RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12695
(369 letters)
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 126 bits (316), Expect = 3e-33
Identities = 42/285 (14%), Positives = 77/285 (27%), Gaps = 65/285 (22%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQV--LDLSDN----FLDRYTFRKLIN 88
CP C G + C L + L + + L+ R L
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57
Query: 89 LVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVP--KLNLED----- 141
L L + + ++FV L L LS N ++ ++ + + +L L
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117
Query: 142 -------------------------------------FACSPNIRPITPDVTAEENENVT 164
P ++ P+ + + ++V
Sbjct: 118 SCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVL 177
Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSG 223
L C+ G + + WI E + LT+ VT +
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQSATVMK-----------SGGLPSLGLTLANVTSDLNRK 226
Query: 224 IYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
TC A+N G ++ +NV + + V
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD 271
Score = 75.9 bits (186), Expect = 1e-15
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ TA E + + G P P ++W+F ++ + +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE--TSFIFTEFLEPAANE 304
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
L + T ++G YT A N G+ +I +
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 118 bits (298), Expect = 1e-30
Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 71/235 (30%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHI---LDSILELRELKLSGNP 122
+VL L +N +DR F + L +L LS NQI P + + + +L L LS N
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174
Query: 123 IQKITHEAFINVPK---------------------------------------------- 136
++K+ +P
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHS 234
Query: 137 ------LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANIS 190
+L+ F CS A + +T+ C + K+ + + +
Sbjct: 235 KKLHNIFSLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG 291
Query: 191 SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S ++ +L V + D G+YTC A ++ L V
Sbjct: 292 SN------GSVSVRN----GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336
Score = 107 bits (269), Expect = 2e-26
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---------------- 78
CP+ C C + C + +P+ L T +LDLS N L
Sbjct: 12 CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67
Query: 79 ------------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
F + NL LDLS N + + + + L L L N I +
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127
Query: 127 THEAFINVPKL 137
AF ++ +L
Sbjct: 128 DRNAFEDMAQL 138
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 114 bits (286), Expect = 2e-28
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 41/207 (19%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ- 124
+ L + ++ ++R F L +LVEL+L++N + +P + + L EL L NP
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304
Query: 125 -------------KITHEAFIN-------------VPKLNLEDFAC-SPNIRPITPDVTA 157
I + + +++ F C +P I D+
Sbjct: 305 DCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNI 364
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E L CR P+ +KW+ + + +S + ++ + L V
Sbjct: 365 SEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRI--------SVLNDGTLNFSHV 414
Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNV 244
+SD+G+YTC N AG + LNV
Sbjct: 415 LLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 104 bits (262), Expect = 4e-25
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 33/177 (18%)
Query: 10 VMMIYEWRVYIMVLVCTGCLQVFAE----CPSTCECKWKGGKETVLCKAKNFTTIPEQLD 65
+++ + + + ++C + CPS C C + V+C + + +P+ +
Sbjct: 17 ILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIP 74
Query: 66 VGTQVLDLSDNF---------------------------LDRYTFRKLINLVELDLSYNQ 98
T+ L+L +N ++ F L +L L+L N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 99 IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDV 155
+ +PS + + +LREL L NPI+ I AF VP L D + I+
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Score = 71.7 bits (176), Expect = 5e-14
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 69 QVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L+L + L+ L EL++S N + + L++L + + + I
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258
Query: 128 HEAFINVPKL 137
AF + L
Sbjct: 259 RNAFDGLASL 268
Score = 66.3 bits (162), Expect = 4e-12
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
LDL + ++ F L NL L+L I+ +P+ L ++ L EL++SGN
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFP 231
Query: 125 KITHEAFINVPKL 137
+I +F + L
Sbjct: 232 EIRPGSFHGLSSL 244
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 113 bits (284), Expect = 4e-28
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 40/208 (19%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP--- 122
Q L + + ++R F L +LVE++L++N + +P + + L + L NP
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
Query: 123 ----------IQKITHEAFINVPK--------------LNLEDFAC-SPNIRPITPDVTA 157
I+ + + L+ F C +P I D+
Sbjct: 294 NCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNV 353
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
E L CRA+ + + WI +G + + + S L V
Sbjct: 354 TEGMAAELKCRAST-SLTSVSWI--------TPNGTVMTHGAYKVRIAVLSDGTLNFTNV 404
Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVI 245
T+ D+G+YTC N G + +LNV
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 103 bits (259), Expect = 9e-25
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 18 VYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
+ ++++ C CPS C C + V+C KN +P+ + T++L+L +N
Sbjct: 18 LSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHENQ 75
Query: 78 ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
+ +F+ L +L L LS N I+ + + + L L+L N + I + AF+ +
Sbjct: 76 IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135
Query: 135 PKL 137
KL
Sbjct: 136 SKL 138
Score = 73.2 bits (180), Expect = 2e-14
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 69 QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L+L+ L LI L ELDLS N + + ++ L++L + + IQ I
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 128 HEAFINVPKL 137
AF N+ L
Sbjct: 248 RNAFDNLQSL 257
Score = 65.5 bits (160), Expect = 7e-12
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+ LDL + ++ F L NL L+L+ ++ +P+ L +++L EL LSGN +
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLS 220
Query: 125 KITHEAFINVPKL 137
I +F + L
Sbjct: 221 AIRPGSFQGLMHL 233
Score = 58.2 bits (141), Expect = 2e-09
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLS-YNQIQFVPSHILD 108
TTIP V + L L +N + Y F ++ +L LDL ++ ++ +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 109 SILELRELKLSGNPIQKITHEAFINVPKL 137
+ LR L L+ +++I + KL
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKL 209
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 110 bits (278), Expect = 3e-27
Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 45/211 (21%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ- 124
Q + L ++ Y FR L L L++S NQ+ + + S+ L L L NP+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334
Query: 125 ---------------------------KITHEAFINVP-KLNLEDFACS-PNIRPITP-D 154
+ + F + P L F C IR
Sbjct: 335 DCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQ 394
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
V +E V CRA G P P I W+ ++ +++ S+G T+ L
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRL----------TVFPDGTLE 444
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + D+G Y C A N G L+V
Sbjct: 445 VRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 99.8 bits (249), Expect = 3e-23
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
CP CEC + VLC K F +PE + T++LDL N L++ F +L E
Sbjct: 3 CPPRCECSAQDR--AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L+L+ N + V +++ LR L L N ++ I F + L
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Score = 74.4 bits (183), Expect = 1e-14
Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+ + + + L++ DN ++ F L +L +L L + +P+ L
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPD 154
+ L L+L I I +F + +L + + + P + +TP+
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Score = 69.7 bits (171), Expect = 3e-13
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L ++ + R L+ L L+LSYN I + +L +L L+E++L G +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 126 ITHEAFINVPKL 137
+ AF + L
Sbjct: 287 VEPYAFRGLNYL 298
Score = 62.8 bits (153), Expect = 5e-11
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+VL++S + L NL L +++ + VP + ++ LR L LS NPI
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Query: 125 KITHEAFINVPKL 137
I + +L
Sbjct: 262 TIEGSMLHELLRL 274
Score = 61.7 bits (150), Expect = 1e-10
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
N T+IP + VL L + Y+F++L L L++S+ +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
L L L ++ + + + A ++ L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYL 250
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 92.4 bits (230), Expect = 2e-23
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + D++ +E + +T++C TG P P++ W + I + G ++ I+
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG-------RFHIEN 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
+ L+ L I+ V D G+YT N G +++++ +
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 91.7 bits (228), Expect = 4e-23
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D+T +E + + C+ +G P P + W K + + ++ N + +L
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP--------DSAHKMLVRENGVHSLI 69
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I VT D+GIYTC A N AG+ ++ L V E+
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 89.7 bits (223), Expect = 2e-22
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+++ +E + + +G P P + W + + + + +I + L +L
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQS--------DDLHKMIVSEKGLHSLI 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
V SD+G Y C AKN AGE + L+V+ E
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 94.7 bits (236), Expect = 2e-22
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
CP C C + K T C + +P + +Q + L N + +FR NL
Sbjct: 2 CPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNP-IQKITHEAFINVPKL 137
L L N + + + + L +L LS N ++ + F + +L
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107
Score = 71.9 bits (177), Expect = 2e-14
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L N + FR L +L L L N++ V H + L L L N +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 126 ITHEAFINVPKL---NLED--FACSPNIRPITPDVTAEENENVTLSC 167
+ EA + L L D + C RP+ + + + C
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262
Score = 70.4 bits (173), Expect = 6e-14
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
Q L L DN L TFR L NL L L N+I VP + L L L N +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 126 ITHEAFINVPKL 137
+ AF ++ +L
Sbjct: 192 VHPHAFRDLGRL 203
Score = 69.3 bits (170), Expect = 1e-13
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L L FR L L L L N +Q +P + L L L GN I
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 126 ITHEAFINVPKL 137
+ AF + L
Sbjct: 168 VPERAFRGLHSL 179
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 88.1 bits (219), Expect = 6e-22
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D + E ++V +S R G P P + W+ + + ++R++ + L L
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--------RPDQRRFAEEAEGGLCRLR 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I+A D+G YTC+A N G L V
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 91.5 bits (227), Expect = 7e-22
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ + VT +E + + L+C G P P++ W+ EK +A +
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ--------TDHCNLKFE 169
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ TI V+ +DSG Y KN G ++ +++V
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 65.7 bits (160), Expect = 9e-13
Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 10/107 (9%)
Query: 152 TPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
T E + L K+ W I + R
Sbjct: 9 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--------SDR-VKTGVTGEQI 59
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
L I T +D G Y +G + L+ + A A+ +
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 89.3 bits (221), Expect = 8e-22
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN----ISSGLANMNKRQYIIKTINSL 209
+V L C A GSPVP+I+W F+ + + + G + ++
Sbjct: 30 SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
S ++I + D+G Y CRA N + V V
Sbjct: 90 STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 87.4 bits (217), Expect = 1e-21
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+T E E+ SC G PVP + W+ K ++++ + R + + T S
Sbjct: 23 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--------SAR-HQVTTTKYKSTFE 73
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
I +V SD G Y+ +N G+ +L + K
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 93.3 bits (232), Expect = 2e-21
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 16 WRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSD 75
W V+++ ++ + + + ++ C + + +IP L + LDLS+
Sbjct: 6 WMVWVLGVIISLSKEE-SSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSN 61
Query: 76 N---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132
N ++ ++ +NL L L+ N I + S+ L L LS N + ++ F
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 133 NVPKL 137
+ L
Sbjct: 122 PLSSL 126
Score = 57.4 bits (139), Expect = 2e-09
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 69 QVLDLSDNFL----DRYTFRKLINLVELDLSYN-QIQFVPSHILDSILELRELKLSGNPI 123
L+L N + F L L L + + + L EL++ + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
Query: 124 QKITHEAFINVPKLN 138
Q ++ ++ ++
Sbjct: 187 QSYEPKSLKSIQNVS 201
Score = 57.1 bits (138), Expect = 3e-09
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDNF----LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
Q+L + + + R F L L EL++ + +Q L SI + L L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211
Query: 125 KITHEAFINVPKL 137
+ +
Sbjct: 212 LLLEIFVDVTSSV 224
Score = 55.9 bits (135), Expect = 7e-09
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ L++ + L Y + + + N+ L L Q + +D + L+L +
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Query: 126 ITHEAFINVPKLNL 139
+L
Sbjct: 237 FHFSELSTGETNSL 250
Score = 54.0 bits (130), Expect = 2e-08
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 69 QVLDLSDNFLDRY--TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+ + ++D L + ++ L+EL+ S NQ++ VP I D + L+++ L NP
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
Score = 51.3 bits (123), Expect = 2e-07
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 19/124 (15%)
Query: 69 QVLDLSDNFLDR-----------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK 117
+ L+L D LD + K + ++ + V +L+ I L EL+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELE 283
Query: 118 LSGNPIQKITHEAFINVPKL---NLED--FACSPNIRPITPD--VTAEENENVTLSCRAT 170
S N ++ + F + L L + CS + E + C +
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343
Query: 171 GSPV 174
G PV
Sbjct: 344 GKPV 347
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 95.0 bits (236), Expect = 2e-21
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + A + + P IR + T E +V L C A G+P P+I W
Sbjct: 410 NDRESAEASAELKL-----GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
K IAN QY+ + +S L I +V +D G+Y C AK+ G +
Sbjct: 465 LDGKKIANNDR----YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA 520
Query: 241 SLNVIKVETAVAQPDPVYLVASLTTVVT 268
LNV + Q + +VA T +VT
Sbjct: 521 KLNV-YGLPYIRQMEKKAIVAGETLIVT 547
Score = 77.3 bits (190), Expect = 1e-15
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
+++ V + T + + L C A G PVP +W +K
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW-YKF 285
Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
G + L I + DSG Y C N G L
Sbjct: 286 ------IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339
Query: 244 V 244
V
Sbjct: 340 V 340
Score = 77.3 bits (190), Expect = 1e-15
Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + E + V + + P T + +C+ TG+P+ + W+
Sbjct: 327 NSVGGESVETVLTVTA--------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
K I +S S L I +V D G+Y C +N +
Sbjct: 379 KDGKAI-------------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419
Query: 241 SLNV 244
L +
Sbjct: 420 ELKL 423
Score = 73.8 bits (181), Expect = 2e-14
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYII 203
P I P + A+ + +TL C G +P I W + I+ +
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE--------DLGITTS 670
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ S LTI AV S +G +TC A+N AG LNV
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Score = 72.7 bits (178), Expect = 5e-14
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P D + + + C+A G P P++ W +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT------PGEYKDLKKSDNI 768
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
L + + ++ G Y C A NG G + + + ++
Sbjct: 769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 71.9 bits (176), Expect = 8e-14
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 23/142 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
+ + H A +NV L P IR + E + ++C G P+ I W
Sbjct: 511 SKVGVAEHSAKLNVYGL--------PYIRQM-EKKAIVAGETLIVTCPVAGYPIDSIVWE 561
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFT- 238
+ + +N++Q + L I V SD YTC AKN G
Sbjct: 562 RDNRAL--------PINRKQKVFPN----GTLIIENVERNSDQATYTCVAKNQEGYSARG 609
Query: 239 NISLNVIKVETAVAQPDPVYLV 260
++ + V+ + +
Sbjct: 610 SLEVQVMVLPRIIPFAFEEGPA 631
Score = 68.0 bits (166), Expect = 1e-12
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
+ + + C+A+G+P+P+I WI + G ++ I+S L
Sbjct: 47 NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG----------LRQISSDGKL 96
Query: 213 TIVAVTMSD------SGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVY 258
D + +Y C A+N G + + ++ + + + A + +
Sbjct: 97 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149
Score = 63.4 bits (154), Expect = 5e-11
Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 19/146 (13%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNK 198
+ + + C V + W E+ A +
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE---ENYFPGAEYDG 191
Query: 199 RQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKN---GAGEVFTNISLNVIKVETAVAQP 254
+ ++ + L I V D Y CR K+ G + VI + A P
Sbjct: 192 KYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP 247
Query: 255 DPVYLVASLTTVV----TIILTACFV 276
V L T+ L C
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALL-CPA 272
Score = 37.2 bits (86), Expect = 0.008
Identities = 4/58 (6%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE--TAVAQPDPVYLVASLTTVV 267
+ + + ++ A G + + + +P ++ T
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAE 58
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 90.7 bits (225), Expect = 2e-21
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
N I H ++V +E P ++ P + + +V C+ P I+W
Sbjct: 97 NEYGSINHTYHLDV----VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 180 IFKEKIIAN--ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
I + + GL + ++ ++ L + VT +D+G Y C+ N G+
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212
Query: 238 TNISLNVIKVETAVAQP 254
+ L V+ + A +
Sbjct: 213 QSAWLTVLPKQQAPGRE 229
Score = 81.9 bits (202), Expect = 3e-18
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
+ + + V C A G+P+P ++W+ K R
Sbjct: 18 WTNTEKMEK--RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIG 67
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
K N +L + +V SD G YTC +N G + L+V+
Sbjct: 68 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 89.1 bits (221), Expect = 4e-21
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N + +AF+ V P + I+ + T EN VTL C A G P+P+I
Sbjct: 79 NKAGEDEKQAFLQVFVQPHI----------IQL--KNETTYENGQVTLVCDAEGEPIPEI 126
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
W + + G +++ R +K + S+L I V +SDSG Y C A + G
Sbjct: 127 TW-KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ 184
Query: 238 TNISLNV 244
++ L++
Sbjct: 185 KSMYLDI 191
Score = 87.2 bits (216), Expect = 1e-20
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ ++ + + TAE E +T SCRA+GSP P I W K+I
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK-----------YI 52
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S + LT+ + SD G Y CRA N AGE L V
Sbjct: 53 LKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 85.8 bits (213), Expect = 4e-21
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
T + + R G P P+ +W I + R Y +++ L
Sbjct: 14 SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--------SDRIYWYWPEDNVCELV 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I VT DS +A N AGE ++ L V
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 88.6 bits (220), Expect = 5e-21
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKIIANISSGLANMNKRQ 200
A +P+ + ++ N TL C+ TG P P +KW ++ ++IIA+ +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIAD--------GLKY 52
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
I + L I +VT D+ +Y RA N G V SL V
Sbjct: 53 RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104
Score = 82.8 bits (205), Expect = 7e-19
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N ++ A + V K++L V A E V++ +G P P I
Sbjct: 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGM------GAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
W + +I N N +I T + S + V D+G Y AKN G
Sbjct: 137 TWQKGQDLIDN--------NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 238 TNISLNVI 245
+ L+V
Sbjct: 189 KTVELDVA 196
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 85.4 bits (212), Expect = 7e-21
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D T + + +ATG P P W K+ I+ G +Y + L
Sbjct: 15 DTTVSSDSVAKFAVKATGEPRPTAIW-TKDGKA--ITQG------GKYKLSEDKGGFFLE 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I SDSG+YTC KN AG V ++ L +
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 90.8 bits (226), Expect = 8e-21
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 29 LQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRK 85
A CP C C V C +P+++ T +LDL +N L + F+
Sbjct: 21 PTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG 76
Query: 86 LINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
L +L L L N+I + + +L++L +S N + +I ++ +L + D
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD 132
Score = 70.4 bits (173), Expect = 1e-13
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
T IP+ L L L N ++ + L L L +NQI+ + + L +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242
Query: 113 LRELKLSGNPIQKITHEAFINVPKL 137
LREL L N + ++ ++ L
Sbjct: 243 LRELHLDNNKLSRVPA-GLPDLKLL 266
Score = 65.0 bits (159), Expect = 5e-12
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
L +S+ L L EL L +N+IQ + L +L L L N I+ I +
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 129 EAFINVPKL 137
+ +P L
Sbjct: 235 GSLSFLPTL 243
Score = 62.3 bits (152), Expect = 4e-11
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 69 QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+++ N + F L L L +S ++ +P + ++ L EL L N I
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKI 205
Query: 124 QKITHEAFINVPKL 137
Q I E + KL
Sbjct: 206 QAIELEDLLRYSKL 219
Score = 59.6 bits (145), Expect = 3e-10
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ--FVPSHILDSI 110
+ IP L L + DN + + F L N+ +++ N ++ D
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG- 171
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
L+L L++S + I + + +L+L+
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDH 202
Score = 57.7 bits (140), Expect = 2e-09
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQ------FVPSHILDSILELRELKLSG 120
+ L L +N L R L L + L N I F P + L
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303
Query: 121 NPIQ--KITHEAFINVPKL 137
NP+ ++ F V
Sbjct: 304 NPVPYWEVQPATFRCVTDR 322
Score = 31.9 bits (73), Expect = 0.34
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQ 98
+ L +N + TFR + + + + +
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 88.5 bits (219), Expect = 8e-21
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
S + P+V EN V LSC +G P+++W F + + N Y +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY-NNKITASYEDR 62
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ +T +VT D+G YTC G + + + +I
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
Score = 80.8 bits (199), Expect = 5e-18
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 9/129 (6%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKW 179
E + + P+ + +A L+C GSP + W
Sbjct: 89 EEGGNSYGEVKVKL------IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142
Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
++ + Y++ L ++ SD+G Y+C A+NG G T+
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTS 200
Query: 240 ISLNVIKVE 248
++ + VE
Sbjct: 201 NAVRMEAVE 209
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 90.8 bits (226), Expect = 9e-21
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
CP C+C V C +P+ L T +LDL +N + F+ L NL
Sbjct: 25 CPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
L L N+I + +++L L LS N ++++ + + +L + +
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 130
Score = 68.1 bits (167), Expect = 5e-13
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N TTIP+ L L L N +D + + L NL +L LS+N I V + L +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 113 LRELKLSGNPIQKITHEAFINVPKL 137
LREL L+ N + K+ + +
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYI 265
Score = 65.4 bits (160), Expect = 4e-12
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 69 QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
V++L N ++ F+ + L + ++ I +P + S L EL L GN I
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKI 204
Query: 124 QKITHEAFINVPKL 137
K+ + + L
Sbjct: 205 TKVDAASLKGLNNL 218
Score = 65.0 bits (159), Expect = 5e-12
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+ ++D + +L EL L N+I V + L + L +L LS N I + +
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233
Query: 129 EAFINVPKL 137
+ N P L
Sbjct: 234 GSLANTPHL 242
Score = 63.1 bits (154), Expect = 2e-11
Identities = 14/91 (15%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ--FVPSHILDSI 110
+PE++ Q L + +N + + F L ++ ++L N ++ + + +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
+L ++++ I I ++ +L+L+
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDG 201
Score = 58.5 bits (142), Expect = 7e-10
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 10/79 (12%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQ------FVPSHILDSILELRELKLSG 120
+ L L++N L + + + L N I F P + L
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 121 NPIQ--KITHEAFINVPKL 137
NP+Q +I F V
Sbjct: 303 NPVQYWEIQPSTFRCVYVR 321
Score = 33.4 bits (77), Expect = 0.099
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 5/34 (14%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYN 97
+ L N + TFR + + L
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 87.8 bits (218), Expect = 9e-21
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
DVT + E LSC+ G P+P IKW K + R+Y + + LT
Sbjct: 16 DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ---------SRKYKMSSDGRTHTLT 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
++ D G+YTC A N GEV T+ L +
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Score = 79.7 bits (197), Expect = 1e-17
Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 21/128 (16%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N + ++ + + + P+ + P+ + L G PVP +
Sbjct: 84 NEVGEVETSSKLLLQATPQFHPG--------YPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEV 236
W +K++ N ++ I+ ++L + V + +G Y + N G V
Sbjct: 136 TWFHGQKLLQN--------SEN-ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 237 FTNISLNV 244
+ + +
Sbjct: 187 DAILDVEI 194
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 87.9 bits (218), Expect = 1e-20
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
V E T +G PVP++ W ++I+ I + + LT
Sbjct: 14 SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIST-------STLPGVQISFSDGRAKLT 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I AVT ++SG Y+ +A NG+G+ + L V
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
Score = 82.1 bits (203), Expect = 1e-18
Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + T A + V + PN +T + V L R TG P P +K+
Sbjct: 84 NGSGQATSTAELLV-----KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY 138
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
I + + + I L +L I DSG Y+ A N G +
Sbjct: 139 RDGAEIQS--------SLD-FQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTA 189
Query: 241 SLNV 244
L V
Sbjct: 190 ELLV 193
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 84.7 bits (210), Expect = 1e-20
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
E VT +CR G+P PKI W FK+ ++ + I + ++ +L
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYW-FKDGKQ------ISPKSDHYTIQRDLDGTCSLH 69
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
A T+ D G YT A N G + L V V +
Sbjct: 70 TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 84.4 bits (209), Expect = 1e-20
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + T + L C+ATG P+P I W+ + T
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-----------RAT 57
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
I L I + +SD+G YTC A + +GE + L+V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 92.0 bits (229), Expect = 2e-20
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLV 90
+ C T C + + +P+ + T+ +DLS N L Y+F L
Sbjct: 2 GSLNPCIEVVPN--ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQ 59
Query: 91 ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
LDLS +I+ + + L L L+GNPIQ + +F + L
Sbjct: 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Score = 72.8 bits (179), Expect = 4e-14
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
L ++ N F NL LDLS Q++ + + D++ L+ L +S N +
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 125 KITHEAFINVPKL 137
+ + + L
Sbjct: 511 FLDSSHYNQLYSL 523
Score = 70.1 bits (172), Expect = 3e-13
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
LDLS L F L L L++S+N + F+ S + + L L S N I+
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 126 ITHEAFINVPKL---NLED--FACSPNIRP 150
L NL + AC +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVACICEHQK 565
Score = 65.1 bits (159), Expect = 1e-11
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 69 QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
Q LD + L + F L L+ LD+SY + I + L LK++GN +
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 125 K-ITHEAFINVPKL 137
F N L
Sbjct: 462 DNTLSNVFANTTNL 475
Score = 62.7 bits (153), Expect = 7e-11
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQK 125
+ LDLS N F L L LD ++ ++ V S+ +L L +S +
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 126 ITHEAFINVPKL 137
F+ + L
Sbjct: 439 DFDGIFLGLTSL 450
Score = 62.4 bits (152), Expect = 8e-11
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
Q L + L ++ L L L L+ N+ + ++ L L LS N +
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGC 367
Query: 129 EAFINVPKLNLEDFACSPN 147
++ ++ +L S N
Sbjct: 368 CSYSDLGTNSLRHLDLSFN 386
Score = 61.6 bits (150), Expect = 2e-10
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 69 QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
+ L+++ NF+ F L NLV +DLSYN IQ + + L + E L +S
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 121 NPIQKITHEAFINVP--KLNLEDFACSPNIRPIT 152
NPI I +AF + +L L S NI
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Score = 56.2 bits (136), Expect = 7e-09
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 68 TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
L+ D F L N+ + L+ I+++ + + L + ++
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLK 320
Query: 125 KITHEAFINVPKLNL 139
+ + L L
Sbjct: 321 QFPTLDLPFLKSLTL 335
Score = 55.8 bits (135), Expect = 9e-09
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 69 QVLDLSDN---FLDRYTFR--KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
LDLS N F ++ +L LDLS+N + ++ + EL+ L + +
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE-ELQHLDFQHSTL 411
Query: 124 QKIT-HEAFINVPKL 137
+++T AF+++ KL
Sbjct: 412 KRVTEFSAFLSLEKL 426
Score = 51.2 bits (123), Expect = 3e-07
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 19/118 (16%)
Query: 56 NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQ-FVPS 104
TI + LD+S N + F + I L EL L N +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMK 222
Query: 105 HILDSILELRELKLSGN------PIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
L ++ L +L ++ + + +++F +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 84.4 bits (209), Expect = 3e-20
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
E ++V L C+ + P PK+ W + + + R + + L
Sbjct: 24 SKKVLEGDSVKLECQISAIPPPKLFW-KRNNEM------VQFNTDRISLYQDNTGRVTLL 76
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
I V D+G YT A N AG N L+V
Sbjct: 77 IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 86.9 bits (215), Expect = 4e-20
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
++ DV ENE++ L+C +G P+++W F + + + + T
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+S S +T +VT D+G YTC G+ + +S+++
Sbjct: 62 FSS-SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
Score = 78.5 bits (193), Expect = 4e-17
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 146 PNIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P+ I+ + L+C GSP + W FK+ I +
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW-FKDGISMLTADAKKTRAFMNSSFT 163
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
+L VT DSG Y C+A+NG G + + ++ VE V
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 86.4 bits (214), Expect = 4e-20
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P D T + C+ATG P PKI W K K ++N + + I
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--------QRFEVIEFD 58
Query: 206 INSLSNLTIVAV-TMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
S S L I + T D IY C A N GE+ + L V++ +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
Score = 80.2 bits (198), Expect = 7e-18
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + +I+ + V + + + P I E T+ C A+G+P P+I W
Sbjct: 85 NNVGEISVSTRLTVLRED-QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-N 239
+ + N + S+ L I SD G Y C A N AG ++
Sbjct: 144 KDFLPV------DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
Query: 240 ISLNV 244
+L V
Sbjct: 198 ANLYV 202
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 87.7 bits (218), Expect = 5e-20
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 36 PSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVEL 92
P T C NF IP+ L T+ LDLS N L Y+F L L
Sbjct: 2 PCVEVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 93 DLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
DLS +IQ + S+ L L L+GNPIQ + AF + L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Score = 60.8 bits (148), Expect = 9e-11
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 68 TQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLS 119
+ L+++ N + + F L NL LDLS N+IQ + L + ++ L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 120 GNPIQKITHEAFINVPKLNLE 140
NP+ I AF ++ L+
Sbjct: 186 LNPMNFIQPGAFK---EIRLK 203
Score = 58.1 bits (141), Expect = 9e-10
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 69 QVLDLSDN---FLDRYTFRKLINL----VELDLSYNQIQFVPSHILDSILELRELKLSGN 121
+ LDLS N + R L + + LDLS N + F+ + L+EL L N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210
Query: 122 PIQKITHEAFINVPKLN 138
++ + F + L
Sbjct: 211 QLKSVPDGIFDRLTSLQ 227
Score = 55.0 bits (133), Expect = 1e-08
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 56 NFTTIPE-------QLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
+I Q+ + LDLS N F+ F+++ L EL L NQ++ VP
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218
Query: 106 ILDSILELRELKLSGNPIQ 124
I D + L+++ L NP
Sbjct: 219 IFDRLTSLQKIWLHTNPWD 237
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 89.5 bits (222), Expect = 5e-20
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P+I + T EN VTL C A G P+P+I W + + G +++ R +K
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITW-KRAVDGFTFTEGDKSLDGR-IEVKG 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ S+L I V +SDSG Y C A + G ++ L++
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
Score = 79.1 bits (195), Expect = 2e-16
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + E + +SC +P I W + ++ ++ +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT-------NLKTYS 153
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD-PVYLVASLT 264
L I + +D G Y C A N G F L + V P P +
Sbjct: 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV------PSSPYGVKIIEL 207
Query: 265 TVVTIILT 272
+ T ++
Sbjct: 208 SQTTAKVS 215
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 85.6 bits (212), Expect = 5e-20
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
E +P I V A E T C P P+I W + +I +
Sbjct: 2 EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI--------KLFDT 53
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
+Y I+ L LTI++V SD GIY C A NG G + +K+
Sbjct: 54 RYSIRENGQL--LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99
Score = 75.9 bits (187), Expect = 2e-16
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I +V E L C G+P P + WI + + N R ++++
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE--------NSRIAVLES 152
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
+L I V D+G Y C AKN G ++ + L V
Sbjct: 153 ----GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 82.8 bits (205), Expect = 7e-20
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
V L C G P P + W + +A + + L
Sbjct: 22 PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA---------SERLSFPADGAEHGLL 72
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ A +D+G+Y CRA+N AGE + ++ V+
Sbjct: 73 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 86.5 bits (214), Expect = 8e-20
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
N I ++V LE P ++ P + TA +V C+ P I+W
Sbjct: 93 NKFGSIRQTYTLDV----LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 180 IFKEKIIAN---ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+ ++ + + +I +++ + L + V+ D G Y CRA N G
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208
Query: 237 FTNISLNVIKVETAVAQPDPV 257
L+V A+ + V
Sbjct: 209 EKAFWLSVH--GPRAAEEELV 227
Score = 81.1 bits (200), Expect = 7e-18
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
+ + + V C A G+P P I W+ + R
Sbjct: 14 WTRPERMDK--KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF--------RGEHRIG 63
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
IK + +L + +V SD G YTC +N G + +L+V+
