Score=59.60 Aligned_cols=80 Identities=28% Similarity=0.427 Sum_probs=49.1
Q ss_pred eEEEecCCCCCccCCC--CCCCccEEEeecce-eC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 48 ETVLCKAKNFTTIPEQ--LDVGTQVLDLSDNF-LD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 48 ~~~~c~~~~l~~ip~~--~~~~~~~L~l~~n~-i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
..++.+++.++.+|.. .+..+.+|++++|+ +. ...+.++.+|..|.+++|++..++ ..+..+.+|++|++++|.+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc-chhccccccceeccccccc
Confidence 4566677777777764 56667777777773 22 344556666666666666665542 2345566666666666666
Q ss_pred ecccC
Q psy12695 124 QKITH 128 (369)
Q Consensus 124 ~~~~~ 128 (369)
+.++.
T Consensus 268 ~~i~~ 272 (394)
T COG4886 268 SSISS 272 (394)
T ss_pred ccccc
Confidence 66654
No 230
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.17 E-value=0.022 Score=40.20 Aligned_cols=68 Identities=24% Similarity=0.445 Sum_probs=40.7
Q ss_pred ccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccccc-cc-CCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 158 EENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGL-AN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..++.++|.|.+.|. |.. .|.|++++..+....... .. .....|.+ .+.|.+. ..+...|.|.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~-----~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSV-----TSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEE-----EEEEEEE---TTTTGGEEEEEEETT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceee-----eEEEEec---CCCCCEEEEEEEECC
Confidence 348999999999884 433 589999988764321110 00 12222322 3455555 444458999997654
No 231
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.13 E-value=0.0065 Score=46.82 Aligned_cols=64 Identities=14% Similarity=0.368 Sum_probs=25.5
Q ss_pred ccEEEeecce--eChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccc
Q psy12695 68 TQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN 133 (369)
Q Consensus 68 ~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~ 133 (369)
++.+.+.++- |...+|.++..|+.+.+.+ .+..++..+|.+..+|+.+++..| +..+....|.+
T Consensus 37 l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 37 LKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp -SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred cccccccccccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 4444444332 3344455554455555533 444444445544445555554443 44444444443
No 232
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.09 E-value=0.011 Score=63.15 Aligned_cols=93 Identities=26% Similarity=0.310 Sum_probs=58.4
Q ss_pred eEEEecC-CCCCccCCCC-CCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccc-ccee
Q psy12695 48 ETVLCKA-KNFTTIPEQL-DVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG-NPIQ 124 (369)
Q Consensus 48 ~~~~c~~-~~l~~ip~~~-~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~ 124 (369)
..++..+ ++|..+|..+ +..++.|+|++|..-........+|+.|+|++|.|+.+|. .+..+++|+.|+|++ |.|.
T Consensus 805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcC
Confidence 4455544 3466666654 4567777777765221111223578888899999888876 467888899999987 6777
Q ss_pred cccCCcccccCcCccccc
Q psy12695 125 KITHEAFINVPKLNLEDF 142 (369)
Q Consensus 125 ~~~~~~f~~l~~l~~~~~ 142 (369)
.++.. ...+..|...++
T Consensus 884 ~l~~~-~~~L~~L~~L~l 900 (1153)
T PLN03210 884 RVSLN-ISKLKHLETVDF 900 (1153)
T ss_pred ccCcc-cccccCCCeeec
Confidence 77643 344555544443
No 233
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.03 E-value=0.0019 Score=34.36 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.0
Q ss_pred ccccccccccccceecccCCccc
Q psy12695 110 ILELRELKLSGNPIQKITHEAFI 132 (369)
Q Consensus 110 l~~L~~L~L~~N~l~~~~~~~f~ 132 (369)
|.+|+.|+|++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999999886
No 234
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.03 E-value=0.0019 Score=34.36 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.0
Q ss_pred ccccccccccccceecccCCccc
Q psy12695 110 ILELRELKLSGNPIQKITHEAFI 132 (369)
Q Consensus 110 l~~L~~L~L~~N~l~~~~~~~f~ 132 (369)
|.+|+.|+|++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46899999999999999999886
No 235
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.00 E-value=0.045 Score=41.28 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=44.6
Q ss_pred eeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc---cccCCcceEEEEeecceeeEEEcccCCCC-CEEEEEE
Q psy12695 155 VTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSG---LANMNKRQYIIKTINSLSNLTIVAVTMSD-SGIYTCR 228 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~ 228 (369)
.....++.++|.|.+.|.-+. .|.|++++..+...... ....+...|.. .+.|.+..-...+ ...|.|.
T Consensus 13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~-----~S~L~v~~~~w~~~~~~ytC~ 87 (115)
T cd05769 13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI-----SSRLRVSATEWFNPRNTFTCI 87 (115)
T ss_pred HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE-----EEEEEEChHHhccCCCeEEEE
Confidence 334467789999999885444 68999999776532111 00111122322 4566766544334 4489999
Q ss_pred EEeCCce
Q psy12695 229 AKNGAGE 235 (369)
Q Consensus 229 a~n~~g~ 235 (369)
+......
T Consensus 88 V~H~g~~ 94 (115)
T cd05769 88 VQFYGGT 94 (115)
T ss_pred EEEeCCc
Confidence 8765443
No 236
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=95.85 E-value=0.037 Score=40.06 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=39.1
Q ss_pred ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..|+..+|.|.+.|.-+. .+.|.++|..+..... .....+...|.. .+.|.+.. .+...|.|.+.-..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-----~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-----FSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-----EEEEEEEC---CCCCeEEEEEEeCC
Confidence 346668999999994443 5799999877543110 111112222322 23455543 44558999987643
No 237
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=95.82 E-value=0.047 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=39.0
Q ss_pred ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
..|+..+|.|.+.|.-++ .+.|+++|..+....... ...+...|.. ...|.+ ...+...|.|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~-----~s~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYL-----LKSTEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEE-----EEEEEE---CCCCCCeEEEEEEEC
Confidence 456777999999995544 479999998764211111 1112222222 223333 345666899998764
No 238
>KOG4597|consensus
Probab=95.78 E-value=0.017 Score=52.97 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC---CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK---EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222 (369)
Q Consensus 146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 222 (369)
+.+...|....+.+|++..++|.+.|.+.+.|.|-+. +..+. ..... ...+ ........|.|-+....|+
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv-~~~nq---~~e~---p~vtstcql~ic~ewq~~a 269 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV-MRPNQ---TVEN---PVVTSTCQLVICNEWQADA 269 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee-ecCcc---ccCC---cceeeeeeEEEcchhhcCC
Confidence 3455556778889999999999999999999999763 21111 01000 0001 1123457899999999999
Q ss_pred EEEEEEEEeCCceEEEEEEEEEeec
Q psy12695 223 GIYTCRAKNGAGEVFTNISLNVIKV 247 (369)
Q Consensus 223 G~Y~C~a~n~~g~~~~~~~l~v~~~ 247 (369)
|.|+|.+.+..|...+.+.+.+...
T Consensus 270 ~w~tCs~rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 270 GWYTCSARCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred Cceeeccccccceeeccceeeeecc
Confidence 9999999999999999888877654
No 239
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.72 E-value=0.019 Score=44.14 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=54.9
Q ss_pred ceEEEecCCCCCccCCCCCC---CccEEEeecce--eChhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQLDV---GTQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~~---~~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 121 (369)
.+.+...+ ++..++..... .++.+.+.++- +...+|...++|+.+++..| +..|+..+|.+. +|+.+.+.+
T Consensus 37 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~- 112 (129)
T PF13306_consen 37 LKSINFPN-NLTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS- 112 (129)
T ss_dssp -SEEEESS-TTSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-
T ss_pred cccccccc-cccccceeeeecccccccccccccccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-
Confidence 34677755 58888876543 57888997643 77899999999999999887 889999999998 999999886
Q ss_pred ceecccCCcccccCcC
Q psy12695 122 PIQKITHEAFINVPKL 137 (369)
Q Consensus 122 ~l~~~~~~~f~~l~~l 137 (369)
.+..+..+.|.+-++|
T Consensus 113 ~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 113 NITKIEENAFKNCTKL 128 (129)
T ss_dssp B-SS----GGG-----
T ss_pred CccEECCccccccccC
Confidence 7888888899876544
No 240
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.70 E-value=0.0057 Score=55.30 Aligned_cols=79 Identities=23% Similarity=0.192 Sum_probs=51.3
Q ss_pred ceEEEecCCCCCc-cCCC---CC--CCccEEEeecceeCh-------hhccCC-cccCeeeccCCcccccC----Ccccc
Q psy12695 47 KETVLCKAKNFTT-IPEQ---LD--VGTQVLDLSDNFLDR-------YTFRKL-INLVELDLSYNQIQFVP----SHILD 108 (369)
Q Consensus 47 ~~~~~c~~~~l~~-ip~~---~~--~~~~~L~l~~n~i~~-------~~f~~l-~~L~~L~Ls~N~l~~i~----~~~f~ 108 (369)
.+.++.+++.+.. .+.. +. ..++.|+|++|++.. ..+..+ ++|+.|+|++|.|+.-. ...|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 4567777777752 2211 12 248888888888762 245566 78888888888887211 22355
Q ss_pred cccccccccccccceec
Q psy12695 109 SILELRELKLSGNPIQK 125 (369)
Q Consensus 109 ~l~~L~~L~L~~N~l~~ 125 (369)
.+.+|+.|+|++|.++.
T Consensus 163 ~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 163 ANRDLKELNLANNGIGD 179 (319)
T ss_pred hCCCcCEEECcCCCCch
Confidence 56678888888888773
No 241
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.61 E-value=0.044 Score=40.00 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=39.9
Q ss_pred eccCCeEEEEEEeeCCC--C-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEeC
Q psy12695 157 AEENENVTLSCRATGSP--V-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKNG 232 (369)
Q Consensus 157 ~~~G~~~~l~C~~~g~p--~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~ 232 (369)
...++.++|.|.+.|.- . ..|.|.++++. ..............|.+ .+.|.+.. ..-.+| .|.|.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~-----~S~L~v~~-~~W~~g~~ytC~V~H~ 88 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSV-----SSVLPGCA-EEWNKGEPFACTVTHP 88 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEE-----EEEEEeCH-HHhcCCCeEEEEEECC
Confidence 44688999999999854 2 35999998865 11111111112223332 34565542 222344 699998765
Q ss_pred C
Q psy12695 233 A 233 (369)
Q Consensus 233 ~ 233 (369)
.
T Consensus 89 ~ 89 (99)
T cd04986 89 E 89 (99)
T ss_pred C
Confidence 4
No 242
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.51 E-value=0.1 Score=37.89 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=43.7
Q ss_pred CCeeeccCCeEEE-EEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695 153 PDVTAEENENVTL-SCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK 230 (369)
Q Consensus 153 ~~~~~~~G~~~~l-~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 230 (369)
....+.+|+.+.+ .|.+ .|.|.+.|+|+.+....... .........+.+ .+.+.+..-...|.-.++|.+.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V~ 81 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVVS 81 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEEe
Confidence 3456778898888 8987 68999999999763221110 000011112222 3456664444444448999997
Q ss_pred eCC
Q psy12695 231 NGA 233 (369)
Q Consensus 231 n~~ 233 (369)
...