Sbjct: 64 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 82.9 bits (205), Expect = 8e-20
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P IR + T + LSC ATGSPVP I W +++ S R ++
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-------RIKQLEN 61
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
L I + D+G YTC A +GE + + V + V P P
Sbjct: 62 ----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 82.8 bits (205), Expect = 8e-20
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I D E+V L + TG+ W+ K I ++
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI---------QESEHMKVEN 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ S LTI+A G YT +N G ++L V+
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 88.0 bits (218), Expect = 8e-20
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ + VT +E + + L+C G P P++ W+ EK +A+ + +
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAS--------DDHCNLKFE 274
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ TI V+ +DSG Y KN G ++ +++V
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 77.3 bits (190), Expect = 3e-16
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
NV L C+ I W E+ I+ ++ K + +
Sbjct: 14 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---------DEKHDFK--DGICT 62
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIIL 271
L I + D+GIY K+ G+ + + L + + + +++ +
Sbjct: 63 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 272 TACFVVLCII 281
+ +
Sbjct: 123 EGIQLYSFVT 132
Score = 64.2 bits (156), Expect = 9e-12
Identities = 19/137 (13%), Positives = 33/137 (24%), Gaps = 19/137 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATG----------SPVPKIKWIFKEKIIANISSGLAN 195
+ A ++ + A G K+ W I
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY------- 151
Query: 196 MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
+ R L I T +D G Y +G + L+ + A A+
Sbjct: 152 -SDR-VKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 209
Query: 256 PVYLVASLTTVVTIILT 272
+ A +L
Sbjct: 210 RLKQAAIAEKNRARVLG 226
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 85.9 bits (213), Expect = 1e-19
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 32/133 (24%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY------------- 81
CP C C+ TV C + IPE + T L L++N
Sbjct: 5 CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLR 60
Query: 82 ---------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
F + E+ L+ N+++ V + + L+ L L N I +
Sbjct: 61 KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120
Query: 127 THEAFINVPKLNL 139
+++FI + + L
Sbjct: 121 GNDSFIGLSSVRL 133
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 84.8 bits (210), Expect = 1e-19
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ ++ + + TAE E +T SCRA+GSP P I W K+I N++ +
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--------NEKYILK- 148
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S + LT+ + SD G Y CRA N AGE L V
Sbjct: 149 --GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 77.5 bits (191), Expect = 4e-17
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
R + ++ E+ + CR + SP P + W++ + + IS
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN----------RFA 52
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
+ + +NL I+ + SD GIY C + A I I V V P S
Sbjct: 53 MLANNNLQILNINKSDEGIYRCEGRVEARG---EIDFRDIIVIVNVP-PAISMPQKSFNA 108
Query: 266 VVT 268
Sbjct: 109 TAE 111
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 82.0 bits (203), Expect = 1e-19
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + + + L G+P P W + A ++
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--------APE-LLVDA 53
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+S +++ + +DSG Y + KN GE + V
Sbjct: 54 KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 89.3 bits (222), Expect = 1e-19
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINL 89
C K +T C+ IP L T+ L+ S N L TF +LINL
Sbjct: 2 TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINL 59
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
LDL+ QI ++ S L L L+ NP+ + A L
Sbjct: 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107
Score = 73.9 bits (182), Expect = 1e-14
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ L + D L L L N I + +L+ L N I
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 126 ITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
++ E ++ + + N I I P
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198
Score = 70.4 bits (173), Expect = 2e-13
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 69 QVLDLSDNFLDR------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
Q L+L N + + + L L L LS+ + + H S+ + + LS N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 123 IQKITHEAFINVPKLNL 139
+ + EA ++ + L
Sbjct: 512 LTSSSIEALSHLKGIYL 528
Score = 66.6 bits (163), Expect = 3e-12
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGNP 122
L + N L L NL ELDLS++ I+ L ++ L+ L LS N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 123 IQKITHEAFINVPKL 137
+ EAF P+L
Sbjct: 388 PLSLKTEAFKECPQL 402
Score = 65.4 bits (160), Expect = 9e-12
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
++L LS +D++ F L + +DLS+N++ L L+ L L+ N I
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGIYLNLASNHISI 537
Query: 126 ITHEAFINVPKL---NLED--FACSPNIRP 150
I + + NL C+ +
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIY 567
Score = 65.0 bits (159), Expect = 1e-11
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ LDLS + + R L +L L+LSYN+ + + +L L L+ +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 124 QKITHE-AFINVPKL 137
+ + F N+ L
Sbjct: 413 KVKDAQSPFQNLHLL 427
Score = 63.9 bits (156), Expect = 3e-11
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 69 QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
++LDL+ L F+ L L L+LS++ + + D + L+ L L GN
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Query: 125 KITHE---AFINVPKL 137
K + + + +L
Sbjct: 463 KGNIQKTNSLQTLGRL 478
Score = 61.2 bits (149), Expect = 2e-10
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ-K 125
Q LDL+ L L L +L LS N+ + + + L L + GN + +
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Query: 126 ITHEAFINVPKL 137
+ N+ L
Sbjct: 341 LGTGCLENLENL 352
Score = 56.9 bits (138), Expect = 5e-09
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 69 QVLDLSDN---FLDRYTFRKL--INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ D + F L +++ ++L + + S+ L+EL L+ +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 124 QKITHEAFINVPKL 137
++ + + L
Sbjct: 291 SEL-PSGLVGLSTL 303
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 86.9 bits (215), Expect = 1e-19
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ R + TA ++VTL C A G P P + W + I N
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-------DEKHI 248
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ S LTI V +D Y C A+N AGE +I L V
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 77.2 bits (190), Expect = 3e-16
Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 14/127 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ +E E+ + C S P I W K + +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF----------I 150
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA---VAQPDPVYLVAS 262
+ S + L I + +D G Y C + A + VI V A+ V A+
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI-VNVPPTVQARQSIVNATAN 209
Query: 263 LTTVVTI 269
L VT+
Sbjct: 210 LGQSVTL 216
Score = 72.2 bits (177), Expect = 2e-14
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 8/114 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ + E+ C+ G I W L+ +R ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------LSPNQQRISVVW 56
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPV 257
+ S LTI + D+GIY C G +++ + + P P
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ 110
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 81.6 bits (202), Expect = 2e-19
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + T E++ +SC A+G+P P+I W FK+ SG I
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDSG----------IVL 59
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ NLTI V D G+YTC+A + G +
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 81.2 bits (201), Expect = 2e-19
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D E ++ L C G+PVP+I W+ + I + ++ L
Sbjct: 20 DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI------------QYARSTCEAGVAELH 67
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I D G YTC A+N G+V + + V
Sbjct: 68 IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 88.2 bits (219), Expect = 3e-19
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR---YTFRKLINLVE 91
C ++ ++++FT+IP L + LDLS N + R NL
Sbjct: 4 CDASG---------VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQV 54
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L L ++I + S+ L L LS N + ++ F + L
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100
Score = 65.5 bits (160), Expect = 7e-12
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
+ + +VLD+S+N L L L EL +S N+++ +P L L
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNL-DSFSLFLPRLQELYISRNKLKTLPDASLFP--VLLV 477
Query: 116 LKLSGNPIQKITHEAFINVPKL---NLED--FACSPN----IRPITPDVTAEENENVTLS 166
+K+S N ++ + F + L L + CS + + +E +
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK-- 535
Query: 167 CRATGSPV 174
C +G PV
Sbjct: 536 CSGSGKPV 543
Score = 64.4 bits (157), Expect = 2e-11
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
Q L + + + R F L +L EL++ ++ S L SI ++ L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 125 KITHEAFINVPKLN 138
+ + +
Sbjct: 186 FLLEIFADILSSVR 199
Score = 64.0 bits (156), Expect = 2e-11
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 69 QVLDLSDNFLD----RYTFRKLINLVELDLS-YNQIQFVPSHILDSILELRELKLSGNPI 123
+ L+L N F L NL L + + + L EL++ +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 124 QKITHEAFINVPKLNLEDFA 143
+ ++ ++ ++
Sbjct: 161 RNYQSQSLKSIRDIHHLTLH 180
Score = 64.0 bits (156), Expect = 2e-11
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
Q L LS N L L NL LD+S N +P ++R L LS I
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSSTGI 422
Query: 124 QKITHEAFINVPKLNLED 141
+ + + L++ +
Sbjct: 423 RVVKTCIPQTLEVLDVSN 440
Score = 59.7 bits (145), Expect = 5e-10
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 69 QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ L + +L + L + + + +++ VP + L L LS N + +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 126 I---THEAFINVPKL 137
P L
Sbjct: 349 EYLKNSACKGAWPSL 363
Score = 59.0 bits (143), Expect = 1e-09
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L++ L Y + + + ++ L L ++ F+ D + +R L+L + +
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210
Query: 126 ITHEAFINVPKLN 138
+
Sbjct: 211 FQFSPLPVDEVSS 223
Score = 59.0 bits (143), Expect = 1e-09
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSG-NPI 123
+ LDLSDN L F L +L L+L N Q + + + ++ L+ L++
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 124 QKITHEAFINVPKLN 138
+I F + LN
Sbjct: 137 SEIRRIDFAGLTSLN 151
Score = 57.8 bits (140), Expect = 2e-09
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 56 NFTTIPEQLDVGT--QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
F +P+ + L+LS + L LD+S N + + L
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF----LPRL 453
Query: 114 RELKLSGNPIQKITHEAFIN 133
+EL +S N ++ + +
Sbjct: 454 QELYISRNKLKTLPDASLFP 473
Score = 55.9 bits (135), Expect = 9e-09
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ---FVPSHILDSILELRELKLSGNP 122
+ + + ++ + + L +L LDLS N + S + L+ L LS N
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 123 IQKITHEA--FINVPKL 137
++ + + + L
Sbjct: 373 LRSMQKTGEILLTLKNL 389
Score = 54.7 bits (132), Expect = 2e-08
Identities = 3/64 (4%), Positives = 23/64 (35%)
Query: 74 SDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN 133
+ + + + + L + + + S + + +++ + + + + + +
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332
Query: 134 VPKL 137
+ L
Sbjct: 333 LKSL 336
Score = 35.1 bits (81), Expect = 0.031
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 67 GTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSI--------LELREL 116
G+ + D S N L + +L + D + N + D + + +R L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291
Query: 117 KLSGNPIQKITHEAFINVPKL 137
+ + + + K+
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKV 312
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 82.6 bits (204), Expect = 3e-19
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D+ E C+ G P P++ W + + ++ I +LT
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE--------SRHFQIDYDEEGNCSLT 101
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I V D YTC+A N GE L V +
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 85.6 bits (212), Expect = 3e-19
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P V E+ T C TG+ KI W + I + Y +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN---------YKMTL 56
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
+ + + LT++ VT D+G YTC A N AG+ + L V + + + +P +V
Sbjct: 57 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 116
Query: 266 VV 267
Sbjct: 117 TR 118
Score = 85.6 bits (212), Expect = 3e-19
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N K + A + V P+ I+ + P +++E+ C+ GSP K+
Sbjct: 82 NVAGKDSCSAQLGVQEPPRF----------IKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
W E I ++ + + S++ L + +++ DSG YTC A N AG
Sbjct: 132 LWYKDETEIQE---------SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182
Query: 238 TNISLNV 244
++ SL V
Sbjct: 183 SSTSLKV 189
Score = 83.3 bits (206), Expect = 2e-18
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + V + P R V + +V L C G+P ++ W
Sbjct: 176 NAAGSASSSTSLKVKE--------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 227
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
++ + + K+ Y I + N L+++ I+ V +D G Y C+A N G
Sbjct: 228 KDKRELRS--------GKK-YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278
Query: 241 SLNV 244
S+ +
Sbjct: 279 SITL 282
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 80.8 bits (200), Expect = 4e-19
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 9/104 (8%)
Query: 141 DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
+P I +N P ++KW + + +
Sbjct: 4 TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--------SSK- 54
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + L I+ DSG Y N GE +L+V
Sbjct: 55 IHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 83.7 bits (207), Expect = 4e-19
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
++ +A + + + A P I E V ++C+A G+P P I WI +
Sbjct: 90 DAVSADATLTI-YEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ 148
Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
+ +M+ +Y +K L I D G Y C A+N G + +
Sbjct: 149 TKV--------DMSNPRYSLKD----GFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
Query: 244 VIKVETAVAQP 254
+KV +
Sbjct: 197 YVKVRRVGTKH 207
Score = 79.1 bits (195), Expect = 2e-17
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I + + C A G P P I W K + + R +++
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-------SGTQSRYTVLEQ 59
Query: 206 INSLSNLTIVAVT-MSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVASL 263
+S L I V D Y C A+NG G+ + + +L + + + A PV
Sbjct: 60 PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF-PVITQGPG 118
Query: 264 TTVVTI 269
T V+ +
Sbjct: 119 TRVIEV 124
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 80.2 bits (198), Expect = 5e-19
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
V C A G+P+P ++W+ K R K N +L
Sbjct: 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLI 68
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ +V SD G YTC +N G + L+V+
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 80.8 bits (199), Expect = 6e-19
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
T + E++T + + P IKW + + +G K + +
Sbjct: 16 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ I+ + +G Y C + L V
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 85.4 bits (211), Expect = 7e-19
Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 9/133 (6%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
N I ++V LE P ++ P + TA +V C+ P I+W
Sbjct: 201 NKFGSIRQTYTLDV----LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Query: 180 I----FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
+ + + + K T L L++ VT D+G YTC A N G
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
Query: 236 VFTNISLNVIKVE 248
+ L V+ E
Sbjct: 317 SHHSAWLVVLPAE 329
Score = 81.2 bits (200), Expect = 2e-17
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
+ V C A G+P P I W+ + R IK + +L
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSL 182
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ +V SD G YTC +N G + +L+V+
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Score = 61.2 bits (148), Expect = 1e-10
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 15/126 (11%)
Query: 143 ACSPNIRPITP-DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
A P P + + V LSC G P+ W K+ G + +
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVW-VKD--------GTGLVPSER 55
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
++ L ++ + DSG Y+CR + + + +
Sbjct: 56 VLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 261 ASLTTV 266
+
Sbjct: 112 DTGVDT 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 83.2 bits (206), Expect = 9e-19
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
CP+ C C V C+ K T IP L + L N + Y
Sbjct: 5 CPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 83 ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F+ L +L L L N+I +P + + + L+ L L+ N I +
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Query: 128 HEAFINVPKLNL 139
+AF ++ LNL
Sbjct: 121 VDAFQDLHNLNL 132
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 79.3 bits (196), Expect = 1e-18
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
EE +V C+ ++ W F + + N +Y I + ++ L
Sbjct: 10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN---------SEKYEITYEDGVAIL 60
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ +T D G Y C+ N GE + L V
Sbjct: 61 YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 86.4 bits (214), Expect = 1e-18
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + V P R V + +V L C G+P ++ W
Sbjct: 368 NAAGSASSSTSLKV--------KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
++ + + K+ Y I + N L+++ I+ V +D G Y C+A N G
Sbjct: 420 KDKRELRS--------GKK-YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG 470
Query: 241 SLNV 244
S+ +
Sbjct: 471 SITL 474
Score = 84.9 bits (210), Expect = 4e-18
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
NP+ + A KL L + P V E+ T C TG+ KI W
Sbjct: 178 NPLGTASSSA-----KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ I Y + + + + LT++ VT D+G YTC A N AG+ +
Sbjct: 233 KDNREIRP---------GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 241 SLNVIKVETAVAQPDPVYLVA 261
L V + + + +P +V
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVK 304
Score = 84.5 bits (209), Expect = 5e-18
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
L +++ P+ DV V CR GS ++ W +++ + ++
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN----- 147
Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I++++ L I+ S G Y C A N G ++ L + + E
Sbjct: 148 ----LQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197
Score = 81.8 bits (202), Expect = 4e-17
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 22/127 (17%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N K + A + V P+ I+ + P +++E+ C+ GSP K+
Sbjct: 274 NVAGKDSCSAQLGVQEPPRF----------IKKLEPSRIVKQDEHTRYECKIGGSPEIKV 323
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
W E I S ++ + + S++ L + +++ DSG YTC A N AG
Sbjct: 324 LWYKDETEIQESS---------KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 374
Query: 238 TNISLNV 244
++ SL V
Sbjct: 375 SSTSLKV 381
Score = 81.0 bits (200), Expect = 6e-17
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 16/125 (12%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + T I + P D++ E V L G+ + W
Sbjct: 461 NDVGSDTCVGSITL--------KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ I S I +++ L +++G YTC+ KN AG
Sbjct: 513 KDKGEIVRESDN--------IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFA 564
Query: 241 SLNVI 245
+L+V+
Sbjct: 565 TLSVL 569
Score = 79.8 bits (197), Expect = 2e-16
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P V A E +TL C+ G+P +I W + + + + Y ++
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA---------YKMQF 56
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
N++++L I V SD G YTC+A+N G V ++ L + + +
Sbjct: 57 KNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLP 101
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 81.4 bits (201), Expect = 2e-18
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ V E+ +C A G P + + + I ++ ++ +++
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI---------ISTQRVVVQK 53
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPV 257
S LTI + D+GIY C+A + G+ + L + + T P
Sbjct: 54 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ 106
Score = 76.7 bits (189), Expect = 8e-17
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
R + ++ E+ + CR + SP P + W++ + + IS R
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN------RF----A 146
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + +NL I+ + SD GIY C + A + VI
Sbjct: 147 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 83.5 bits (206), Expect = 2e-18
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + ++ V +++ E P I+ + E + C AT + V +
Sbjct: 166 NGRESTSTGIWLKVNRVHPE----PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL 221
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ I + + L++ AV D+GIY+C A N G +
Sbjct: 222 KRGDTKLEIP------LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATM 275
Query: 241 SLNVI 245
+ V+
Sbjct: 276 NFQVV 280
Score = 68.1 bits (166), Expect = 5e-13
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+P I P P++ E E VTL C + GS ++W +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG--------- 50
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S LT T ++G Y C T I L V
Sbjct: 51 -----STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Score = 65.4 bits (159), Expect = 4e-12
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPV-PKIK 178
+ + V + + +VT E + L C T + +
Sbjct: 72 EDPMAGSTTIHLYVKDP--------AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
+ + G + K Y + I + DS Y C+ E +
Sbjct: 124 LMRE--------GGRQVLRKTVYFF---SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTS 172
Query: 239 -NISLNVIKVETA 250
I L V +V
Sbjct: 173 TGIWLKVNRVHPE 185
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 82.7 bits (203), Expect = 2e-18
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 145 SPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
S N+ T V +E ++T++C T + W N +G +
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 204 KTINSLS------------NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
S NL I A ++D+G C G GE+ + S ++KV
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 54.5 bits (130), Expect = 9e-09
Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 23/144 (15%)
Query: 146 PNIRPITPDVTAEENENVTLSCR---ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
+R +V V L C A + P I W+ + N N +
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 203 IKTINSLS--------------------NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
+ + S S L + V D G Y C+ + +
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 243 NVIKVETAVAQPDPVYLVASLTTV 266
+ ++ P V++ V
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVV 146
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 83.3 bits (206), Expect = 2e-18
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ ++ + + TAE E +T SCRA+GSP P I W K+I N++ +
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--------NEKYILK- 244
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S + LT+ + SD G Y CRA N AGE L V
Sbjct: 245 --GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 78.3 bits (193), Expect = 1e-16
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ V E+ +C A G P I W G ++ ++ +++
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNP--------QGEKIISTQRVVVQK 55
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
S LTI + D+GIY C+A + G+ + L + + T P
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ 112
Score = 76.4 bits (188), Expect = 6e-16
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
R + ++ E+ + CR + SP P + W++ + + IS R ++
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN------RFAMLAN 152
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGA-GEVFTNISLNVIKVETAVAQPDP 256
+NL I+ + SD GIY C + A GE+ + ++ V A++ P
Sbjct: 153 ----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 81.0 bits (200), Expect = 3e-18
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P+I E ++ + C++ G P P+ W KE + ++N + R + I
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN---GVFEEISNSSGR-FFIIN 148
Query: 206 INSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFTNISLNV 244
+ + L IV + + D G Y C A N G + L V
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 65.3 bits (159), Expect = 8e-13
Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 17/101 (16%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKI--KWIFKEKIIANISSGLANMNKRQYII 203
P I + + VTL C T S + W + +N
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-------- 55
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I DSG Y C + N ++ V
Sbjct: 56 ------MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 78.6 bits (194), Expect = 3e-18
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
R + + E + L G P P++ W + + + ++T +
Sbjct: 28 RHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL----------DTSRVHVRTSDF 77
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + SDSG Y + + I + V+
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 78.5 bits (193), Expect = 3e-18
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
D ++T S R G+ + P +KW + + + G Y + L
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
L I + +G Y C +N +L V +
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 82.7 bits (204), Expect = 4e-18
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + + ++ E + C A+ V ++ + LA + +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN------TKLAIPQQSDFHNNR 240
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ L + V +G Y+C A N G+ T++ V+
Sbjct: 241 YQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
Score = 69.6 bits (170), Expect = 1e-13
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P I P P++ + VTL C GS ++W + +
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--------------PSPHWTLY 45
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ S S L+ T ++G Y C I L V
Sbjct: 46 SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Score = 67.3 bits (164), Expect = 8e-13
Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 21/148 (14%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKW 179
+ + V + + +V E+++ L C T +
Sbjct: 72 GDPLGGSAAIHLYVKDP-------ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSL 124
Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
+ + + + TI S Y C A G +V +
Sbjct: 125 VRVRGRPLMRHTNY-----------SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
Query: 240 ISLNVIKVETAVAQPDPVYLVASLTTVV 267
+KV+ + P + LV + +
Sbjct: 174 SI--RLKVQKVIPGPPALTLVPAELVRI 199
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 84.4 bits (208), Expect = 6e-18
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 24/170 (14%)
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKL--SG-------NPIQKITHEAFINVPKLNLE 140
++ N F S I+EL+ L G + K H + L
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665
Query: 141 DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
+P I + T E++ +SC A+G+P P+I W + + S
Sbjct: 666 ----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--------- 712
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
I + NLTI V D G+YTC+A + G + +
Sbjct: 713 --IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760
Score = 75.9 bits (186), Expect = 4e-15
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 25/128 (19%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
+ + + F+ V P + + V A E V + + G P P+I
Sbjct: 311 SGLMTKKNSTFVRVHEKPFVAFG--------SGMESLVEATVGERVRIPAKYLGYPPPEI 362
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
KW + I LTI+ V+ D+G YT N +
Sbjct: 363 KWYKNGIPL----------ESNHTIKAG----HVLTIMEVSERDTGNYTVILTNPISKEK 408
Query: 238 TNISLNVI 245
+ ++++
Sbjct: 409 QSHVVSLV 416
Score = 75.9 bits (186), Expect = 4e-15
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 20/139 (14%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + +V + P I + PD+ E E+V+L C A S + W
Sbjct: 534 NKVGRGERVISFHVTR--------GPEIT-LQPDMQPTEQESVSLWCTADRSTFENLTWY 584
Query: 181 FKEKIIANISSG-----------LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
I G + N + + + ++ D G Y C A
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644
Query: 230 KNGAGEVFTNISLNVIKVE 248
++ + + + +E
Sbjct: 645 QDRKTKKRHCVVRQLTVLE 663
Score = 75.2 bits (184), Expect = 6e-15
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKRQYIIKTINSLSN 211
+ E + L+C A I + + K Q + LS
Sbjct: 232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
LTI VT SD G+YTC A +G + + V
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324
Score = 71.3 bits (174), Expect = 1e-13
Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 28/138 (20%)
Query: 146 PNIRP---ITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLAN------ 195
P I I+P + + TL+C P P I W ++ + A
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 196 ------------------MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+NK Q+ + + + T+V + S +Y C A N G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 238 TNISLNVIKVETAVAQPD 255
IS +V + QPD
Sbjct: 541 RVISFHVTRGPEITLQPD 558
Score = 70.2 bits (171), Expect = 3e-13
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 13/127 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + +T + N + ++CR G W +
Sbjct: 32 PRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGS--------EQRVEVTECSD 81
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI---KVETAVAQPDPVYLVAS 262
LTI V +D+G Y C + + + + + Q VY+ +
Sbjct: 82 GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITEN 141
Query: 263 LTTVVTI 269
V I
Sbjct: 142 KNKTVVI 148
Score = 65.9 bits (160), Expect = 7e-12
Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 17/148 (11%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
++ + F S + + +T +N+ V + C + S +
Sbjct: 107 ETDLASVIYVYVQDYR---SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA 163
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ + +S TI + +S +G+ C AK + +
Sbjct: 164 RYPEKRFVPDGN----------RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 213
Query: 241 SLNVIKVETAVAQPDPVYLVASLTTVVT 268
+ V+ V L S ++
Sbjct: 214 YIVVVVGYRIY----DVVLSPSHGIELS 237
Score = 34.0 bits (77), Expect = 0.098
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNV 244
+ ++ C A ++SL++
Sbjct: 6 LLAVALWLCVETRAASVGLPSVSLDL 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 79.7 bits (197), Expect = 8e-18
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY----TFRKLINL 89
+CP+ C C+ TV C + IP + + T L L+DN L R F +L +L
Sbjct: 1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 90 VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
V+L+L NQ+ + + + ++EL+L N I++I+++ F+ + +L
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 80.3 bits (198), Expect = 8e-18
Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 14/127 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P ++ V E V ++C P I W +++ + N I
Sbjct: 20 PKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS-------SNYSNIKIYN 71
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
S S L + + +D G Y C A N G+ L P +
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT------PSSPSIDQVEPY 125
Query: 266 VVTIILT 272
T +
Sbjct: 126 SSTAQVQ 132
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 81.8 bits (202), Expect = 1e-17
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + +IT A + V + + PNI E T+ C A+G+P P+I W
Sbjct: 85 NSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-- 238
+ + N R +++ L I + +D G Y C A N AG ++
Sbjct: 144 KDFLPV-----DPSASNGRIKQLRS----GALQIESSEETDQGKYECVATNSAGVRYSSP 194
Query: 239 -NISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
N+ + V V + P+ V I
Sbjct: 195 ANLYVRVQNVAPRFSIL-PMSHEIMPGGNVNI 225
Score = 79.9 bits (197), Expect = 4e-17
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P D + C+ATG P P++ W K K + N + + I
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFD 58
Query: 206 INSLSNLTIVAV-TMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
++ + L I + T D +Y C A+N GE+ + L V++ + + P +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117
Query: 265 TVVTI 269
VV
Sbjct: 118 KVVER 122
Score = 73.3 bits (180), Expect = 8e-15
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
L + +P + NV ++C A GSP+P +KW+ + +
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-------- 248
Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
+ + + DS YTC A + G + + V + A +
Sbjct: 249 EDDMPV-------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 83.5 bits (207), Expect = 1e-17
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 36 PSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVEL 92
P T C NF IP+ L T+ LDLS N L Y+F L L
Sbjct: 2 PCVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 93 DLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
DLS +IQ + S+ L L L+GNPIQ + AF + L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Score = 68.9 bits (169), Expect = 7e-13
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
LDLS L F L +L L++S+N + + + L+ L S N I
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 126 ITHEAFINVPK----LNLED--FACSPNIRP 150
+ + P LNL FAC+ +
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Score = 66.2 bits (162), Expect = 4e-12
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 56 NFTTIPEQLDVGT--QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
T+ + LD + L + F L NL+ LD+S+ + + I +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 110 ILELRELKLSGNPIQK-ITHEAFINVPKL 137
+ L LK++GN Q+ + F + L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Score = 65.0 bits (159), Expect = 1e-11
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+VL ++ N F +L NL LDLS Q++ + +S+ L+ L +S N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 125 KITHEAFINVPKL 137
+ + + L
Sbjct: 508 SLDTFPYKCLNSL 520
Score = 59.3 bits (144), Expect = 7e-10
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L+ N + F L +L +L + + + + + L+EL ++ N IQ
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 126 IT-HEAFINVPKL 137
E F N+ L
Sbjct: 139 FKLPEYFSNLTNL 151
Score = 56.6 bits (137), Expect = 6e-09
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 69 QVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
+ L+++ N + + F L NL LDLS N+IQ + L + ++ L LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 121 NPIQKITHEAF--INVPKLNL 139
NP+ I AF I + KL L
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTL 207
Score = 55.0 bits (133), Expect = 2e-08
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 69 QVLDLSDNFLDRY-----TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ LDLS N L + +L LDLS+N + + S+ L + +L L + +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL 408
Query: 124 QKIT-HEAFINVPKL 137
++++ F+++ L
Sbjct: 409 KQMSEFSVFLSLRNL 423
Score = 51.6 bits (124), Expect = 2e-07
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 8/80 (10%)
Query: 69 QVLDLSDNFLDRY------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ + +LD Y F L N+ L I+ V + + L+L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCK 315
Query: 123 IQKITHEAFINVPKLNLEDF 142
+ ++ +L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSN 335
Score = 48.9 bits (117), Expect = 2e-06
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 56 NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQF-VPS 104
+I Q+ + LDLS N + F K I L +L L N V
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218
Query: 105 HILDSILELRELKLSGN------PIQKITHEAFINVPKLNLEDF 142
+ + L +L ++K A + L +E+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Score = 44.6 bits (106), Expect = 4e-05
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK--I 126
Q L+L + ++ KL +L L + N+ S + L L LS N +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGC 364
Query: 127 THEAFINVPKL 137
++ L
Sbjct: 365 CSQSDFGTTSL 375
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 79.3 bits (195), Expect = 1e-17
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
++T + ++V K + + + +T++C P P ++W+
Sbjct: 88 LGETEVTKQEHLSVVK--------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
E + ++ + + SLS +++ TC KN E
Sbjct: 140 MPEGVEPAPTAA-----NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 68.1 bits (166), Expect = 1e-13
Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 155 VTAEENENVTLSC---RATGSPVPKIKWIFKEKIIANISSG--------LANMNKRQYII 203
VTA E VTL+ R + P ++ W + G + + + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
+ L + A +S G Y CR K G EV L+V+K T +
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFP 117
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 79.2 bits (195), Expect = 1e-17
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+I DV A +NVTL C A G+PVP I+W K++ + S +
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR---KVLEPMPST----------AEI 160
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S + L I + + D GIY C A+N G+ + V
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 71.8 bits (176), Expect = 6e-15
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 18/141 (12%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY 201
P P+V +E + + L C +W+ E + M+KR++
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV------FITMDKRRF 60
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV-ETAVAQPDPVYLV 260
+ + NL I V SD G Y+C + + + +P P +V
Sbjct: 61 VS---QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV 117
Query: 261 ASLTTVV-----TIILTACFV 276
V + L CF
Sbjct: 118 VQFKDVYALMGQNVTLE-CFA 137
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 78.7 bits (194), Expect = 2e-17
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ +T + + V L+C G P I+W+ ++ N+ ++ +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-------DQLYIPVSE 55
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
+ + L++ +V SD+G Y C+ ++G + + L V
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