T Consensus 82 H~a 84 (97)
T cd07704 82 HPA 84 (97)
T ss_pred Ccc
Confidence 764
No 243
>KOG3207|consensus
Probab=95.45 E-value=0.005 Score=56.20 Aligned_cols=69 Identities=28% Similarity=0.270 Sum_probs=34.4
Q ss_pred ccCCCCCCCccEEEeecceeC-h---hhccCCcccCeeeccCCcccccCCccc------ccccccccccccccceeccc
Q psy12695 59 TIPEQLDVGTQVLDLSDNFLD-R---YTFRKLINLVELDLSYNQIQFVPSHIL------DSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 59 ~ip~~~~~~~~~L~l~~n~i~-~---~~f~~l~~L~~L~Ls~N~l~~i~~~~f------~~l~~L~~L~L~~N~l~~~~ 127 (369)
..+..++..++.|+|++|++- - .....|+.|..|+++.+.|.+|..-.- ..+++|++|+++.|+|..+.
T Consensus 239 ~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 239 ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 334444555566666666522 1 223345555555666655555432111 23455666666666665443
No 244
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.34 E-value=0.11 Score=37.71 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=38.2
Q ss_pred cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
.++.++|.|.+.|.-+. .|+|++++.. ..... .........|.. .+.|.+..-.-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~-----~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTA-----SSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEE-----EEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999985443 4789999986 22110 001111222222 3445554332112447999997654
No 245
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=95.34 E-value=0.02 Score=53.74 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=18.1
Q ss_pred ceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
+.-.|.+.++..+++|.|.|++.-.
T Consensus 267 ~~~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 267 NGVDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp TSSSEEESS--GGG-EEEEEEEEET
T ss_pred CCcceEecCCCcccCceEEEEEEEC
Confidence 3457999999999999999998543
No 246
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.26 E-value=0.0048 Score=55.76 Aligned_cols=58 Identities=34% Similarity=0.385 Sum_probs=27.0
Q ss_pred CccEEEeecceeC---hhhccCCcc---cCeeeccCCcccccC----Ccccccc-ccccccccccccee
Q psy12695 67 GTQVLDLSDNFLD---RYTFRKLIN---LVELDLSYNQIQFVP----SHILDSI-LELRELKLSGNPIQ 124 (369)
Q Consensus 67 ~~~~L~l~~n~i~---~~~f~~l~~---L~~L~Ls~N~l~~i~----~~~f~~l-~~L~~L~L~~N~l~ 124 (369)
.++.|+|++|.+. ...|..+.. |++|+|++|+++.-. ...+..+ ++|+.|+|++|.++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 4555555555543 223333333 566666655554200 1122333 45555666655555
No 247
>PHA03042 CD47-like protein; Provisional
Probab=95.22 E-value=0.39 Score=41.24 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=45.5
Q ss_pred CCeEEEEEEeeCC-----CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695 160 NENVTLSCRATGS-----PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234 (369)
Q Consensus 160 G~~~~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 234 (369)
.+++.++|.+... ..-.+.|..++..+-..... +..+|.... ...-.|+|+|.|.+...
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---------------n~aSL~~~f-~~~l~GNYTCEv~~l~n 94 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---------------NTSSLKFNF-SKNLSGNYTCEAINKFN 94 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---------------cceEEEEec-cccCCCceeEEEeeccc
Confidence 6788999998652 34569999998776532211 123455433 33448999999988766
Q ss_pred eEEEEEEEEEe
Q psy12695 235 EVFTNISLNVI 245 (369)
Q Consensus 235 ~~~~~~~l~v~ 245 (369)
.....+.+.-.
T Consensus 95 ~gk~~IeLk~~ 105 (286)
T PHA03042 95 KIKNTIELQYV 105 (286)
T ss_pred CccEEEEEEEE
Confidence 55566666555
No 248
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.17 E-value=0.007 Score=28.54 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=11.3
Q ss_pred cccccccccccceeccc
Q psy12695 111 LELRELKLSGNPIQKIT 127 (369)
Q Consensus 111 ~~L~~L~L~~N~l~~~~ 127 (369)
++|+.|+|++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998764
No 249
>PHA02982 hypothetical protein; Provisional
Probab=95.06 E-value=0.1 Score=42.81 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=55.5
Q ss_pred CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeec-cccccc---------CCcceEEEEeecceeeEEEcccCCCC
Q psy12695 153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANI-SSGLAN---------MNKRQYIIKTINSLSNLTIVAVTMSD 221 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~L~I~~v~~~D 221 (369)
.++.+.+|+.+.|.|... +.-.....|+...+..... ..+... .-+..+.+......++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 456678899999999863 3334468898865433221 111100 11223455566778899999999999
Q ss_pred CEEEEEEEEeCCce
Q psy12695 222 SGIYTCRAKNGAGE 235 (369)
Q Consensus 222 ~G~Y~C~a~n~~g~ 235 (369)
.|-|+|.+....+.
T Consensus 112 ~GCYtc~~ks~~~k 125 (251)
T PHA02982 112 LGCFTCEAKDAEGK 125 (251)
T ss_pred CCceEEEEecCCCc
Confidence 99999999886654
No 250
>KOG4658|consensus
Probab=95.04 E-value=0.025 Score=58.04 Aligned_cols=89 Identities=27% Similarity=0.279 Sum_probs=68.0
Q ss_pred eEEEecCCCCCccCCCC-CCCccEEEeecce-----eChhhccCCcccCeeeccCCc-ccccCCcccccccccccccccc
Q psy12695 48 ETVLCKAKNFTTIPEQL-DVGTQVLDLSDNF-----LDRYTFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKLSG 120 (369)
Q Consensus 48 ~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~-----i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~ 120 (369)
+++...++.+..++... ...+++|-+..|. +....|..++.|+.|||++|. +..+|. ..+.|-+||+|+|++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccC
Confidence 45666677777777654 2368999999985 455669999999999999885 777876 467899999999999
Q ss_pred cceecccCCcccccCcCc
Q psy12695 121 NPIQKITHEAFINVPKLN 138 (369)
Q Consensus 121 N~l~~~~~~~f~~l~~l~ 138 (369)
..++.+|.+ +.+|..|.
T Consensus 605 t~I~~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 605 TGISHLPSG-LGNLKKLI 621 (889)
T ss_pred CCccccchH-HHHHHhhh
Confidence 999988864 44444443
No 251
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.01 E-value=0.13 Score=37.38 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=38.6
Q ss_pred eeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695 156 TAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231 (369)
Q Consensus 156 ~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 231 (369)
....++.++|.|.+.|.-++ .++|.++|..+..... .....+. .|.. .+.|.+..-. ....|.|.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~-----~S~L~vt~~~--~~~~ysC~V~H 83 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYST-----TSWLTVTKDS--LGKKFRCIYKH 83 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEE-----EEEEEECchh--CCCeEEEEEEE
Confidence 33446778999999995444 4799999976542211 1111111 3322 3345544321 22359999976
Q ss_pred C
Q psy12695 232 G 232 (369)
Q Consensus 232 ~ 232 (369)
.
T Consensus 84 ~ 84 (96)
T cd07697 84 E 84 (96)
T ss_pred C
Confidence 3
No 252
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=94.80 E-value=0.02 Score=30.29 Aligned_cols=18 Identities=56% Similarity=0.670 Sum_probs=13.8
Q ss_pred CcccCeeeccCCcccccC
Q psy12695 86 LINLVELDLSYNQIQFVP 103 (369)
Q Consensus 86 l~~L~~L~Ls~N~l~~i~ 103 (369)
|.+|+.|+|++|+|+.|.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 467888888888887763
No 253
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.76 E-value=0.039 Score=51.04 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=49.0
Q ss_pred ceEEEecCCCCCccCCCCCCCccEEEeecce-eC--hhhccCCcccCeeeccCC-cccccCCcccccccccccccccccc
Q psy12695 47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNF-LD--RYTFRKLINLVELDLSYN-QIQFVPSHILDSILELRELKLSGNP 122 (369)
Q Consensus 47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~-i~--~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~ 122 (369)
.+.++.+++.|+.+| .+|.+++.|.|++.. +. ++.+ .++|+.|+|++| .|..+|. +|+.|+|++|.
T Consensus 54 l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~ 123 (426)
T PRK15386 54 SGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLEIKGSA 123 (426)
T ss_pred CCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEEeCCCC
Confidence 357888888999999 599999999998744 32 3323 257999999998 7776654 46666677665
Q ss_pred e
Q psy12695 123 I 123 (369)
Q Consensus 123 l 123 (369)
+
T Consensus 124 ~ 124 (426)
T PRK15386 124 T 124 (426)
T ss_pred C
Confidence 4
No 254
>KOG4658|consensus
Probab=94.75 E-value=0.012 Score=60.36 Aligned_cols=96 Identities=25% Similarity=0.271 Sum_probs=72.4
Q ss_pred eEEEecCCC--CCccCCCCC---CCccEEEeecce-eC--hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695 48 ETVLCKAKN--FTTIPEQLD---VGTQVLDLSDNF-LD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS 119 (369)
Q Consensus 48 ~~~~c~~~~--l~~ip~~~~---~~~~~L~l~~n~-i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 119 (369)
+++-..++. +..++..+. +.+++|||++|. +. |...++|-+|++|+|++..|+.+|.+ |..|..|.+|+|.
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLE 626 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccc
Confidence 344444454 666766443 468999999887 32 66778899999999999999999885 7899999999999
Q ss_pred ccceecccCCcccccCcCccccccC
Q psy12695 120 GNPIQKITHEAFINVPKLNLEDFAC 144 (369)
Q Consensus 120 ~N~l~~~~~~~f~~l~~l~~~~~~c 144 (369)
.+.-....++....+++|....+.+
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccchhhhcccccEEEeec
Confidence 8875555577777788777665544
No 255
>KOG2739|consensus
Probab=94.15 E-value=0.021 Score=48.73 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=47.4
Q ss_pred CCccEEEeecce--eChh---hccCCcccCeeeccCCcccccCC-cccccccccccccccccceecccC---CcccccCc
Q psy12695 66 VGTQVLDLSDNF--LDRY---TFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQKITH---EAFINVPK 136 (369)
Q Consensus 66 ~~~~~L~l~~n~--i~~~---~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~f~~l~~ 136 (369)
+.++.|.|+.|. +..+ --..+++|++|+|++|+|..+.. .....+.+|..|+|.+++.+.+.. ..|.-+++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~ 144 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPS 144 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhh
Confidence 378889999984 3311 11245888999999998774221 113456678888888887766543 24555665
Q ss_pred Cccc
Q psy12695 137 LNLE 140 (369)
Q Consensus 137 l~~~ 140 (369)
|...
T Consensus 145 L~~L 148 (260)
T KOG2739|consen 145 LKYL 148 (260)
T ss_pred hccc
Confidence 5443
No 256
>KOG3207|consensus
Probab=94.04 E-value=0.021 Score=52.22 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=28.3
Q ss_pred cCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695 84 RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
...++|+.|+|..|....+....+.-+..|++|||++|.+-..+
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 35566677777777544444555566667777777777766655
No 257
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.93 E-value=0.063 Score=49.71 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=34.3
Q ss_pred ceEEEecC-CCCCccCCCCCCCccEEEeecc-eeChhhccCCcccCeeeccCCccc
Q psy12695 47 KETVLCKA-KNFTTIPEQLDVGTQVLDLSDN-FLDRYTFRKLINLVELDLSYNQIQ 100 (369)
Q Consensus 47 ~~~~~c~~-~~l~~ip~~~~~~~~~L~l~~n-~i~~~~f~~l~~L~~L~Ls~N~l~ 100 (369)
.+.+...+ ++|+.+|..+|.+++.|+|++| +|.. + ...|+.|+|+.|.+.