Score = 59.8 bits (145), Expect = 6e-11
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 20/93 (21%)
Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
D+ N LSC A G P P I W I + S
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------------------GGPAPSPS 148
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
+ ++ S +++C A N G + ++++
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 78.5 bits (193), Expect = 2e-17
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P ++ + E E L C++ P V W KI + L N ++ ++ +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY---KITDSEDKALMNGSESRFFVS 140
Query: 205 TINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFTNISLNV 244
+ S L I + M +D G Y C + G I+L V
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 55.0 bits (132), Expect = 3e-09
Identities = 7/85 (8%), Positives = 16/85 (18%), Gaps = 18/85 (21%)
Query: 156 TAEENENVTLSCRATGSPVPKI--KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ + L+C S +W+ ++
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----------------DALPGQKTE 52
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFT 238
+ G Y+C
Sbjct: 53 FKVDSDDQWGEYSCVFLPEPMGTAN 77
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 81.8 bits (202), Expect = 2e-17
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 121 NPIQKITHEAFINV--PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIK 178
N + I H + V P ++ E+ L CRA G+P P ++
Sbjct: 296 NKMGSIRHTISVRVKAA----------PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
W+ + + + + +S +Y C N G +
Sbjct: 346 WMVNGEPL--------QSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLA 395
Query: 239 NISLNVIKV 247
N ++V+ V
Sbjct: 396 NAFVSVLDV 404
Score = 74.1 bits (182), Expect = 7e-15
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 125 KITHEAFINVPKLNLEDFACSPNIRPITP--DVTAEENENVTLSCRATGSPVPKIKWIFK 182
+ + + V + P ++ L C A+G P P I W K
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 183 EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
+ + + N NK L I V+ DSG Y C A N G + IS+
Sbjct: 260 GGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Query: 243 NV 244
V
Sbjct: 308 RV 309
Score = 64.1 bits (156), Expect = 2e-11
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL-SNL 212
D + +N+ + C A G+P P W + + R + + +L +
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI------AKDPRVSMRRRSGTLVIDF 79
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVETAVAQPDPVYLV 260
G Y C A+N G +N I L V K + +V
Sbjct: 80 RSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Score = 56.4 bits (136), Expect = 4e-09
Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 25/161 (15%)
Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPD-VTAEENENVTLSCRAT-GSPVPKIKWIFKE 183
+++ + V K P D V +E +TL C G P P I W+
Sbjct: 104 LSNRIRLQVSKS--------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS 155
Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKNGAGEVF---TN 239
+KR +L V + D Y+C A+
Sbjct: 156 MEPITQ-------DKRVSQGHN----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204
Query: 240 ISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCI 280
+L V+ + + ++ ++ CI
Sbjct: 205 FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 80.6 bits (199), Expect = 3e-17
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 12/126 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
++ N TL C+ TG P P +KW + K I + I + L
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-------KYRIQEFKGGYHQLI 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV---TII 270
I +VT D+ +Y RA N G V SL V A + +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEV--EVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 271 LTACFV 276
+ F
Sbjct: 124 IKIPFS 129
Score = 78.3 bits (193), Expect = 2e-16
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 23/139 (16%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
N ++ A + V K++L V A E V++ +G P P I
Sbjct: 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMG------AVHALRGEVVSIKIPFSGKPDPVI 136
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
W + +I N N +I T + S + V D+G Y AKN G
Sbjct: 137 TWQKGQDLIDN--------NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 238 TNISLNVIKVETAVAQPDP 256
+ L+V V PDP
Sbjct: 189 KTVELDVADV------PDP 201
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 82.2 bits (203), Expect = 3e-17
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 18 VYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
V VC L V + P + E + V +N T +P+ L T+ L LS N
Sbjct: 9 VGSFHFVCALALIVGSMTPFSNE-----LESMVDYSNRNLTHVPKDLPPRTKALSLSQNS 63
Query: 78 ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
L L L L LS+N+I+ + H+ +L L +S N +Q I+ ++
Sbjct: 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASL 123
Query: 135 PKLNL 139
L+L
Sbjct: 124 RHLDL 128
Score = 62.2 bits (151), Expect = 9e-11
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKL-INLVELDLSYNQIQFVPSHILDSILELR 114
E + VL+LS N L FR L + LDL N+I +P + + L+
Sbjct: 422 RTCAWAESI----LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQ 476
Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
EL ++ N ++ + F + L
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSL 499
Score = 56.8 bits (137), Expect = 4e-09
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 57 FTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
F +P ++ +VLDL +N + L L EL+++ NQ++ VP + D + L+
Sbjct: 445 FRCLPPKV----KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500
Query: 115 ELKLSGNP 122
+ L NP
Sbjct: 501 YIWLHDNP 508
Score = 45.6 bits (108), Expect = 2e-05
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 68 TQVLDLSDNFLDRYT---FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+ LS + + L+ + N ++ L+ L L N ++
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 125 KITHEAFI--NVPKLNLED 141
A + N+ L D
Sbjct: 391 NFFKVALMTKNMSSLETLD 409
Score = 44.1 bits (104), Expect = 4e-05
Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 5/82 (6%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ + + F + + LS + F+ S L + N
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367
Query: 126 ITHEAFINVPKLNLEDFACSPN 147
+ + L+ N
Sbjct: 368 SVFQGCSTLK--RLQTLILQRN 387
Score = 43.7 bits (103), Expect = 6e-05
Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 4/82 (4%)
Query: 53 KAKNFTTIPEQLDVGTQVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPSHILDS 109
+ L+ + N L L L L N ++
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA-LM 398
Query: 110 ILELRELKLSGNPIQKITHEAF 131
+ L+ + + A+
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAY 420
Score = 36.0 bits (83), Expect = 0.016
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 81 YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF---INVPKL 137
Y+ L +L+ + F + E+ LS + I + L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 138 NLED 141
N
Sbjct: 359 NFTQ 362
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 81.0 bits (200), Expect = 4e-17
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI 185
I+ A + V T +TA + V L C G P+P I W ++
Sbjct: 110 ISRTAKVMVAGP--------LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD 161
Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
+ I + R ++ + L I + DSG+Y C A+N A N + +
Sbjct: 162 LNPIPG-----DSRVVVLPS----GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212
Query: 245 IKVETAVAQPDPVYLVASLTTVV--TIILTACFV 276
+ Q + +++ + +L C V
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLE-CCV 245
Score = 79.5 bits (196), Expect = 1e-16
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
+ +EA + + L+ +V A E ++ L C +G P P W+ E
Sbjct: 202 TRTGNEAEVRI--LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE 259
Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
++I + ++Y + SNL I VT DSG YTC + + L
Sbjct: 260 EVI--------QLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308
Query: 244 V 244
V
Sbjct: 309 V 309
Score = 74.5 bits (183), Expect = 6e-15
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
++ A E+ ++ C +G PVP + W+ ++ + I+ SNL
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP--------SDYFQIVGG----SNLR 368
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
I+ V SD G Y C A+N AG ++ L V K
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 63.7 bits (155), Expect = 2e-11
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 20/147 (13%)
Query: 120 GNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGS-PVPKIK 178
G+ ++ H + S + D NV L+C A VP IK
Sbjct: 4 GSELESSHHHHHHGGRR--------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSL--SNLTIVAVTMSDSGIYTCRAKNGAGE- 235
W I+A M+ R+ + SL N+ D G+Y C A G
Sbjct: 56 WKKDGLILAL------GMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108
Query: 236 -VFTNISLNVIKVETAVAQPDPVYLVA 261
+ + V ++Q + +
Sbjct: 109 IISRTAKVMVAGPLRFLSQTESITAFM 135
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 75.1 bits (185), Expect = 4e-17
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
S + + + L CR I W ++ + ++ + R I
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINW-LRDGV--QLAE-----SNRTRI-- 51
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + + +DSG+Y C + +G T S+NV
Sbjct: 52 ---TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 75.2 bits (185), Expect = 4e-17
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
IT + + + + G+P P ++W + I+ + + ++
Sbjct: 7 ITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHG 62
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
L + T ++G YT AKN G+ IS + +
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 78.0 bits (192), Expect = 5e-17
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
I + V L CRATG P + +W K I N ++
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------ 65
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
L AV + D+G Y CR N F+ L+V
Sbjct: 66 ------ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100
Score = 75.3 bits (185), Expect = 4e-16
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 25/140 (17%)
Query: 124 QKITHEAFINV---PKLNLEDFACSPNIRP---ITP-DVTAEENENVTLSCRATGSPVPK 176
+ + + ++V P+ + + P + L C A GSP+P
Sbjct: 90 FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH 149
Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+W E + + + + V + G Y C N
Sbjct: 150 YQWFKNELPLTHETKK------------------LYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 237 FTNISLNVIKVETAVAQPDP 256
+ +I + PD
Sbjct: 192 DSKKVEIIIDELNNLGHPDN 211
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 75.9 bits (186), Expect = 6e-17
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 26/131 (19%)
Query: 135 PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
PK++L+ P+ + + L +G P P + W + A
Sbjct: 14 PKIHLDCPGRIPD------TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPA 67
Query: 195 NM--------------------NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
+ + ++T S T+ D G+YT KN G
Sbjct: 68 PDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 127
Query: 235 EVFTNISLNVI 245
E N+++ VI
Sbjct: 128 EDQVNLTVKVI 138
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 74.9 bits (184), Expect = 8e-17
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ E + G+P P + W+ + + + + +Y + S
Sbjct: 11 VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRE-----SKIIHVEYYQEGEISEG 65
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
L T ++G YT AKN G I+ + +K V + P
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 80.1 bits (197), Expect = 1e-16
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 16/129 (12%)
Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPK- 176
N + V +N+ I V + ENV L P P+
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIF--------PMINTTVFVNDGENVDLIVEYEAFPKPEH 345
Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+WI+ + + I +S L + + ++ G YT N
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENES----NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Query: 237 FTNISLNVI 245
++ V
Sbjct: 402 AIAFNVYVN 410
Score = 78.2 bits (192), Expect = 5e-16
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 17/127 (13%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + V N +P +T + N L C A G P P I W
Sbjct: 396 NSDVNAAIAFNVYV------------NTKP--EILTYDRLVNGMLQCVAAGFPEPTIDWY 441
Query: 181 FKEKIIANISSGLA---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
F S+ + + +I + +G C+A N G+
Sbjct: 442 FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTS 501
Query: 238 TNISLNV 244
+
Sbjct: 502 AYFNFAF 508
Score = 74.7 bits (183), Expect = 8e-15
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
P + E E T++C W + N +
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE----KYNSWHHGDF 267
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ LTI + ++DSG++ C A N G +L V+
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308
Score = 62.0 bits (150), Expect = 1e-10
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 24/123 (19%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P+I P D+ + + L C G +KW F+ N +
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQ------------- 79
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
+ +++G YTC K+G +I + V +Y T
Sbjct: 80 ----NEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDT 132
Query: 266 VVT 268
+V
Sbjct: 133 LVR 135
Score = 55.4 bits (133), Expect = 1e-08
Identities = 13/123 (10%), Positives = 33/123 (26%), Gaps = 14/123 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ + + +E+ + + C T V + + R
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK-------DLRF----I 163
Query: 206 INSLSNLTIVAVTMS-DSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
+ + + I +V + C V + ++KV A V + +
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK--FILKVRPAFKAVPVVSVSKASY 221
Query: 265 TVV 267
+
Sbjct: 222 LLR 224
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 76.4 bits (188), Expect = 1e-16
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 8/115 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ + E+ C+ G I W L+ +R ++
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------LSPNQQRISVVW 56
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVY 258
+ S LTI + D+GIY C G +++ + + P P
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE 111
Score = 76.0 bits (187), Expect = 2e-16
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ +E E+ + C S P I W K + + + + R ++
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV------ILKKDVRFIVLSN 154
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ L I + +D G Y C + A + VI
Sbjct: 155 ----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 79.7 bits (196), Expect = 1e-16
Identities = 16/135 (11%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 138 NLEDFACSPNIR--PIT---PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
+ ED C+ + V + + ++TL W+FK
Sbjct: 36 SPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHS-------- 87
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
++N + + + ++ I+ +T + +G Y ++ A ++++
Sbjct: 88 --SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL 145
Query: 253 QPDPVYLVASLTTVV 267
+ + + +V
Sbjct: 146 RRPYFRKMENQDALV 160
Score = 70.5 bits (172), Expect = 1e-13
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
N + D ++ E S R P + W F K K
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-------------QKG 373
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+++ +++ G Y A+N + +LN+
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 69.3 bits (169), Expect = 3e-13
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ + P + + E + + C+A + + W + K + + + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
I + +V +D+G YTC + + + + +++ A
Sbjct: 287 IRI---LFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQ 340
Query: 264 TTVVTI 269
Sbjct: 341 YEEFCF 346
Score = 57.8 bits (139), Expect = 2e-09
Identities = 16/135 (11%), Positives = 36/135 (26%), Gaps = 22/135 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
+ T +++ + P EN+ L C + P P ++W+
Sbjct: 124 SEATNYTILFTVSIRN--------TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWV 174
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ + + ++K + + C A+N G T +
Sbjct: 175 LCDSQGESCK------EESPAVVKKEEKV-------LHELFGTDIRCCARNELGRECTRL 221
Query: 241 SLNVIKVETAVAQPD 255
+ P
Sbjct: 222 FTIDLNQTPQTTLPQ 236
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 78.2 bits (192), Expect = 1e-16
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
S N+ + EN+TL C G+ V +W + K + + +
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
S L I + + DSG YTC + ++N+ VE
Sbjct: 241 R----SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280
Score = 59.7 bits (144), Expect = 3e-10
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 14/100 (14%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ P P++ + L+C + + W + + +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEP----------PQEMAKAQDGT 48
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
S LT+ +T D+G Y C + G I V
Sbjct: 49 FSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Score = 52.8 bits (126), Expect = 5e-08
Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 19/102 (18%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
+ E +T+ CR T P + + +
Sbjct: 100 AEELFIFLTEITEITIPCRVTD-PQLVVTL------------------HEKKGDVALPVP 140
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
+ + + Y C+ G EV ++ +++
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSI 182
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 78.1 bits (193), Expect = 2e-16
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 35/133 (26%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR-------------- 80
CPS C C + C +K T++P + L+L N L
Sbjct: 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 81 ---------------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ +L LDLS+N + + S+ + +L L + +++
Sbjct: 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 115
Query: 126 ITHE-AFINVPKL 137
++ F+++ L
Sbjct: 116 MSEFSVFLSLRNL 128
Score = 72.7 bits (179), Expect = 1e-14
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+VL ++ N F +L NL LDLS Q++ + +S+ L+ L +S N
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 125 KITHEAFINVPKL 137
+ + + L
Sbjct: 213 SLDTFPYKCLNSL 225
Score = 70.4 bits (173), Expect = 7e-14
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
LDLS L F L +L L++S+N + + + L+ L S N I
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 126 ITHEAFINVPK----LNLED--FACSPNIRP 150
+ + P LNL FAC+ +
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268
Score = 67.7 bits (166), Expect = 6e-13
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 69 QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP-I 123
+ LD + L + F L NL+ LD+S+ + + I + + L LK++GN
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 124 QKITHEAFINVPKL 137
+ + F + L
Sbjct: 164 ENFLPDIFTELRNL 177
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 72.8 bits (179), Expect = 2e-16
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ L C A GSP+P +W E + + + L
Sbjct: 12 SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------------------YM 53
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ V + G Y C N + +I
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 73.8 bits (181), Expect = 2e-16
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
P I T A E + C +P P +I W +KE ++ + +SG +Y ++
Sbjct: 15 PIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG-------RYTVE 66
Query: 205 TINS----LSNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNV 244
TI++ +S LTI + +D IY C A N G I L
Sbjct: 67 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 73.6 bits (180), Expect = 3e-16
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 145 SPNIRPIT----PDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKR 199
I + + E + L+C A I + + K
Sbjct: 4 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
Q + LS LTI VT SD G+YTC A +G + + V
Sbjct: 64 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 75.4 bits (185), Expect = 3e-16
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
D + +++TL+ + P ++ R K I
Sbjct: 102 TANSDTHLLQGQSLTLTLESPPGSSPSVQC-------------------RSPRGKNIQGG 142
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
L++ + + DSG +TC +V I + V+
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178
Score = 68.5 bits (167), Expect = 6e-14
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKII------ANISSGLANMNKRQYIIKTINS 208
V ++ + V L+C A+ + W +I + ++ G + +N R +++
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
N L I + + DS Y C ++ EV + +T + Q + L
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 78.3 bits (193), Expect = 3e-16
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N K + + PN I D+ E+V C+A G P P +W
Sbjct: 279 NSRGKNVAKGQLTF--------YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW- 329
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
K G + + + I+ L I V +SD+G+Y C A+N G +F++
Sbjct: 330 LKN--------GDPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSA 377
Query: 241 SLNVI 245
L+VI
Sbjct: 378 ELSVI 382
Score = 76.0 bits (187), Expect = 2e-15
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P I P V AE+ V L C A G+PVP I W + + +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA------------R 252
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S L I D+G Y C A+N G+ L
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Score = 61.0 bits (148), Expect = 2e-10
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
V+ + + L C S WIF E N+R +T NL
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-------DNRRFVSQET----GNL 159
Query: 213 TIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNVIKVETAVAQPDPVYLVASLTTVV--- 267
I V SD G YTC N V + +++ + + + +P V TV
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219
Query: 268 --TIILTACFV 276
T+ L CF
Sbjct: 220 GTTVKLE-CFA 229
Score = 58.3 bits (141), Expect = 1e-09
Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 11/107 (10%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
E + V LSC G+P P I+W + ++ SL L
Sbjct: 18 PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--------DIGMDFRYSVVDGSL--LIN 67
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLV 260
D+G Y C A N G + + L +E + V
Sbjct: 68 NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 79.0 bits (195), Expect = 3e-16
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 29/126 (23%)
Query: 39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL-------------------- 78
C T C NF IP+ L T+ LDLS N L
Sbjct: 3 CVEVVPN--ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 79 -------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
+ ++ L +L L L+ N IQ + + L++L + + +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 132 INVPKL 137
++ L
Sbjct: 121 GHLKTL 126
Score = 73.6 bits (181), Expect = 2e-14
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+VL ++ N F +L NL LDLS Q++ + +S+ L+ L ++ N ++
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 125 KITHEAFINVPKL---NLED--FACS-PNIRPIT---PDVTAEENENVTLSCRATGSPV 174
+ F + L L + CS P I ++ + +E + C +G PV
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK--CSGSGKPV 564
Score = 71.7 bits (176), Expect = 8e-14
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 56 NFTTIPEQLD--VGTQVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
T+ + LD + L + F L NL+ LD+S+ + + I +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 110 ILELRELKLSGNPIQK-ITHEAFINVPKL 137
+ L LK++GN Q+ + F + L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Score = 64.4 bits (157), Expect = 2e-11
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L+ N L F L +L +L + + + + + L+EL ++ N IQ
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 126 I-THEAFINVPKL 137
E F N+ L
Sbjct: 139 FKLPEYFSNLTNL 151
Score = 61.3 bits (149), Expect = 2e-10
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 69 QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
+ L+++ N + F L NL LDLS N+IQ + L + ++ L LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 121 NPIQKITHEAF--INVPKLNLED 141
NP+ I AF I + KL L +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRN 209
Score = 59.3 bits (144), Expect = 7e-10
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 69 QVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ LDLS N L + +L LDLS+N + + S+ L + +L L + +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL 408
Query: 124 QKITHE-AFINVPKL 137
++++ F+++ L
Sbjct: 409 KQMSEFSVFLSLRNL 423
Score = 54.7 bits (132), Expect = 2e-08
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 56 NFTTIPE-QLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ + + G Q L+L + ++ KL +L L + N+ S + L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350
Query: 115 ELKLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
L LS N + + + +L+ S N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 49.7 bits (119), Expect = 9e-07
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 56 NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQF-VPS 104
+I Q+ + LDLS N + F+++ L +L L N V
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218
Query: 105 HILDSILELRELKL------SGNPIQKITHEAFINVPKLNLEDF 142
+ + L +L + ++K A + L +E+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 72.9 bits (179), Expect = 4e-16
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I D+ + E TL+C+A G P P I+W K + + + + ++ +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEW---YKGGERVETDKDDPRSHRMLLPS 66
Query: 206 INSLSNLTIVA--VTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
SL L IV + D G+Y C A+N GE + + SL V
Sbjct: 67 -GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 75.3 bits (185), Expect = 6e-16
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I D+ ++NE TL+C+ G P P I+W + ++ + K
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVST-----NEKKSHRVQFKD 64
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
T+ D G Y C AKN G+ + + SL +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
Score = 73.7 bits (181), Expect = 2e-15
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 146 PNIRPITPDVTAEENENVTLSC-RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ R D + E L C G P P + WI + ++ + + R I+
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
NL I V D G Y C A+N G ++
Sbjct: 169 G----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 72.7 bits (178), Expect = 6e-16
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 2/118 (1%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
TA E + + G P P ++W+F ++ + +
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL--NETSFIFTEFLEPAANETVRHG 63
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
L + T ++G YT A N G+ +I + DP+ S +
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 76.8 bits (189), Expect = 8e-16
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + T++ I + P+ + D A+ ++ SC A+G P P ++W
Sbjct: 278 NIKGRDTYQGRIIIHAQ--------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW- 328
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
++ G ++ + + L + + DSG+Y C A+N G V+ +
Sbjct: 329 LRD--------GQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASA 376
Query: 241 SLNV 244
L V
Sbjct: 377 ELTV 380
Score = 75.3 bits (185), Expect = 3e-15
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 121 NPIQKITHEAFINVPKLNL---EDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPK 176
+ I IT F +L+L + +P+I+ P D A + VTL C A G+PVP+
Sbjct: 179 SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ 238
Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
IKW K K ++S L I V D G Y C A+N G
Sbjct: 239 IKW-RK--------------LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 283
Query: 237 FTNISLNV 244
+ +
Sbjct: 284 TYQGRIII 291
Score = 61.8 bits (150), Expect = 9e-11
Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 20/145 (13%)
Query: 142 FACSPNIRPITPD-VTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKR 199
F D V E V +C P +W+ E + +R
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-----IPADGRR 151
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV----IKVETAVAQPD 255
T NL I SD G Y+C A + + ++ + E A
Sbjct: 152 FVSQTT----GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207
Query: 256 PVYLVASLTTVV----TIILTACFV 276
+ T + L CF
Sbjct: 208 SIKAKFPADTYALTGQMVTLE-CFA 231
Score = 58.3 bits (141), Expect = 1e-09
Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
E VTL+CRA +P +W + M L +
Sbjct: 17 PEGSAEEKVTLTCRARANPPATYRWKMNGTEL--------KMGPDSRYRLVAGDL--VIS 66
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
V D+G Y C A N G V + + Q
Sbjct: 67 NPVKAKDAGSYQCVATNARGTVVS----REASLRFGFLQEFSA 105
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 72.0 bits (177), Expect = 8e-16
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
I + DV +E + T CR + + + W + + N+ I
Sbjct: 17 IEDLE-DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA--------NELNEIDAQPG 67
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
LT+ + + DSG AG+ + +L V + + ++ P
Sbjct: 68 GYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRSGP 112
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 75.4 bits (186), Expect = 9e-16
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 29/135 (21%)
Query: 30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN------------- 76
+ + C C K +V C +K T IP + T+ LDL N
Sbjct: 3 ALCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60
Query: 77 --------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
L F++L NL L ++ N++Q +P + D ++ L EL+L N
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 123 IQKITHEAFINVPKL 137
++ + F ++ KL
Sbjct: 121 LKSLPPRVFDSLTKL 135
Score = 61.5 bits (150), Expect = 5e-11
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 48 ETVLCKAKNFTTIPEQLDVG---TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQF 101
ET+ +P + L L N L F L L L L YN++Q
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
+P + D + L+EL+L N ++++ AF + +L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Score = 57.3 bits (139), Expect = 1e-09
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L N L + F KL +L EL L NQ++ VP D + EL+ LKL N +++
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 126 ITHEAFINVPKLN 138
+ AF ++ KL
Sbjct: 196 VPEGAFDSLEKLK 208
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ L L +N L F KL L L L NQ++ VP DS+ +L+ L+L NP
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 76.5 bits (188), Expect = 1e-15
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ + ++ ++VT+ C+ TG P P + W K ++ + +
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG----------GRATVTD-- 359
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S L I V D G Y CRA N G+ + + V
Sbjct: 360 --SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 75.7 bits (186), Expect = 2e-15
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + ++ D+ A+ + + C +P+ + K + +
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED-------RITRHN 265
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
S L D G+YTC NG G+ + + L V
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Score = 68.8 bits (168), Expect = 4e-13
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
P ++ +V EN L C G+ K W K N + ++
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY--------NWQEHNAALR 58
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
+L + SD G Y C A+ AG + IS + + A+ +
Sbjct: 59 KDEG--SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE 114
Score = 64.2 bits (156), Expect = 2e-11
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 6/131 (4%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
T + T E L C P P I W K A+ ++ + + ++R
Sbjct: 97 KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW-KKRLSGADPNADVTDFDRRI 155
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE---VFTNISLNVIKVETAVAQPDPV 257
+L + +SD Y C AKN A + V + + + + + +PV
Sbjct: 156 TAGPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPV 214
Query: 258 YLVASLTTVVT 268
S +
Sbjct: 215 PQYVSKDMMAK 225
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 75.5 bits (185), Expect = 1e-15
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
P + ++ + T+ C W+ +I+ N R
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
LTI + + DSG++ C A N G +L V+
Sbjct: 249 ERQE--TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 60.5 bits (146), Expect = 2e-10
Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 12/123 (9%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ + + +E+ + + C T V + I + K IK
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
C A+ + ++ +KV A+ V + +
Sbjct: 151 N----------VKRAYHRLCVRCAAQRDGTWLHSDKFT--LKVREAIKAIPVVSVPETSH 198
Query: 265 TVV 267
+
Sbjct: 199 LLK 201
Score = 57.8 bits (139), Expect = 1e-09
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 23/123 (18%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P+I P ++ E + ++L+C ++W FK
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNE----------------MV 52
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
N + + +G YTC NG ++I + V P++
Sbjct: 53 ENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDA 109
Query: 266 VVT 268
+V
Sbjct: 110 LVR 112
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 74.1 bits (181), Expect = 1e-15
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
+ + E + L+C A W + + + K Q + L
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL-VNRDLKTQSGSEMKKFL 170
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
S LTI VT SD G+YTC A +G + + V
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206
Score = 55.2 bits (132), Expect = 4e-09
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
F S + + +T +N+ V + C + + + + G
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDG--------- 55
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ +S TI + +S +G+ C AK + + + V+
Sbjct: 56 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 77.0 bits (189), Expect = 1e-15
Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 10/123 (8%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
S V + + ++TL W+FK ++N + +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHS----------SLNCQPHFDL 97
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
+ ++ I+ +T + +G Y ++ A ++++ + + +
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157
Query: 265 TVV 267
+V
Sbjct: 158 ALV 160
Score = 74.0 bits (181), Expect = 1e-14
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
N + D ++ E S R P + W F K K +
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-------------KGL 374
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
++ +++ G Y A+N + +LN+ + +A+
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427
Score = 68.6 bits (167), Expect = 7e-13
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
P + + E + + C+A + + W + K + + + + I
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI---LF 291
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
+ +V +D+G YTC + + + +++ A
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346
Score = 66.6 bits (162), Expect = 3e-12
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN--MNKRQYIIKTINSLSNLTIV 215
E SC + G P+P W N + + N++ +S+ T+
Sbjct: 420 AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ C A N G I LN
Sbjct: 480 MSEAIKGFLVKCCAYNSLGTSCETILLNS 508
Score = 56.6 bits (136), Expect = 5e-09
Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 22/135 (16%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
+ T +++ + P EN+ L C + P P ++W+
Sbjct: 124 SEATNYTILFTVSIRN--------TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWV 174
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
++ + + ++ + C A+N G T +
Sbjct: 175 L-------------CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 241 SLNVIKVETAVAQPD 255
+ P
Sbjct: 222 FTIDLNQTPQTTLPQ 236
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 72.6 bits (179), Expect = 1e-15
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY---TFRKLINLVE 91
CPS C C TV C K+ ++P + TQVL L DN + + F +L L
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
LDL NQ+ +P+ + D + +L +L L+ N ++ I AF N+ L
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 72.7 bits (179), Expect = 2e-15
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
CPS C C + V C+ ++P + Q L L++N L+ F L+NL +
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L + N++ +P+ + D + +L +L L+ N ++ I AF N+ L
Sbjct: 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 73.3 bits (180), Expect = 2e-15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I D+ + E TL+C+A G P P I+W + + + ++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP----RSHRMLLP 65
Query: 206 INSL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
SL + + D G+Y C A+N GE + + SL V
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 71.8 bits (176), Expect = 7e-15
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 21/122 (17%)
Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEK 184
++H+A + V L + R DV E + C+ G P P I W
Sbjct: 99 VSHDASLEVAIL-------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGS 151
Query: 185 IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI-SLN 243
+ + + I+ L I SD+G Y C N GE + + L
Sbjct: 152 PL--------DDKDERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199
Query: 244 VI 245
V+
Sbjct: 200 VL 201
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 70.9 bits (173), Expect = 2e-15
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 5/111 (4%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA 194
+DF P I +A +V+ +C A S W + + + +
Sbjct: 3 FVCDDFPX-PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD-AEMEN 60
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI-SLNV 244
+ R + + + L + V + G Y C N G ++ L +
Sbjct: 61 YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 70.2 bits (172), Expect = 2e-15
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 16/101 (15%)
Query: 146 PNIRPITP-DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ + +VT C A + SP + W + N
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-------- 61
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
LTI V SD+G Y C N +L+V
Sbjct: 62 ------GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 75.9 bits (187), Expect = 3e-15
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 35/134 (26%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN------------------ 76
S C +C + +PE L +DLS N
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQF 58
Query: 77 ----------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ-- 124
+ TFR L +L+ L L YNQ + + + + L L L+ +
Sbjct: 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 125 KITHEAFINVPKLN 138
++ F + L
Sbjct: 119 VLSGNFFKPLTSLE 132
Score = 68.6 bits (168), Expect = 7e-13