T Consensus 74 LtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s--L--P~sLe~L~L~~n~~~ 125 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG--L--PESVRSLEIKGSATD 125 (426)
T ss_pred CcEEEccCCCCcccCCchhhhhhhheEccCcccccc--c--ccccceEEeCCCCCc
Confidence 45566554 6788889888999999999988 4431 1 134677777766643
No 258
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=93.86 E-value=0.034 Score=29.26 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.4
Q ss_pred cccCeeeccCCcccccCC
Q psy12695 87 INLVELDLSYNQIQFVPS 104 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~i~~ 104 (369)
.+|+.|+.++|+|+.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357888888888888876
No 259
>KOG1480|consensus
Probab=93.03 E-value=0.056 Score=52.76 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=56.2
Q ss_pred CCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695 151 ITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 229 (369)
.+....|..+..+++.|.. .+.|...+.|++++..+...... .......+.+..+...|.|.|+|.|
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~------------~~~~d~~li~~~arlsd~~nytc~a 202 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV------------IRASDHNLIISQARLSDSGNYTCEA 202 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccccCCCCCccccc------------hhhhcCCccccchhhhhcccceeee
Confidence 4556678888899999987 78888899999998665531110 0112457899999999999999999
Q ss_pred EeCCceE
Q psy12695 230 KNGAGEV 236 (369)
Q Consensus 230 ~n~~g~~ 236 (369)
.|..+..
T Consensus 203 ~ni~~~r 209 (909)
T KOG1480|consen 203 TNIVAKR 209 (909)
T ss_pred ehhhccc
Confidence 9988763
No 260
>KOG0473|consensus
Probab=93.01 E-value=0.0058 Score=51.24 Aligned_cols=83 Identities=30% Similarity=0.335 Sum_probs=64.8
Q ss_pred CCccCC-CC--CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcc
Q psy12695 57 FTTIPE-QL--DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131 (369)
Q Consensus 57 l~~ip~-~~--~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f 131 (369)
+.++|- ++ ....+.|||+.|++- ..-|+-+..|..|||+.|+|..+|.+ |..+..++.+++.+|.++..| -.|
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p-~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP-KSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC-ccc
Confidence 556662 22 346889999999965 44688999999999999999999886 677888999999999888886 467
Q ss_pred cccCcCcccc
Q psy12695 132 INVPKLNLED 141 (369)
Q Consensus 132 ~~l~~l~~~~ 141 (369)
..++.+..++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 7777765544
No 261
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=92.92 E-value=0.78 Score=33.25 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=39.8
Q ss_pred eccCCeEEEEEEeeC-CCC--CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEe
Q psy12695 157 AEENENVTLSCRATG-SPV--PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKN 231 (369)
Q Consensus 157 ~~~G~~~~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n 231 (369)
+.+|..+++.|.+.+ .|. ..+.|++....+.+.+-......+ ........+++.. +.+|.| .|.|.|.=
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~k-----s~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKK-----SLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccC-----CCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 488999999999965 444 458999876555432211000000 0011123455544 477777 89999853
No 262
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.49 E-value=2.6 Score=29.40 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=23.3
Q ss_pred eEEEcccCCCCCEEEEEEE-EeCCceEEEEEEEEE
Q psy12695 211 NLTIVAVTMSDSGIYTCRA-KNGAGEVFTNISLNV 244 (369)
Q Consensus 211 ~L~I~~v~~~D~G~Y~C~a-~n~~g~~~~~~~l~v 244 (369)
..........|+|.+.|.| .+..-.....+.+.|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4556677789999999999 555544454555544
No 263
>KOG2982|consensus
Probab=92.27 E-value=0.062 Score=46.94 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=40.8
Q ss_pred CccEEEeecceeCh-----hhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695 67 GTQVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 67 ~~~~L~l~~n~i~~-----~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 124 (369)
.+..|||.+|.|+. ....+||.|+.|+|+.|+|+..-...=..+.+|+.|-|+|..+.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 57789999999873 23558999999999999987632211124457777777776554
No 264
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=92.21 E-value=0.055 Score=31.07 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=3.8
Q ss_pred ehhhHHHHHH
Q psy12695 261 ASLTTVVTII 270 (369)
Q Consensus 261 ~~~~~~v~~~ 270 (369)
++++++++++
T Consensus 7 aIIv~V~vg~ 16 (38)
T PF02439_consen 7 AIIVAVVVGM 16 (38)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 265
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.21 E-value=0.054 Score=60.46 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=22.3
Q ss_pred eccCCcccccCCcccccccccccccccccceeccc
Q psy12695 93 DLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 93 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
||++|+|+.|++++|..|.+|+.|+|++|++.+-+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 46666666666666666666666666666665543
No 266
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.06 E-value=0.26 Score=42.13 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 173 PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 173 p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..|.+.|..+++..... ..+..+ ...|.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~g--------n~~~nI---T~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSG--------NSYVNI---TETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCC--------CCeEEE---ccCceEEeeccccccCCceEEEEEEEe
Confidence 46889999876654421 112222 246789999999999999999986543
No 267
>PHA03286 envelope glycoprotein E; Provisional
Probab=91.68 E-value=0.43 Score=43.90 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.0
Q ss_pred eEEEcccCCCCCEEEEEEEE-eCCceEEEEEEE
Q psy12695 211 NLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISL 242 (369)
Q Consensus 211 ~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~l 242 (369)
.|.+.++..+++|.|.|++. |..-.+.....+
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~eAWtYtlv 340 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRPLAWTYVYL 340 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcceeeeEEEE
Confidence 58899999999999999985 544445555443
No 268
>PTZ00370 STEVOR; Provisional
Probab=91.63 E-value=0.071 Score=46.00 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=22.4
Q ss_pred ehhhHHHHHHHHHHHHhheeeeeecccccchh
Q psy12695 261 ASLTTVVTIILTACFVVLCIILLKAKRKRYAD 292 (369)
Q Consensus 261 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (369)
-|+++.|.++++++++++++|.+|||++.|+.
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 35666666677777777888877777777653
No 269
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=91.62 E-value=0.065 Score=46.09 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=21.6
Q ss_pred ehhhHHHHHHHHHHHHhheeeeeecccccch
Q psy12695 261 ASLTTVVTIILTACFVVLCIILLKAKRKRYA 291 (369)
Q Consensus 261 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 291 (369)
-|+++.|.++++++++++++|.+|||++.|+
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3566666666777777788877777777664
No 270
>KOG1909|consensus
Probab=91.53 E-value=0.12 Score=46.10 Aligned_cols=58 Identities=26% Similarity=0.251 Sum_probs=25.9
Q ss_pred CccEEEeecceeCh-------hhccCCcccCeeeccCCcccc----cCCccccccccccccccccccee
Q psy12695 67 GTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQF----VPSHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 67 ~~~~L~l~~n~i~~-------~~f~~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~ 124 (369)
.++++...+|++.. .+|+..+.|+.+.++.|.|.. +-..+|..+++|+.|||.+|-++
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 34455555555431 234444455555555554432 11223444455555555555443
No 271
>KOG2739|consensus
Probab=91.36 E-value=0.091 Score=44.96 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=42.2
Q ss_pred CccEEEeecceeCh-hhccCCcccCeeeccCC--cccc-cCCcccccccccccccccccceeccc
Q psy12695 67 GTQVLDLSDNFLDR-YTFRKLINLVELDLSYN--QIQF-VPSHILDSILELRELKLSGNPIQKIT 127 (369)
Q Consensus 67 ~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N--~l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~ 127 (369)
.++.|.+.+-.+.. ..|..|++|+.|+||.| +++. ++..+ ..+++|+.|+|++|+|+-+.
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccc
Confidence 34455555555443 45889999999999999 5443 43333 34599999999999988643
No 272
>KOG3515|consensus
Probab=91.21 E-value=0.28 Score=48.69 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=47.9
Q ss_pred eeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 155 VTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
..+..|+.|.|.|.+.++|+ +++.|++.+.... . ++. ......|.......+.-+.|.|.+.|..
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~---------~~~---~~~~~~~~~~~~~~~~~~~~~c~a~ns~ 82 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--G---------RYA---TIADPTLVTTGDVRDTVAELNCRAFNSV 82 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc--c---------ccc---cccCCceeeecchhhhhhhhhhhhcccc
Confidence 37889999999999977665 4699999775433 0 000 0012345555555556667888887775
Q ss_pred ceE-EEEEEEEEee
Q psy12695 234 GEV-FTNISLNVIK 246 (369)
Q Consensus 234 g~~-~~~~~l~v~~ 246 (369)
|.. .....+.+..
T Consensus 83 ~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 83 GMPSRCPMILDVDY 96 (741)
T ss_pred cCceecceeecccc
Confidence 552 3334444443
No 273
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.59 E-value=0.14 Score=26.40 Aligned_cols=15 Identities=60% Similarity=0.505 Sum_probs=9.4
Q ss_pred cccCeeeccCCcccc
Q psy12695 87 INLVELDLSYNQIQF 101 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~ 101 (369)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567788888887664
No 274
>KOG2123|consensus
Probab=90.58 E-value=0.048 Score=47.16 Aligned_cols=71 Identities=28% Similarity=0.290 Sum_probs=55.3
Q ss_pred CccEEEeecceeChh-hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCc-ccccCcCcc
Q psy12695 67 GTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA-FINVPKLNL 139 (369)
Q Consensus 67 ~~~~L~l~~n~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-f~~l~~l~~ 139 (369)
++..|++-+..|..- .-..++.|+.|.||-|+|+++.+ |..+.+|++|+|..|.|..+..-. +.++++|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345666666666654 34589999999999999999965 889999999999999999987643 346666543
No 275
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.46 E-value=5.3 Score=37.85 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=23.6
Q ss_pred ceeeEEEcccCCCCCEEEEEEEE-eCCceEEEE
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTN 239 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~ 239 (369)
+.-.|.+.++..+++|.|.|++. |..-.+...
T Consensus 313 ~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~Y 345 (542)
T PHA03283 313 NRVDLLFKNAPASASGLYVFVLLYNGHPEAWTY 345 (542)
T ss_pred CCcceEeccCCcccCceEEEEEEECCeeeeeEE
Confidence 34579999999999999999985 443334443
No 276
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=90.21 E-value=0.2 Score=39.07 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.9
Q ss_pred eeeeeecccc
Q psy12695 279 CIILLKAKRK 288 (369)
Q Consensus 279 ~~~~~~~~~~ 288 (369)
++|++|+||+
T Consensus 71 f~~c~r~kkt 80 (154)
T PF04478_consen 71 FIFCIRRKKT 80 (154)
T ss_pred eeEEEecccC
Confidence 3333344443
No 277
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=90.01 E-value=0.42 Score=28.07 Aligned_cols=6 Identities=0% Similarity=0.191 Sum_probs=2.3
Q ss_pred eeeeec
Q psy12695 280 IILLKA 285 (369)
Q Consensus 280 ~~~~~~ 285 (369)
++||||
T Consensus 33 ~~~~rR 38 (40)
T PF08693_consen 33 FFWYRR 38 (40)
T ss_pred heEEec
Confidence 334443
No 278
>KOG1026|consensus
Probab=89.94 E-value=0.42 Score=47.59 Aligned_cols=148 Identities=23% Similarity=0.284 Sum_probs=87.3
Q ss_pred eChhhccCCcccCeeeccCCc---ccccCCcccccccccccccccccceecccCCcccccCcCcccc-------ccCCCC
Q psy12695 78 LDRYTFRKLINLVELDLSYNQ---IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED-------FACSPN 147 (369)
Q Consensus 78 i~~~~f~~l~~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~-------~~c~p~ 147 (369)
+....|...+.|...+++.|. +..++...+..+ .+..|.+.+|.........+.. .+.... ..|.-.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~l~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~c~~~ 176 (774)
T KOG1026|consen 100 SQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETL-SLTELSLVGNPFTCSCSIRWLD--RYREDGFCVPYRGLACLNF 176 (774)
T ss_pred ecccceeccccccccccchhhhcccccccccccccc-ccchhhhccCCCCcchhhhHHh--hhcccCCCCCchhhHHHhh
Confidence 345677788888889999998 666666666665 4556666667777766554443 222222 222111
Q ss_pred c------------------cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecce
Q psy12695 148 I------------------RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209 (369)
Q Consensus 148 i------------------~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (369)
+ ........+..|..+++.|.+.+.|.|.+.|+.......+.........
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~------------ 244 (774)
T KOG1026|consen 177 LSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR------------ 244 (774)
T ss_pred cCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc------------
Confidence 1 0011245678899999999999999999999987654433221111000
Q ss_pred eeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247 (369)
Q Consensus 210 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~ 247 (369)
....... .+.|.+.|..|.....+.+.+..+
T Consensus 245 -~~~~~~~------~~~c~~E~~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 245 -SECEVLE------NDLCIAENAVARSNPSILLVVDLP 275 (774)
T ss_pred -ccceeee------chhhHHHHhhhhcCceeeeEEecc
Confidence 0000000 177888888777666666555443
No 279
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=89.11 E-value=1.8 Score=31.76 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=30.2
Q ss_pred ecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEe
Q psy12695 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNISLNVI 245 (369)
Q Consensus 206 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~ 245 (369)
...+..|.|..++..|+|.|.-.+++..|.. ...+.+.|.
T Consensus 67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3456789999999999999999999999986 344555553
No 280
>PF15102 TMEM154: TMEM154 protein family
Probab=88.83 E-value=0.47 Score=36.78 Aligned_cols=15 Identities=40% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHhheeeeeeccc
Q psy12695 273 ACFVVLCIILLKAKR 287 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (369)
+++++++++++||||
T Consensus 72 Ll~vV~lv~~~kRkr 86 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHheeEEeecc
Confidence 333333333333333
No 281
>PF15050 SCIMP: SCIMP protein
Probab=88.00 E-value=0.75 Score=33.98 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=3.2
Q ss_pred CCCccccc
Q psy12695 359 DKIDHEEN 366 (369)
Q Consensus 359 ~~~~~~~~ 366 (369)
+-+++|+.
T Consensus 115 ePe~DYDD 122 (133)
T PF15050_consen 115 EPENDYDD 122 (133)
T ss_pred Cccccccc
Confidence 33344443
No 282
>KOG3515|consensus
Probab=87.98 E-value=1.8 Score=43.18 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=49.9
Q ss_pred eeeccCCeEEEEEEe--eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695 155 VTAEENENVTLSCRA--TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 232 (369)
.....+..+.+.|.+ .+.|.+.+.|..++.................. .......+.+.+...+.++.|.|+|.|.|.
T Consensus 107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~-gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGAL-GSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccccc-CceeccccceeeEEEEecCCceeEcccccc
Confidence 345678889999965 46777789999988776654322111110000 000023456888888899999999999884
No 283
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=87.42 E-value=0.32 Score=35.25 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHhheeeeeecc
Q psy12695 275 FVVLCIILLKAK 286 (369)
Q Consensus 275 ~~~~~~~~~~~~ 286 (369)
+.++++|+.+||
T Consensus 83 v~~l~w~f~~r~ 94 (96)
T PTZ00382 83 VGFLCWWFVCRG 94 (96)
T ss_pred HHHHhheeEEee
Confidence 333444444443
No 284
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.38 E-value=0.4 Score=25.84 Aligned_cols=15 Identities=47% Similarity=0.445 Sum_probs=11.2
Q ss_pred cccCeeeccCCcccc
Q psy12695 87 INLVELDLSYNQIQF 101 (369)
Q Consensus 87 ~~L~~L~Ls~N~l~~ 101 (369)
+.|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888888753
No 285
>PHA03052 Hypothetical protein; Provisional
Probab=86.77 E-value=3.7 Score=27.24 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=27.4
Q ss_pred CCCeeeccCCeEEEEEEee-CC--CCCeEEEEeCCeEe
Q psy12695 152 TPDVTAEENENVTLSCRAT-GS--PVPKIKWIFKEKII 186 (369)
Q Consensus 152 ~~~~~~~~G~~~~l~C~~~-g~--p~p~i~W~~~~~~~ 186 (369)
|..+.+..|..+++.|++. |. ..+.+.|..++..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4677889999999999994 33 34568899888766
No 286
>PHA03189 UL14 tegument protein; Provisional
Probab=86.20 E-value=10 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=16.5
Q ss_pred ccCCCCCEEEEEEEEeCCceE
Q psy12695 216 AVTMSDSGIYTCRAKNGAGEV 236 (369)
Q Consensus 216 ~v~~~D~G~Y~C~a~n~~g~~ 236 (369)
++..+-+|+|.|+..|..+..
T Consensus 139 ~v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEEecccceEEEEecccccee
Confidence 455677999999999987554
No 287
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=86.14 E-value=1.1 Score=37.06 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCcccc
Q psy12695 350 DTTRGPEPRDKIDHEE 365 (369)
Q Consensus 350 ~~~~~p~~~~~~~~~~ 365 (369)
.++-+|.+++--.||.
T Consensus 144 pt~~~P~sPDLarHYk 159 (221)
T PF08374_consen 144 PTTFKPDSPDLARHYK 159 (221)
T ss_pred CCCCCCCCcchhhhcc
Confidence 3455677776666553
No 288
>PHA03240 envelope glycoprotein M; Provisional
Probab=85.49 E-value=3.6 Score=34.00 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=40.5
Q ss_pred CeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----------eEeeeccccccc--------CCcceEEEEeecceeeEEE
Q psy12695 154 DVTAEENENVTLSCRATGSPVPKIKWIFKE-----------KIIANISSGLAN--------MNKRQYIIKTINSLSNLTI 214 (369)
Q Consensus 154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~L~I 214 (369)
.+++.+|++|+|.-.-.-.|...+.|+++. ..+......... ...... ...-.+++|.|
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i--~y~C~NstL~i 109 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFI--LYECHNSTLII 109 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCce--EEEeccceEEE
Confidence 456788999988533222456679999821 112222111100 011111 12234678999
Q ss_pred cccCCCCCEEEE
Q psy12695 215 VAVTMSDSGIYT 226 (369)
Q Consensus 215 ~~v~~~D~G~Y~ 226 (369)
.++..+|.|.|.
T Consensus 110 ~~vn~sd~~nYc 121 (258)
T PHA03240 110 AHLNLSDAGEYC 121 (258)
T ss_pred EEEeecCcchhh
Confidence 999999999994
No 289
>KOG3763|consensus
Probab=85.48 E-value=0.33 Score=46.11 Aligned_cols=58 Identities=34% Similarity=0.373 Sum_probs=40.3
Q ss_pred CccEEEeecceeCh-hhcc----CCcccCeeeccCC--cccccCC-cccccccccccccccccceec
Q psy12695 67 GTQVLDLSDNFLDR-YTFR----KLINLVELDLSYN--QIQFVPS-HILDSILELRELKLSGNPIQK 125 (369)
Q Consensus 67 ~~~~L~l~~n~i~~-~~f~----~l~~L~~L~Ls~N--~l~~i~~-~~f~~l~~L~~L~L~~N~l~~ 125 (369)
.+..|.|++|++-. .+++ ..++|+.|+||+| .+..-.+ +-+.++ .|++|.|.||+|.+
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 57788999999542 2333 4588999999999 4443211 223444 69999999999864
No 290
>PHA03273 envelope glycoprotein C; Provisional
Probab=84.92 E-value=7.1 Score=36.45 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=11.9
Q ss_pred EEEeeCCCC--CeEEEEeCC
Q psy12695 166 SCRATGSPV--PKIKWIFKE 183 (369)
Q Consensus 166 ~C~~~g~p~--p~i~W~~~~ 183 (369)
.|.+.=.|. ..+.|+.++
T Consensus 357 VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 357 VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEecccccCCCeeEEEEccC
Confidence 466655554 568898766
No 291
>KOG1909|consensus
Probab=84.92 E-value=0.36 Score=43.21 Aligned_cols=95 Identities=21% Similarity=0.159 Sum_probs=52.8
Q ss_pred eEEEecCCCCC--ccCC---CC--CCCccEEEeecceeCh----------------hhccCCcccCeeeccCCcccccC-
Q psy12695 48 ETVLCKAKNFT--TIPE---QL--DVGTQVLDLSDNFLDR----------------YTFRKLINLVELDLSYNQIQFVP- 103 (369)
Q Consensus 48 ~~~~c~~~~l~--~ip~---~~--~~~~~~L~l~~n~i~~----------------~~f~~l~~L~~L~Ls~N~l~~i~- 103 (369)
+.++.++|.+. .++. -| -.++++|.|.||.+.+ ..-..-++|+.+....|++..-+
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 46777777664 2321 11 3467777777777432 11234456777777777775432
Q ss_pred ---Ccccccccccccccccccceec----ccCCcccccCcCccccc
Q psy12695 104 ---SHILDSILELRELKLSGNPIQK----ITHEAFINVPKLNLEDF 142 (369)
Q Consensus 104 ---~~~f~~l~~L~~L~L~~N~l~~----~~~~~f~~l~~l~~~~~ 142 (369)
..+|+..+.|+.+.+..|.|.. +-...|...++|...++
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence 2346666777777777776643 11233445555544443
No 292
>KOG0473|consensus
Probab=84.85 E-value=0.042 Score=46.22 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=62.6
Q ss_pred eEEEecCCCCCccCCCC--CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695 48 ETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123 (369)
Q Consensus 48 ~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 123 (369)
+.++.+.+.+-.+-..+ -..+..|+|+.|+|. +..|..+..+..+++.+|.++..|. +|..++.++.+++.+|.+
T Consensus 45 tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 45 TVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhhccCcc
Confidence 45777777765554433 345778999999975 7889999999999999999999876 689999999999999986
Q ss_pred ec
Q psy12695 124 QK 125 (369)
Q Consensus 124 ~~ 125 (369)
..
T Consensus 124 ~~ 125 (326)
T KOG0473|consen 124 FR 125 (326)
T ss_pred hH
Confidence 54
No 293
>PHA03269 envelope glycoprotein C; Provisional
Probab=84.03 E-value=17 Score=34.27 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=13.1
Q ss_pred EEEeeCCCC--CeEEEEeCCeE
Q psy12695 166 SCRATGSPV--PKIKWIFKEKI 185 (369)
Q Consensus 166 ~C~~~g~p~--p~i~W~~~~~~ 185 (369)
.|.+.-.|. ..+.|+.++..
T Consensus 449 VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 449 VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred EEecccccCCCceEEEEecCCC
Confidence 466655554 36899887654
No 294
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=83.79 E-value=3.8 Score=31.59 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q psy12695 331 PLVPPHPPP 339 (369)
Q Consensus 331 ~~~~~~~~~ 339 (369)
.|.++.+.+
T Consensus 124 ~~~~d~PPp 132 (155)
T PF10873_consen 124 EYPPDLPPP 132 (155)
T ss_pred cccCCCCcC
Confidence 344444433
No 295
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=83.16 E-value=0.37 Score=42.44 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=0.0
Q ss_pred EEEcccCCCCCEEEEEEE
Q psy12695 212 LTIVAVTMSDSGIYTCRA 229 (369)
Q Consensus 212 L~I~~v~~~D~G~Y~C~a 229 (369)
+.+.+++..-.| .|..