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 48 ETVLCKAKNFTTIPEQL---DVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQF 101
+T + + + + L L+ N +D F L +L++L+LS N +
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
+ S + +++ +L L LS N I+ + ++F+ +P L
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 67.8 bits (166), Expect = 1e-12
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L+LS NFL D F L L LDLSYN I+ + + L+EL L N ++
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 126 ITHEAFINVPKLN 138
+ F + L
Sbjct: 386 VPDGIFDRLTSLQ 398
Score = 61.7 bits (150), Expect = 1e-10
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 69 QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGNP 122
+VL L+ L F+ L +L L L N I+ + P+ ++ L L+ N
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165
Query: 123 IQKITHEAFINVPKLNLEDF 142
++ I E +N +
Sbjct: 166 VKSICEEDLLNFQGKHFTLL 185
Score = 55.9 bits (135), Expect = 7e-09
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 78 LDRYTFRKLI--NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVP 135
D +TF+ L + DLS ++I + + +L +L L+ N I KI AF +
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 136 KL 137
L
Sbjct: 324 HL 325
Score = 47.0 bits (112), Expect = 6e-06
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 69 QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSI--LELRELKLSGNP 122
++L L DN + F + LDL++N+++ + L + L+LS
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 123 IQKITHEAFINVPKLNL 139
+Q + N
Sbjct: 192 LQDMNEYWLGWEKCGNP 208
Score = 40.5 bits (95), Expect = 7e-04
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 69 QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK-------- 117
+ D+++ +L K ++ LDLS N + + + +++
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250
Query: 118 -----LSGNPIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
+ + F + ++ S + I + V
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 69.7 bits (171), Expect = 3e-15
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
VTL+C P P+I W+ + S L
Sbjct: 19 GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------------------VLI 60
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
+ + D G Y+C A + + + ++++ +E
Sbjct: 61 LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 76.1 bits (187), Expect = 3e-15
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 49 TVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSH 105
V +P+ L T +L++S N+ L L L L +S+N+IQ++
Sbjct: 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKLNL 139
+ EL L LS N + KI+ +N+ L+L
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97
Score = 63.0 bits (153), Expect = 5e-11
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSGNPIQKIT 127
+ LDLS N L + + +NL LDLS+N +P ++ +L+ L LS ++K +
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 128 HEAFINVPKLNLEDFACSPNIRPITPD 154
++ + P+
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPE 158
Score = 62.2 bits (151), Expect = 9e-11
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 69 QVLDLSDNFLDRYTFRKL-INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L++S N L FR L + LDL N+I+ +P ++ L+EL ++ N ++ +
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKL-EALQELNVASNQLKSVP 460
Query: 128 HEAFINVPKL---NLED--FACSPN 147
F + L L + CS
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 57.2 bits (138), Expect = 3e-09
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 60 IPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELREL 116
I L +VLDL N + + KL L EL+++ NQ++ VP I D + L+++
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Query: 117 KLSGNP 122
L NP
Sbjct: 474 WLHTNP 479
Score = 52.6 bits (126), Expect = 1e-07
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 56 NFTTIPEQLDV-----GTQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHI 106
+ + ++ Q LD+S N + +L+ L++S N +
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 107 LDSILELRELKLSGNPIQKITHEAF 131
L ++ L L N I+ I +
Sbjct: 419 LPP--RIKVLDLHSNKIKSIPKQVV 441
Score = 52.2 bits (125), Expect = 1e-07
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ + + + + K+ + LD S N + + EL L L N +++
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362
Query: 126 ITHEAFINVPKLNLEDFACSPN 147
++ A + +L+ S N
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQN 384
Score = 49.1 bits (117), Expect = 1e-06
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 70 VLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
+ + + F Y + N+ + + + + V I L S N +
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339
Query: 127 THEAFINVPKL 137
E ++ +L
Sbjct: 340 VFENCGHLTEL 350
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 75.0 bits (184), Expect = 3e-15
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 31/126 (24%)
Query: 121 NPIQKITHEAFINV--PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIK 178
N + + E + V P + + P T + +C+ TG+P+ +
Sbjct: 291 NSVGGESVETVLTVTAP----------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
W K+ S L I +V D G+Y C +N
Sbjct: 341 W-MKDGKAIGHSES------------------VLRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 239 NISLNV 244
+ L +
Sbjct: 382 SAELKL 387
Score = 75.0 bits (184), Expect = 4e-15
Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ + ++L C A G P P +W +K G +
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRW-YKF------IEGTTRKQAVVLNDRVKQ 267
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L I + DSG Y C N G L V
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Score = 63.8 bits (155), Expect = 2e-11
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
T + + + C+A+G+P+P+I WI + G ++ I+S
Sbjct: 11 TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG----------LRQISSDGK 60
Query: 212 LTIVAVTMSD------SGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
L D + +Y C A+N G + + ++ + + + A + +++
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR 117
Score = 57.3 bits (138), Expect = 3e-09
Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 18/145 (12%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNK 198
+ + + C V + W E+ + +
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA---EYDG 156
Query: 199 RQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKNGAGE---VFTNISLNVIKVETAVAQP 254
+ ++ + L I V D Y CR K+ + VI + + P
Sbjct: 157 KYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP 212
Query: 255 DPVYLVASLTTVV---TIILTACFV 276
LV ++ TI L C
Sbjct: 213 RTPALVQKPLELMVAHTISLL-CPA 236
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 72.8 bits (179), Expect = 5e-15
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
CPS C C TV C++K ++P + Q+L L DN L+ F LINL E
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKE 68
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
L L NQ+ +P + DS+ +L L L N + +
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Score = 37.4 bits (87), Expect = 0.004
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ L + N L +L +L L L NQ++ +P D + L L GNP
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 71.6 bits (176), Expect = 7e-15
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 30/131 (22%)
Query: 33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---------------- 76
+ CP+ C C V C K +P+ + L L N
Sbjct: 2 SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57
Query: 77 ----------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
L +F + L+ L LSYN+++ +P D + LR L L GN I +
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 127 THEAFINVPKL 137
AF ++ L
Sbjct: 118 PEGAFNDLSAL 128
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 72.8 bits (179), Expect = 7e-15
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT---FRKLINLVE 91
C + C GK+ V C+ K+ ++P + T+ LDL L + FR L L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
L+L YNQ+Q + + + D + EL L L+ N + + F ++ +L
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109
Score = 57.4 bits (139), Expect = 1e-09
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 68 TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
L L N L F +L L EL L+ NQ+Q +P+ D + L+ L LS N +Q
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 125 KITHEAFINVPKL 137
+ H AF + KL
Sbjct: 169 SVPHGAFDRLGKL 181
Score = 41.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ L L+ N L F KL NL L LS NQ+Q VP D + +L+ + L GN
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 74.3 bits (183), Expect = 7e-15
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+P + VL L N L R F L L +S N ++ + +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
L+ L+LS N + + ++ N+
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195
Score = 73.2 bits (180), Expect = 2e-14
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+P L ++L+L+D + D Y F + +L + +N I+++P H+ +
Sbjct: 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
+ L L L N + + F N PKL
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKL 143
Score = 68.1 bits (167), Expect = 7e-13
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ + ++V +L L N L LVE+DLSYN+++ + H + L
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275
Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
L +S N + + + +P L
Sbjct: 276 RLYISNNRLVAL-NLYGQPIPTL 297
Score = 65.1 bits (159), Expect = 8e-12
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
Q L LS N L + +L ++SYN + + I + EL S N I +
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSINVVRG 222
Query: 129 EAFINVPKLNL 139
+ + L L
Sbjct: 223 PVNVELTILKL 233
Score = 63.9 bits (156), Expect = 2e-11
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
I V + L +S+N L + + L LDLS+N + V +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QF 317
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
L L L N I + + L L
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348
Score = 61.6 bits (150), Expect = 1e-10
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
+T+ + V + LD S N ++ + L L L +N + L + L E
Sbjct: 197 LLSTLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVE 252
Query: 116 LKLSGNPIQKITHEAFINVPKL 137
+ LS N ++KI + F+ + +L
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRL 274
Score = 58.1 bits (141), Expect = 1e-09
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 57 FTTIPEQLDVGTQVLDLSDNFLDRYTFR-----KLINLVELDLSYNQIQFVPSHILDSIL 111
+ I L D+ + + + L N + + ++ +P+ +LDS
Sbjct: 10 YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69
Query: 112 ELRELKLSGNPIQKITHEAFINVPKL 137
++ L L+ I++I AF +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTI 95
Score = 38.9 bits (91), Expect = 0.002
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+ L L N + L L LS+N L + +
Sbjct: 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 74.0 bits (181), Expect = 7e-15
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 152 TPDVTAEENENVTLSC-------RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
E E V L C A+ SP + W + + +
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTV------PGEEETRMWA 78
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQ--PDPVYLVAS 262
+L ++ DSG Y C +N + +I L V + A P L S
Sbjct: 79 QDGAL---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135
Query: 263 LTTVVTIILTACFV 276
+ V+ + F
Sbjct: 136 TSGVLVCPDLSEFT 149
Score = 60.5 bits (146), Expect = 2e-10
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 18/153 (11%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVT---LSCRATGSPVPKI 177
N + V E+ +T + + LS KI
Sbjct: 102 NASYCDKMSIELRV----FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+W ++ +K ++ ++L + V + D+G Y C
Sbjct: 158 QWYKDSLLL----------DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Query: 238 TNISLNV-IKVETAVAQPDPVYLVASLTTVVTI 269
NI+ ++ ++++ + PV + T ++
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASL 240
Score = 59.7 bits (144), Expect = 3e-10
Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
P I ++A +T+ C+ TG+P+ + W + + +
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 203 IKTINS----LSNLTIVAVTMSDSGI-YTCRAKNGAGEVFTNISL 242
+ N+ L VT D + + C N ++
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 74.6 bits (183), Expect = 1e-14
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 24/123 (19%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ N++LSC A +P + W+ I +
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-------------- 427
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
L I +T +SG+YTC+A N A + T A+ + ++ +
Sbjct: 428 ------LFISNITEKNSGLYTCQANNSASGHSRTTVKTI----TVSAELPKPSISSNNSK 477
Query: 266 VVT 268
V
Sbjct: 478 PVE 480
Score = 72.3 bits (177), Expect = 6e-14
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 20/100 (20%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
PD + N+ LSC + +P P+ W +
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV-------------- 605
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
L I +T +++G Y C N A +I ++
Sbjct: 606 ------LFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 68.4 bits (167), Expect = 9e-13
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 17/137 (12%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + E+ + V +C W
Sbjct: 447 NSASGHSRTTVKTI----TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWW 501
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN- 239
+ + ++ N LT+ VT +D+ Y C +N ++
Sbjct: 502 VNGQSLPVSPR-----------LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP 550
Query: 240 ISLNVIKVETAVAQPDP 256
++L+V+ P
Sbjct: 551 VTLDVLYGPDTPIISPP 567
Score = 67.7 bits (165), Expect = 2e-12
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 33/137 (24%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ + EN+ LSC A +P + W
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTF-------------------- 243
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG--EVFTNISLNVIKVETAVAQPDPVYLVASL 263
S L I +T+++SG YTC+A N T ++ V A+P ++ ++
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY------AEPPKPFITSNN 297
Query: 264 TTVV----TIILTACFV 276
+ V + LT C
Sbjct: 298 SNPVEDEDAVALT-CEP 313
Score = 64.2 bits (156), Expect = 2e-11
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
E+ + V +C W + + ++
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR-----------LQ 158
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF-TNISLNV 244
N LT+ VT +D+ Y C +N ++ LNV
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV 199
Score = 63.8 bits (155), Expect = 3e-11
Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 17/140 (12%)
Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN--ISSGLANMNKRQYIIK 204
I +V E + V L + W E++ N I + +
Sbjct: 3 TIESTPFNVA--EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 205 -----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
I ++L I + +D+G YT + P P
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLV----NEEATGQFRVYPELPKPSIS 116
Query: 260 VASLTTVV---TIILTACFV 276
+ V + T C
Sbjct: 117 SNNSKPVEDKDAVAFT-CEP 135
Score = 63.4 bits (154), Expect = 4e-11
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 18/143 (12%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
N + + + P I E+ + V L+C + W+
Sbjct: 269 NSDTGLNRTTVTT---ITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN- 239
+ + + L+N N+ LT+++VT +D G Y C +N ++
Sbjct: 325 NNQSLPVSPRLQLSNDNR------------TLTLLSVTRNDVGPYECGIQNELSVDHSDP 372
Query: 240 ISLNVIKV-ETAVAQPDPVYLVA 261
+ LNV+ + P Y
Sbjct: 373 VILNVLYGPDDPTISPSYTYYRP 395
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 74.2 bits (182), Expect = 1e-14
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+P + VL L N L R F L L +S N ++ + +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
L+ L+LS N + + ++ N+
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201
Score = 73.0 bits (179), Expect = 3e-14
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+P L ++L+L+D + D Y F + +L + +N I+++P H+ +
Sbjct: 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
+ L L L N + + F N PKL
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKL 149
Score = 68.4 bits (167), Expect = 1e-12
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ + ++V +L L N L D LVE+DLSYN+++ + H + L
Sbjct: 222 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
L +S N + + + +P L
Sbjct: 282 RLYISNNRLVAL-NLYGQPIPTL 303
Score = 64.9 bits (158), Expect = 1e-11
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N I + T Q L LS N L + +L ++SYN + + I
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----A 212
Query: 113 LRELKLSGNPIQKITHEAFINVPKLNLED 141
+ EL S N I + + + L L+
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQH 241
Score = 64.6 bits (157), Expect = 1e-11
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
I V + L +S+N L + + L LDLS+N + V +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QF 323
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
L L L N I + + L L
Sbjct: 324 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354
Score = 61.1 bits (148), Expect = 2e-10
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
+T+ + V + LD S N ++ + L L L +N + L + L E
Sbjct: 203 LLSTLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVE 258
Query: 116 LKLSGNPIQKITHEAFINVPKL 137
+ LS N ++KI + F+ + +L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRL 280
Score = 60.7 bits (147), Expect = 3e-10
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 50 VLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFR-----KLINLVELDLSYNQIQFVPS 104
V + + I L D+ + + + L N + + ++ +P+
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 105 HILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+LDS ++ L L+ I++I AF +
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101
Score = 37.2 bits (86), Expect = 0.008
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+ L L N + L L LS+N L + +
Sbjct: 327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 380
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 73.3 bits (179), Expect = 1e-14
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 22/125 (17%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
D + +++TL+ + P ++ R K I
Sbjct: 101 TANSDTHLLQGQSLTLTLESPPGSSPSVQC-------------------RSPRGKNIQGG 141
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
L++ + + DSG +TC +V I + V+ + A VY +
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSF 198
Query: 270 ILTAC 274
L
Sbjct: 199 PLAFT 203
Score = 67.1 bits (163), Expect = 2e-12
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKII------ANISSGLANMNKRQYIIKTINS 208
V ++ + V L+C A+ + W +I + ++ G + +N R +++
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
N L I + + DS Y C ++ EV + +T + Q + L
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 116
Score = 49.0 bits (116), Expect = 1e-06
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVT-----------LSCRA 169
+K+ + I V F + +I E + + L +A
Sbjct: 163 QNQKKVEFKIDIVVL-----AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA 217
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
+ K F K + K Q K L+ L + SG T
Sbjct: 218 ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT-LPQALPQYAGSGNLTLAL 276
Query: 230 KNGAGEVFTNISLNVIKVE 248
+ G++ ++L V++
Sbjct: 277 EAKTGKLHQEVNLVVMRAT 295
Score = 46.3 bits (109), Expect = 8e-06
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 19/97 (19%)
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
+ + V L+C G PK+ K + K
Sbjct: 285 QEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLEN------------------KEAKV 326
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
V V ++G++ C + G+V ++ V+
Sbjct: 327 SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 73.3 bits (180), Expect = 2e-14
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 138 NLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMN 197
+ P E ++ CR S P + W ++ +
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL---------KQ 525
Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+Y+ + + LTI V D G YT RAKN G + LNV
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 71.6 bits (175), Expect = 3e-14
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P + + +V + ++ C +P + W + + R +++
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED--------SPR-LEVES 53
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV---IKVETAVAQPDPVYLVAS 262
+ + +T + M D GIY+C + G + + + + P V S
Sbjct: 54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113
Query: 263 LTTVVTIILTACFVVLCI 280
V + +
Sbjct: 114 ELAVEILEKGQVRFWMQA 131
Score = 68.5 bits (167), Expect = 4e-13
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
NV L C+ I W E+ I+ ++ K + +
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---------DEKHDFK--DGICT 277
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L I + D+GIY K+ G+ + + L
Sbjct: 278 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 66.9 bits (163), Expect = 1e-12
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 7/131 (5%)
Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI 185
I E + L+ E + ++ E+ + S K+ +IF EK
Sbjct: 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE 148
Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
I K + I + + + + D G YT + ++G + + L
Sbjct: 149 IFEGP-------KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 201
Query: 246 KVETAVAQPDP 256
+ + +
Sbjct: 202 VFKKLQKEAEF 212
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 66.7 bits (163), Expect = 3e-14
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 139 LEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK 198
L + A + + + + L CR I W+ + +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE--------SN 53
Query: 199 RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
R I + + +DSG+Y C + +G T S+NV
Sbjct: 54 RTRITG-----EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 69.5 bits (170), Expect = 3e-14
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
++T TL C+ P++ W+ +I+ S + + +S L
Sbjct: 11 NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQL 70
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
I ++ +SD+G Y C G + + +
Sbjct: 71 RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103
Score = 60.3 bits (146), Expect = 5e-11
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 18/94 (19%)
Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
D T N LSC+A G P P + W ++ +
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLW-LQD---------------AVPLATAPGHGPQR 158
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVI 245
++ ++ + ++C A N G + ++ V+
Sbjct: 159 SLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 69.6 bits (170), Expect = 4e-14
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
V E V +A S K+ +IF EK I K + I + +
Sbjct: 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-------GPKYKMHIDRNTGIIEM 63
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
+ + D G YT + ++G + + L + + +
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 106
Score = 66.9 bits (163), Expect = 3e-13
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
NV L C+ I W E+ I + +
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI-----------SVDEKHDFKDGICT 172
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L I + D+GIY K+ G+ + + L
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 68.4 bits (168), Expect = 5e-14
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 31/130 (23%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
CPS C C + C +K T++P + L+L N L D+ T
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 83 ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F KL L L L N++Q +P+ + D + +L+EL L N ++ +
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 128 HEAFINVPKL 137
F + L
Sbjct: 117 DGIFDRLTSL 126
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 68.9 bits (168), Expect = 9e-14
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P+ D + E + L C GS + +W K S +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEW-QKL------SDSQTMPTPWLAEMT 174
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ +++ + SG Y+C +N G + L+V+
Sbjct: 175 S----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 61.2 bits (148), Expect = 4e-11
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 155 VTAEENENVTLSCRATGSPVPK----IKWIFKEKIIAN-------------ISSGLANMN 197
+ + E L C+ T SP + I+W+ + ++
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69
Query: 198 KRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
R + + + + + +SD G Y C+ K G L V+
Sbjct: 70 GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 70.1 bits (172), Expect = 9e-14
Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
C + V C +N T +P L T +L LS+N L YT
Sbjct: 4 CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 83 -------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHE 129
L L LDLS+NQ+Q +P + ++ L L +S N + +
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLG 118
Query: 130 AFINVPKL 137
A + +L
Sbjct: 119 ALRGLGEL 126
Score = 64.4 bits (157), Expect = 7e-12
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 48 ETVLCKAKNFTTIPEQLD--VGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFV 102
T+ ++P VLD+S N L R L L EL L N+++ +
Sbjct: 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 103 PSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
P +L +L +L L+ N + ++ + L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Score = 56.3 bits (136), Expect = 4e-09
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
Q L L N L L +L L+ N + +P+ +L+ + L L L N +
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Query: 126 ITHEAF--INVPKLNLED--FACSPNIRP 150
I F +P L + C+ I
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILY 215
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 71.2 bits (175), Expect = 1e-13
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 29/125 (23%)
Query: 40 ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---------------------- 77
+C E C T +P+ L VL+L+ N
Sbjct: 1 KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 78 -----LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132
L+ +KL L L+L +N++ + L EL L N IQKI + F+
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 133 NVPKL 137
L
Sbjct: 119 KQKNL 123
Score = 69.3 bits (170), Expect = 5e-13
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 69 QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
+VLDL N L +R L N+ E+ LSYN+ + + + L+ L L ++
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 125 KITH--EAFINVPKL 137
+ F + L
Sbjct: 468 NVDSSPSPFQPLRNL 482
Score = 68.5 bits (168), Expect = 9e-13
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+L+L N + F+ L L +DL N + +P+ + ++ + L+ L L N I
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 126 ITHEAFINVPK----LNLED--FACSPN 147
+ + F + L++ F C+
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Score = 68.1 bits (167), Expect = 1e-12
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
+ + ++ L L N + F K NL+ LDLS+N +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLE 140
+ L+EL LS N IQ + E +L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLK 174
Score = 66.9 bits (164), Expect = 3e-12
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFLDR-----------YTFRKLINLVELDLSYNQIQF 101
N I + + G ++LDL N L R Y + L +L L+L N
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+P + + EL+ + L N + + F N L
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Score = 66.6 bits (163), Expect = 3e-12
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 69 QVLDLSDNFLDRYT-----FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
Q L L L F+ L NL LDLS N I + +L+ + +L L L N +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 124 QKITHEAFINVPKLNLED 141
++ A P L+
Sbjct: 517 ARLWKHANPGGPIYFLKG 534
Score = 63.5 bits (155), Expect = 4e-11
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 69 QVLDLSDNFL---DRYTFR--KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ L LS++ L TF K NL LDLSYN + V + + +L L N I
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 124 QKITHEAFINVPKL-------NLEDFACSPN-IRPITPDV 155
Q + + + + + + S + I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Score = 61.6 bits (150), Expect = 1e-10
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNF-----LDRYTFRKLIN--LVELDLSYNQIQFVPSH 105
+ I + G + L LS++F L TF L + L L+L+ N+I + S
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399
Query: 106 ILDSILELRELKLSGNPI-QKITHEAFINVPKL 137
+ L L L N I Q++T + + + +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Score = 59.6 bits (145), Expect = 7e-10
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHIL---DSILELRELKLSGNP 122
+ L+LS N + F + L L L+ Q+ + L + +R L LS +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 123 IQKITHEAFINVPKLNLE 140
+ ++ F+ + NL
Sbjct: 234 LSTTSNTTFLGLKWTNLT 251
Score = 57.7 bits (140), Expect = 3e-09
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 69 QVLDLSDNF------------LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELREL 116
+ L+L +F +D ++F+ L L L++ N I + S++ ++ L+ L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 117 KLSGNPIQ--KITHEAFINVPKLNLE 140
LS + +T+E F+++ L
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLH 384
Score = 55.4 bits (134), Expect = 1e-08
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHIL 107
++ V Q L LS+N + + +L +L+LS NQI+
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 108 DSILELRELKLSGNPIQK-ITHEAFINVPKLNLE 140
+I L L L+ + +T + + + ++
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 71.4 bits (175), Expect = 1e-13
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ LDLS L+ F L +L L+L+YN+I + + L+ L LS N + +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 126 ITHEAFINVPKL 137
+ F +PK+
Sbjct: 329 LYSSNFYGLPKV 340
Score = 70.6 bits (173), Expect = 2e-13
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 69 QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+VL+L+ N + F L NL L+LSYN + + S + ++ + L N I
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 126 ITHEAFINVPKLNLEDF 142
I + F + KL D
Sbjct: 353 IQDQTFKFLEKLQTLDL 369
Score = 67.1 bits (164), Expect = 3e-12
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSH-ILDSILELRELKLSGNP 122
L L L FR L L LDLS NQI+ + H + L+ + S N
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 123 IQKITHEAFINVPKLNLEDFACSPN 147
I + + L F+ + N
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAAN 184
Score = 65.2 bits (159), Expect = 1e-11
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 35/131 (26%)
Query: 38 TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL------------------- 78
+C + N T +P+ L+ T+ L LS N++
Sbjct: 1 SCSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLEL 55
Query: 79 ---------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK--IT 127
D+ FR L NL LDL ++I F+ + L EL+L + +
Sbjct: 56 GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115
Query: 128 HEAFINVPKLN 138
F N+ L
Sbjct: 116 DGYFRNLKALT 126
Score = 65.2 bits (159), Expect = 1e-11
Identities = 37/255 (14%), Positives = 71/255 (27%), Gaps = 52/255 (20%)
Query: 69 QVLDLSDNFLDR--------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120
+ L L +N L F L +L L L++N + +P + + LR L L+
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV----TAEENENVTLSCRATGSPVP 175
N + ++H NLE S N + PDV + + + C
Sbjct: 514 NRLTVLSHNDL----PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC--ECELST 567
Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
I W+ N ++ +S S +++ +++
Sbjct: 568 FINWL-------NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV-------- 612
Query: 236 VFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNR 295
+ + VT+ L ++ Y R
Sbjct: 613 ------------------LKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654
Query: 296 RYLEDKCESNHQQSK 310
+D +
Sbjct: 655 LVFKDHPQGTEPDMY 669
Score = 64.1 bits (156), Expect = 2e-11
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDS 109
I ++ G QVL+LS N L F L + +DL N I +
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
+ +L+ L L N + I ++P + L
Sbjct: 361 LEKLQTLDLRDNALTTIHF--IPSIPDIFLSG 390
Score = 62.9 bits (153), Expect = 7e-11
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 69 QVLDLSDNFL---DRYTFRKL--INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
+ + D+ TF L ++ LDLS+ + + S + +++ +L+ L L+ N I
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 124 QKITHEAFINVPKL 137
KI EAF + L
Sbjct: 303 NKIADEAFYGLDNL 316
Score = 57.9 bits (140), Expect = 3e-09
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSIL 111
T+P ++++ ++ LS+N L+ Y ++ +L L L+ N+ S
Sbjct: 392 KLVTLP-KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 112 E-LRELKLSGNPIQ-----KITHEAFINVPKL 137
L +L L N +Q ++ + F + L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Score = 47.1 bits (112), Expect = 7e-06
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 69 QVLDLSDNFLDRY---TFRKL--INLVELDLSYNQIQFVPSHILDSILE------LRELK 117
+ +D S N + L L L+ N + S + L L
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 118 LSGNPIQKITHEAFIN-VPKLNLEDFACSPNIR 149
+SGN F N + K + +I
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Score = 44.0 bits (104), Expect = 7e-05
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
Q LDL DN L T + ++ ++ LS N++ + L + LS N ++ +
Sbjct: 365 QTLDLRDNALT--TIHFIPSIPDIFLSGNKL----VTLPKINLTANLIHLSENRLENLDI 418
Query: 129 EAFI-NVPKLNLEDFACSPN-IRPITPDVTAEENENVT 164
F+ VP +L+ + N + D T EN ++
Sbjct: 419 LYFLLRVP--HLQILILNQNRFSSCSGDQTPSENPSLE 454
Score = 41.3 bits (97), Expect = 4e-04
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
++LD+S N + N I + L + + I+
Sbjct: 207 EILDVSGNG---------WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 129 EAFINVPKLNLEDFACSPN-IRPITPDV 155
F + + ++ S + + V
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Score = 39.0 bits (91), Expect = 0.002
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPI 151
+ + VP + L LS N I+ +T +F + +L L + I
Sbjct: 9 AFYRFCNLTQVPQVLNT----TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 152 TPDV 155
+
Sbjct: 65 DKEA 68
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 65.4 bits (160), Expect = 1e-13
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D E+V L C + + P + W+ K I +++ Y + +++ L
Sbjct: 17 DQWVAPGEDVELRCELSRAGTP-VHWLKDRKAI--------RKSQK-YDVVCEGTMAMLV 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
I ++ D+G YTC +
Sbjct: 67 IRGASLKDAGEYTCEVEASKST 88
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 64.7 bits (158), Expect = 2e-13
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 14/103 (13%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ + P ++ V P ++KW + I +YI +
Sbjct: 11 AKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP---------STKYIFEHKG 60
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
L I M+D Y AG+ + L V ++
Sbjct: 61 CQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGPSS 99
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 68.9 bits (168), Expect = 2e-13
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
R + T EN T C+A G+P+P++K +
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP--------------------- 226
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L V VT G Y CRA++ GEV +++NV
Sbjct: 227 -LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 41.6 bits (97), Expect = 2e-04
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 13/117 (11%)
Query: 150 PITPDVTA----EENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P + + E + T+ C G PV + + + G +N
Sbjct: 4 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL--------ALGDQRLNPTVTYGN 55
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
S V + TC G T ++ + +
Sbjct: 56 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 112
Score = 40.4 bits (94), Expect = 5e-04
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 21/89 (23%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I E VT+ C A + + +
Sbjct: 99 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP---------------------AQP 137
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
+ + L + A + ++C A
Sbjct: 138 LGPRAQLLLKATPEDNGRSFSCSATLEVA 166
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 65.1 bits (159), Expect = 2e-13
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
++ I D+T + E C + V KW + ++ I +
Sbjct: 12 LQDIA-DLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEV---------RPSKRITISHVG 60
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
L I V D G YT A + LN ++++
Sbjct: 61 RFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIK 99
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 64.4 bits (157), Expect = 3e-13
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+P +V AE + TLSC ++ W K +++ + ++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS---------SSKVRVEA 61
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ L + +++G Y+C AG + L V
Sbjct: 62 VGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQV 96
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 64.3 bits (157), Expect = 3e-13
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D+ E TL C + P +KW + ++ +Y ++ ++ L
Sbjct: 17 DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL---------RPGDKYSLRQEGAMLELV 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
+ + DSG Y+C G+ T+ +L V + +
Sbjct: 67 VRNLRPQDSGRYSCS----FGDQTTSATLTVTALPSG 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 68.5 bits (168), Expect = 4e-13
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N + + G + + L++N L + LDL N+I V L + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 113 -LRELKLSGNPIQKITHEAFI-NVPKLNLED 141
L L L N I + + + L+L
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
Score = 64.2 bits (157), Expect = 1e-11
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
++ ++D+ L + N+ ELDLS N + + + L +L L LS N + +
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 126 ITHEAFINVPKL 137
++ L
Sbjct: 73 T--LDLESLSTL 82
Score = 62.3 bits (152), Expect = 4e-11
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+ L ++N + R + + + L+ N+I + ++ L L N I +
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 129 EAFIN 133
Sbjct: 162 AELAA 166
Score = 61.5 bits (150), Expect = 7e-11
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++L+LS N L + L L LDL+ N +Q + + L + N I +++
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115
Query: 128 HEAFINVPKLNLED 141
+ L +
Sbjct: 116 CSRGQGKKNIYLAN 129
Score = 52.7 bits (127), Expect = 6e-08
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ ++ + ++ + + S ++EL LSGNP+ +I+ KL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Score = 51.5 bits (124), Expect = 2e-07
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHI-- 106
T+ + + L+L NF+ L LDLS N++ F+
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQS 212
Query: 107 LDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ + L N + I +A L
Sbjct: 213 AAG---VTWISLRNNKLVLI-EKALRFSQNL 239
Score = 46.9 bits (112), Expect = 5e-06