T Consensus 95 f~V~svsv~~~G--~C~~ 110 (290)
T PF05454_consen 95 FKVKSVSVIPIG--SCQD 110 (290)
T ss_dssp ------------------
T ss_pred CceeEEEEEEee--ccCC
Confidence 444455444333 3543
No 296
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=82.93 E-value=26 Score=29.40 Aligned_cols=21 Identities=19% Similarity=0.473 Sum_probs=13.8
Q ss_pred EEEEeeCCCC--CeEEEEeCCeE
Q psy12695 165 LSCRATGSPV--PKIKWIFKEKI 185 (369)
Q Consensus 165 l~C~~~g~p~--p~i~W~~~~~~ 185 (369)
..|.+.-.|. ..+.|..++..
T Consensus 94 AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 94 AVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred EEEEcceeeCCCeEEEEEECCcc
Confidence 3566665553 47999987754
No 297
>PHA03281 envelope glycoprotein E; Provisional
Probab=81.86 E-value=4.7 Score=38.28 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=25.0
Q ss_pred ceeeEEEcccCCCCCEEEEEEEE-eCCceEEEEEEE
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISL 242 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~l 242 (369)
+...|.+.++..+++|.|.|++. |..-.+.....+
T Consensus 473 n~vdL~F~nApasaSGLYVfVl~yNGHVeAWtYtlv 508 (642)
T PHA03281 473 GGSALKFVDAAESLSGLYVFIIHFNGHVEAVAYTVV 508 (642)
T ss_pred CCcceEeccCCcccCceEEEEEEECCeeeeeEEEEE
Confidence 34569999999999999999985 444344444433
No 298
>PHA03271 envelope glycoprotein C; Provisional
Probab=81.00 E-value=33 Score=31.79 Aligned_cols=20 Identities=15% Similarity=0.536 Sum_probs=11.4
Q ss_pred EEeeCCC-CCeEEEEeCCeEe
Q psy12695 167 CRATGSP-VPKIKWIFKEKII 186 (369)
Q Consensus 167 C~~~g~p-~p~i~W~~~~~~~ 186 (369)
|.+.=.| ...+.|+.++...
T Consensus 367 CtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 367 CTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred EeccccCCCcEEEEEecCCCC
Confidence 5544333 2368898776543
No 299
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=80.68 E-value=2.4 Score=31.92 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=14.3
Q ss_pred CCEEEEEEEEeC-CceEEEEEEEEEee
Q psy12695 221 DSGIYTCRAKNG-AGEVFTNISLNVIK 246 (369)
Q Consensus 221 D~G~Y~C~a~n~-~g~~~~~~~l~v~~ 246 (369)
|...|.|.-.+. .|..-..+.|....
T Consensus 63 dl~~~~CrC~~GYtGeRCEh~dLl~~~ 89 (139)
T PHA03099 63 DIDGMYCRCSHGYTGIRCQHVVLVDYQ 89 (139)
T ss_pred cCCCceeECCCCcccccccceeeeeee
Confidence 334578876544 46555555654443
No 300
>PF15096 G6B: G6B family
Probab=80.57 E-value=6.4 Score=31.75 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=14.5
Q ss_pred eeeccCCeEEEEEEeeCCC
Q psy12695 155 VTAEENENVTLSCRATGSP 173 (369)
Q Consensus 155 ~~~~~G~~~~l~C~~~g~p 173 (369)
+....|+.|+|.|...+.|
T Consensus 6 LeGrPGDRVnlSCvGVs~p 24 (224)
T PF15096_consen 6 LEGRPGDRVNLSCVGVSHP 24 (224)
T ss_pred ccCCCCCeeeeeeccCCCc
Confidence 4567899999999765554
No 301
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=79.90 E-value=14 Score=26.36 Aligned_cols=67 Identities=21% Similarity=0.402 Sum_probs=40.0
Q ss_pred CCCCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695 151 ITPDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225 (369)
Q Consensus 151 ~~~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 225 (369)
.++...+..|..++..|.... .....|.|..++..++. .++. ......+..++.+......-.|
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~----------~qy~-~in~~~SsVT~~~~~~~~~~L~ 77 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG----------SQYR-VINDTVSSVTLPNLNPTGATLF 77 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC----------GCEE-EESTTEEEEEESS--SSEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh----------hHcc-eeCCeEEEEEEccCCCCCceEE
Confidence 356677899999999999842 24457999988874432 1111 1223346777777666655566
Q ss_pred EEE
Q psy12695 226 TCR 228 (369)
Q Consensus 226 ~C~ 228 (369)
.|.
T Consensus 78 cC~ 80 (89)
T PF06328_consen 78 CCK 80 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 302
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=78.11 E-value=2.7 Score=36.68 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=5.3
Q ss_pred EEEEEEEe
Q psy12695 224 IYTCRAKN 231 (369)
Q Consensus 224 ~Y~C~a~n 231 (369)
.|.|....
T Consensus 175 ~nvC~~~~ 182 (278)
T PF06697_consen 175 PNVCSTSR 182 (278)
T ss_pred Cceeeeec
Confidence 47787664
No 303
>KOG3665|consensus
Probab=77.72 E-value=1.4 Score=44.24 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=49.9
Q ss_pred CCCccEEEeecceeChh----hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccC--CcccccCcCc
Q psy12695 65 DVGTQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH--EAFINVPKLN 138 (369)
Q Consensus 65 ~~~~~~L~l~~n~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~f~~l~~l~ 138 (369)
.++++.|.+++=.+... .+.++++|..||+|+-.|+.+ ...++|.+|+.|.+.+=.+..-.. +.| +|.+|.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh-cccCCC
Confidence 35677888877776544 345788999999999988877 335778888888777655544211 122 355555
Q ss_pred cccccC
Q psy12695 139 LEDFAC 144 (369)
Q Consensus 139 ~~~~~c 144 (369)
..|+..
T Consensus 224 vLDIS~ 229 (699)
T KOG3665|consen 224 VLDISR 229 (699)
T ss_pred eeeccc
Confidence 555443
No 304
>PHA03282 envelope glycoprotein E; Provisional
Probab=76.49 E-value=7.5 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=24.3
Q ss_pred ceeeEEEcccCCCCCEEEEEEEE-eCCceEEEEE
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNI 240 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~~ 240 (369)
++-.|.+.++..+++|.|.|++. |..-.....+
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW~Yt 364 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNGHVHAWGHV 364 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECCeeeeeEEE
Confidence 34479999999999999999985 4443344443
No 305
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=75.17 E-value=1.1 Score=38.93 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=7.2
Q ss_pred ccccccccccccee
Q psy12695 111 LELRELKLSGNPIQ 124 (369)
Q Consensus 111 ~~L~~L~L~~N~l~ 124 (369)
.+|+.|||.+|-++
T Consensus 214 ~~LevLDlqDNtft 227 (388)
T COG5238 214 HSLEVLDLQDNTFT 227 (388)
T ss_pred Ccceeeeccccchh
Confidence 34555555555444
No 306
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=74.44 E-value=0.96 Score=40.18 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=6.3
Q ss_pred HHHhheeeeeecccc
Q psy12695 274 CFVVLCIILLKAKRK 288 (369)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (369)
++++..+++||||++
T Consensus 272 MvIIYLILRYRRKKK 286 (299)
T PF02009_consen 272 MVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHhh
Confidence 333344444444444
No 307
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=73.69 E-value=0.74 Score=33.74 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred eeeeecccccchh
Q psy12695 280 IILLKAKRKRYAD 292 (369)
Q Consensus 280 ~~~~~~~~~~~~~ 292 (369)
-||++|||..++.
T Consensus 43 GCWYckRRSGYk~ 55 (118)
T PF14991_consen 43 GCWYCKRRSGYKT 55 (118)
T ss_dssp -------------
T ss_pred hheeeeecchhhh
Confidence 3455555555543
No 308
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=71.94 E-value=15 Score=33.67 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCeeeccCCeEEEEEEeeC---CCCCeEEEEeCCeEeeec---------ccccccCCcceEEEEe------ecceeeEEE
Q psy12695 153 PDVTAEENENVTLSCRATG---SPVPKIKWIFKEKIIANI---------SSGLANMNKRQYIIKT------INSLSNLTI 214 (369)
Q Consensus 153 ~~~~~~~G~~~~l~C~~~g---~p~p~i~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~L~I 214 (369)
.++.+..|..+.+.|..+- .....+.|+.-+-.+... ..+.+ .....|.+.. ....++|+|
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~-~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDF-AEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeeccc-ccCCceEEEEecccccchhhceEEe
Confidence 4567788999999999864 233468898755322110 00111 1112232221 124578999
Q ss_pred cccCCCCCEEEEEEEEeCCce
Q psy12695 215 VAVTMSDSGIYTCRAKNGAGE 235 (369)
Q Consensus 215 ~~v~~~D~G~Y~C~a~n~~g~ 235 (369)
..+.....|-|.|.|....-.
T Consensus 351 kka~I~N~GCY~~~a~~g~~~ 371 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMGKFK 371 (500)
T ss_pred eeEEEEcCCceEEEEecCcch
Confidence 999999999999999766433
No 309
>KOG2982|consensus
Probab=70.93 E-value=2.8 Score=37.05 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=51.9
Q ss_pred EEEecCCCCCccCC------CCCCCccEEEeecceeChh--hc-cCCcccCeeeccCCcccccC-Ccccccccccccccc
Q psy12695 49 TVLCKAKNFTTIPE------QLDVGTQVLDLSDNFLDRY--TF-RKLINLVELDLSYNQIQFVP-SHILDSILELRELKL 118 (369)
Q Consensus 49 ~~~c~~~~l~~ip~------~~~~~~~~L~l~~n~i~~~--~f-~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L 118 (369)
.++..+|.+..+.+ .+ +.+++|+|+.|++.+. .. ..+.+|+.|-|.+..|..-- .....++|.+++|.+
T Consensus 75 elDL~~N~iSdWseI~~ile~l-P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQL-PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhcccchhccHHHHHHHHhcC-ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 46677777664432 22 3588999999997643 23 46678889988888776422 223467888888888
Q ss_pred cccceecc
Q psy12695 119 SGNPIQKI 126 (369)
Q Consensus 119 ~~N~l~~~ 126 (369)
+.|.+..+
T Consensus 154 S~N~~rq~ 161 (418)
T KOG2982|consen 154 SDNSLRQL 161 (418)
T ss_pred ccchhhhh
Confidence 88866543
No 310
>KOG0196|consensus
Probab=69.48 E-value=48 Score=33.76 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=18.4
Q ss_pred eeEEEcccCCCCCEEEEEEEEeCC--ceEEEEEEEEEee
Q psy12695 210 SNLTIVAVTMSDSGIYTCRAKNGA--GEVFTNISLNVIK 246 (369)
Q Consensus 210 ~~L~I~~v~~~D~G~Y~C~a~n~~--g~~~~~~~l~v~~ 246 (369)
...+|..+++...-.++-.+.... |..+.........
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 356666666655444444444433 4444444444443
No 311
>KOG3665|consensus
Probab=68.92 E-value=2.4 Score=42.69 Aligned_cols=42 Identities=29% Similarity=0.181 Sum_probs=24.6
Q ss_pred ccCCcccCeeeccCCcccccC------Cccccccccccccccccccee
Q psy12695 83 FRKLINLVELDLSYNQIQFVP------SHILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 83 f~~l~~L~~L~Ls~N~l~~i~------~~~f~~l~~L~~L~L~~N~l~ 124 (369)
.-+|++|+.||+|..+-...+ -.....||+||.||.++..+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 345777777777776544322 011235777777777766543
No 312
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=68.52 E-value=41 Score=24.09 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695 150 PITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228 (369)
Q Consensus 150 ~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 228 (369)
..|....+..|+++.+.|.. ..+.| .+.|-..-.. ..+........+.+.+++. | ..-.|.
T Consensus 8 v~P~~~vV~~G~Sv~VNCSt-sC~~p~~~GLET~L~k---------------~~~~~g~~W~~f~LsnV~~-d-s~~~C~ 69 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCST-SCPQPEKIGLETSLSK---------------TELDSGPQWKAFQLSNVTE-D-SSPLCF 69 (91)
T ss_dssp EESSEEEEETTEEEEEEEEE-SSSS-SEEEEESSSEE---------------EEEEEETTEEEEEEEEE-S-C-EEEEEE
T ss_pred EECCccEECCCCCEEEEEcC-CCCCCCcceEEEecCC---------------cccCCCCcEEEEEEEcccc-C-CeEEEE
Confidence 45678889999999999987 44444 3555432111 1111223456778888886 4 567898
Q ss_pred EEeCCceEEEEEEEEEeecC
Q psy12695 229 AKNGAGEVFTNISLNVIKVE 248 (369)
Q Consensus 229 a~n~~g~~~~~~~l~v~~~~ 248 (369)
+.=......+.+.++|...|
T Consensus 70 ~~C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 70 FNCSGEQSSASANITVYKPP 89 (91)
T ss_dssp EEETTEEEEEEEEEEEEB--
T ss_pred EEcCCeEEEeEEeeEEeCCC
Confidence 87554456777888887765
No 313
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=68.37 E-value=16 Score=35.85 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=12.2
Q ss_pred CCcccccchhhHHHHH
Q psy12695 1 MDHDECADDVMMIYEW 16 (369)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (369)
.|+..|.+..||---+
T Consensus 23 ~di~~C~Fsq~~E~~L 38 (684)
T PF12877_consen 23 VDIRSCNFSQRMEQGL 38 (684)
T ss_pred CCcceechHHHHHHHH
Confidence 3788899999876554
No 314
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=67.83 E-value=22 Score=29.12 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=5.2
Q ss_pred ehhhHHHHHHHHH
Q psy12695 261 ASLTTVVTIILTA 273 (369)
Q Consensus 261 ~~~~~~v~~~l~~ 273 (369)
.++++++++++++
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3444444333333
No 315
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=65.30 E-value=3.4 Score=38.63 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=20.0
Q ss_pred CceEeehhhHHHHHHHHHHHHhheeeeeeccc
Q psy12695 256 PVYLVASLTTVVTIILTACFVVLCIILLKAKR 287 (369)
Q Consensus 256 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 287 (369)
+...|+++.+++++++..++.+++|||..|+|
T Consensus 365 stgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred cccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 44555666666566666667777777666654
No 316
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=64.99 E-value=5 Score=36.12 Aligned_cols=6 Identities=33% Similarity=1.054 Sum_probs=4.7
Q ss_pred EEEEEE
Q psy12695 224 IYTCRA 229 (369)
Q Consensus 224 ~Y~C~a 229 (369)
.|.|.+
T Consensus 224 SY~C~s 229 (306)
T PF01299_consen 224 SYKCNS 229 (306)
T ss_pred eeECCC
Confidence 689985
No 317
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=62.53 E-value=2.5 Score=29.90 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=8.6
Q ss_pred CEEEEEEE-EeCCce
Q psy12695 222 SGIYTCRA-KNGAGE 235 (369)
Q Consensus 222 ~G~Y~C~a-~n~~g~ 235 (369)
.|...|.+ .|..|.
T Consensus 16 fg~vhcqa~~nsaGg 30 (98)
T PF07204_consen 16 FGNVHCQASQNSAGG 30 (98)
T ss_pred ccchheeccccCCCC
Confidence 45677886 455554
No 318
>PHA03270 envelope glycoprotein C; Provisional
Probab=61.25 E-value=1.3e+02 Score=28.34 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=12.0
Q ss_pred EEEeeCCCC-CeEEEEeCCeEe
Q psy12695 166 SCRATGSPV-PKIKWIFKEKII 186 (369)
Q Consensus 166 ~C~~~g~p~-p~i~W~~~~~~~ 186 (369)
.|.+.=.|. ..+.|+.++...
T Consensus 340 VCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 340 VCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred EEeccccCCCCEEEEEecCCCC
Confidence 355543332 368998876443
No 319
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=60.66 E-value=70 Score=29.59 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCeeeccCCeE-EEEEEeeCCCCC-eEEEEeCCeE---eee-cccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695 153 PDVTAEENENV-TLSCRATGSPVP-KIKWIFKEKI---IAN-ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT 226 (369)
Q Consensus 153 ~~~~~~~G~~~-~l~C~~~g~p~p-~i~W~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 226 (369)
-++.+..|+.+ .++|.....-.. .+.-++.+.. ..- .+-.....+..-+ ..-....-.+.+.++..+|.|.|.
T Consensus 19 ynIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~Cy-CGd~dkeYsf~~~Nvs~sdEGrYr 97 (500)
T PHA02914 19 YNIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCY-CGDPDKEYSFIEENIGEHEDGDFK 97 (500)
T ss_pred ceEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccc-cCCCcceeEEEecCcccccCCcEE
Confidence 45667777777 899988543333 3555542210 000 0000000000000 000012345778889999999999
Q ss_pred EEEEeC-CceEEEEEEEEEe
Q psy12695 227 CRAKNG-AGEVFTNISLNVI 245 (369)
Q Consensus 227 C~a~n~-~g~~~~~~~l~v~ 245 (369)
|...-. .-.-...+.+.|.
T Consensus 98 CIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 98 CIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred EEEEeCCceeEEEEEEEEEc
Confidence 998533 3333444555543
No 320
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=58.53 E-value=4 Score=35.65 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=53.8
Q ss_pred eEEEecCCCCC-ccCCCC------CCCccEEEeecceeChh-------h---------ccCCcccCeeeccCCcccccCC
Q psy12695 48 ETVLCKAKNFT-TIPEQL------DVGTQVLDLSDNFLDRY-------T---------FRKLINLVELDLSYNQIQFVPS 104 (369)
Q Consensus 48 ~~~~c~~~~l~-~ip~~~------~~~~~~L~l~~n~i~~~-------~---------f~~l~~L~~L~Ls~N~l~~i~~ 104 (369)
.+|+.++|.+. ..|..+ ..++.+|.|+||.+.+. | -.+-+.|+..+...|++..-+.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 57899998876 455433 35789999999995432 1 2245779999999999876543
Q ss_pred c----cccccccccccccccccee
Q psy12695 105 H----ILDSILELRELKLSGNPIQ 124 (369)
Q Consensus 105 ~----~f~~l~~L~~L~L~~N~l~ 124 (369)
. .|..-.+|+.+.+..|-|.
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcC
Confidence 2 2333357888888888764
No 321
>KOG2120|consensus
Probab=56.55 E-value=5.2 Score=35.44 Aligned_cols=69 Identities=26% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCCCccEEEeecce--eChh----hccCCcccCeeeccCCc-ccccCCcccccccccccccccccceecccCCcccc
Q psy12695 63 QLDVGTQVLDLSDNF--LDRY----TFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKLSGNPIQKITHEAFIN 133 (369)
Q Consensus 63 ~~~~~~~~L~l~~n~--i~~~----~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~ 133 (369)
.+...++.|+|++.. +... --...++|..||||+|. |+.=-.-+|..++.|++|.|+.. -.|++..|..
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC--Y~i~p~~~~~ 358 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC--YDIIPETLLE 358 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh--cCCChHHeee
Confidence 345567778887776 2211 12367788888888775 33200112334555666655443 3345544443
No 322
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=55.90 E-value=8.7 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=8.0
Q ss_pred ehhhHHHHHHHHHHHHhhee
Q psy12695 261 ASLTTVVTIILTACFVVLCI 280 (369)
Q Consensus 261 ~~~~~~v~~~l~~~~~~~~~ 280 (369)
+.++.++++++++++..+++
T Consensus 8 ~iialiv~~iiaIvvW~iv~ 27 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIVY 27 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33443444444444444433
No 323
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=54.14 E-value=6 Score=29.79 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=0.0
Q ss_pred heeeeeeccccc
Q psy12695 278 LCIILLKAKRKR 289 (369)
Q Consensus 278 ~~~~~~~~~~~~ 289 (369)
+++|+++|||++
T Consensus 98 ~lv~rrcrrr~~ 109 (129)
T PF12191_consen 98 FLVWRRCRRREK 109 (129)
T ss_dssp ------------
T ss_pred HHHHhhhhcccc
Confidence 333443344333
No 324
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=53.87 E-value=7.1 Score=24.19 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=5.6
Q ss_pred HHHHhheeeeeecc
Q psy12695 273 ACFVVLCIILLKAK 286 (369)
Q Consensus 273 ~~~~~~~~~~~~~~ 286 (369)
++++.+++|.++++
T Consensus 20 ~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 20 VFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHccc
Confidence 33333344444433
No 325
>PHA03112 IL-18 binding protein; Provisional
Probab=51.21 E-value=65 Score=25.10 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=20.8
Q ss_pred eccCCeEEEEEEeeCC-CC-CeEEEEeCC
Q psy12695 157 AEENENVTLSCRATGS-PV-PKIKWIFKE 183 (369)
Q Consensus 157 ~~~G~~~~l~C~~~g~-p~-p~i~W~~~~ 183 (369)
..+|+++.|+|.+.+. |. ..+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4669999999999765 43 458899766
No 326
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=50.78 E-value=50 Score=29.98 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.2
Q ss_pred eEEEEEEeeCCCCC--eEEEEeC
Q psy12695 162 NVTLSCRATGSPVP--KIKWIFK 182 (369)
Q Consensus 162 ~~~l~C~~~g~p~p--~i~W~~~ 182 (369)
.++|+|.|.|.-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996655 4789998
No 327
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.93 E-value=7.8 Score=44.55 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=16.0
Q ss_pred eecce---eChhhccCCcccCeeeccCCccc
Q psy12695 73 LSDNF---LDRYTFRKLINLVELDLSYNQIQ 100 (369)
Q Consensus 73 l~~n~---i~~~~f~~l~~L~~L~Ls~N~l~ 100 (369)
|++|+ |.++.|.+|++|+.|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 44555 23556666666666666666554
No 328
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=49.07 E-value=1e+02 Score=22.34 Aligned_cols=72 Identities=13% Similarity=0.257 Sum_probs=36.4
Q ss_pred eEEEEEEe-eCCCCCeEEEEeC--CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695 162 NVTLSCRA-TGSPVPKIKWIFK--EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 162 ~~~l~C~~-~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 238 (369)
.+.-.|.+ .|.|+..|+|.-+ |.. ...... .....+.+ .+.+........|.-.-+|.+....-....