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 56 NFTTIPEQLDVGT--QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSIL 111
+ + + L +N L R NL DL N S
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 112 ELRELKLSGNPIQKITHEAFINVPKLNL 139
R ++ ++K+T + L
Sbjct: 262 -QRVQTVAKQTVKKLTGQNEEECTVPTL 288
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 64.6 bits (157), Expect = 4e-13
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
++ T +T EE + +TL C + ++W+ ++ N + ++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
+ ++T+ VT+ D G+Y C + + V+ P +
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWR 115
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 68.6 bits (167), Expect = 4e-13
Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 139 LEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMN 197
LE C R + + NE C + I W +K + S +
Sbjct: 1 LEADKCKE--REEKIILVSSANEIDVRPCPLNPNEHKGTITW-YK-----DDSKTPVSTE 52
Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
+ I + L V + DSG Y C +N + + IS ++ E +
Sbjct: 53 QASRIHQ---HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA 109
Score = 67.8 bits (165), Expect = 7e-13
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR---QYIIK 204
+ P + + + L C TG W + +I L +
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 205 TINSLSNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNV 244
++ L I + +TC AKN G I L
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 62.0 bits (150), Expect = 5e-11
Identities = 19/157 (12%), Positives = 43/157 (27%), Gaps = 22/157 (14%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSC------RATGSPV 174
N + + +E+ + L C + + +
Sbjct: 83 NSSYCLRIKISAKF----VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 175 PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
PK++W K + ++ + L ++ V G YTC A
Sbjct: 139 PKLQWYKDCKPL--------LLDNIHFSGVK----DRLIVMNVAEKHRGNYTCHASYTYL 186
Query: 235 EVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIIL 271
I+ + + +P +V+ + + L
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDL 223
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 63.9 bits (156), Expect = 4e-13
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
D TA E V L C + +KW FK + K +Y I+ L
Sbjct: 16 DTTAYCGERVELECEVSE-DDANVKW-FKNGEE------IIPGPKSRYRIRVEGKKHILI 67
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
I T +D+ Y+ G
Sbjct: 68 IEGATKADAAEYSVMTTGGQSS 89
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 63.9 bits (156), Expect = 5e-13
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ + P + + L+ ++KW+ + I M+ +YI ++I
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI--------QMSGSKYIFESIG 69
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ LTI +++D Y C G + L V
Sbjct: 70 AKRTLTISQCSLADDAAYQCV----VGGEKCSTELFV 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 68.7 bits (168), Expect = 7e-13
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILD 108
IPE T + L S N L + + + + + +D SYN+I +I
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 109 SI-----LELRELKLSGNPIQKITHEAFINVPKL 137
S+ + + LS N IQK E F +
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Score = 67.2 bits (164), Expect = 3e-12
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 56 NFTTIPEQLDVGT--QVLDLSDNFLDRY---------TFRKLINLVELDLSYNQIQFVPS 104
F++ P Q + + + +L++L + N I+ V
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823
Query: 105 HILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
+ L L ++ NP I + + +
Sbjct: 824 KLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Score = 62.2 bits (151), Expect = 1e-10
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--------YTFRKLINLVELDLSYNQIQFVP 103
IP + + +D S N + K IN + LSYN+IQ P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 104 SHILDSILELRELKLSGNPIQKITHEAFINVP 135
+ + + + + LS N + I +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKD 721
Score = 61.4 bits (149), Expect = 2e-10
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
N P + +LD N + F + L +L L YNQI+ +P
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618
Query: 111 LELRELKLSGNPIQKITHEAFI-NVPKL 137
++ L S N ++ I + +V +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Score = 60.3 bits (146), Expect = 4e-10
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 56 NFTTIPE-----QLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI- 106
+ +L L L N ++ + L S+N+++++P+
Sbjct: 584 KVRHLEAFGTNVKL----TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Query: 107 LDSILELRELKLSGNPIQKITHEAFINVPKLNL 139
S+ + + S N I ++
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Score = 57.6 bits (139), Expect = 3e-09
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 15/96 (15%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL----------DRYTFRKLINLVELDLSYNQIQFV 102
P +L + LS+N + ++ L +DL +N++ +
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 103 PSHILDSILE-LRELKLSGNPIQKITHEAFINVPKL 137
+ L L + +S N +N +L
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQL 778
Score = 49.1 bits (117), Expect = 2e-06
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
L + N + + + L LD++ N + + +E L + Q I
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
Query: 129 EAFINVPK 136
+ + +
Sbjct: 869 CDALGIER 876
Score = 46.8 bits (111), Expect = 9e-06
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L+ +L L L + D L + + I+
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 126 ITHEAFINVP-KLNLEDFAC-----SPNIRPITPD 154
+ F++ +LNL D +P ++PI D
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420
Score = 46.0 bits (109), Expect = 1e-05
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVP------SHILDSILELRELK-- 117
++L + L L L+++ N+ + + D +++
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 118 -LSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
+ N +++ A + K+ L C N
Sbjct: 554 YMGYNNLEEFPASASLQ--KMVKLGLLDCVHN 583
Score = 39.5 bits (92), Expect = 0.002
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 4/130 (3%)
Query: 88 NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
+ L L+ + + + EL+ L + ++ +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH-R 382
Query: 148 IRPITPDVTAEENENVTLSC--RATGSPVPKIKWIFKEKIIANISSGLANM-NKRQYIIK 204
IR + + ++ + LS + + P++K I K+ I+ + + N+ N+ +I K
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 205 TINSLSNLTI 214
I L+ L I
Sbjct: 443 AIQRLTKLQI 452
Score = 38.3 bits (89), Expect = 0.004
Identities = 5/53 (9%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 71 LDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
+ N + ++L L + + + + + K N
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Score = 38.3 bits (89), Expect = 0.004
Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR---YTFRKLINLVELDLS-YNQIQFVPSHILDSIL 111
FT + + + ++ L +L +++L + +P + D +
Sbjct: 459 PFTYDNIAV--DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LP 515
Query: 112 ELRELKLSGNPIQKITHE 129
EL+ L ++ N
Sbjct: 516 ELQSLNIACNRGISAAQL 533
Score = 34.5 bits (79), Expect = 0.064
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 55 KNFTTIPEQLDVGTQVLDLSDNFLDRYT--------FRKLINLVELDLSYNQIQFVPSHI 106
K F ++L + DL + ++R R + ++ N+I F+ I
Sbjct: 389 KMFLDYDQRL----NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444
Query: 107 LDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
+ +L+ + + +P +
Sbjct: 445 Q-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 65.7 bits (159), Expect = 2e-12
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 146 PNIRPITPDVTAEENENVTLSC---RATGSPVPKIKWIF------KEKIIANISSGLANM 196
P + +P + E+V + C R V ++ W+F + + S L+
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 197 NKR-----QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
R + T ++ +L + V +D GIYTC + + + + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
Score = 61.8 bits (149), Expect = 5e-11
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 19/136 (13%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
D+ + + C + K+ W+F + L+ + +
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 207 NSLSN---------------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
+ + V SD GIYTC G E I L+V++ E
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Query: 252 AQPDPVYLVASLTTVV 267
P +
Sbjct: 243 TIS-PTPPTDKGQQGI 257
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 66.4 bits (161), Expect = 2e-12
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQY 201
+ P + E ++C A + + I W I + G+ ++
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288
Query: 202 IIKTINSLSNLTIVAVTMSDSG-IYTCRAKNGAGEVFTNISLNV 244
I + L VT G YTCR N + ++ +
Sbjct: 289 GITE----ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 63.3 bits (153), Expect = 2e-11
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 13/122 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P+ P T ++ + + L C I W + + ++ +Y
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IIDGTKYSQS 180
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
NL I + DSG Y C + +I ++ K+ T + D + +
Sbjct: 181 G----QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 265 TV 266
+
Sbjct: 237 KI 238
Score = 54.1 bits (129), Expect = 3e-08
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)
Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
T + A E + C + ++ K+ ++ G + + +
Sbjct: 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN-----GD 90
Query: 212 LTIVAVTMSDSG-IYTCRAKNGAGEVFTNISLNVIKV 247
L I T +DS Y C G+ I + I+
Sbjct: 91 LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 67.2 bits (164), Expect = 2e-12
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 56 NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
N + + G + + L++N L + LDL N+I V L + +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 113 -LRELKLSGNPIQKITHEAF 131
L L L N I + +
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV 189
Score = 63.7 bits (155), Expect = 2e-11
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 68 TQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
++ ++D+ L + N+ ELDLS N + + + L +L L LS N +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 125 KITHEAFINVPKL 137
+ ++ L
Sbjct: 72 ET--LDLESLSTL 82
Score = 62.6 bits (152), Expect = 7e-11
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+ L ++N + R + + + L+ N+I + ++ L L N I +
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 129 EAFIN 133
Sbjct: 162 AELAA 166
Score = 61.8 bits (150), Expect = 1e-10
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 69 QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++L+LS N L L L LDL+ N +Q + + L + N I +++
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115
Query: 128 HEAFINVPKLNLED 141
+ L +
Sbjct: 116 CSRGQGKKNIYLAN 129
Score = 60.6 bits (147), Expect = 3e-10
Identities = 24/174 (13%), Positives = 42/174 (24%), Gaps = 19/174 (10%)
Query: 56 NFTTIPEQLDVGT-QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
+ Q+ + LDLS N L F+ + + L N++ + L
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQN 238
Query: 113 LRELKLSGNPIQKITHEAFI----NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCR 168
L L GN T F V + + + C
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG-QNEEECTVPTLGHYGAYCCE 297
Query: 169 ATGSPVPKIKWIFKEK----------IIANISSGLANMNKRQYIIKTINSLSNL 212
+P K K + N +++ I +
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Score = 52.2 bits (125), Expect = 1e-07
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+ ++ + ++ + + S ++EL LSGNP+ +I+ KL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Score = 48.7 bits (116), Expect = 1e-06
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
+L + +R E+D Q + V + L+ + +
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375
Query: 127 THEAFINVPKLN 138
+L+
Sbjct: 376 VSNGRRAHAELD 387
Score = 42.9 bits (101), Expect = 1e-04
Identities = 6/63 (9%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
+ +D + + L+ + S+ + EL +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398
Query: 126 ITH 128
+ H
Sbjct: 399 LQH 401
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 66.8 bits (162), Expect = 3e-12
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 22/97 (22%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
R + T EN T C+A G+P+P++K K+
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKC-LKDGTF--------------------- 410
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L V VT G Y CRA++ GEV +++NV
Sbjct: 411 PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 48.3 bits (114), Expect = 2e-06
Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 21/99 (21%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P I E VT+ C A + + + +
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR----------------- 326
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ L + A + ++C A + +
Sbjct: 327 ----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361
Score = 44.9 bits (105), Expect = 3e-05
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 14/128 (10%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPI-TPDVTAEENENVTLSCRATGS-PVPKIK 178
++ E F N P P E + T+ C G PV + +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ 222
Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY--TCRAKNGAGEV 236
L + + +S S V+VT D G TC G
Sbjct: 223 VHLA----------LGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 272
Query: 237 FTNISLNV 244
T ++ +
Sbjct: 273 ETLQTVTI 280
Score = 44.1 bits (103), Expect = 4e-05
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 16/115 (13%)
Query: 146 PNIRPITP-DVTAEENENVTLSCRATGS---PVPKIKWIFKEKIIANISSGLANMNKRQY 201
P + P +N+TL C+ G + + EK + +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
T++ ++CR + + N P
Sbjct: 142 --------VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188
Score = 43.7 bits (102), Expect = 6e-05
Identities = 8/92 (8%), Positives = 20/92 (21%), Gaps = 16/92 (17%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
V +V ++C + + + L + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGI----------ETPLPKKE------LLLPGNNRK 50
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + C + G+ L V
Sbjct: 51 VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV 82
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 63.3 bits (154), Expect = 3e-12
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 19/96 (19%)
Query: 151 ITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
TP + +E E + L C + P+ K+ + K
Sbjct: 91 QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD----------------- 133
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
+I S SG Y C G + +++ V
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 59.8 bits (145), Expect = 5e-11
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 22/116 (18%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
++ P + + ++VTL+C+ SP I+W +I +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------- 51
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
+DSG YTC+ + + L V+ + P +
Sbjct: 52 ------PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVLFEWLVLQTPHLEFQE 99
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 64.9 bits (158), Expect = 3e-12
Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 24/125 (19%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ E E + L C A V + + K
Sbjct: 82 RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
SNLTI+ +S +G Y C IS+ V L AS+
Sbjct: 131 ------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV------KELFPAPVLNASV 178
Query: 264 TTVVT 268
T+ +
Sbjct: 179 TSPLL 183
Score = 62.2 bits (151), Expect = 3e-11
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 18/116 (15%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
+ + + V E F +P + + E VTLSC +
Sbjct: 152 GKHRYTSAGISVTV----KELFP-APVLN-ASVTSPLLEGNLVTLSCETKLLLQRPGLQL 205
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+ ++ N+ S I+ DSG+Y C A G V
Sbjct: 206 YFSF------------YMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Score = 56.1 bits (135), Expect = 3e-09
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
P V+ + E VTL C P +W F S+ +
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQW-FLNGTATQTSTP------------------S 49
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
I + +++DSG Y C+ I L + + + V+
Sbjct: 50 YRITSASVNDSGEYRCQRGLSGRS--DPIQLEIHRGWLLLQVSSRVFTE 96
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 64.0 bits (155), Expect = 3e-12
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
P A+ ++V+L+C TG P W + N +
Sbjct: 5 TTP-ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK------------VTNEG 51
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
+ S LT+ V+ + Y C A + ++ I + + L A V
Sbjct: 52 TTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111
Query: 268 T 268
Sbjct: 112 K 112
Score = 50.9 bits (121), Expect = 9e-08
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 23/134 (17%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGS---PVPKI 177
+K+ + + P I E + +T+ C +I
Sbjct: 75 CESRKLEKGIQVEIYSF--------PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ + ++ + + +T V + CRAK E+
Sbjct: 127 DLLKGDHLMKSQEFL-----EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Query: 238 -------TNISLNV 244
L V
Sbjct: 182 SVPTVRQAVKELQV 195
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 61.6 bits (150), Expect = 3e-12
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
++ EE +C+ T P + W + ++ LT
Sbjct: 17 NLQVEEKGTAVFTCK-TEHPAATVTWRKGLLEL---------RASGKHQPSQEGLTLRLT 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I A+ +DS YTC G+ + L V
Sbjct: 67 ISALEKADSDTYTCD----IGQAQSRAQLLV 93
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 61.2 bits (149), Expect = 3e-12
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ P+ D + V ++ + ++ W K + K +Y K
Sbjct: 12 VTPLE-DQQVFVGDRVEMAVEVS-EEGAQVMW-MKNGVELTREDSF----KARYRFKKDG 64
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNG 232
L V D G Y G
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGG 89
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 61.7 bits (150), Expect = 4e-12
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Query: 144 CSPNIRPITP----DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
+ + P V A E V L+C P +++W K+ +
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRW-TKDG--EEVVES------P 57
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
+++ +++ L + AV + DSG Y C + + ++ V + + P
Sbjct: 58 ALLLQKEDTVRRLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEPPVRIIYSGP 110
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 61.3 bits (149), Expect = 4e-12
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 14/91 (15%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+T +E V L+C + W + + ++K L
Sbjct: 19 SLTFTTSERVVLTCELSR-VDFPATWYKDGQKV---------EESELLVVKMDGRKHRLI 68
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + DSG + CR V + V
Sbjct: 69 LPEAKVQDSGEFECR----TEGVSAFFGVTV 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 63.5 bits (155), Expect = 5e-12
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 31/130 (23%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT------------ 82
CPS C C TV C ++ T++P + T LDL N L
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56
Query: 83 ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
F KL +L L+LS NQ+Q +P+ + D + +L+EL L+ N +Q +
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 128 HEAFINVPKL 137
F + +L
Sbjct: 117 DGVFDKLTQL 126
Score = 39.7 bits (93), Expect = 5e-04
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
+ L L+ N L F KL L +L L NQ++ VP + D + L+ + L NP
Sbjct: 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 61.0 bits (148), Expect = 5e-12
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
P+T +VT E L+CR + ++W + A + R +++
Sbjct: 11 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE 70
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
++++ V++SD G YTC + L V+
Sbjct: 71 LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVL 105
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 65.8 bits (159), Expect = 6e-12
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKR 199
P + T T + VT++C K K ++K+ +I + N R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172
Query: 200 QYII--KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
+ T L ++ I + +SD+G Y C+A + + N L V+K E + D
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 59.6 bits (143), Expect = 5e-10
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 150 PITPDVTAEENENVTLSC----RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ +VTA E + + C + + KW + S +K
Sbjct: 447 KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW--NNTGCQALPSQDEGPSKAFVNCDE 504
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNG-AGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
+ L +LT+ VT +D G Y C K G + + V + + A ++ + +
Sbjct: 505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAP 564
Query: 265 T 265
Sbjct: 565 D 565
Score = 57.7 bits (138), Expect = 2e-09
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 10/100 (10%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--------IIANISSGLANMNKRQY 201
V +V + C IK+ + ++ + + + +
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395
Query: 202 IIK--TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
+ N + + +T D+G Y C T
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV 435
Score = 50.8 bits (120), Expect = 4e-07
Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 6/93 (6%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ E CR + + K + + + +
Sbjct: 237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK------DGSF 290
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
++ I + D+G Y C A + +
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Score = 48.1 bits (113), Expect = 3e-06
Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 154 DVTAEENENVTLSCR---ATGSPVPKIKWI-----FKEKIIANISSGLANMNKRQYII-- 203
+V + E +V+++C + + + W + + +++ + +
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
N + I ++ DSG Y C + + ++SL V + + +
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGR 128
Query: 264 TTVVT 268
T +
Sbjct: 129 TVTIN 133
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 60.0 bits (146), Expect = 8e-12
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 14/98 (14%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ P+T D T + + L C + + KW + + R +
Sbjct: 11 LTPLT-DQTVNLGKEICLKCEISENI--PGKWTKNGLPVQE--------SDR-LKVVQKG 58
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ L I D G Y ++VI
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDAYNVT--LPAKVHVI 94
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 59.7 bits (145), Expect = 1e-11
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 14/92 (15%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
V K++W I+ + + Y + T + LT
Sbjct: 17 SVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISA--------SNK-YGLATEGTRHTLT 66
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ V +D G Y AG L VI
Sbjct: 67 VREVGPADQGSYAVI----AGSSKVKFDLKVI 94
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 64.5 bits (156), Expect = 1e-11
Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 19/148 (12%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCR-----------ATGSPVPKIKWIFKEKIIANISSG 192
C + E+E + C S + W + + ++
Sbjct: 6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIW-YWTRQDRDLEEP 64
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
+ I K L ++D+G YTC +N L V++ ++
Sbjct: 65 INFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN 121
Query: 253 ----QPDPVYLVASLTTVVTIILTACFV 276
P + +T +
Sbjct: 122 SPMKLPVHKLYIEYGIQRITCPNVDGYF 149
Score = 59.1 bits (142), Expect = 6e-10
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 155 VTAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSL 209
E E + + C ++ W K +I+ N + +
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRT 295
Query: 210 SNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP---VYLVASLT 264
L+I VT D Y C A++ GEV + P P V L
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV-------PAPRYTVELACGFG 347
Score = 54.5 bits (130), Expect = 2e-08
Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 24/166 (14%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCR-----ATGSPVP 175
N + V ++ +C + + E ++C S P
Sbjct: 100 NTTYCSKVAFPLEV----VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP 155
Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
I W I N + I NL+ + +S++G YTC
Sbjct: 156 TITWYMGCYKIQNFN-------------NVIPEGMNLSFLIALISNNGNYTCVVTYPENG 202
Query: 236 VFTNIS--LNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLC 279
+++ L V V + PV + V ++ C
Sbjct: 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPC 248
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 60.1 bits (146), Expect = 1e-11
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
+ E E+ + C + S W K + + + R + L
Sbjct: 17 TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--------SSR-FQATRQGRKYIL 67
Query: 213 TIVAVTMSDSGIYTCRAKNGAGE 235
+ SD+G + +
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSK 90
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 64.0 bits (155), Expect = 1e-11
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P V C +T G P +I W + N S ++
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG------ 171
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNV 244
T+ S +V + D TC+ ++ + E ++L V
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Score = 62.8 bits (152), Expect = 3e-11
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)
Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQ 200
+ +I + TL+C A +P P W +
Sbjct: 215 YPPEVSISG-YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----------- 262
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + L I V + C N G +++ V
Sbjct: 263 ----AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 56.6 bits (136), Expect = 3e-09
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 17/133 (12%)
Query: 152 TPDVTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIANISSGLANMNK------RQ 200
V ++VTL C + ++ W + +++ R
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTW-ARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 201 YIIKTINSLS----NLTIVAVTMSDSGIYTCRAKN-GAGEVFTNISLNVIKVETAVAQPD 255
+ +L + + + D G YTC G +I L V+ A+
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 256 PVYLVASLTTVVT 268
V L +
Sbjct: 126 KVQLTGEPVPMAR 138
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 59.2 bits (144), Expect = 1e-11
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+P+ V E + P +W K + +A + I
Sbjct: 9 EKPLY-GVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAA--------SPD-CEIIEDG 57
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKN 231
L + + +G + +A N
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAAN 81
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 59.7 bits (145), Expect = 2e-11
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 15/101 (14%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
A E TL C S V ++W + + R Y +K + L
Sbjct: 17 TKEASEGATATLQCEL--SKVAPVEWKKGPETL--------RDGGR-YSLKQDGTRCELQ 65
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
I ++++D+G Y+C G+ T+ +L V + +
Sbjct: 66 IHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEG 102
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 59.3 bits (144), Expect = 2e-11
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ A E L C + ++W + + + R + ++ + L
Sbjct: 28 NEEATEGATAVLRCELSKMA--PVEWWKGHETLRD--------GDR-HSLRQDGARCELQ 76
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
I + D+G Y C G+ T+ L V
Sbjct: 77 IRGLVAEDAGEYLCM----CGKERTSAMLTVR 104
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 63.2 bits (153), Expect = 2e-11
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 27/162 (16%)
Query: 97 NQIQFVPSHILDSILELRELKLS----------GNPIQKITHEAFINV---PKLNLEDFA 143
+++F+ D + L L+L P + + V P +E
Sbjct: 80 ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEG-- 137
Query: 144 CSPNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
+ + ++++ + +C A G P + W + G A + +
Sbjct: 138 ----TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR-------LKGEAEYQEIRNP 186
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
T+ +S +V + C +++LNV
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228
Score = 58.6 bits (141), Expect = 7e-10
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 22/125 (17%)
Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKW 179
+ + +NV + I + + +V L+C+A +P + W
Sbjct: 215 YHMDRFKESLTLNVQ------YEPEVTIEGFDGN-WYLQRMDVKLTCKADANPPATEYHW 267
Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
++ G+ + + + S +G Y C A N G
Sbjct: 268 -TTLN--GSLPKGV-----------EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQ 313
Query: 240 ISLNV 244
+ +N+
Sbjct: 314 VEVNI 318
Score = 57.1 bits (137), Expect = 2e-09
Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 16/144 (11%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP----VPKIKWIFKEKIIANISSGLANMNK--- 198
+ + + +V L C + ++ W K + + + N +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTW-QKSTNGSKQNVAIYNPSMGVS 73
Query: 199 -------RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG-AGEVFTNISLNVIKVETA 250
R ++ + + + + + D G+Y C G + ++L V+ T
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 251 VAQPDPVYLVASLTTVVTIILTAC 274
+ L A +++ C
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATC 157
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.0 bits (142), Expect = 3e-11
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMN-KRQYIIKTINSL 209
V+ E ++ + + G + P IKW FK K + S A + K + +
Sbjct: 21 SVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
L I V + D G Y K +++V
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 60.3 bits (146), Expect = 4e-11
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ P +E + + L C + + + K+ ++ K
Sbjct: 88 IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN----------- 136
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
S+ I T+ DSG Y CR G+ V + +++ +
Sbjct: 137 ------SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
Score = 55.6 bits (134), Expect = 2e-09
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 22/108 (20%)
Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
+ E ++VTL C+ SP +W E +I++ +S +
Sbjct: 15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS-------------------S 55
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
I A T++DSG Y C+ + + L V + P V+
Sbjct: 56 YFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPRWVFK 101
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 60.3 bits (146), Expect = 4e-11
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 150 PITPDVTAEENENVTLSCR--ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ +++ L + IKW + + T
Sbjct: 4 TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSD--KKKIAQFRKEKETFKEKDTYK 61
Query: 208 SLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
N L I + D IY + G+ ++ K++ V++P
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL-KIQERVSKP 109
Score = 56.4 bits (136), Expect = 9e-10
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 21/96 (21%)
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
R P ++ N TL+C P++ K +
Sbjct: 105 RVSKPKISWT-CINTTLTCEVMNGTDPELNLYQDGK--------------------HLKL 143
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ T S S + C A N + + ++
Sbjct: 144 SQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 60.8 bits (148), Expect = 6e-11
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 26/125 (20%)
Query: 32 FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVE 91
CEC +E K+ IP +
Sbjct: 1 MGCSSPPCECH---QEEDFRVTCKDIQRIPS----------------------LPPSTQT 35
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGN-PIQKITHEAFINVPKLNLEDFACSPNIRP 150
L L ++ +PSH ++ + + +S + +Q++ +F N+ K+ + + N+
Sbjct: 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 151 ITPDV 155
I PD
Sbjct: 96 IDPDA 100
Score = 53.1 bits (128), Expect = 3e-08
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 51 LCKAKNFTTIPEQ----LDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQ-IQFV 102
+ T+IP L T L L +N + Y F L + L+ N+ + +
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVI 195
Query: 103 PSHILDSILE-LRELKLSGNPIQKITHEAFINVPKLNLED 141
+ L +S + + + ++ +L +
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 58.8 bits (142), Expect = 1e-10
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 152 TPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
E + + L C V K+ + K +K
Sbjct: 92 ASAEVVMEGQPLFLRCHGWRNWDVYKVIY-----------------YKDGEALKYWYENH 134
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
N++I T+ DSG Y C K + + +++ V
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169
Score = 54.9 bits (132), Expect = 3e-09
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 22/108 (20%)
Query: 153 PDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
P + ENVTL+C V KW + + NS +
Sbjct: 12 PWNRIFKGENVTLTCNGNNFFEVSSTKWF-----------------HNGSLSEETNS--S 52
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
L IV DSG Y C+ + + L V + V +
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLLLQASAEVVM 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 61.0 bits (148), Expect = 1e-10
Identities = 28/176 (15%), Positives = 45/176 (25%), Gaps = 59/176 (33%)
Query: 35 CPS-TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDL-------------------- 73
C C C LC+ T IP L L
Sbjct: 2 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57
Query: 74 ----SDN-----------------------------FLDRYTFRKLINLVELDLSYNQIQ 100
S N +++ F+ L NL L +S I+
Sbjct: 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117
Query: 101 FVPSHILDSILELRELKLSGNP-IQKITHEAFINVPKLNLEDFACSPNIRPITPDV 155
+P L+ L + N I I +F+ + ++ + I+ I
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173
Score = 55.2 bits (133), Expect = 1e-08
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 7/91 (7%)
Query: 58 TTIPE----QLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSI 110
TI L + +L L+ N + F N ++ +P+ +
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
L +S I + N+ KL
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARS 232
Score = 50.2 bits (120), Expect = 4e-07
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 56 NFTTIPEQLDVGTQ--VLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
I GTQ L+LSDN L F V LD+S +I +PS+ L++
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 110 ILELRELKLSGN 121
+ +LR
Sbjct: 225 LKKLRARSTYNL 236
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 59.3 bits (143), Expect = 1e-10
Identities = 20/129 (15%), Positives = 30/129 (23%), Gaps = 9/129 (6%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK--- 204
I + P V E+ NV L + W + N
Sbjct: 4 IEAVPPQVA--EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 205 ----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
I S +L +TM D G+YT + +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 261 ASLTTVVTI 269
VT+
Sbjct: 122 VKELDSVTL 130
Score = 57.8 bits (139), Expect = 5e-10
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
+ T +E ++VTL+C + I+W+F + + + +R + + S L
Sbjct: 118 TNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSL--------QLTER---MTLSQNNSIL 165
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
I + D+G Y C N +N I L++I
Sbjct: 166 RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 58.9 bits (142), Expect = 2e-10
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN--L 212
T + +V+L C +++ I + + + ++R +++ L
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQK--VENDTSLQSERATLLEEQLPLGKALF 69
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
I +V + DSG Y C GA + +++ V
Sbjct: 70 HIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV 101
Score = 50.0 bits (119), Expect = 2e-07
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 138 NLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMN 197
L + +R T + V L+C+A G P+ ++ W S AN +
Sbjct: 96 YLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQ--------NVSVPANTS 147
Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ S L + S ++C N + T+ ++
Sbjct: 148 HIRTPEGLYQVTSVLRL---KPQPSRNFSCMFWNAHMKELTSAIIDP 191
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 61.2 bits (149), Expect = 2e-10
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDRY----------TFRKLINLVELDLSYNQIQF 101
IP D + +D S N + T K IN+ ++LS NQI
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVP 135
P + + L + L GN + +I + +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Score = 60.1 bits (146), Expect = 5e-10
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 56 NFTTIP---------EQLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVP 103
+F+ P + + Q D N R +L +L + N I+ V
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQ-RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582
Query: 104 SHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
I + + L + NP I + +
Sbjct: 583 EKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYML 618
Score = 58.9 bits (143), Expect = 1e-09
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 56 NFTTIPEQLDVGT---QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILD 108
T IP T + L + N L + + + + + +D SYN+I V D
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 109 SILE-------LRELKLSGNPIQKITHEAFINVPKLN 138
+ + + LS N I K E F L+
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Score = 58.9 bits (143), Expect = 1e-09
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDRYT-----FRKLINLVELDLSYNQIQFVPSHI 106
N T P + + +L+ N L F I L L+L+YNQI +P++
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQL---EGKLPAFGSEIKLASLNLAYNQITEIPANF 372
Query: 107 LDSILELRELKLSGNPIQKITHEAFI-NVPKLN 138
++ L + N ++ I + +V ++
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405
Score = 56.6 bits (137), Expect = 6e-09
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI-L 107
G+ L+L+ N + + L ++N+++++P+
Sbjct: 341 QLEGKLPAF--GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 108 DSILELRELKLSGNPIQKITHEAFINVPK 136
S+ + + S N I + + F +
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427
Score = 52.7 bits (127), Expect = 1e-07
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR----------YTFRKLINLVELDLSYNQIQF 101
+ P++L T ++L N L F+ L +DL +N++
Sbjct: 444 QISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 102 VPSHILDSILE-LRELKLSGNPIQKI 126
+ + L L + LS N K
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKF 528
Score = 52.0 bits (125), Expect = 2e-07
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDS 109
T + + T +DLS N + L + + + L
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD-AQGNRTLRE 557
Query: 110 ILE-------LRELKLSGNPIQKITHEAFINVPKLNLED 141
E L +L++ N I+K+ + N+ L+++D
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKD 596
Score = 48.5 bits (116), Expect = 2e-06
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 58 TTIPEQLDVGT----QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
PE + L + N + + + N+ LD+ N + + +E
Sbjct: 556 REWPEGI--TLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEA 613
Query: 114 RELKLSGNPIQKITHEAFINVPK 136
L + Q I +++ +
Sbjct: 614 GMYMLFYDKTQDIRGCDALDIKR 636
Score = 42.3 bits (100), Expect = 2e-04
Identities = 11/108 (10%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 44 KGGKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQ 98
+ + A+ + T + D +++ + + L + ++++ N+
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284
Query: 99 IQFVPSHILD-SIL-------ELRELKLSGNPIQKITHEAFI-NVPKL 137
D L +++ + + N ++ E + + KL
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ-----FVPSHI----LDSILELREL 116
L L +L L L L + + F P I D + +
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143
Query: 117 KLSGNPIQKITHEAFINVPKLNL 139
+ E F ++ K +
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCI 166
Score = 38.1 bits (89), Expect = 0.004
Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 71 LDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++ + + + R + ++ N I FV ++ + +LR+ + +P
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAEN 222
Query: 128 HEAFINVPKLNL 139
Sbjct: 223 ICEAWENENSEY 234
Score = 36.9 bits (86), Expect = 0.009
Identities = 4/70 (5%), Positives = 16/70 (22%), Gaps = 4/70 (5%)
Query: 56 NFTTIPE--QLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSIL 111
+I + ++ + + N + +L L + + +
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 112 ELRELKLSGN 121
+
Sbjct: 231 NSEYAQQYKT 240
Score = 31.9 bits (73), Expect = 0.35
Identities = 6/52 (11%), Positives = 12/52 (23%)
Query: 82 TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN 133
+ + L L + + EL L L + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 59.2 bits (143), Expect = 2e-10
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
N V L+C+A G P ++ W + + SG + K
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDH---QVLSGKTTTTNSKREEKL 173
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
N S L I + + I+ C + E L +
Sbjct: 174 FNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVI 209
Score = 45.4 bits (107), Expect = 8e-06
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 155 VTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIANISSG-------LANMNKRQYI 202
E N+T+ C+ + W ++K I G ++ +R +
Sbjct: 11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 203 IKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
+K SL N L I V + D+G+Y C G G + I++ V + Q V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILV 126
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 58.5 bits (141), Expect = 2e-10
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 155 VTAEENENVTLSCRATGSP----VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
VT E E TLSC S +I W ++K++ + SG N+ +Y +TI ++
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIW-PEYKNRTIFDIT 62
Query: 211 N---LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
N + I+A+ SD G Y C + F L + + P P + T
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 268 TIILT 272
+
Sbjct: 123 IRRII 127
Score = 40.0 bits (93), Expect = 5e-04
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 123 IQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKWIF 181
+ K +AF + + P D + + C +G P P + W+
Sbjct: 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLE 143
Query: 182 KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+ + I++ ++ + + S L M+ + + C K G V
Sbjct: 144 NGEELNAINTTVSQDPET----ELYAVSSKLD---FNMTTNHSFMCLIKYGHLRV 191
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 58.4 bits (141), Expect = 3e-10
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ P +E + + L C + + + K+ ++ K
Sbjct: 88 IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN----------- 136
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
S+ I T+ DSG Y CR G+ V + + + +
Sbjct: 137 ------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
Score = 54.1 bits (130), Expect = 8e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 22/108 (20%)
Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
E ++VTL C+ SP +W E +I++ +S +
Sbjct: 15 QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS-------------------S 55
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
I A T+ DSG Y C+ + + L V + P V+
Sbjct: 56 YFIDAATVDDSGEYRCQTQLSTLS--DPVQLEVHIGWLLLQAPRWVFK 101
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 60.9 bits (147), Expect = 3e-10
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 8/130 (6%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+V + T C A G V + + + + K +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP------LKEIKVT 216
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
+ +++ +V T D+G Y C + G +N + V V+ P L +
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV--VKEPPVPIAPPQLASVG 274
Query: 264 TTVVTIILTA 273
T + I L A
Sbjct: 275 ATYLWIQLNA 284
Score = 31.3 bits (70), Expect = 0.53
Identities = 8/97 (8%), Positives = 17/97 (17%), Gaps = 6/97 (6%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
+ + + P+ W + I + + +T
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDPTRTWNRAELA------ISTFWPNFYQVIFEVITSGHQ 147
Query: 223 GIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
G G T + V
Sbjct: 148 GYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATF 184
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 57.2 bits (138), Expect = 5e-10
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR-QYIIKTINSLSNL 212
+ NVT + P+ ++ W ++ +A + + + + +L
Sbjct: 4 QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
TI +T SD Y + N L V+++
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDT--MKFFLYVLEM 95
Score = 46.1 bits (109), Expect = 3e-06
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 20/97 (20%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
+ ++ + E N TL+C ++K ++ +
Sbjct: 93 LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE--------------------HLR 132
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
SL T+ + + C+A N + +N
Sbjct: 133 SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 57.9 bits (139), Expect = 6e-10
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 19/145 (13%)
Query: 150 PITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEK------IIANISSGLANMNKRQYI 202
+ P V ++V L C TG+ ++W ++ + + G
Sbjct: 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64
Query: 203 IK-----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDP 256
++S L + + D Y C + GA LNV A+P+
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF------AKPEA 118
Query: 257 VYLVASLTTVVTIILTACFVVLCII 281
+ + T+ + +A + C
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNS 143
Score = 40.9 bits (95), Expect = 3e-04
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL- 209
E++ +C + G+P PKI W + + ++ + L
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLL 185
Query: 210 ---SNLTIVAVTMSDSGIYTCRAKNGAGE 235
S L + + C A E
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPE 214
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 54.9 bits (132), Expect = 8e-10
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIF--KEKIIANISSGLANMNKR-QYIIKTINSL 209
+T NVTL+ + ++ W + +KI+ S + + ++
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPD 255
L I V D+ Y R G I L V+ V +P
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLD---PVPKPV 116
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 54.9 bits (132), Expect = 9e-10
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINS 208
T +++AE+ ++ L C + + V ++ W +++++A ++ L + +
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 209 LSNLTIVAVTMSDSGIYTCR-AKNGAGEVFTNISLNVI 245
LT+ ++T++D+G Y C G I L V+
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 56.5 bits (136), Expect = 9e-10
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 155 VTAEENENVTLSCR--ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN- 211
V + L+ + +++W ++A K L+N
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK----MKPFLKSGAFEILANG 61
Query: 212 -LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
L I +T DSG Y + G N +L++ +E P+ +T
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLT 116
Score = 51.5 bits (123), Expect = 4e-08
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 20/95 (21%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
++ + E N TL+C ++K ++ + SL
Sbjct: 100 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE--------------------HLRSL 139
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
T+ + + C+A N + +N
Sbjct: 140 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 56.7 bits (136), Expect = 5e-09
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 40 ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQ 98
+ + + K ++ + +VL L+ L +L+ + LDLS+N+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474
Query: 99 IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
++ +P L ++ L L+ S N ++ + V L L++ N
Sbjct: 475 LRALPPA-LAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNN 518
Score = 53.2 bits (127), Expect = 6e-08
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 58 TTIPEQLDVGT--QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPS-HILDSILEL 113
+P L +VL SDN L+ L L EL L N++Q + L S L
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 114 RELKLSGNPIQKI 126
L L GN + +
Sbjct: 536 VLLNLQGNSLCQE 548
Score = 49.0 bits (116), Expect = 1e-06
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 40 ECKWKGGKETVLCKAKNFTTIP--EQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLS 95
+ K+ T + EQL + LDLS N L L L L S
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQL-LLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494
Query: 96 YNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKL---NLED--FACSPNIR 149
N ++ V + ++ L+EL L N +Q+ + ++ P+L NL+ I+
Sbjct: 495 DNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Score = 36.3 bits (83), Expect = 0.016
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 69 QVLDLSDNFLDRYT----FRKLINLVELDLSYNQIQFVPSHILDSILELRELKL 118
Q L L +N L + LV L+L N + L +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 54.6 bits (131), Expect = 5e-09
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 151 ITP-DVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANI------SSGLANMNKRQYI 202
+TP V E+VTL V I W+F E +A I S + N +Q
Sbjct: 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGK 62
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+L + + M D+G Y + ++ +L ++
Sbjct: 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL 105
Score = 43.4 bits (102), Expect = 3e-05
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 25/140 (17%)
Query: 111 LELRELKL--SGNPIQKITHEAFINVPKLNLEDFACSPNIR-PITPDVTAEENENVTLSC 167
L+L LK+ +G+ +I+ + + L NI+ + + L+C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 168 RAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSDSGIY 225
+W T++S NLT+ +S Y
Sbjct: 132 SVEDADDNVSFRWEAL--------------------GNTLSSQPNLTVSWDPRISSEQDY 171
Query: 226 TCRAKNGAGEVFTNISLNVI 245
TC A+N + ++S +
Sbjct: 172 TCIAENAVSNLSFSVSAQKL 191
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 54.1 bits (130), Expect = 5e-09
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIF--KEKIIANISSGLANMNKRQYIIKTINS 208
P+V A NVTL+ + ++ W+ +KI+ +G + + + +
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
+N L I V+ D G Y R + + + I++ V ++
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEVYEM 105
Score = 48.0 bits (114), Expect = 8e-07
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 20/95 (21%)
Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
++ + E N TL+C ++K ++ + SL
Sbjct: 105 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL--------------------RSL 144
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
T+ + + C+A N + +N
Sbjct: 145 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 52.9 bits (126), Expect = 8e-09
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 1/111 (0%)
Query: 135 PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
K + + +P T D T V L C+ ++W + A
Sbjct: 28 DKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA 87
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ R ++ + +++I V ++D G YTC + V+
Sbjct: 88 LRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVL 137
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 55.2 bits (132), Expect = 9e-09
Identities = 15/141 (10%), Positives = 38/141 (26%), Gaps = 26/141 (18%)
Query: 146 PNIRPITPDVTAEENENVTLSC---RATGSPVPKIKWI----FKEKIIANISSGLANMNK 198
+V L + G + K + +
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV------------ 140
Query: 199 RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
I++ ++TI T +G+YT + + + + S ++ V Q
Sbjct: 141 -------IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES 193
Query: 259 LVASLTTVVTIILTACFVVLC 279
+L +++ ++
Sbjct: 194 KTVALGNEISLNYVVSEDIVG 214
Score = 54.1 bits (129), Expect = 2e-08
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 24/136 (17%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS-PVPK---IKWIFKEKIIANISSGLANMNKRQ 200
+ + + + TL+ G P+P W ++ N ++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVETAVAQPDPVYL 259
LT+ T ++G Y ++ + + E V +P +
Sbjct: 53 ----------TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF 102
Query: 260 VASLTTVVTIILTACF 275
S T V + T F
Sbjct: 103 YVSSQTDVELHATVKF 118
Score = 47.5 bits (112), Expect = 3e-06
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 150 PITPDVTAEENENVTLSCR--------ATGSPVPKIKWI-FKEKIIANISSGLANMNKRQ 200
+ T ++L+ ++G P IK+ + ++ + + +
Sbjct: 189 DVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEA 248
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG----------AGEVFTNISLNVIK 246
+I +L + T D+ + C AK A S+ V+K
Sbjct: 249 LEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 55.4 bits (133), Expect = 1e-08
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
N +++P+ L VL+++ N L + +L +L LD N++ +P + L+
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALI--SLPELPASLEYLDACDNRLSTLP----ELPASLK 123
Query: 115 ELKLSGNPIQKI 126
L + N + +
Sbjct: 124 HLDVDNNQLTML 135
Score = 53.4 bits (128), Expect = 6e-08
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
++PE + LD DN L T +L +L LD+ NQ+ +P + L
Sbjct: 91 ALISLPELPA-SLEYLDACDNRLS--TLPELPASLKHLDVDNNQLTMLP----ELPALLE 143
Query: 115 ELKLSGNPIQKI 126
+ N + +
Sbjct: 144 YINADNNQLTML 155
Score = 52.3 bits (125), Expect = 1e-07
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVE----LDLSYNQIQFVPSHILDS 109
T +PE + + LD+S N L+ + + E N+I +P +IL S
Sbjct: 171 QLTFLPELPE-SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-S 228
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIR 149
+ + L NP+ ++ + + P I
Sbjct: 229 LDPTCTIILEDNPLSSRIR---ESLSQQTAQPDYHGPRIY 265
Score = 48.4 bits (115), Expect = 2e-06
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
+T+PE + LD+ +N L +L L ++ NQ+ +P + L
Sbjct: 111 RLSTLPELPA-SLKHLDVDNNQLT--MLPELPALLEYINADNNQLTMLP----ELPTSLE 163
Query: 115 ELKLSGNPIQKI 126
L + N + +
Sbjct: 164 VLSVRNNQLTFL 175
Score = 45.0 bits (106), Expect = 3e-05
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 58 TTIPEQLDVGT---QVLDLSDNFLDRYTFR----KLINLVELDLSYNQIQFVPSHILDSI 110
+ + L + + EL L+ + +P ++
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ- 81
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
+ L+++ N + + E ++ L+ D
Sbjct: 82 --ITVLEITQNALISL-PELPASLEYLDACD 109
Score = 30.7 bits (69), Expect = 0.91
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 85 KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH---EAFI-NVPKLNLE 140
+L + YN I + + + + L G + E I +L L
Sbjct: 9 NNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67
Query: 141 D 141
Sbjct: 68 R 68
Score = 28.8 bits (64), Expect = 2.9
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 2/66 (3%)
Query: 56 NFTTIPEQLD--VGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
T IPE + T + L DN L L + +
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 114 RELKLS 119
R L +
Sbjct: 278 RPLADA 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 54.5 bits (132), Expect = 2e-08
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++L++ N + + L L L L+ NQ+ ++ + L L LS N I I
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI- 326
Query: 128 HEAFINVPKL 137
++ K+
Sbjct: 327 -RPLASLSKM 335
Score = 52.2 bits (126), Expect = 9e-08
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 69 QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
L L++N L D L NL L LS N I + L S+ ++ + I+K
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 51.0 bits (123), Expect = 3e-07
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L + +N + + L L L++ NQI + + + + +L+ L + N I I
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI- 280
Query: 128 HEAFINVPKLNLEDFACSPN 147
N+ L + N
Sbjct: 281 -SVLNNLS--QLNSLFLNNN 297
Score = 49.5 bits (119), Expect = 7e-07
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L L+++ + D L + L+L N S L ++ L L ++ + ++ +
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV- 170
Query: 128 HEAFINVPKLN 138
N+ L
Sbjct: 171 -TPIANLTDLY 180
Score = 48.7 bits (117), Expect = 1e-06
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L+L+ N + + L+ L L + N+I + + L ++ LREL L+ + I I
Sbjct: 69 EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDI- 125
Query: 128 HEAFINVPKL 137
N+ K+
Sbjct: 126 -SPLANLTKM 134
Score = 48.7 bits (117), Expect = 1e-06
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
N + T + L L + N+I + L ++ +L L++ N I I
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258
Query: 128 HEAFINVPKL 137
A ++ KL
Sbjct: 259 -NAVKDLTKL 267
Score = 48.3 bits (116), Expect = 2e-06
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L ++++ + T L +L L L+YNQI+ + L S+ L N I I
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI- 214
Query: 128 HEAFINVPKLN 138
N+ +LN
Sbjct: 215 -TPVANMTRLN 224
Score = 47.2 bits (113), Expect = 4e-06
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L + T +L ++ +L ++ ++ + ++ + L L L+GN I I
Sbjct: 25 IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI- 81
Query: 128 HEAFINVPKL 137
N+ KL
Sbjct: 82 -SPLSNLVKL 90
Score = 46.8 bits (112), Expect = 5e-06
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L + N + + + L NL EL L+ + I + L ++ ++ L L N ++
Sbjct: 91 TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN--HNLS 146
Query: 128 H-EAFINVPKL 137
N+ L
Sbjct: 147 DLSPLSNMTGL 157
Score = 40.6 bits (96), Expect = 5e-04
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 67 GTQVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
G L +++ L + L + V + + + + +L ++G +
Sbjct: 1 GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58
Query: 126 ITH-EAFINVPKLNLED 141
I E N+ LNL
Sbjct: 59 IQGIEYLTNLEYLNLNG 75
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 49.9 bits (119), Expect = 4e-08
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 153 PDVTAEENENVTLSCRATGSP-VPKIKWI--------FKEKIIANISSGLANMNKRQYII 203
+V VTL C + + W + +I + +Y +
Sbjct: 5 VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNL 64
Query: 204 KTINSLSN--LTIVAVTMSDSGIYTCRAKNG--AGEVFTNISLNVIKVETAVAQPDPV 257
K S + LTI SDSG+Y CR + + SL V +P+ V
Sbjct: 65 KGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV--------KPELV 114
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 50.3 bits (120), Expect = 4e-08
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 155 VTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ + E L C+ T SP + I+W+ + + + + L
Sbjct: 15 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLK 74
Query: 211 N---------------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ + + +SD G Y C+ K G I L V+
Sbjct: 75 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 53.5 bits (129), Expect = 5e-08
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ +P+ + + +N L+ + L L + N ++ +P D L L
Sbjct: 164 SLKKLPDLP-PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP----DLPLSLE 218
Query: 115 ELKLSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
+ N ++++ + L L N
Sbjct: 219 SIVAGNNILEELP-----ELQNLPFLTTIYADNN 247
Score = 53.1 bits (128), Expect = 7e-08
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ +P L + L +S+N L++ + L +D+ N ++ +P D L
Sbjct: 125 ALSDLPPLL----EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP----DLPPSLE 176
Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
+ N ++++ N+P L
Sbjct: 177 FIAAGNNQLEELPE--LQNLPFL 197
Score = 52.3 bits (126), Expect = 1e-07
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
+ +P+ + + + +N L+ + L L + N ++ +P D L
Sbjct: 206 SLKKLPDLP-LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP----DLPPSLE 260
Query: 115 ELKLSGNPIQKITHEAFINVPKLNLED 141
L + N + + E ++ L++ +
Sbjct: 261 ALNVRDNYLTDLP-ELPQSLTFLDVSE 286
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR-----YTFRKLI-------------NLVELDLSYN 97
+ +PE + L + N L + L NL +L + N
Sbjct: 348 HLAEVPELPQ-NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406
Query: 98 QIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
++ P D + +L+++ + A KL + F
Sbjct: 407 PLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Score = 47.7 bits (114), Expect = 3e-06
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
+ +P L L+ S N + +L EL++S N++ +P+ L
Sbjct: 291 GLSELPPNL----YYLNASSNEIRSL-CDLPPSLEELNVSNNKLIELPA----LPPRLER 341
Query: 116 LKLSGNPIQKITHEAFINVPKLNLED 141
L S N + ++ N+ +L++E
Sbjct: 342 LIASFNHLAEVPEL-PQNLKQLHVEY 366
Score = 43.8 bits (104), Expect = 6e-05
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 57 FTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELRE 115
+ + + LD L+L++ L + +L +L L S N + +P + L+
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLS--SLPELPPHLESLVASCNSLTELP----ELPQSLKS 115
Query: 116 LKLSGNPIQKIT 127
L + N ++ ++
Sbjct: 116 LLVDNNNLKALS 127
Score = 42.3 bits (100), Expect = 2e-04
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
+++PE + L S N L + L +L+ + + + +P L
Sbjct: 82 GLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133
Query: 114 RELKLSGNPIQKI 126
L +S N ++K+
Sbjct: 134 EYLGVSNNQLEKL 146
Score = 41.5 bits (98), Expect = 3e-04
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
+ +PE + L + N L F + ++ +L ++ ++ ++ +L
Sbjct: 387 HLAEVPELPQ-NLKQLHVETNPLR--EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLE 443
Query: 115 ELKLSGNPI 123
+ +
Sbjct: 444 DDVFEHHHH 452
Score = 41.5 bits (98), Expect = 3e-04
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
T+P+ + L++ DN+L +L +L LD+S N + L
Sbjct: 248 LLKTLPDLPP-SLEALNVRDNYLT--DLPELPQSLTFLDVSENIFSGLSE----LPPNLY 300
Query: 115 ELKLSGNPIQKITHE 129
L S N I+ +
Sbjct: 301 YLNASSNEIRSLCDL 315
Score = 40.0 bits (94), Expect = 0.001
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 68 TQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ + + R EL+L+ + +P + L L S N + ++
Sbjct: 52 PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELP 107
Query: 128 HE 129
Sbjct: 108 EL 109
Score = 30.7 bits (70), Expect = 0.77
Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 16/86 (18%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQ-FVPSHILD------------SILEL 113
Q + L + + E ++++ + P + +
Sbjct: 14 QEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73
Query: 114 RELKLSGNPIQKITHEAFINVPKLNL 139
EL+L+ + + ++ L
Sbjct: 74 HELELNNLGLSSLPELPP-HLESLVA 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 52.6 bits (126), Expect = 7e-08
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
L+LS L + L LDLSYN++ PS D + ++ L L GNP
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 52.6 bits (126), Expect = 7e-08
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 69 QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
Q LDLS N L + L L+LS+ ++ VP + L L LS N +
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD 287
Query: 125 KI 126
+
Sbjct: 288 RN 289
Score = 52.2 bits (125), Expect = 9e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 69 QVLDLSDNFLDRYT------FRKLINLVELDLSYNQIQFVPSHILDSILE-LRELKLSGN 121
QVL L + ++ + + L LDLS+N ++ L L LS
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Query: 122 PIQKITHEAFINVPKLNL 139
++++ + L+L
Sbjct: 264 GLKQVPKGLPAKLSVLDL 281
Score = 42.2 bits (99), Expect = 1e-04
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 57 FTTIPEQLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ----FVPSHILDS 109
+ + L G +VL ++ + R L LDLS N + +
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL-NLE 140
L+ L L ++ + L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231
Score = 41.8 bits (98), Expect = 2e-04
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFR-KLINLVELDLSYNQI 99
+P+ L VLDLS N LDR +L + L L N
Sbjct: 264 GLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
Score = 39.5 bits (92), Expect = 0.001
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 69 QVLDLSDN-------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
+L+L + +L L L ++ + L L LS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 122 PIQKITH 128
P
Sbjct: 184 PELGERG 190
Score = 38.0 bits (88), Expect = 0.004
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 14/85 (16%)
Query: 69 QVLDLSDNFLDRYT-------FRKLINLVELDLSYNQIQFVPSHILDSILE---LRELKL 118
LDLSDN K L L L ++ L+ L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 119 SGNPIQKITHEAFINVPK----LNL 139
S N ++ + P LNL
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNL 260
Score = 33.7 bits (77), Expect = 0.080
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 69 QVLDLSDNFLDRYTF-----RKLINLVELDLSYNQIQFVPSHILD----SILELRELKLS 119
Q L L + + +L L+L + + + L+ L ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 120 GNPIQKITHEAFINVPKL 137
+ E P L
Sbjct: 158 QAHSLNFSCEQVRVFPAL 175
Score = 30.3 bits (68), Expect = 0.86
Identities = 23/124 (18%), Positives = 35/124 (28%), Gaps = 16/124 (12%)
Query: 32 FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVG----TQVLDLSDNFLDRYTFR--- 84
+C C + K +L G +L D D F
Sbjct: 6 CELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII 65
Query: 85 KLINLVELDLSYNQIQFVPSHILDSILE------LRELKLSGNPIQKITHEAFINVPKLN 138
K ++L L + +I PS IL L L+EL L + + +
Sbjct: 66 KSLSLKRLTVRAARI---PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122
Query: 139 LEDF 142
L
Sbjct: 123 LNIL 126
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 51.6 bits (123), Expect = 8e-08
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
P V C +TG P +I W + S ++
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLS------G 170
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGA--GEVFTNISLNV 244
T+ S +V + D TC+ ++ + +SL V
Sbjct: 171 TVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
Score = 46.2 bits (109), Expect = 5e-06
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 15/132 (11%)
Query: 152 TPDVTAEENENVTLSCRATGSPVP-----KIKWIFKEK----IIANISSGLANMNKRQY- 201
V ++VTL C + ++ W + + + + G + ++
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 202 ----IIKTINSLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISLNVIKVETAVAQPDP 256
+ ++L + + + D G YTC G +I L V+ A+
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK 125
Query: 257 VYLVASLTTVVT 268
V L +
Sbjct: 126 VQLTGEPVPMAR 137
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 52.4 bits (126), Expect = 1e-07
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
L+ N + + + I L LD S N++ + + + +L S NP+ ++
Sbjct: 194 NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV 250
Query: 129 EAFINVPKLNLED 141
+ L+
Sbjct: 251 STLSKLTTLHCIQ 263
Score = 51.2 bits (123), Expect = 3e-07
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LD S N L L L D S N + + L L L + +I
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEIDL 271
Query: 129 EAFINVPKLNLED 141
+ E
Sbjct: 272 THNTQLIYFQAEG 284
Score = 48.5 bits (116), Expect = 2e-06
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
L + N + + NL L N++ + + + +L L N + K+
Sbjct: 67 TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDV 123
Query: 129 EAFINVPKLNLED 141
+ LN
Sbjct: 124 SQNPLLTYLNCAR 136
Score = 48.5 bits (116), Expect = 2e-06
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
L N L L L L+ N++ + L L + N + +I
Sbjct: 88 TYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL---LTYLNCARNTLTEIDV 144
Query: 129 EAFINVPKLNL 139
+ +L+
Sbjct: 145 SHNTQLTELDC 155
Score = 47.4 bits (113), Expect = 4e-06
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+LD + + LV L L+ ++ + + +L+ L IQ +
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS- 355
Query: 129 EAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLS 166
+ +P LN +F + + + + +S
Sbjct: 356 -SVGKIPALN-NNFEAEGQTITMPKETLTNNSLTIAVS 391
Score = 47.0 bits (112), Expect = 5e-06
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
LD S N + + L L+ N I + L+ ++L L S N + +I
Sbjct: 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDV 229
Query: 129 EAFINVPKLNLED 141
+ +
Sbjct: 230 TPLTQLTYFDCSV 242
Score = 44.3 bits (105), Expect = 4e-05
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
T + + L+ + N L L ELD N+ + +L
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTT 174
Query: 116 LKLSGNPIQKITHEAFINVPKLNLED 141
L S N I ++ + +LN +
Sbjct: 175 LDCSFNKITELDVSQNKLLNRLNCDT 200
Score = 43.5 bits (103), Expect = 8e-05
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 71 LDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA 130
D + +L L LD + I + ++ + L +L + N I +
Sbjct: 26 AAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQ 83
Query: 131 FINVPKLNLED 141
N+ L +
Sbjct: 84 NTNLTYLACDS 94
Score = 40.8 bits (96), Expect = 5e-04
Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 4/72 (5%)
Query: 71 LDLSD-NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHE 129
+ L LD I + L +L L L+ + ++
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVS 336
Query: 130 AFINVPKLNLED 141
+ L+ +
Sbjct: 337 HNTKLKSLSCVN 348
Score = 35.0 bits (81), Expect = 0.037
Identities = 10/87 (11%), Positives = 21/87 (24%), Gaps = 4/87 (4%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSY-NQIQFVPSHILDSILELR 114
T + L L L+ +I+ + + +L
Sbjct: 244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD---VTHNTQLY 300
Query: 115 ELKLSGNPIQKITHEAFINVPKLNLED 141
L I ++ + L L +
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYLNN 327
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 52.6 bits (126), Expect = 1e-07
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 58 TTIPE---QLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHI--LDSIL 111
T++P +L + L +S N L + L L+ L + NQ+ +P + L S
Sbjct: 234 TSLPVLPSEL----KELMVSGNRLT--SLPMLPSGLLSLSVYRNQLTRLPESLIHLSS-- 285
Query: 112 ELRELKLSGNPIQKITHEAFINVPKLNLED 141
+ L GNP+ + T +A +
Sbjct: 286 -ETTVNLEGNPLSERTLQALREITSAPGYS 314
Score = 50.7 bits (121), Expect = 5e-07
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 58 TTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELREL 116
TT+P+ L L + DN L + L L L++S NQ+ +P +LEL
Sbjct: 53 TTLPDCLPAHITTLVIPDNNLT--SLPALPPELRTLEVSGNQLTSLPVLP-PGLLELSIF 109
Query: 117 KLSGNPIQKI 126
+ +
Sbjct: 110 SNPLTHLPAL 119
Score = 48.0 bits (114), Expect = 4e-06
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 41 CKWK--GGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQ 98
W+ E +A + L+ G VL++ ++ L ++ L + N
Sbjct: 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNN 72
Query: 99 IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
+ +P ELR L++SGN + + + +L++
Sbjct: 73 LTSLP----ALPPELRTLEVSGNQLTSLPVL-PPGLLELSIFS 110
Score = 46.4 bits (110), Expect = 1e-05
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
+ +P L L + N L L EL +S NQ+ +P EL +
Sbjct: 115 HLPALPSGL----CKLWIFGNQLTSLP-VLPPGLQELSVSDNQLASLP----ALPSELCK 165
Query: 116 LKLSGNPIQKI 126
L N + +
Sbjct: 166 LWAYNNQLTSL 176
Score = 46.0 bits (109), Expect = 1e-05
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--LD--- 108
N T++P + L++S N L L+ L + +PS + L
Sbjct: 72 NLTSLPALPP-ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130
Query: 109 --------SILELRELKLSGNPIQKITHEAFINVPKLNLED 141
L+EL +S N + + + KL +
Sbjct: 131 NQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYN 170
Score = 45.7 bits (108), Expect = 2e-05
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 56 NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
++P L +N L + L L EL +S NQ+ +P EL
Sbjct: 152 QLASLPALPS-ELCKLWAYNNQLT--SLPMLPSGLQELSVSDNQLASLP----TLPSELY 204
Query: 115 ELKLSGNPIQKI 126
+L N + +
Sbjct: 205 KLWAYNNRLTSL 216
Score = 43.0 bits (101), Expect = 1e-04
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 56 NFTTIPE---QLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSIL 111
++P +L L +N L + L L EL +S N++ +P
Sbjct: 192 QLASLPTLPSEL----YKLWAYNNRLT--SLPALPSGLKELIVSGNRLTSLP----VLPS 241
Query: 112 ELRELKLSGNPIQKI 126
EL+EL +SGN + +
Sbjct: 242 ELKELMVSGNRLTSL 256
Score = 29.9 bits (67), Expect = 1.8
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 56 NFTTIPEQLD--VGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
T +PE L ++L N L T + L + I + E
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
Query: 114 RELKLSGNP 122
R L L+
Sbjct: 332 RALHLAAAD 340
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 49.4 bits (118), Expect = 1e-07
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 27/90 (30%)
Query: 35 CPSTCECKWKGGKETVLCKAKNFT--TIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVEL 92
CP+ C C V C + T ++P V T L L+
Sbjct: 2 CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTG----------------- 40
Query: 93 DLSYNQIQFVPSHILDSILELRELKLSGNP 122
N + +P +LD++ LR L NP
Sbjct: 41 ----NNLTALPPGLLDALPALRTAHLGANP 66
Score = 27.8 bits (62), Expect = 3.3
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+P+ EL L+GN + + +P L
Sbjct: 25 LPTAFPVD---TTELVLTGNNLTALPPGLLDALPAL 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 51.6 bits (124), Expect = 1e-07
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 49 TVLCKAKNFTTIPE----QLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQF 101
++ ++P+ +L L+L+ N L F KL NL ELDLSYNQ+Q
Sbjct: 113 ELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
+P + D + +L++L+L N ++ + F + L
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 49.6 bits (119), Expect = 5e-07
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 48 ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHI 106
ET+ P+ T +L + T +L ++ ++ + + I+ V
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-- 58
Query: 107 LDSILELRELKLSGNPIQKI 126
+ + +R L L GN + I
Sbjct: 59 IQYLPNVRYLALGGNKLHDI 78
Score = 49.2 bits (118), Expect = 6e-07
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 66 VGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
L L+ N L F KL NL EL L NQ+Q +P + D + L L L+ N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 123 IQKITHEAF---INVPKLNLED 141
+Q + F N+ +L+L
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSY 166
Score = 47.7 bits (114), Expect = 2e-06
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 48 ETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSH 105
+ ++ + ++ Q + L L N L ++L NL L L+ NQ+Q +P+
Sbjct: 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNG 103
Query: 106 ILDSILELRELKLSGNPIQKITHEAF---INVPKLNLED 141
+ D + L+EL L N +Q + F N+ LNL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Score = 39.6 bits (93), Expect = 8e-04
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 69 QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
LDLS N L F KL L +L L NQ++ VP + D + L+ + L NP
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 49.8 bits (120), Expect = 1e-07
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDS 109
T + VG L L +L +L Y ++ + + +
Sbjct: 84 ELTRLKA--AVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAV-GE 140
Query: 110 ILELRELKLSGNPIQKI 126
+ + + + + +
Sbjct: 141 LPDQSKQQQIYQELTDL 157
Score = 48.6 bits (117), Expect = 4e-07
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--L 107
T + + G L L R +L +L Y ++ + + + L
Sbjct: 38 ELTRLKAAV--GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL 95
Query: 108 DSILELRELKLSGNPIQKITHE 129
+L+ + ++
Sbjct: 96 PE---KSKLQEIYQELTELKAA 114
Score = 46.7 bits (112), Expect = 1e-06
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGNPIQ 124
L L R +L +L Y ++ + + + L +L+ +
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE---KSKLQEIYQELT 63
Query: 125 KI 126
++
Sbjct: 64 RL 65
Score = 45.1 bits (108), Expect = 5e-06
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDS 109
T + + G L L R +L +L Y ++ + + +
Sbjct: 61 ELTRLKAAV--GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAV-GE 117
Query: 110 ILELRELKLSGNPIQKI 126
+ E +L+ + ++
Sbjct: 118 LPEKSKLQEIYQELTQL 134
Score = 40.5 bits (96), Expect = 2e-04
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 85 KLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGNPIQKI 126
+L +L Y ++ + + + L +L+ + ++
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPE---KSKLQEIYQELTRL 42
Score = 38.6 bits (91), Expect = 0.001
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI 106
T + VG L L + +L + + Y ++ + +
Sbjct: 107 ELTELKA--AVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAF 161
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 48.8 bits (116), Expect = 1e-07
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 153 PDVTAEENENVTLSCRATGS----PVPKIKW-----IFKEKIIANISSGLANMNKRQYII 203
P++ E + L C S + + W + +++ +
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+ + L I V D+ IY CR + V
Sbjct: 75 FLHDHQAELHIRDVRGHDASIYVCRVEVLGLGV 107
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 48.3 bits (115), Expect = 2e-07
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 153 PDVTAEENENVTLSCRATGSP-----VPKIKWIFKEK----IIANISSGLANMNKRQY-- 201
V ++VTL C V ++ W + + + + G + ++
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 202 -IIKTINSLSN--LTIVAVTMSDSGIYTCR-AKNGAGEVFTNISLNVIKVETAVAQP 254
+ L N L + + + D G YTC G +I L V+ A+P
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL------AKP 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 51.1 bits (123), Expect = 2e-07
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 10/98 (10%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L N + + L L L N++ V S L ++ + L N I +
Sbjct: 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL- 368
Query: 128 HEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTL 165
N+ + + T + NV++
Sbjct: 369 -TPLANLT--RITQLGLNDQ--AWT-NAPVNYKANVSI 400
Score = 51.1 bits (123), Expect = 2e-07
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
Q L + D L L LD+S N++ + L + L L + N I I
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-- 214
Query: 129 EAFINVPKLN 138
+ L+
Sbjct: 215 TPLGILTNLD 224