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~---~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~ 92 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-EFQEIR---NQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRNDRFTD 92 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-eeeeeC---CCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEeccccccc
Confidence 34557984 8999999999743 221 100000 00111111 233444444555555788988765433333
Q ss_pred EEEE
Q psy12695 239 NISL 242 (369)
Q Consensus 239 ~~~l 242 (369)
.+.|
T Consensus 93 ~~~L 96 (98)
T cd05890 93 SVTL 96 (98)
T ss_pred cEEe
Confidence 4443
No 329
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=48.59 E-value=25 Score=31.23 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=8.3
Q ss_pred CcCcCCCCCCCeec
Q psy12695 29 LQVFAECPSTCECK 42 (369)
Q Consensus 29 ~~~~~~cp~~C~c~ 42 (369)
...+..||..=+|-
T Consensus 36 ~p~~~~CP~slDCA 49 (341)
T PF06809_consen 36 RPDAAKCPGSLDCA 49 (341)
T ss_pred CCCccCCCchhhhh
Confidence 34446777765665
No 330
>PF15102 TMEM154: TMEM154 protein family
Probab=47.48 E-value=21 Score=27.90 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHhheeeeeeccccc
Q psy12695 264 TTVVTIILTACFVVLCIILLKAKRKR 289 (369)
Q Consensus 264 ~~~v~~~l~~~~~~~~~~~~~~~~~~ 289 (369)
+.++++++.+++++++...+|.|+..
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~~~ 91 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQEP 91 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCCCC
Confidence 33334445555555555666666653
No 331
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=46.29 E-value=1e+02 Score=21.63 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=33.3
Q ss_pred eEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237 (369)
Q Consensus 162 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 237 (369)
...|...+.+. ...+.|+.++..+..... ...+.+ .....|.|+-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----------------~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----------------GHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-----------------CCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 45556666666 459999999987732111 111222 23467888888877777644
No 332
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=45.47 E-value=1.7e+02 Score=23.84 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=36.2
Q ss_pred EEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEee---cceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695 166 SCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI---NSLSNLTIVAVTMSDSGIYTCRAKNGA 233 (369)
Q Consensus 166 ~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 233 (369)
.|..+ -...|.++|......+.+..-... .+..+.. --.+...|......|+-.|.|.+....
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqt-----wy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQT-----WYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccce-----eecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 46664 355789999887666554332111 1111111 113456677777788888999876543
No 333
>PHA03265 envelope glycoprotein D; Provisional
Probab=45.35 E-value=7.1 Score=34.97 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=6.6
Q ss_pred Hhheeeeeeccccc
Q psy12695 276 VVLCIILLKAKRKR 289 (369)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (369)
++++++|+|||..+
T Consensus 366 ~il~~~~rr~k~~~ 379 (402)
T PHA03265 366 VILYVCLRRKKELK 379 (402)
T ss_pred HHHHHHhhhhhhhh
Confidence 34445555544433
No 334
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=44.01 E-value=65 Score=21.24 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.1
Q ss_pred eccCCeEEEEEEeeCCCCCeEEEEe
Q psy12695 157 AEENENVTLSCRATGSPVPKIKWIF 181 (369)
Q Consensus 157 ~~~G~~~~l~C~~~g~p~p~i~W~~ 181 (369)
+..|++++|. |.+...+.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567777763 55556799984
No 335
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=41.72 E-value=21 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=9.2
Q ss_pred EeehhhHHHHHHHHHHHHhheeee
Q psy12695 259 LVASLTTVVTIILTACFVVLCIIL 282 (369)
Q Consensus 259 ~~~~~~~~v~~~l~~~~~~~~~~~ 282 (369)
+++.++.+.++++++++...+++|
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~ 125 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCH 125 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhh
Confidence 344444442333333333333333
No 336
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=41.09 E-value=34 Score=25.06 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=4.3
Q ss_pred heeeeeecccc
Q psy12695 278 LCIILLKAKRK 288 (369)
Q Consensus 278 ~~~~~~~~~~~ 288 (369)
.+++.++|+|.
T Consensus 37 ~c~~~~~r~r~ 47 (102)
T PF11669_consen 37 CCACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 337
>PTZ00046 rifin; Provisional
Probab=39.98 E-value=13 Score=33.88 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=5.3
Q ss_pred Hhheeeeeecccc
Q psy12695 276 VVLCIILLKAKRK 288 (369)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (369)
++..+.+||||++
T Consensus 333 IIYLILRYRRKKK 345 (358)
T PTZ00046 333 IIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHhhhcch
Confidence 3333334444444
No 338
>KOG2120|consensus
Probab=39.21 E-value=4 Score=36.17 Aligned_cols=53 Identities=25% Similarity=0.184 Sum_probs=32.5
Q ss_pred ccEEEeecceeChhh----ccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695 68 TQVLDLSDNFLDRYT----FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120 (369)
Q Consensus 68 ~~~L~l~~n~i~~~~----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 120 (369)
++.||||+-.|+... ++...+|+.|.|-+|+|..=-......-.+|+.|+|++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 677777777777543 34556777777777777642222333345677777764
No 339
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=38.38 E-value=36 Score=20.34 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=7.2
Q ss_pred CCCCCCccEEEe
Q psy12695 62 EQLDVGTQVLDL 73 (369)
Q Consensus 62 ~~~~~~~~~L~l 73 (369)
..+|.+++.|.|
T Consensus 8 ~~iP~~l~~L~~ 19 (44)
T PF05725_consen 8 GSIPSSLKSLIF 19 (44)
T ss_pred CeeCCCCeEEEE
Confidence 345666666666
No 340
>PHA03283 envelope glycoprotein E; Provisional
Probab=38.10 E-value=95 Score=29.88 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=32.3
Q ss_pred ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246 (369)
Q Consensus 208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~ 246 (369)
..+.|.|.+++.+++|.|+=...+..+.....+.|+|..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 356899999999999999999988777666667777766
No 341
>KOG3763|consensus
Probab=37.68 E-value=14 Score=35.58 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=28.5
Q ss_pred cCCcccCeeeccCCcccccCCccccc----cccccccccccc
Q psy12695 84 RKLINLVELDLSYNQIQFVPSHILDS----ILELRELKLSGN 121 (369)
Q Consensus 84 ~~l~~L~~L~Ls~N~l~~i~~~~f~~----l~~L~~L~L~~N 121 (369)
.+.+.+..|.|++|+|..|+. +.. -++|..|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhh--hhHHHHhcchhheeecccc
Confidence 356778899999999988743 333 368999999999
No 342
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=37.53 E-value=29 Score=30.81 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=11.4
Q ss_pred CcccCeeeccCCcccccCC
Q psy12695 86 LINLVELDLSYNQIQFVPS 104 (369)
Q Consensus 86 l~~L~~L~Ls~N~l~~i~~ 104 (369)
-..|...|+.++..+.++.
T Consensus 63 ~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 63 SSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred ceeEEEEecCCCeeeecCC
Confidence 3456666776666655544
No 343
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=37.46 E-value=86 Score=23.14 Aligned_cols=6 Identities=33% Similarity=1.104 Sum_probs=2.5
Q ss_pred EEEEEe
Q psy12695 164 TLSCRA 169 (369)
Q Consensus 164 ~l~C~~ 169 (369)
.|.|..
T Consensus 19 ~l~ckc 24 (150)
T PF06084_consen 19 HLTCKC 24 (150)
T ss_pred eEEEec
Confidence 344443
No 344
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=37.29 E-value=15 Score=33.37 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=5.4
Q ss_pred Hhheeeeeecccc
Q psy12695 276 VVLCIILLKAKRK 288 (369)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (369)
++..+.+||||++
T Consensus 328 IIYLILRYRRKKK 340 (353)
T TIGR01477 328 IIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHhhhcch
Confidence 3333344444444
No 345
>KOG3864|consensus
Probab=36.85 E-value=8.7 Score=32.00 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=26.0
Q ss_pred ccEEEeecceeChhhccCCcc---cCeeeccCCc------ccccCCcccccccccccccccccc
Q psy12695 68 TQVLDLSDNFLDRYTFRKLIN---LVELDLSYNQ------IQFVPSHILDSILELRELKLSGNP 122 (369)
Q Consensus 68 ~~~L~l~~n~i~~~~f~~l~~---L~~L~Ls~N~------l~~i~~~~f~~l~~L~~L~L~~N~ 122 (369)
++.+|-++..|...-|.+|.. |+.|.|.+.. |..|.. ..++|+.|+|++++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCP 162 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCC
Confidence 566676776666544444433 3333333322 222222 34577777777663
No 346
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=36.60 E-value=16 Score=25.08 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=6.2
Q ss_pred HHHhheeeeeecccc
Q psy12695 274 CFVVLCIILLKAKRK 288 (369)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (369)
++|+..+|++-|.++
T Consensus 48 LLIv~~vy~car~r~ 62 (79)
T PF07213_consen 48 LLIVLVVYYCARPRR 62 (79)
T ss_pred HHHHHHHHhhccccc
Confidence 344444444443333
No 347
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=35.22 E-value=34 Score=31.13 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=18.0
Q ss_pred ceEeehhhHHHHHHHHHHHHhheeeeeecccccch
Q psy12695 257 VYLVASLTTVVTIILTACFVVLCIILLKAKRKRYA 291 (369)
Q Consensus 257 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 291 (369)
+.+|+.++++..++++.+++++|--+-|-|+.+..
T Consensus 15 ivlwgsLaav~~f~lis~LifLCsSC~reKK~~~~ 49 (428)
T PF15347_consen 15 IVLWGSLAAVTTFLLISFLIFLCSSCDREKKPKQQ 49 (428)
T ss_pred EEeehHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 34455555555555555565555555444444433
No 348
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=35.20 E-value=51 Score=19.97 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=8.7
Q ss_pred CcCCCCCCCeec
Q psy12695 31 VFAECPSTCECK 42 (369)
Q Consensus 31 ~~~~cp~~C~c~ 42 (369)
.-+.||..|-|.
T Consensus 23 wCQcCp~~ccCY 34 (49)
T PF05624_consen 23 WCQCCPHTCCCY 34 (49)
T ss_pred HHhcCccceeEE
Confidence 356788888776
No 349
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.51 E-value=30 Score=17.81 Aligned_cols=12 Identities=58% Similarity=0.443 Sum_probs=8.7
Q ss_pred cccCeeeccCCc
Q psy12695 87 INLVELDLSYNQ 98 (369)
Q Consensus 87 ~~L~~L~Ls~N~ 98 (369)
++|+.|+|++..