Score = 50.7 bits (122), Expect = 3e-07
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L+ N L T L NL +LDL+ NQI + L + +L ELKL N I I
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI- 280
Query: 128 HEAFINVPKLN 138
+ L
Sbjct: 281 -SPLAGLTALT 290
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ +++N + T L NL L L NQI + L ++ L L+LS N I I
Sbjct: 93 VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 149
Query: 128 HEAFINVPKLNLEDFACSPNIRPITP 153
A + L F + + P
Sbjct: 150 -SALSGLTSLQQLSFGN--QVTDLKP 172
Score = 48.4 bits (116), Expect = 2e-06
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++ S+N L T + L LV++ ++ NQI + L ++ L L L N I I
Sbjct: 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128
Query: 128 H-EAFINVPKLNLED 141
+ N+ +L L
Sbjct: 129 PLKNLTNLNRLELSS 143
Score = 47.3 bits (113), Expect = 4e-06
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L N + + L L L+L+ NQ++ + + ++ L L L N I I
Sbjct: 268 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI- 324
Query: 128 HEAFINVPKL 137
++ KL
Sbjct: 325 -SPVSSLTKL 333
Score = 46.9 bits (112), Expect = 6e-06
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 56 NFTTIPEQLDVGT-QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILEL 113
N T Q D+ L + L NL +++ S NQ+ + L ++ +L
Sbjct: 35 NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKL 92
Query: 114 RELKLSGNPIQKITH-EAFINVPKLNLED 141
++ ++ N I IT N+ L L +
Sbjct: 93 VDILMNNNQIADITPLANLTNLTGLTLFN 121
Score = 46.5 bits (111), Expect = 9e-06
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L ++N + T L NL EL L+ NQ++ + + L S+ L +L L+ N I +
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL- 258
Query: 128 HEAFINVPKL 137
+ KL
Sbjct: 259 -APLSGLTKL 267
Score = 43.0 bits (102), Expect = 1e-04
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L +N + D + L NL L+LS N I + + L + L++L
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP 172
Query: 128 HEAFINVPKLNLED 141
+ +L++
Sbjct: 173 LANLTTLERLDISS 186
Score = 38.8 bits (91), Expect = 0.002
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELK-LSGNPIQKI 126
L N + T L + +L L+ P + ++ +K ++G I
Sbjct: 356 NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415
Query: 127 THEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLS 166
T + + ++ + N+ T +V+ ++ VT+
Sbjct: 416 TISDGGSYTEPDI-----TWNLPSYTNEVSYTFSQPVTIG 450
Score = 38.8 bits (91), Expect = 0.003
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 73 LSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EA 130
D +++ L ++ L + S + ++ L+ I+ I E
Sbjct: 9 TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEY 66
Query: 131 FINVPKLNLED 141
N+ ++N +
Sbjct: 67 LNNLTQINFSN 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 48.9 bits (117), Expect = 2e-07
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L + L KL L +L+LS N++ + + L L LSGN I+ ++
Sbjct: 45 EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104
Query: 128 H-EAFINVPKL 137
E + L
Sbjct: 105 TIEPLKKLENL 115
Score = 42.4 bits (100), Expect = 4e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 69 QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
+ L+LSDN + K NL L+LS N+I+ + + L + L+ L L +
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 125 KITH 128
+
Sbjct: 127 NLND 130
Score = 32.3 bits (74), Expect = 0.091
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 84 RKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQKITH-EAFINVPKLNLED 141
R ++ EL L ++ + D EL L + I + + KL L D
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 50.7 bits (122), Expect = 2e-07
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 55 KNFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI-- 106
+ + L+ T L+L L + +L +L + + + +P +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125
Query: 107 LDSILELRELKLSGNPIQKI 126
L L L+ NP++ +
Sbjct: 126 FAG---LETLTLARNPLRAL 142
Score = 43.8 bits (104), Expect = 5e-05
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 56 NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--L 107
P+Q Q + + L T ++ L L L+ N ++ +P+ I L
Sbjct: 92 PLPQFPDQA--FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149
Query: 108 DSILELRELKLSGNP 122
+ LREL + P
Sbjct: 150 NR---LRELSIRACP 161
Score = 43.0 bits (102), Expect = 8e-05
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 23/89 (25%)
Query: 56 NFTTIPEQLDVGT----QVLDLSD------------NFLDRYTFRKLINLVELDLSYNQI 99
+P + + + L + + + L+NL L L + I
Sbjct: 138 PLRALPASI--ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
Query: 100 QFVPSHI--LDSILELRELKLSGNPIQKI 126
+ +P+ I L + L+ LK+ +P+ +
Sbjct: 196 RSLPASIANLQN---LKSLKIRNSPLSAL 221
Score = 42.6 bits (101), Expect = 1e-04
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 69 QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGN 121
Q L L + + L NL L + + + + I L L EL L G
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEELDLRGC 239
Score = 33.4 bits (77), Expect = 0.092
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 51 LCKAKNFTTIPEQLDVGT----QVLDLSD-NFLDR--YTFRKLINLVELDLSYN-QIQFV 102
L P G + L L D + L +L L +LDL + +
Sbjct: 236 LRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 103 PSHI--LDSILELRELKLSGN 121
PS I L + + + +
Sbjct: 294 PSLIAQLPA---NCIILVPPH 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 48/273 (17%), Positives = 80/273 (29%), Gaps = 88/273 (32%)
Query: 60 IPEQL-DVGTQVLDLSDNFLDRYTFR--------KLINLVELDLSYNQIQFVPSHI---- 106
+P + +Q L + F + EL + + +V S +
Sbjct: 22 VPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVEPSK 76
Query: 107 ---LDSILE--LRELK---LSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAE 158
D +L L E + L GN I H A A T T E
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDI----H-ALA----------AKLLQENDTTLVKTKE 121
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM--------NKRQY--------- 201
+N + P K + + G A + N Y
Sbjct: 122 LIKNYITARIMAKRPFDKKS---NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 202 ---------IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK-VETAV 251
I + +LS L + T+ ++T G LN+++ +E
Sbjct: 179 TYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFT----QG---------LNILEWLENPS 223
Query: 252 AQPDPVYLVASLTTVVTIILT--ACFVVLCIIL 282
PD YL++ + I + A +VV +L
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Score = 43.9 bits (103), Expect = 7e-05
Identities = 67/380 (17%), Positives = 116/380 (30%), Gaps = 158/380 (41%)
Query: 79 DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK-L 137
D Y F +L +L + +Y + D I E L + + + T +A + L
Sbjct: 167 DDY-FEELRDLYQ---TY------HVLVGDLIKFSAET-L--SELIRTTLDAEKVFTQGL 213
Query: 138 NLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISSGLAN 195
N+ ++ +P+ P +++ LS P+ P I G+
Sbjct: 214 NILEWLENPSNTP---------DKDYLLSI-----PISCPLI--------------GVIQ 245
Query: 196 MNKRQYII--KTI--------NSLSNLTI--------VAVTMSDSG--IYT--------- 226
+ Y++ K + + L T VA+ +DS +
Sbjct: 246 LA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 227 ----CRAKNGAGEVFTNISLNVIKVETAVA----QPDPVYLVASLTT------------- 265
R E + N SL +E ++ P P+ +++LT
Sbjct: 304 FFIGVRCY----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 266 -----VVTIILT---ACFVV---------LCIILLKAKRKRYADVNRRYLEDKCESNHQQ 308
V I L VV L + L KA K S Q
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA---------------KAPSGLDQ 404
Query: 309 SK-PLTVNKMDRPPPV-----PSAVP--------AVPLVPPHPPPRN-EYSS----VPLS 349
S+ P + +R P A P A L+ N +++ +P+
Sbjct: 405 SRIPFS----ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 350 DTTRGPEPRDKIDHEENIDK 369
DT G + R +I +
Sbjct: 461 DTFDGSDLR---VLSGSISE 477
Score = 32.7 bits (74), Expect = 0.26
Identities = 41/302 (13%), Positives = 82/302 (27%), Gaps = 95/302 (31%)
Query: 78 LDRYTFRKLINLVELDLSYNQIQF---VPSHILDSILELRE--LKLSGNPIQKITHEAFI 132
+D Y+ R L LS+ ++ VP+ +L+E K+ P + +
Sbjct: 1 MDAYSTRPLT------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--- 51
Query: 133 NVPKLNLE------DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKII 186
+ P E + + P + ++ + L F+ +
Sbjct: 52 DEPTTPAELVGKFLGYV----SSLVEPSKVGQFDQVLNLCLTE-----------FENCYL 96
Query: 187 A--NISSGLANMN--------KRQYIIKT-INSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
+I + A + K + +IK I + S+S ++ G +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA-VGEGNAQ 155
Query: 236 VFT------NISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKR 289
+ N F L R
Sbjct: 156 LVAIFGGQGNTD-------------------------------DYFEEL--------RDL 176
Query: 290 YADVNRRYLEDKCESNHQQSKPLTVNKMDRPPPVPSAVPAVP-LVPPHPPPRNEY-SSVP 347
Y + D + + + L +D + + L P P +Y S+P
Sbjct: 177 Y-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 348 LS 349
+S
Sbjct: 236 IS 237
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 49.5 bits (117), Expect = 3e-07
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 136 KLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN 195
K + D TP + V L+C P +I W +K I
Sbjct: 104 KKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNI--------G 153
Query: 196 MNKRQYIIKTINSLSNLTIVAVT-MSDSGIYTCRAKNGAGE 235
++ I + +L++ + + SG Y C + E
Sbjct: 154 GDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPE 192
Score = 42.6 bits (99), Expect = 6e-05
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 19/79 (24%)
Query: 157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+E+ +V L+C + I W K+I ++ + +
Sbjct: 15 YQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE----------------DKKKWNLGS 55
Query: 217 VTMSDSGIYTCRAKNGAGE 235
G+Y C+ +
Sbjct: 56 NAKDPRGMYQCKGSQNKSK 74
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 49.1 bits (116), Expect = 4e-07
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 15/98 (15%)
Query: 148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
+ P P V + L+CR + ++W + + + S
Sbjct: 10 VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR----------- 58
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
S LT+ ++S +G C G + L V
Sbjct: 59 ---SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 46.9 bits (111), Expect = 6e-07
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKW--------IFKEKIIANISSGLANMNKRQY 201
V VTL C + + + W +I + + +Y
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 202 IIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+K S N LTI + D G Y C + F + L V
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 47.8 bits (114), Expect = 6e-07
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L L + L + KL L +L+LS N+I + + + L L LSGN ++ I+
Sbjct: 52 EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111
Query: 128 H-EAFINVPKL 137
E + L
Sbjct: 112 TLEPLKKLECL 122
Score = 44.0 bits (104), Expect = 1e-05
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 69 QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
+ L+LS+N + KL NL L+LS N+++ + + L + L+ L L +
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Query: 125 KITH---EAFINVPKLNLEDF 142
+ F +P+L D
Sbjct: 134 NLNDYRESVFKLLPQLTYLDG 154
Score = 30.5 bits (69), Expect = 0.47
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 66 VGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSGNPIQ 124
G+ +D+ R + EL L + + + L L L +
Sbjct: 3 SGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI 62
Query: 125 KITH-EAFINVPKLNLED 141
+++ + KL L +
Sbjct: 63 SVSNLPKLPKLKKLELSE 80
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 49.3 bits (118), Expect = 6e-07
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
Q + ++ + + NL EL LS+NQI + L + +L EL ++ N ++ +
Sbjct: 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN 101
Query: 128 HEAFINVPKLNLED 141
+ +L L++
Sbjct: 102 GIPSACLSRLFLDN 115
Score = 46.2 bits (110), Expect = 7e-06
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
++L + +N L L L LDL N+I L + ++ + L+G
Sbjct: 131 EILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188
Query: 128 HEAFINVPKLNLEDFACSPNIRPITPD 154
+ + N P+ R I+P
Sbjct: 189 VKYQPELYITNTVK---DPDGRWISPY 212
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
+ L ++ N L L L L N+++ S L + L L + N ++ I
Sbjct: 88 EELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM 145
Query: 129 -EAFINVPKLNLED 141
+ L+L
Sbjct: 146 LGFLSKLEVLDLHG 159
Score = 45.0 bits (107), Expect = 1e-05
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 69 QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+L + + ++L + + + IQ + + L+EL LS N I ++
Sbjct: 22 VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLS 79
Query: 128 H-EAFINVPKLNLED 141
+ + +L++
Sbjct: 80 PLKDLTKLEELSVNR 94
Score = 40.4 bits (95), Expect = 5e-04
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 85 KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKLNL 139
L N V+ +L + + S + ++ + IQ + + F N+ +L+L
Sbjct: 17 GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70
Score = 37.3 bits (87), Expect = 0.004
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK-LSGNPIQKI 126
+VLDL N + + +L + +DL+ + P + +K G I
Sbjct: 153 EVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212
Query: 127 T 127
Sbjct: 213 Y 213
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 49.3 bits (118), Expect = 7e-07
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L DN + L L L LS N I + + L + L L+L
Sbjct: 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216
Query: 128 HEAFINVPKLN 138
N+ N
Sbjct: 217 INHQSNLVVPN 227
Score = 48.1 bits (115), Expect = 2e-06
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L+ N L L NL L L N+++ + S L + +L+ L L N I I
Sbjct: 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI- 127
Query: 128 HEAFINVPKLN 138
+++P+L
Sbjct: 128 -NGLVHLPQLE 137
Score = 45.4 bits (108), Expect = 1e-05
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ +++ + + L N+ +L L+ N++ + L ++ L L L N ++ +
Sbjct: 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL- 105
Query: 128 HEAFINVPKL 137
+ ++ KL
Sbjct: 106 -SSLKDLKKL 114
Score = 43.9 bits (104), Expect = 4e-05
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L L N + L L L L N+I + L + +L L L N I I
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI- 171
Query: 128 HEAFINVPKLN 138
+ KL
Sbjct: 172 -VPLAGLTKLQ 181
Score = 43.5 bits (103), Expect = 6e-05
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+L + D T +L ++ ++ + + I+ V + + + +L L+GN + I
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84
Query: 128 H-EAFINVPKLNL 139
N+ L L
Sbjct: 85 PLANLKNLGWLFL 97
Score = 42.0 bits (99), Expect = 1e-04
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN---PIQ 124
Q L LS N + L NL L+L + P + +++ +K + +
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240
Query: 125 KITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLS 166
I+ + P + ++ T +V+ + VT+
Sbjct: 241 IISDDGDYEKPNVKW-------HLPEFTNEVSFIFYQPVTIG 275
Score = 38.1 bits (89), Expect = 0.003
Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 85 KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKLNLED 141
++ +L + + + + + ++ + + I+ + + NV KL L
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 46.5 bits (110), Expect = 8e-07
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 155 VTAEENENVTLSCRATGSP---VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS- 210
E +N L C T + + W + ++ L ++R + +
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 211 ---------NLTIVAVTMSDSGIYTCRAKNG--AGEVFTNISLNV 244
+L I VT+ D G Y CR + + + L++
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 47.3 bits (113), Expect = 1e-06
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+D SDN + + F L L L ++ N+I + + ++ +L EL L+ N + ++
Sbjct: 45 DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104
Query: 128 H-EAFINVPKL 137
+ ++ L
Sbjct: 105 DLDPLASLKSL 115
Score = 42.7 bits (101), Expect = 4e-05
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 69 QVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
+ L +++N + + L +L EL L+ N + + L S+ L L + NP+
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 125 KITH---EAFINVPKLNLEDFACSPNIRPITPD--VTAEE 159
H VP++ + DF + + AE+
Sbjct: 127 NKKHYRLYVIYKVPQVRVLDF------QKVKLKERQEAEK 160
Score = 42.0 bits (99), Expect = 8e-05
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 70 VLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
++ L+ + + + ELDL +I + ++ ++ + + S N I+K+
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG 59
Query: 129 -EAFINVPKLNLED 141
+ L + +
Sbjct: 60 FPLLRRLKTLLVNN 73
Score = 39.6 bits (93), Expect = 5e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 69 QVLDLSDNFLDRYT--FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
+ LDL + L +D S N+I+ + + L+ L ++ N I +I
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRI 79
Query: 127 THEAFINVPKLN 138
+P L
Sbjct: 80 GEGLDQALPDLT 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 49.3 bits (117), Expect = 1e-06
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L DN + L L L LS N I + + L + L L+L
Sbjct: 156 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213
Query: 128 HEAFINVPKLN-LEDFACSPNIRPITPDVTAEENENVT 164
N+ N +++ S I D E NV
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251
Score = 49.3 bits (117), Expect = 1e-06
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L L+ N L L NL L L N+I+ + S L + +L+ L L N I I
Sbjct: 68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN 125
Query: 128 H-EAFINVPKLNLED 141
+ L L +
Sbjct: 126 GLVHLPQLESLYLGN 140
Score = 46.6 bits (110), Expect = 1e-05
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L L +N + T +L L L L NQI + L + +L+ L LS N I +
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190
Query: 128 HEAFINVPKLN 138
A + L+
Sbjct: 191 -RALAGLKNLD 200
Score = 46.3 bits (109), Expect = 1e-05
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ +++ + + L N+ +L L+ N++ + L ++ L L L N I+ ++
Sbjct: 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS 103
Query: 128 H-EAFINVPKLNLED 141
+ + L+LE
Sbjct: 104 SLKDLKKLKSLSLEH 118
Score = 43.9 bits (103), Expect = 6e-05
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L L N + L L L L N+I + L + +L L L N I I
Sbjct: 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI- 168
Query: 128 HEAFINVPKLN 138
+ KL
Sbjct: 169 -VPLAGLTKLQ 178
Score = 43.6 bits (102), Expect = 8e-05
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+L + D T +L ++ ++ + + I+ V + + + +L L+GN + I
Sbjct: 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 81
Query: 128 H-EAFINVPKLNL 139
N+ L L
Sbjct: 82 PLTNLKNLGWLFL 94
Score = 40.5 bits (94), Expect = 7e-04
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 62 EQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
E + V T + + ++ +L + + + + + ++ + +
Sbjct: 3 ETITVSTPIKQIFP-------DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS 53
Query: 122 PIQKITH-EAFINVPKLNL 139
I+ + + NV KL L
Sbjct: 54 DIKSVQGIQYLPNVTKLFL 72
Score = 39.7 bits (92), Expect = 0.001
Identities = 26/203 (12%), Positives = 52/203 (25%), Gaps = 13/203 (6%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN---PIQ 124
Q L LS N + D L NL L+L + P + +++ +K + +
Sbjct: 178 QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237
Query: 125 KITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK 184
I+ + P + + + I R T +
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297
Query: 185 IIANISSGLANM--------NKRQYIIKTINSLSNLTI-VAVTMSDSGIYTCRAKNGAGE 235
+ A K+ Y+ K + N
Sbjct: 298 GTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKA 357
Query: 236 VFTNISLNVIKVETAVAQPDPVY 258
T ++N+ + + +Y
Sbjct: 358 ETTEKTVNLTRYVKYIRGNAGIY 380
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 46.9 bits (112), Expect = 2e-06
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ L +++ Y L NL L + + L + L L +S +
Sbjct: 69 KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 128 HEAFINVPKLNLEDFACSPNIRPITP 153
+PK+N D + + I I P
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP 154
Score = 42.3 bits (100), Expect = 7e-05
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 69 QVLDLSDNFL--DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
+DLS N D + L L L++ ++ + ++ +L +L I
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
Score = 37.6 bits (88), Expect = 0.003
Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 35/166 (21%)
Query: 71 LDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGNPIQKITH 128
L + T ++ +L + L+ + + + ++ +++L ++
Sbjct: 28 GLLGQSSTANITEAQMNSLTYITLANINV----TDLTGIEYAHNIKDLTINNIHATNYN- 82
Query: 129 EAFINVPKL-NLEDFACSPNIRPITPDVTAEENENVTL------SCRATGSPVPKIK--- 178
+ L NLE +T D + +L S + KI
Sbjct: 83 ----PISGLSNLERLRIMGK--DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 179 -----WIFKEKIIANISSGLANMNKRQYI------IKTINSLSNLT 213
+ I +I L + + + + + + +
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFP 181
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 46.2 bits (110), Expect = 3e-06
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQKI 126
+ L +S N + + KL+NL L +S N+I L ++ +L +L L+GNP+
Sbjct: 96 EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155
Query: 127 THE 129
E
Sbjct: 156 YKE 158
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 52 CKAKNFTTIPEQLDVGT--QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILD 108
+ L + L LS N +++ + + NL L L N I+ + ++
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDA 90
Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLN 138
L EL +S N I + + L
Sbjct: 91 VADTLEELWISYNQIASL--SGIEKLVNLR 118
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 44.5 bits (105), Expect = 4e-06
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKE--KIIANISSGLANMNKRQYI--IKTIN 207
PD+ A NVTL P +I W+ + KI+ + + + ++ +
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE 70
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
+ L I V D G Y R I+L V
Sbjct: 71 NNGALHISNVRKEDKGTYYMRVLRETENELK-ITLEVF 107
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 46.4 bits (109), Expect = 4e-06
Identities = 19/101 (18%), Positives = 24/101 (23%), Gaps = 21/101 (20%)
Query: 150 PITPDVTAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
I E LSC P W N +
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSW---------------TGNALSPLDPE 172
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN--ISLNV 244
S LT+ TC+ K +V T + LNV
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 42.1 bits (98), Expect = 9e-05
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 21/137 (15%)
Query: 153 PDVTAEENENVTLSCRAT-------GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
VT +E V + C + SP + W +I N R+ +T
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 206 INSLS----------NLTIVAVTMSDSGIYTCRAKNGAGEVFT----NISLNVIKVETAV 251
+L+I M D+G Y R + G ++ ++L V +
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 252 AQPDPVYLVASLTTVVT 268
L + T ++
Sbjct: 128 DIHFLEPLESGRPTRLS 144
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 46.8 bits (110), Expect = 6e-06
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
+T+ ++VTL+C + W+ ++ + S + L
Sbjct: 15 VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS------------RWAGMGRRL 62
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ +V + DSG Y+C AG + L V
Sbjct: 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHLLV 91
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 47.2 bits (113), Expect = 6e-06
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 56 NFT-TIPEQLDVGT----QVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQ-FVPSH 105
+F +P G+ + L LS N T K+ L LDLS+N+ +P
Sbjct: 305 HFYGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 106 ILDSILELRELKLSGNPIQ-KITHEAFINVPKLNLEDFACSPN 147
+ + L L LS N I PK L++ N
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNN 404
Score = 46.1 bits (110), Expect = 1e-05
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 69 QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGN 121
LDLS N L + L L++S N + F + L L LS N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Score = 44.9 bits (107), Expect = 3e-05
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 56 NFT-TIPEQLDVGT----QVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQ-FVPSH 105
+ + + +G+ + L++S N LD KL +L LDLS N I
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170
Query: 106 I--LDSILELRELKLSGN 121
D EL+ L +SGN
Sbjct: 171 WVLSDGCGELKHLAISGN 188
Score = 41.8 bits (99), Expect = 3e-04
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 26/122 (21%)
Query: 37 STCECKWKGGKETVLCK--------------AKNFTTIPEQLDVGT--QVLDLSDNFLDR 80
C + G V C+ F+ + L T + L LS++ ++
Sbjct: 37 KNP-CTFDG----VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91
Query: 81 Y--TFRKLINLVELDLSYNQI--QFVPSHILDSILELRELKLSGNPIQ-KITHEAFINVP 135
F+ +L LDLS N + L S L+ L +S N + + +
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 136 KL 137
L
Sbjct: 152 SL 153
Score = 41.4 bits (98), Expect = 4e-04
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 56 NFT-TIPE-----QLDVGTQVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQ-FVPSH 105
NF+ IP L Q LD+S N L L L++S NQ +P
Sbjct: 211 NFSTGIPFLGDCSAL----QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 106 ILDSILELRELKLSGNPIQ-KITHEAFINVPKL 137
L S L+ L L+ N +I L
Sbjct: 267 PLKS---LQYLSLAENKFTGEIPDFLSGACDTL 296
Score = 41.4 bits (98), Expect = 4e-04
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 56 NFT-TIPEQLDVGT--QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQ-FVPSHILD 108
T IP+ + +L LS+N +L+ LDL+ N +P+ +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLNL 139
++ ++G I ++
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Score = 40.7 bits (96), Expect = 7e-04
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 59 TIPEQLD--VGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
EQL+ +++ TF +++ LD+SYN + +I I +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSM 655
Query: 114 RELK---LSGN 121
L L N
Sbjct: 656 PYLFILNLGHN 666
Score = 40.3 bits (95), Expect = 8e-04
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 56 NFT-TIPEQLDVGT-----QVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQ-FVPSHIL 107
+ + + + L +S N + + +NL LD+S N +P L
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--L 219
Query: 108 DSILELRELKLSGN 121
L+ L +SGN
Sbjct: 220 GDCSALQHLDISGN 233
Score = 39.9 bits (94), Expect = 0.001
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 56 NFT-TIPEQLDVGTQVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQ-FVPSHILDS 109
F IP Q L L++N + L LDLS N VP S
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GS 316
Query: 110 ILELRELKLSGNPIQ-KITHEAFINVPKL 137
L L LS N ++ + + + L
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGL 345
Score = 39.5 bits (93), Expect = 0.002
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 56 NFT-TIPEQLDVGT--QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQ-FVPSHILD 108
IP++L + L L N L NL + LS N++ +P I
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-G 511
Query: 109 SILELRELKLSGN 121
+ L LKLS N
Sbjct: 512 RLENLAILKLSNN 524
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 10/59 (16%)
Query: 69 QVLDLSDNFLDRYT-----FRKLINLVELDLSYNQIQ-FVPSHILDSILELRELKLSGN 121
+ LD+S N + L LD+S N++ I + EL+ L +S N
Sbjct: 203 EFLDVSSNNF---STGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSN 257
Score = 38.4 bits (90), Expect = 0.003
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 56 NFT-TIPEQLD--VGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ-FVPSHILD 108
+ IP+++ +L+L N + L L LDLS N++ +P +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MS 701
Query: 109 SILELRELKLSGN 121
++ L E+ LS N
Sbjct: 702 ALTMLTEIDLSNN 714
Score = 38.0 bits (89), Expect = 0.005
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 69 QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQ-FVPSHILDSILELRELKLSGN 121
L LS N+L + L L +L L N ++ +P ++ L L L N
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFN 476
Score = 35.7 bits (83), Expect = 0.024
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 56 NFT-TIPEQLDVGT----QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ-FVPSHI 106
NF+ I L Q L L +N T LV L LS+N + +PS +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 107 LDSILELRELKLSGN 121
S+ +LR+LKL N
Sbjct: 439 G-SLSKLRDLKLWLN 452
Score = 33.0 bits (76), Expect = 0.19
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 56 NFT-TIPEQLD--VGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ 100
+ + +IP+++ G +LDLS N LD L L E+DLS N +
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 43.8 bits (103), Expect = 6e-06
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 145 SPNIRPITP--DVTAEENENVTLSCRATGSPVPKIKWIFK--EKIIANISSGLANMNKRQ 200
S R + DV + E+ S S + + W F E++ +N G +
Sbjct: 6 SGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTW-FLNGEELKSNEPEGQVEPGALR 62
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
Y I+ L + AV DSG V + +L +
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTI 103
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 43.8 bits (103), Expect = 7e-06
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 153 PDVTAEENENVTLSCR---ATGSPVPKIKWIFK-----EKIIANISSGLANMNK----RQ 200
VT +V + C G +KW+ + I S+G R
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
+ + +L I + M D YTC + I +I++
Sbjct: 69 KVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 46.2 bits (110), Expect = 7e-06
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L + + L NL+ L+L NQI + L ++ ++ EL+LSGNP++ +
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV- 100
Query: 128 HEAFINVPKL 137
A + +
Sbjct: 101 -SAIAGLQSI 109
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
L+LS N L + L ++ LDL+ QI V L + L+ L L N I I
Sbjct: 88 TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI- 144
Query: 128 HEAFINVPKLN 138
+ L
Sbjct: 145 -SPLAGLTNLQ 154
Score = 44.7 bits (106), Expect = 2e-05
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 69 QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
QVL L N + + L NL L + Q+ + L ++ +L LK N I I
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI- 188
Query: 128 HEAFINVPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKII 186
++P NL + N I ++P VTL+ + + ++
Sbjct: 189 -SPLASLP--NLIEVHLKNNQISDVSPLANTSNLFIVTLT----NQTITNQPVFYNNNLV 241
Query: 187 ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT 226
+ + S I T+SD+G Y
Sbjct: 242 ---------------VPNVVKGPSGAPIAPATISDNGTYA 266
Score = 42.0 bits (99), Expect = 2e-04
Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 69 QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
+ + + D T L + L + + + + L L+L N I +
Sbjct: 22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79
Query: 128 HEAFINVPKL-NLEDFACSPN-IRPITP 153
+ L + + S N ++ ++
Sbjct: 80 -----PLKNLTKITELELSGNPLKNVSA 102
Score = 36.2 bits (84), Expect = 0.012
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 85 KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKLNLED 141
L N +++ + + + + + L G + I + N+ L L+D
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 43.5 bits (103), Expect = 9e-06
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 153 PDVTAEENENVTLSCRATGSPVPK--IKWIFK-------EKIIANISSGLANMNKRQYII 203
VT E E++T++C + W ++ E+ I+ + +N
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCW-YRKKSGEGNEESISKGGRYVETVNSGS--- 63
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S S L I +T+ D G Y C G
Sbjct: 64 ---KSFS-LRINDLTVEDGGTYRCGLGVAGG 90
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 43.8 bits (103), Expect = 9e-06
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 27/119 (22%)
Query: 153 PDVTAEENENVTLSCR----ATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQY 201
P+V + V L C G + + W + + G + + +
Sbjct: 10 PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69
Query: 202 -------------IIKTINSLSN--LTIVAVTMSDSGIYTCRAKN-GAGEVFTNISLNV 244
T L + L + +T+ D G YTC G V L V
Sbjct: 70 SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 43.3 bits (102), Expect = 1e-05
Identities = 16/105 (15%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPK--IKWIFKE------KIIANISSGLANMNKRQYIIK-- 204
V + E +V+++C + V + K+ ++ + + +++ + +
Sbjct: 10 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
N + I ++ DSG Y C + + ++SL V++
Sbjct: 70 PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHH 114
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 43.5 bits (103), Expect = 1e-05
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 153 PDVTAEENENVTLSCR-ATGSPVPKIKW---------IFKEKIIANISSGLANMNKRQYI 202
++ E VT+ C T + W +F +I S N Y
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVF---LIRQDSYKKENATVGHYS 64
Query: 203 IK--TINSLSNLTIVAVTMSDSGIYTC 227
+ S L I A + DS +Y C
Sbjct: 65 LNFQKPKSSIGLIITATQIEDSAVYFC 91
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKE------KIIANISSGLANMNKRQYII---KT 205
V E ++T+ C +KW + KI+ S + + + I +
Sbjct: 12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK 71
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + +T+ + +D+ Y C + ++ + + +
Sbjct: 72 NRTFT-VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 42.3 bits (100), Expect = 2e-05
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 153 PDVTAEENENVTLSCR-ATGSPVPKIKW---------IFKEKIIANISSGLANMNKRQYI 202
++ E VT+ C T + W +F +I S N Y
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVF---LIRQDSYKKENATVGHYS 64
Query: 203 IK--TINSLSNLTIVAVTMSDSGIYTC 227
+ S L I A + DS +Y C
Sbjct: 65 LNFQKPKSSIGLIITATQIEDSAVYFC 91
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 42.3 bits (99), Expect = 2e-05
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 155 VTAEENENVTLSCR--ATGSPVPKIKWI--------FKEKIIANISSGLANMNKRQYIIK 204
+ + VTL C + + W +++ + + + +Y +
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 205 TINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV-IKVETA 250
LTI DSG+Y CR + F ++ NV +++ A
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCCRIEVPG--WFNDVKKNVRLELRRA 112
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 43.3 bits (102), Expect = 3e-05
Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR--QYII 203
+T E E L+C S W + + +IA + R +
Sbjct: 8 QSLTVWEGETAILNCSYEDSTFDYFPW-YHQFPGESPALLIAIRPVSNKKEDGRFTIFFN 66
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKN-----GAGEVFTNISLNVIKVETAVAQPDP-V 257
K S L I DS Y C A + G G V+ + P+P V
Sbjct: 67 KREKKFS-LHIADSQPGDSATYFCAASDNRIFFGDGTQLV--------VKPNIQNPEPAV 117
Query: 258 Y 258
Y
Sbjct: 118 Y 118
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 44.0 bits (104), Expect = 3e-05
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNK------RQY 201
V + + ++C I W + + + S +++ +Y
Sbjct: 10 KSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKY 69
Query: 202 II--KTINSLSNLTIVAVTMSDSGIYTC 227
T +L + + + +DSG+Y C
Sbjct: 70 DTYGSTRKNLR-MILRNLIENDSGVYYC 96
Score = 40.2 bits (94), Expect = 5e-04
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKE-----KIIANISSGLANMNKRQYII--- 203
V+ + VTL+C S I W + + S N +Y +
Sbjct: 144 SSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFK 203
Query: 204 KTINSLSNLTIVAVTMSDSGIYTC 227
K S++ LTI A+ + DS Y C
Sbjct: 204 KAAKSVA-LTISALQLEDSAKYFC 226
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 41.9 bits (98), Expect = 4e-05
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 19/112 (16%)
Query: 153 PDVTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQYI------ 202
+V VTL C S W ++ + + S + YI
Sbjct: 7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66
Query: 203 ---IKTINSLSN----LTIVAVTMSDSGIYTCRAKN--GAGEVFTNISLNVI 245
I+ + S + I + SD+G +TC KN + ++L V
Sbjct: 67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 43.1 bits (101), Expect = 4e-05
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTIN 207
++ E EN+ L+C T S + ++W ++ + I S +
Sbjct: 8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK 67
Query: 208 S--LSNLTIVAVTMSDSGIYTCRAKNGAG 234
S S L I A DS Y C + +G
Sbjct: 68 SSGRSTLYIAASQPGDSATYLCAVRPTSG 96
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 41.2 bits (97), Expect = 4e-05
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKE------KIIANISSGLANMNKRQYII---K 204
+V+ +E ++T+ CR T K+ + K + + + K + I +
Sbjct: 10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ 69
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
+ +T+ + MSD+GIY C G + +++N+ V T
Sbjct: 70 RDFIFT-VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVPT 113
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 41.8 bits (98), Expect = 5e-05
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 16/105 (15%)
Query: 155 VTAEENENVTLSCR---ATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTI 206
+ A + L CR + ++ W ++ + +Y +T
Sbjct: 16 IRALVGDEAELPCRISPGKNATGMEVGW-YRSPFSRVVHLYRNGKDQDAEQAPEYRGRTE 74
Query: 207 NSLSN-------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ L I V SD G YTC ++ + + + L V
Sbjct: 75 LLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 40.3 bits (94), Expect = 1e-04
Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 10/100 (10%)
Query: 155 VTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYI-------IKTI 206
V E+VT V I W K + I +
Sbjct: 9 VNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHAL 68
Query: 207 NSLSNLTIVAVTMSDSGIYTCR--AKNGAGEVFTNISLNV 244
NL I + M D+G Y + +L +
Sbjct: 69 GPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 41.7 bits (98), Expect = 1e-04
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P + VTL C+ G + +++E + + +
Sbjct: 12 PGSVITQGSPVTLRCQ--GGQETQEYRLYRE--------KKTAPWITRIPQELVKK-GQF 60
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEV 236
I ++T +G Y C +
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGR 84
Score = 36.7 bits (85), Expect = 0.005
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYI 202
P + P NVTL C S V +I KE +N + +
Sbjct: 100 IKPTLS-AQPSPVVNSGGNVTLQCD---SQVAFDGFILCKE----GEDEHPQCLNSQPHA 151
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKN 231
+ S + ++ V+ S Y C A +
Sbjct: 152 RGS--SRAIFSVGPVSPSRRWWYRCYAYD 178
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 40.4 bits (94), Expect = 1e-04
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 155 VTAEENENVTLSCRATGSP--VPKIKWIFKE-----KIIANISSGLANMNKRQYII---K 204
+ + + +T+ C+ + K W + + S ++ I
Sbjct: 20 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRA-KNGAGEVFTNISLNVI 245
+ +T+ + DSG Y CR + V ++ ++
Sbjct: 80 DAGFFT-VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 41.3 bits (97), Expect = 1e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P + + VT+ C+ G+ + E G R + IN
Sbjct: 11 PHFMVPKEKQVTICCQ--GNYGAVEYQLHFE--------GSLFAVDRPKPPERINK-VKF 59
Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
I + +G Y+C + G
Sbjct: 60 YIPDMNSRMAGQYSCIYRVGEL 81
Score = 33.2 bits (76), Expect = 0.064
Identities = 12/79 (15%), Positives = 18/79 (22%), Gaps = 14/79 (17%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ P E VT CR + + G +
Sbjct: 104 VHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYG--------------KVQA 149
Query: 211 NLTIVAVTMSDSGIYTCRA 229
+ VT + G Y C