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567788887764
No 350
>KOG3637|consensus
Probab=32.28 E-value=52 Score=35.05 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=6.9
Q ss_pred EeehhhHHHHHHHHHHHH
Q psy12695 259 LVASLTTVVTIILTACFV 276 (369)
Q Consensus 259 ~~~~~~~~v~~~l~~~~~ 276 (369)
++++++++++.++++.++
T Consensus 978 ~wiIi~svl~GLLlL~ll 995 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALL 995 (1030)
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 333343333333333333
No 351
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.23 E-value=66 Score=25.89 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.1
Q ss_pred CCCCCCC
Q psy12695 330 VPLVPPH 336 (369)
Q Consensus 330 ~~~~~~~ 336 (369)
+.+...+
T Consensus 154 TvFd~~~ 160 (163)
T PF06679_consen 154 TVFDANH 160 (163)
T ss_pred ceeeecc
Confidence 4444443
No 352
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=30.94 E-value=24 Score=18.50 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=8.8
Q ss_pred ccCCcccCeeeccC
Q psy12695 83 FRKLINLVELDLSY 96 (369)
Q Consensus 83 f~~l~~L~~L~Ls~ 96 (369)
|.+..+|..|||++
T Consensus 2 F~~~~~~~~ldls~ 15 (26)
T TIGR02167 2 FSGCSSLTSLDVSN 15 (26)
T ss_pred CCcccccccccccc
Confidence 56666666666654
No 353
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=30.18 E-value=47 Score=26.52 Aligned_cols=12 Identities=33% Similarity=1.187 Sum_probs=6.7
Q ss_pred CcCCCCC-CCeec
Q psy12695 31 VFAECPS-TCECK 42 (369)
Q Consensus 31 ~~~~cp~-~C~c~ 42 (369)
....||+ .|+|+
T Consensus 40 s~~sCppC~CDCs 52 (176)
T PF06364_consen 40 SSSSCPPCDCDCS 52 (176)
T ss_pred cCCCCCCCCCCCC
Confidence 4568876 24443
No 354
>PHA03282 envelope glycoprotein E; Provisional
Probab=30.00 E-value=1.2e+02 Score=28.90 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=25.0
Q ss_pred eeeEEEcccCCCCCEEEEEEEEeCCce--EEEEEEEEEe
Q psy12695 209 LSNLTIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNVI 245 (369)
Q Consensus 209 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~ 245 (369)
+.+|.|.+++.+|+|.|+-.+...... ..+.+.+.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 457999999999999999886433322 2333445543
No 355
>KOG1226|consensus
Probab=29.14 E-value=95 Score=31.39 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=4.7
Q ss_pred CCCEEEEEEEE
Q psy12695 220 SDSGIYTCRAK 230 (369)
Q Consensus 220 ~D~G~Y~C~a~ 230 (369)
.+.+.-.|...
T Consensus 668 ~~~~~~~C~~~ 678 (783)
T KOG1226|consen 668 LDDEVVHCKER 678 (783)
T ss_pred cCCccceeeee
Confidence 33344445444
No 356
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.69 E-value=20 Score=32.52 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhheeeeeecccccchhh
Q psy12695 266 VVTIILTACFVVLCIILLKAKRKRYADV 293 (369)
Q Consensus 266 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (369)
-++++++++++.+++|..-|-||+.+..
T Consensus 315 SiIAIvvIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 315 SIIAILIIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 3344444555666666666777765443
No 357
>PTZ00046 rifin; Provisional
Probab=28.55 E-value=21 Score=32.59 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhheeeeeecccccchhhh
Q psy12695 266 VVTIILTACFVVLCIILLKAKRKRYADVN 294 (369)
Q Consensus 266 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 294 (369)
-++.+++++++.+++|..-|-||+.+..+
T Consensus 320 SiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 33444445556666666667777655433
No 358
>PHA03376 BARF1; Provisional
Probab=28.46 E-value=46 Score=27.48 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=21.3
Q ss_pred CCeEEEEEEeeCCCCCeEEEEeCCeE
Q psy12695 160 NENVTLSCRATGSPVPKIKWIFKEKI 185 (369)
Q Consensus 160 G~~~~l~C~~~g~p~p~i~W~~~~~~ 185 (369)
-+..++.|.+-|.|.|.+.|+-+.+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCC
Confidence 45668899988999999999976543
No 359
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=28.28 E-value=2e+02 Score=19.67 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.0
Q ss_pred EeehhhHH
Q psy12695 259 LVASLTTV 266 (369)
Q Consensus 259 ~~~~~~~~ 266 (369)
.++.++-.
T Consensus 31 avaVviPl 38 (74)
T PF11857_consen 31 AVAVVIPL 38 (74)
T ss_pred EEEEeHHH
Confidence 33333333
No 360
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=27.77 E-value=70 Score=29.36 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=6.8
Q ss_pred HHHHhheeeeeeccc
Q psy12695 273 ACFVVLCIILLKAKR 287 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~ 287 (369)
+++..++++++|+|+
T Consensus 334 li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 334 LILGGLYVCLRRRRK 348 (350)
T ss_pred HHHhhheEEEecccc
Confidence 344444555544443
No 361
>KOG1219|consensus
Probab=27.15 E-value=71 Score=36.95 Aligned_cols=6 Identities=17% Similarity=0.849 Sum_probs=2.4
Q ss_pred EEEEEE
Q psy12695 224 IYTCRA 229 (369)
Q Consensus 224 ~Y~C~a 229 (369)
.|.|-.
T Consensus 3962 sf~Cnc 3967 (4289)
T KOG1219|consen 3962 SFHCNC 3967 (4289)
T ss_pred ceEecc
Confidence 344433
No 362
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=26.47 E-value=31 Score=22.98 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=7.8
Q ss_pred CCCCcccccCCCC
Q psy12695 339 PRNEYSSVPLSDT 351 (369)
Q Consensus 339 ~~~e~~~~~~~~~ 351 (369)
+..+|+.+..+.|
T Consensus 61 ~stDYAcIa~~kp 73 (74)
T PF05083_consen 61 PSTDYACIAKNKP 73 (74)
T ss_pred CCcCeeeeeccCC
Confidence 5566676665544
No 363
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.31 E-value=20 Score=27.27 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=6.4
Q ss_pred HHHHhheeeeeeccccc
Q psy12695 273 ACFVVLCIILLKAKRKR 289 (369)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (369)
++++.+++.+++||...
T Consensus 81 Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 81 ILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccCCC
Confidence 34444555666666654
No 364
>COG5475 Uncharacterized small protein [Function unknown]
Probab=26.15 E-value=1.6e+02 Score=18.73 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=16.9
Q ss_pred eEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFT 238 (369)
Q Consensus 211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 238 (369)
.+++..... .|.|.|.-.+..|....
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGVKRE 44 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCcccc
Confidence 344444332 39999999998885443
No 365
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=25.94 E-value=35 Score=28.05 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=11.1
Q ss_pred ehhhHHHHHHHHHHHHhheeeeee
Q psy12695 261 ASLTTVVTIILTACFVVLCIILLK 284 (369)
Q Consensus 261 ~~~~~~v~~~l~~~~~~~~~~~~~ 284 (369)
+..++++++++.+..++++.|.++
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhc
Confidence 344445445444444444444443
No 366
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=25.17 E-value=35 Score=28.21 Aligned_cols=7 Identities=14% Similarity=-0.088 Sum_probs=2.6
Q ss_pred ccCCCCC
Q psy12695 59 TIPEQLD 65 (369)
Q Consensus 59 ~ip~~~~ 65 (369)
.-|-+.|
T Consensus 21 ~~PFC~P 27 (189)
T PF14610_consen 21 SEPFCTP 27 (189)
T ss_pred CCCcccC
Confidence 3333333
No 367
>PF07473 Toxin_11: Spasmodic peptide gm9a; InterPro: IPR010012 This family consists of several spasmodic peptide gm9a sequences. Conotoxin gm9a is a putative 27-residue polypeptide encoded by Conus gloriamaris and is known to be a homologue of the 'spasmodic peptide', tx9a, isolated from the venom of the mollusk-hunting cone shell Conus textile []. Upon injection of this venom component, normal mice are converted into behavioural phenocopies of a well-known mutant, the spasmodic mouse [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1IXT_A.
Probab=24.87 E-value=50 Score=17.49 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=10.1
Q ss_pred cCcCCCCCCCeecc
Q psy12695 30 QVFAECPSTCECKW 43 (369)
Q Consensus 30 ~~~~~cp~~C~c~~ 43 (369)
+.-+.||+.|.|-.
T Consensus 7 qshs~CashC~C~~ 20 (28)
T PF07473_consen 7 QSHSKCASHCFCHP 20 (28)
T ss_dssp SSSS-SSSSEEEET
T ss_pred hhhccCccceEEcc
Confidence 34568999999974
No 368
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.46 E-value=2.1e+02 Score=27.29 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=18.7
Q ss_pred eEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245 (369)
Q Consensus 211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~ 245 (369)
.++|.-....-+|.|.-..+...-..+...+++|.
T Consensus 447 ~ltI~vP~~a~aGdY~i~i~~ksDq~s~e~tlrV~ 481 (513)
T COG1470 447 SLTITVPEDAGAGDYRITITAKSDQASSEDTLRVV 481 (513)
T ss_pred EEEEEcCCCCCCCcEEEEEEEeeccccccceEEEE
Confidence 46666666666777776654433333333344443
No 369
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.00 E-value=62 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=19.1
Q ss_pred EeehhhHHHHHHHHHHHHhheeeeeecccccchh
Q psy12695 259 LVASLTTVVTIILTACFVVLCIILLKAKRKRYAD 292 (369)
Q Consensus 259 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (369)
+++|++.+|.+. ++++++.++|+.++|++..+
T Consensus 50 IVIGvVVGVGg~--ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 50 IVIGVVVGVGGP--ILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred EEEEEEecccHH--HHHHHHHhheeEEEecccCc
Confidence 444444443332 23456788888888888653
No 370
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.47 E-value=86 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=11.8
Q ss_pred CceEeehhhHHHHHHHHHHHHhheeeeee
Q psy12695 256 PVYLVASLTTVVTIILTACFVVLCIILLK 284 (369)
Q Consensus 256 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 284 (369)
+..++..++++..+++++--.++++|+.+
T Consensus 12 PGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 12 PGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred CCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444344333333334444433
No 371
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=21.91 E-value=94 Score=16.72 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=13.1
Q ss_pred CcCcCCCCCCCeecccCCceEEEecCCC
Q psy12695 29 LQVFAECPSTCECKWKGGKETVLCKAKN 56 (369)
Q Consensus 29 ~~~~~~cp~~C~c~~~~~~~~~~c~~~~ 56 (369)
.+-.+.||+.| |- -+.|+..+
T Consensus 3 sgr~srcpp~c-cm------gl~c~rgn 23 (33)
T PF08094_consen 3 SGRGSRCPPQC-CM------GLRCGRGN 23 (33)
T ss_dssp B-TTSSSSSSB--T------TEEECSSS
T ss_pred cCCCCCCCchh-ee------eeeecCCC
Confidence 35577899998 54 26776554
No 372
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=21.08 E-value=28 Score=25.80 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=1.2
Q ss_pred hhhHHHHHHHHHHHHhheeeeeecccccchhh
Q psy12695 262 SLTTVVTIILTACFVVLCIILLKAKRKRYADV 293 (369)
Q Consensus 262 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 293 (369)
+++..++++.+++++...+|.+|..-|...+.
T Consensus 28 GIGiL~VILgiLLliGCWYckRRSGYk~L~~k 59 (118)
T PF14991_consen 28 GIGILIVILGILLLIGCWYCKRRSGYKTLRDK 59 (118)
T ss_dssp SSS-----------------------------
T ss_pred cceeHHHHHHHHHHHhheeeeecchhhhhhhc
Confidence 34444445555667778888888777765543
No 373
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.79 E-value=61 Score=21.66 Aligned_cols=8 Identities=0% Similarity=0.019 Sum_probs=3.1
Q ss_pred eeeeeccc
Q psy12695 280 IILLKAKR 287 (369)
Q Consensus 280 ~~~~~~~~ 287 (369)
+|+++|+.
T Consensus 53 ~YFK~k~d 60 (68)
T PF04971_consen 53 LYFKIKED 60 (68)
T ss_pred hhhhhhHh
Confidence 33433333
No 374
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=54 Score=21.37 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=7.6
Q ss_pred HHHHHHhheeeeeecccc
Q psy12695 271 LTACFVVLCIILLKAKRK 288 (369)
Q Consensus 271 l~~~~~~~~~~~~~~~~~ 288 (369)
+.++++..+++.+++++|
T Consensus 18 ~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHhcccch
Confidence 334444444444444444
Done!