Sbjct: 150 EFPLGPVTTAHRGTYRCFG 168
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 41.6 bits (97), Expect = 1e-04
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYII-- 203
VT E ++ L C+ + S P + W + + ++ S +
Sbjct: 17 ARVTVSEGASLQLRCKYSYSATPYLFW-YVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75
Query: 204 -KTINSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDP 256
K+ +S L +V SDS +Y C AK ++ + V + PDP
Sbjct: 76 SKSDSSFH-LRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLT-VSPNIQNPDP 129
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 42.0 bits (98), Expect = 2e-04
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 14/129 (10%)
Query: 153 PDVTAEENENVTLSCRATGSPVP-----KIKWIFK-----EKIIANISSGLANMNKRQYI 202
N+NVT+ C S I W +K +++ G R
Sbjct: 11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70
Query: 203 IKTINSLSN----LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
I + L + L + + + ++G Y C + + L V+ + D V
Sbjct: 71 IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVG 130
Query: 259 LVASLTTVV 267
+ + +
Sbjct: 131 MKENEDKYM 139
Score = 32.0 bits (72), Expect = 0.23
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 150 PITPDVTAEENENVTLSCRATG-SPVP-KIKWIF---KEKIIANISSGLANMNKRQYIIK 204
+ D + C ++G P I W K IS + + +
Sbjct: 123 RLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDG 182
Query: 205 TINSLSNLTIVAVTMSDSGIYTCR 228
T N S L + + +Y C
Sbjct: 183 TFNVTSCLKLNSSQEDPGTVYQCV 206
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 41.8 bits (98), Expect = 2e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P + + VT+ C+ G+ + E G R + IN
Sbjct: 14 PHFMVPKEKQVTICCQ--GNYGAVEYQLHFE--------GSLFAVDRPKPPERINK-VKF 62
Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
I + +G Y+C + G
Sbjct: 63 YIPDMNSRMAGQYSCIYRVGEL 84
Score = 35.3 bits (81), Expect = 0.021
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
+ P E VT CR + + KE G ++ +R +
Sbjct: 107 VHPGPEVISGEKVTFYCRLDTATSMFLLL--KE--------GRSSHVQRG----YGKVQA 152
Query: 211 NLTIVAVTMSDSGIYTCRA 229
+ VT + G Y C
Sbjct: 153 EFPLGPVTTAHRGTYRCFG 171
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.4 bits (98), Expect = 2e-04
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 13/116 (11%)
Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
+ C + + L C S + ++ W F+ ++ S
Sbjct: 528 DASVCPDKSKGSYRQHFFKHGGTAELKCSQK-SNLARVFWKFQNGVLKAESPK------- 579
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISLNVIKVETAVAQP 254
Y + NL I ++ DSG+Y C ++ + + + V +P
Sbjct: 580 -YGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 631
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 41.4 bits (97), Expect = 2e-04
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
+V + C+ + + K + R+ I + +
Sbjct: 24 GSVKIQCQ--AIREAYLTQLMIIK------NSTYREIGRRLKFWNETD-PEFVIDHMDAN 74
Query: 221 DSGIYTCRAKNGAG 234
+G Y C+ + G
Sbjct: 75 KAGRYQCQYRIGHY 88
Score = 37.9 bits (88), Expect = 0.002
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 136 KLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN 195
+L + P + + EN++L+C + P + KE G +
Sbjct: 97 ELVVTGLYGKPFLS-ADRGLVLMPGENISLTCSSAHIPFDRFSL-AKE--------GELS 146
Query: 196 MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231
+ + Q + +N ++ V ++ SGIY C
Sbjct: 147 LPQHQ----SGEHPANFSLGPVDLNVSGIYRCYGWY 178
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 41.2 bits (96), Expect = 2e-04
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 151 ITPD--VTAEENENVTLSCRATGSPVPK---IKWIFK--EKIIANISSG-------LANM 196
+ P + A E+ L C + + +KW+ +++ + G A
Sbjct: 8 LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67
Query: 197 NKRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
R I++ + L I VT SDSG Y C ++G + L V + + +
Sbjct: 68 RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD 127
Query: 255 DPVY 258
Y
Sbjct: 128 VKGY 131
Score = 40.5 bits (94), Expect = 4e-04
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ + DV ++ + L CR+TG P P+I+W + G ++
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS--------NNKGENIPTVEAPVV 169
Query: 204 KTINSLSNLT-IVAVTMSDSGIYTCRAKNGAGE 235
L + V + S +C ++
Sbjct: 170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG 202
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 41.1 bits (96), Expect = 2e-04
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
+ +E ++ +C S + W ++ + + +G R
Sbjct: 8 QSLHVQEGDSTNFTCSFPSSNFYALHW-YRWETAKSPEALFVMTLNGDEKKKGR-ISATL 65
Query: 206 INS--LSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
S L I DS Y C G F
Sbjct: 66 NTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYF 99
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 40.8 bits (95), Expect = 2e-04
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR-QYIIK 204
VT E V L+C + P + W + + ++ + + ++ +
Sbjct: 9 GLVTLTEGLPVMLNCTYQSTYSPFLFW-YVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH 67
Query: 205 TINSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
+S +L + +SDS +Y C + + + V + P+P
Sbjct: 68 KSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAV 123
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 41.5 bits (97), Expect = 2e-04
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIF-----KEKIIANISSGLANMNKRQYIIKTI 206
V+ E+ L C T PV I+W +E I + K
Sbjct: 11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRE 70
Query: 207 NSLSNLTIVAVTMSDSGIYTCRA--KNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
N +++I +T +D+G Y C K F + + + V + P A T
Sbjct: 71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARAT 130
Query: 265 TVVTIILTACFVV 277
T+ T C
Sbjct: 131 PQHTVSFT-CESH 142
Score = 33.0 bits (75), Expect = 0.13
Identities = 25/148 (16%), Positives = 42/148 (28%), Gaps = 8/148 (5%)
Query: 131 FINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIAN 188
F + L A P A V+ +C + G SP +KW FK
Sbjct: 103 FKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKW-FKNG--NE 159
Query: 189 ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
+S N++ + + S +V C + + + E
Sbjct: 160 LSDFQTNVDPVGES-VSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDP-LRGTANLSE 217
Query: 249 TAVAQPDPVYLVASLTTVVTIILTACFV 276
T P + + +T C V
Sbjct: 218 TIRVPPTLEVTQQPVRAENQVNVT-CQV 244
Score = 30.3 bits (68), Expect = 0.87
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 11/126 (8%)
Query: 125 KITHEA---FINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVP-KIKW 179
++ H NL + P +T EN+ V ++C+ P ++ W
Sbjct: 198 EVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQ-VNVTCQVRKFYPQRLQLTW 256
Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA-GEVFT 238
+ + ++ NK T N +S L + D TC+ ++ V
Sbjct: 257 LENGNVSRTETASTVTENKD----GTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSK 312
Query: 239 NISLNV 244
+ L V
Sbjct: 313 SHDLKV 318
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 38.9 bits (91), Expect = 2e-04
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 27/115 (23%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
P++ + P + VTL C ++ G +K + +
Sbjct: 6 PSLS-LHPSQGVSLGDTVTLRCHLPRMAA--WVQLWLN--------GTLRFDKEKDKEQD 54
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
S + D+G Y CR + +N S DPV LV
Sbjct: 55 AAEFS---FAVTNLEDAGTYQCRYQVSEPLWTSNQS-------------DPVELV 93
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 40.6 bits (95), Expect = 2e-04
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P +VT+ C+ G+ + + KE RQ ++ N +
Sbjct: 12 PGSVISWGNSVTIWCQ--GTLEAREYRLDKE--------ESPAPWDRQNPLEPKNK-ARF 60
Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
+I ++T +G Y C ++ G
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVG 82
Score = 37.9 bits (88), Expect = 0.002
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLAN 195
L + P + P ++VTL C+ S P ++ KE+ + +
Sbjct: 92 LVMTGAYSKPTLSA-LPSPLVTSGKSVTLLCQ---SRSPMDTFLLCKERAAHPLLCLRSE 147
Query: 196 MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232
+Q + + VT G Y C + +G
Sbjct: 148 HGAQQ-------HQAEFPMSPVTSVHGGTYRCFSSHG 177
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 153 PDVTAEENENVTLSCRATGS------------PVPKIKWIFKEKIIANISSGLANMNKRQ 200
PD T V L C P +++F + S A+ + +
Sbjct: 8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFY---GDDSRSEGADFTQGR 64
Query: 201 YII---KTINSLSNLTIVAVTMSDSGIYTC 227
+ + T + L I V DS Y C
Sbjct: 65 FSVKHILTQKAFH-LVISPVRTEDSATYYC 93
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 158 EENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
+ E V L C S + + KE I + S + ++ S +N +I
Sbjct: 131 KSGERVILQCW---SDIMFEHFFLHKEGISKDPSRLVGQIHDGV-------SKANFSIGP 180
Query: 217 VTMSDSGIYTCRAKNG 232
+ ++ +G Y C
Sbjct: 181 MMLALAGTYRCYGSVT 196
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P +VTL C ++KE I +
Sbjct: 31 PSAVVPRGGHVTLRCH--YRHRFNNFMLYKED------------RIHIPIFHGRIFQESF 76
Query: 213 TIVAVTMSDSGIYTCRAKNG 232
+ VT + +G YTCR +
Sbjct: 77 NMSPVTTAHAGNYTCRGSHP 96
Score = 30.6 bits (69), Expect = 0.74
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
P + E+VTLSC + S +E G A+ + ++ +N
Sbjct: 224 AQPGPKVQAGESVTLSCSSRSSYDM-YHL-SRE--------GGAHERRLP-AVRKVNRTF 272
Query: 211 NLTIVAVTMSDSGIYTCRA 229
+ G Y C
Sbjct: 273 QADFPLGPATHGGTYRCFG 291
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 39.1 bits (91), Expect = 3e-04
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 155 VTAEENENVTLSCRATGSPVPK-----IKWIFKEK-IIANISSGLANMNK--RQYIIKTI 206
+ A NE L C+ S + W +E ++ + G + +Y+ +T
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 207 NSLSNLT--IVAVTMSDSGIYTCR--AKNGAGEVF---TNISLNVI 245
+ T + + + D G+Y C K G + N L+V+
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 41.5 bits (98), Expect = 3e-04
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 69 QVLDLSDNFLDRYTFRKLI----NLVELDLSYNQIQFVPSHILDSILE----LRELKLSG 120
Q LD+ L + +L+ + L + + S L L EL L
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65
Query: 121 NPIQ 124
N +
Sbjct: 66 NELG 69
Score = 36.1 bits (84), Expect = 0.017
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 69 QVLDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFVPSHILDSILE----LREL 116
L+L N L + + +L L + +L S L L+EL
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 117 KLSGNPIQ 124
LS N +
Sbjct: 119 HLSDNLLG 126
Score = 35.7 bits (83), Expect = 0.020
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQIQFVPSHILDSILE----LREL 116
Q L LSDN L + L L +L L Y + L S+L +EL
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 117 KLSGNPIQ 124
+S N I
Sbjct: 176 TVSNNDIN 183
Score = 34.9 bits (81), Expect = 0.032
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQIQFVPSHILDSILE----LREL 116
+ L L N L +L L L + I L +L L+EL
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289
Query: 117 KLSGNPIQ 124
L+GN +
Sbjct: 290 SLAGNELG 297
Score = 34.2 bits (79), Expect = 0.060
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFL-DRY------TFRKLINLVELDLSYNQIQFVPSHILDSILE-----LREL 116
Q L L + L T R L L EL LS N + +L L L +L
Sbjct: 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147
Query: 117 KLSGNPI 123
+L +
Sbjct: 148 QLEYCSL 154
Score = 33.4 bits (77), Expect = 0.099
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQFVPSHILDSILE-----LREL 116
QV+ L D L R L EL+L N++ V H + L+ +++L
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 117 KLSGNPI 123
L +
Sbjct: 91 SLQNCCL 97
Score = 33.4 bits (77), Expect = 0.12
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQIQFVPSHILDSILE----LREL 116
+ L L+ N L R L L L + S+L L EL
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346
Query: 117 KLSGNPIQ 124
++S N ++
Sbjct: 347 QISNNRLE 354
Score = 33.0 bits (76), Expect = 0.15
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 12/82 (14%)
Query: 69 QVLDLSDNFLDRYTFRKLI-------NLVELDLSYNQIQFVPSHILDSILE-----LREL 116
+VL L+D + + L +L ELDLS N + L + L +L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 117 KLSGNPIQKITHEAFINVPKLN 138
L + + + K
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDK 454
Score = 33.0 bits (76), Expect = 0.15
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFLDRY-------TFRKLINLVELDLSYNQI-----QFVPSHILDSILELREL 116
+ L L L R + EL +S N I + + + DS +L L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 117 KLSGNPI 123
KL +
Sbjct: 205 KLESCGV 211
Score = 32.6 bits (75), Expect = 0.17
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 12/82 (14%)
Query: 69 QVLDLSDNFLDR-------YTFRKLINLVELDLSYNQI-----QFVPSHILDSILELREL 116
+ L L + +L EL L N++ + +L LR L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 117 KLSGNPIQKITHEAFINVPKLN 138
+ I V +
Sbjct: 262 WIWECGITAKGCGDLCRVLRAK 283
Score = 31.9 bits (73), Expect = 0.31
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFLDRYTFRKL-------INLVELDLSYNQI-----QFVPSHILDSILELREL 116
+ L + + + L +L EL L+ N++ + + +L+ +L L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 117 KLSGNPI 123
+
Sbjct: 319 WVKSCSF 325
Score = 30.3 bits (69), Expect = 0.92
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLI-------NLVELDLSYNQIQFV-PSHILDSILE----LREL 116
+ L + L+EL +S N+++ + + + LR L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375
Query: 117 KLSGNPI 123
L+ +
Sbjct: 376 WLADCDV 382
Score = 30.3 bits (69), Expect = 0.93
Identities = 4/37 (10%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 88 NLVELDLSYNQIQFVP-SHILDSILELRELKLSGNPI 123
++ LD+ ++ + +L + + + ++L +
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 40
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 40.2 bits (93), Expect = 3e-04
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
+V L+C +KW + + + + +++ + +
Sbjct: 15 TSVELTCPL--DSDENLKWEKNGQELPQ-------KHDKHLVLQDFSE----------VE 55
Query: 221 DSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
DSG Y C + + V + A
Sbjct: 56 DSGYYVCYTPASNKNTYLYLKARVGSADDA 85
Score = 36.8 bits (84), Expect = 0.006
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 19/98 (19%)
Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
+D + + + + + + +V L+C G IKW+ II+ +++ K
Sbjct: 102 KDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNA-----TKN 153
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ G Y C+
Sbjct: 154 T-----------WNLGNNAKDPRGTYQCQGAKETSNPL 180
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 39.1 bits (91), Expect = 4e-04
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 14/102 (13%)
Query: 153 PDVTAEENENVTLSCR------ATGSPVPKIKWIFK-----EKIIANISSGLANMNKRQY 201
+V + + C S W + + +I + L + R
Sbjct: 8 KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67
Query: 202 IIKTINSLSN---LTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
N L + + DSG Y R + + ++
Sbjct: 68 AELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDV 109
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 40.0 bits (93), Expect = 5e-04
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR-QYIIK 204
VT EN+ + ++C + + P + W + + ++ ++ ++ +
Sbjct: 8 GQVTLSENDFLFINCTYSTTGYPTLFW-YVQYSGEGPQLLLQVTTANNKGSSRGFEATYD 66
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ +L +V DS +Y C A +G + F
Sbjct: 67 KGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRF 99
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 40.0 bits (93), Expect = 5e-04
Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
++ E +L+C ++ W +++ +++ S G + +
Sbjct: 10 ESLSVPEGGMASLNCTSSDRNFQYFWW-YRQHSGEGPKALMSIFSDGDKKEGRFTAHLNK 68
Query: 206 INSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
+ +L I SDS +Y C +N + T + V + PDP
Sbjct: 69 ASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRD 128
Query: 264 TTVVTIILTACFV 276
+ + C
Sbjct: 129 SKSSDK--SVCLF 139
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 40.6 bits (94), Expect = 5e-04
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 11/110 (10%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
L+ F + E + T+ C G + ++ +
Sbjct: 180 YQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG 239
Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIY--TCRAKNGAGEVFTNISLNV 244
N +S S V+VT D G TC G T ++ +
Sbjct: 240 N---------DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
Score = 35.6 bits (81), Expect = 0.020
Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 15/161 (9%)
Query: 92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPI 151
++ + + + + EL ++ P+ + K L + +
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELA 92
Query: 152 TPDVTAEENENVTLSCRATGS-PVPK--IKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
+N+TL C+ G P + + EK + +
Sbjct: 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE----------- 141
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
T++ ++CR + + N
Sbjct: 142 -VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Score = 32.5 bits (73), Expect = 0.19
Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 16/92 (17%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
V +V ++C + + + K++ + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGI-------------ETPLPKKE---LLLPGNNRK 50
Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + C + G+ L V
Sbjct: 51 VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV 82
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 38.2 bits (88), Expect = 5e-04
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 19/92 (20%)
Query: 152 TPDVTAEENE------NVTLSCRATGSPVPKIKWIFKEKII-ANISSGLANMNKRQYIIK 204
+T + V L+C P +I W +K I + ++ +K
Sbjct: 7 MGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
+ + SG Y C + E
Sbjct: 65 EFS----------ELEQSGYYVCYPRGSKPED 86
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 38.3 bits (89), Expect = 5e-04
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 155 VTAEENENVTLSCRATGSPVPK-IKWIFKEK------IIANISSGLANMN---KRQYIIK 204
+E + + + C T K + +A N + + I++
Sbjct: 9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 68
Query: 205 TINSLS--NLTIVAVTMSDSGIYTC---RAKNGAGEVFTNISLNVIK 246
+ + +V + + DSG+Y C + +F I L V K
Sbjct: 69 DYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTK 115
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 40.8 bits (95), Expect = 5e-04
Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 26/129 (20%)
Query: 153 PDVTAEENENVTLSCR-------ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
+ + N T C I W I ++
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-----------PKEQYTII 59
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD--PVYLVASL 263
+ S++T + S + TC F + NV + P P L +
Sbjct: 60 NRTASSVTFTDIA-SLNIQLTCNILT-----FGQLEQNVYGITIISGLPPEKPKNLSCIV 113
Query: 264 TTVVTIILT 272
+
Sbjct: 114 NEGKKMRCE 122
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 38.7 bits (89), Expect = 7e-04
Identities = 14/103 (13%), Positives = 22/103 (21%), Gaps = 23/103 (22%)
Query: 153 PDVTAEENENVTLSCRATGSP---VPKIKWIF----KEKIIANISSGLANMNKRQYIIKT 205
+V V L C + P I W+ + ++
Sbjct: 12 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 71
Query: 206 INSLS----------------NLTIVAVTMSDSGIYTCRAKNG 232
S L + V D G Y C+
Sbjct: 72 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 38.4 bits (89), Expect = 7e-04
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 172 SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231
S K+ +IF EK I ++++ II+ + + + D G YT + ++
Sbjct: 65 SSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIE-------MFMEKLQDEDEGTYTFQIQD 117
Query: 232 GAGEVFTNISLNVIK 246
G + +L +I
Sbjct: 118 GKAT--GHSTLVLIG 130
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 39.5 bits (92), Expect = 7e-04
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E V L C + + + +E + + + + S +N +I +T
Sbjct: 21 SEETVILQCW--SDVMFEHFLLHREGMFNDTLRLIGEHHDGV-------SKANFSISRMT 71
Query: 219 MSDSGIYTCRAKNG 232
+G Y C
Sbjct: 72 QDLAGTYRCYGSVT 85
Score = 29.9 bits (67), Expect = 1.1
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
P T ENVTLSC + S + +E G A+ + +N
Sbjct: 113 AQPGPTVLAGENVTLSCSSRSSYDMYH--LSRE--------GEAHERRLP-AGPKVNGTF 161
Query: 211 NLTIVAVTMSDSGIYTCR 228
+ G Y C
Sbjct: 162 QADFPLGPATHGGTYRCF 179
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 39.7 bits (92), Expect = 7e-04
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTIN 207
+ + EN L C + +P ++W ++ ++ + + +Y
Sbjct: 9 QSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDK 68
Query: 208 SL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
S L I A + D+ Y C + +F S + V + P+P
Sbjct: 69 DAKHSTLHITATLLDDTATYFCVVGDRGSALF--GSGTQLIVIPYIQNPEP 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 40.1 bits (94), Expect = 8e-04
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 51 LCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFV 102
L K +IP + LDLS N L ++ +L ++V L+L N +
Sbjct: 187 LAKF--LASIPASV----TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240
Query: 103 PSHILDSILE----LRELKLSGNPIQKITHEA 130
L + + L+ + L + ++ ++ E
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272
Score = 36.6 bits (85), Expect = 0.009
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 69 QVLDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFVPSHILDSILE-----LRE 115
L+L N L +L ++ LDLS N + L I +
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229
Query: 116 LKLSGNPIQKITHEAFINVPKLN 138
L L N + + E +
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSL 252
Score = 34.7 bits (80), Expect = 0.044
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 69 QVLDLSDNFLDRYTFRKLI-------NLVELDLSYNQIQFVPSHILDSILE-------LR 114
L+L N L + L +L + L Y+ ++ + ++ +
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 115 ELKLSGNPIQ 124
+ +G I
Sbjct: 288 LVDKNGKEIH 297
Score = 33.5 bits (77), Expect = 0.086
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQIQFVPSHILDSILE-----LRE 115
VLDL N + + ++ L+L N + S L IL +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 116 LKLSGNPIQ 124
L L GN +
Sbjct: 172 LNLRGNNLA 180
Score = 33.1 bits (76), Expect = 0.11
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLINLVE--------LDLSYNQIQFVPSHILDSIL-----ELRE 115
++D + + + NL+ L + F H + ELRE
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346
Query: 116 LKLSGNPIQKITH 128
+ P+ + H
Sbjct: 347 SIQTCKPLLEHHH 359
Score = 32.4 bits (74), Expect = 0.23
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQI-----QFVPSHILDSILELRE 115
L+LS N L +L+ N+ L+LS N + + + +
Sbjct: 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV 113
Query: 116 LKLSGNPIQKITHEAFINV 134
L L N + F
Sbjct: 114 LDLGWNDFSSKSSSEFKQA 132
Score = 32.0 bits (73), Expect = 0.27
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 69 QVLDLSDNFLDRYTFRKLIN--------LVELDLSYNQIQFVPSHILDSILE-----LRE 115
L+LS NFL + +L+ + LDL +N S +
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142
Query: 116 LKLSGNPI 123
L L GN +
Sbjct: 143 LNLRGNDL 150
Score = 31.2 bits (71), Expect = 0.58
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 88 NLVELDLSYNQIQFVPSHILDSILE-----LRELKLSGNPI 123
+ LDLS N + + + L + L LSGN +
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
P +VT+ C+ G+ + + KE G Q ++ N +
Sbjct: 12 PGSVISRGNSVTIRCQ--GTLEAQEYRLVKE--------GSPEPWDTQNPLEPKNK-ARF 60
Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
+I ++T +G Y C + AG
Sbjct: 61 SIPSMTEHHAGRYRCYYYSPAG 82
Score = 36.4 bits (84), Expect = 0.008
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
P ENVTL C S + ++I E+ +S L + +
Sbjct: 105 ALPSPVVTSGENVTLQCG---SRLRFDRFILTEEGDHKLSWTLDSQLTPSG-----QFQA 156
Query: 211 NLTIVAVTMSDSGIYTCRAKN 231
+ VT S + C
Sbjct: 157 LFPVGPVTPSHRWMLRCYGSR 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 39.2 bits (91), Expect = 0.001
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 69 QVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSI--LELRELKLSGN 121
L+LS+N L R +K NL L+LS N+++ LD I L+L EL L GN
Sbjct: 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGN 230
Query: 122 PI 123
+
Sbjct: 231 SL 232
Score = 30.7 bits (69), Expect = 0.55
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 84 RKLINLVELDLSYNQIQFVP--SHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
+ L+ L+LS N++ + S I+ L+ L LSGN ++ + L LE+
Sbjct: 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224
Query: 142 FACSPNIRPITPDVTAEEN 160
N + +
Sbjct: 225 LWLDGN--SLCDTFRDQST 241
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 38.7 bits (90), Expect = 0.001
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
++TA E V ++C S + W +++ + N+ GL + +
Sbjct: 7 TEMTATEGAIVQINCTYQTSGFNGLFW-YQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSR 65
Query: 206 INSLSNLTIVAVTMSDSGIYTC 227
S L + + M DS Y C
Sbjct: 66 SKGYSYLLLKELQMKDSASYLC 87
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
++ + V+ N LSC S W KE + + G + N
Sbjct: 495 KECPNPKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNC- 552
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISLNV 244
L I +T G Y C A+ + L
Sbjct: 553 -----------ILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLP 587
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 37.5 bits (87), Expect = 0.001
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 155 VTAEENENVTLSCRATGSPVPK-IKWIFKEK------IIANISSGLANMNKRQ---YIIK 204
+E + + + C T K + +A N + Q I++
Sbjct: 14 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 73
Query: 205 TINSLS--NLTIVAVTMSDSGIYTC---RAKNGAGEVFTNISLNV 244
+ + +V + + DSG+Y C + +F I L V
Sbjct: 74 DYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 38.8 bits (90), Expect = 0.002
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
E V L C + + +E + + + S +N +I +
Sbjct: 20 SEETVILQCW--SDVRFQHFLLHREGKFKDTLH----LIGEHH---DGVSKANFSIGPMM 70
Query: 219 MSDSGIYTCRAKNG 232
+G Y C
Sbjct: 71 QDLAGTYRCYGSVT 84
Score = 30.7 bits (69), Expect = 0.64
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
+ + P++ P T E+VTLSC + S + + +E G A+
Sbjct: 99 IVITGLYEKPSLS-AQPGPTVLAGESVTLSCSSRSSYD--MYHLSRE--------GEAHE 147
Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
+ +N + G Y C
Sbjct: 148 RRFSAG-PKVNGTFQADFPLGPATHGGTYRCFG 179
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 17/72 (23%)
Query: 69 QVLDLSDNFLDRYT-------------FRKLINLVELDLSYNQIQFVPSHILDSILE--- 112
++ + SD F R K L + LS N L L
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 113 -LRELKLSGNPI 123
L L L N +
Sbjct: 123 PLEHLYLHNNGL 134
Score = 36.2 bits (84), Expect = 0.015
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 69 QVLDLSDNFLDRY-------TFRKLINLVELDLSYNQIQFV-PSHILDSILE-----LRE 115
+VLDL DN + NL EL L+ + + ++D+ + L+
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278
Query: 116 LKLSGNPI 123
L+L N I
Sbjct: 279 LRLQYNEI 286
Score = 33.5 bits (77), Expect = 0.11
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 12/67 (17%)
Query: 69 QVLDLSDNFLDR-------YTFRKLINLVELDLSYNQI-----QFVPSHILDSILELREL 116
+ + N L+ TF+ L + + N I + + L EL+ L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221
Query: 117 KLSGNPI 123
L N
Sbjct: 222 DLQDNTF 228
Score = 33.1 bits (76), Expect = 0.12
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 69 QVLDLSDNFLDRY-------TFRKLIN--LVELDLSYNQIQFVPSHILDSILE-----LR 114
+ L L+D L F KL N L L L YN+I+ L ++++ L
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306
Query: 115 ELKLSGNPI 123
L+L+GN
Sbjct: 307 FLELNGNRF 315
Score = 32.8 bits (75), Expect = 0.19
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 69 QVLDLSDNFLDRYTFRKLI--------NLVELDLSYNQIQFVPSHILDSILE----LREL 116
+ + N + L+ L LDL N + S L L+ LREL
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249
Query: 117 KLSGNPIQ 124
L+ +
Sbjct: 250 GLNDCLLS 257
Score = 32.4 bits (74), Expect = 0.20
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 11/80 (13%)
Query: 69 QVLDLSDNFLDRYTFRKLI-------NLVELDLSYNQIQFVPSHILDSILE----LRELK 117
+ L + + + + ++ E+ LS N I + L + L +
Sbjct: 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66
Query: 118 LSGNPIQKITHEAFINVPKL 137
S ++ E + L
Sbjct: 67 FSDIFTGRVKDEIPEALRLL 86
Score = 28.9 bits (65), Expect = 2.6
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 20/75 (26%)
Query: 69 QVLDLSDNFL----------------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
+ L L +N L + L + N+++ +
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 113 ----LRELKLSGNPI 123
L +K+ N I
Sbjct: 185 SHRLLHTVKMVQNGI 199
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 38.0 bits (88), Expect = 0.002
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIK 204
+ + E E V L C T S I W +++ +I ++S + N I +
Sbjct: 7 NSMESNEEEPVHLPCNHSTISGTDYIHW-YRQLPSQGPEYVIHGLTSNVNNRMASLAIAE 65
Query: 205 TINSLSNLTIVAVTMSDSGIYTC 227
S S L + T+ D+ +Y C
Sbjct: 66 DRKS-STLILHRATLRDAAVYYC 87
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 37.7 bits (87), Expect = 0.002
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYI--IKT 205
+ E +N TL C T SP ++W ++ + ++ + +Y +
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA 70
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI--SLNVIKVETAVAQPDPVY 258
S+L I A +SDS Y C + + + V + PDP
Sbjct: 71 DTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAV 125
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 36.5 bits (85), Expect = 0.003
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK------EKIIANISSGLANMNKRQYIIK 204
+T E E++T++C S W K E+ I++ + +N+
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS---- 63
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S S L I +T+ DSG Y C+ ++ G
Sbjct: 64 --KSFS-LRINDLTVKDSGTYRCKPESRYG 90
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 37.2 bits (86), Expect = 0.004
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
++ E + L C T + + ++W F++ + S N +
Sbjct: 9 SALSLHEGTDSALRCNFTTT-MRSVQW-FRQNSRGSLISLFYLASGTKENGRLKSAFDSK 66
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN--------VIKVETAVAQPDP- 256
S L I + DSG Y C A + + + VE P
Sbjct: 67 ERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP 126
Query: 257 -VYLVASLTTVV 267
V+++ + T V
Sbjct: 127 SVFIMKNGTNVA 138
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 36.1 bits (83), Expect = 0.005
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 153 PDVTAEENENVTLSCR-------ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
VT +E V + C T S W I+ + N +T
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 206 INSLS----------NLTIVAVTMSDSGIYTCRAKNG 232
+ L+I MSD+G Y R + G
Sbjct: 74 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG 110
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 35.3 bits (82), Expect = 0.005
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR--QYII 203
+T E E L+C S W +++ +I+ +S + R +
Sbjct: 7 QSLTVWEGETAILNCSYENSAFDYFPW-YQQFPGEGPALLISILSVSDKKEDGRFTIFFN 65
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
K LS L I DS Y C A +G
Sbjct: 66 KREKKLS-LHIADSQPGDSATYFCAASANSGTYQR 99
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 36.5 bits (84), Expect = 0.005
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF----------KEKIIANISSGLA 194
+P +R + AE + V L C GS W+F + S
Sbjct: 9 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKI 68
Query: 195 NMNKRQYIIKTINSLSN------LTIVAVTMSDSGIYTCRAKNGAGEVF 237
+++ K +++ + LT+ + + G Y C + + F
Sbjct: 69 TWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 117
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 36.6 bits (84), Expect = 0.006
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 153 PDVTAEENENVTLSCR-ATGSPVPKIKW---------IFKEKIIANISSGLANMNKRQYI 202
+++ E E+VTL C T + W +F +I S N +Y
Sbjct: 11 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVF---LIRRNSFDEQNEISGRYS 67
Query: 203 IKTI--NSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S N TI A + DS +Y C
Sbjct: 68 WNFQKSTSSFNFTITASQVVDSAVYFCALSGFYN 101
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 37.1 bits (87), Expect = 0.006
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 56 NFT-TIPEQLDVG-----TQVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPSHI 106
+ IP+ G + +S N L TF L NL +DLS N ++ S +
Sbjct: 160 RISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216
Query: 107 LDSILELRELKLSGN 121
S +++ L+ N
Sbjct: 217 FGSDKNTQKIHLAKN 231
Score = 36.4 bits (85), Expect = 0.011
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 59 TIPEQLD--VGTQVLDLSDNFLDRY--TFRKLINLVELDLSYNQIQ-FVPSHILDSILEL 113
TQ + L+ N L NL LDL N+I +P L + L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFL 270
Query: 114 RELKLSGN 121
L +S N
Sbjct: 271 HSLNVSFN 278
Score = 33.7 bits (78), Expect = 0.089
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 56 NFT-TIPEQLDVGT----QVLDLSDNFLDRYT------FRKLINLVELDLSYNQIQFVPS 104
N + IP+ L LD S N L + L NLV + N+I
Sbjct: 112 NVSGAIPDFL--SQIKTLVTLDFSYNAL---SGTLPPSISSLPNLVGITFDGNRIS---G 163
Query: 105 HILDSILELRELK----LSGN 121
I DS +L +S N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRN 184
Score = 32.9 bits (76), Expect = 0.14
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 69 QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQ-FVPSHILDSILE-LRELKLSGNP 122
LDL +N + +L L L++S+N + +P L+ + N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNK 302
Score = 32.1 bits (74), Expect = 0.22
Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 29/107 (27%)
Query: 39 CECKWKGGKETVLCKAK--------------NFT---TIPEQLD--VGTQVLDLSD-NFL 78
C W G VLC N IP L L + N L
Sbjct: 34 CNRTWLG----VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 79 DR---YTFRKLINLVELDLSYNQIQ-FVPSHILDSILELRELKLSGN 121
KL L L +++ + +P + I L L S N
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYN 135
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 35.3 bits (82), Expect = 0.006
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE------KIIANISSGLAN--MNKRQYIIK 204
++ E + L C T + + ++W F++ + ++SG K + +
Sbjct: 9 SALSLHEGTDSALRCNFTTT-MRSVQW-FRQNSRGSLISLFYLASGTKENGRLKSAFDSE 66
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S L I + DSG Y C A+ +G
Sbjct: 67 R-ARYSTLHIRDAQLEDSGTYFCAAEASSG 95
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 35.3 bits (81), Expect = 0.007
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 16/101 (15%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK---------IIANISSGLAN-----MNK 198
+ AE + V L C GS W+F+ ++ SS +N
Sbjct: 12 KKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNS 71
Query: 199 RQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ ++ + LT+ + + G Y C + + F
Sbjct: 72 SKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 112
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 36.3 bits (84), Expect = 0.007
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 17/97 (17%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLAN 195
L P++ P +VTL C+ + ++ KE G
Sbjct: 86 LVATGVFAKPSLS-AQPGPAVSSGGDVTLQCQ---TRYGFDQFALYKE--------GDPA 133
Query: 196 MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232
K ++ I+ VT + SG Y C + +
Sbjct: 134 PYKNPERWYR----ASFPIITVTAAHSGTYRCYSFSS 166
Score = 35.9 bits (83), Expect = 0.010
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 26/88 (29%)
Query: 153 PDVTAE------ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
P + A + VTL C+ G P + + K
Sbjct: 9 PSLQALPSSLVPLEKPVTLRCQ--GPPGVDLYRLEKLSS------------------SRY 48
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
+ L I A+ S +G Y C +NG+
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSL 76
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.0 bits (86), Expect = 0.007
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 69 QVLDLSDNFLDRYTFRKLI----NLVELDLSYNQIQFVPSHILDSILE-----LRELKLS 119
++L+ LD R L+ +L L N + L +L + L+LS
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163
Query: 120 GNPIQ 124
NP+
Sbjct: 164 NNPLT 168
Score = 32.8 bits (75), Expect = 0.16
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 88 NLVELDLSYNQIQFVPSHILDSILE----LRELKLSGNPIQ 124
L EL+++YN + L L L L N +
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252
Score = 32.0 bits (73), Expect = 0.31
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 12/65 (18%)
Query: 71 LDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFVPSHILDSILE----LRELKL 118
L L N L + L + L LS N + +L L + L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 119 SGNPI 123
+
Sbjct: 191 LHTGL 195
Score = 30.5 bits (69), Expect = 0.78
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 71 LDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFVP-SHILDSILELRELKLSGN 121
L+L+ + + L E++L+ Q+ +L L R+L L N
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136
Query: 122 PIQ 124
+
Sbjct: 137 SLG 139
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 76 NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSIL----ELRELKLSGNPI 123
N DR ++ + L+ DL ++ + +L E+R L
Sbjct: 298 NSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 14/84 (16%)
Query: 69 QVLDLSDNFLDRYTFRKL-------INLVELDLSYNQIQFVPSHIL-------DSILELR 114
Q L+++ N L +L L L +N++ +L + +
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273
Query: 115 ELKLSGNPIQKITHEAFINVPKLN 138
G + + V +
Sbjct: 274 VSLTEGTAVSEYWSVILSEVQRNL 297
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 36.2 bits (83), Expect = 0.009
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 16/104 (15%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS-PVPK--IKWIFKEKIIANISSGLANMNKRQY 201
+ P EN TLSCR G+ P + + + L +
Sbjct: 91 RVELMP--LPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQE-------LIRRSFAGE 141
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA----GEVFTNIS 241
+ ++ T++A ++CRA+ +F N S
Sbjct: 142 PPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSS 185
Score = 31.2 bits (70), Expect = 0.36
Identities = 10/112 (8%), Positives = 24/112 (21%), Gaps = 22/112 (19%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
E ++ L+C + + L ++ +
Sbjct: 5 ADLQPRVAFVERGGSLWLNCSTNCPRPERGGL----------ETSLRRNGTQRGLRWLAR 54
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
L ++ C + + + + PD V L
Sbjct: 55 QLVDIR------EPETQPVCFFRCARRTLQARGLIRTFQR------PDRVEL 94
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 34.7 bits (80), Expect = 0.009
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS--NLTIVAVT 218
+VT CR G + + +E + N + + + S S I +V+
Sbjct: 24 SHVTFVCR--GPVGVQTFRLERE--------SRSTYNDTEDVSQASPSESEARFRIDSVS 73
Query: 219 MSDSGIYTCRAKNGAG 234
++G Y C
Sbjct: 74 EGNAGPYRCIYYKPPK 89
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 36.1 bits (83), Expect = 0.009
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR-QYIIK 204
++ +E EN+T+ C ++ S ++W ++++ ++ ++ G KR +
Sbjct: 9 QFLSIQEGENLTVYCNSS-SVFSSLQW-YRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG 66
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S+L I A D+G+Y C G
Sbjct: 67 DARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 36.2 bits (83), Expect = 0.009
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFK---EKIIANISSGLANMNKRQYIIKTIN-- 207
++ E L C T + + ++W F+ + N+ + + + +
Sbjct: 11 SALSLHEGTGSALRCNFTTT-MRAVQW-FRKNSRGSLINLFYLASGTKENGRLKSAFDSK 68
Query: 208 -SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
S L I + DSG Y C A+ + ++V + PDP
Sbjct: 69 ERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAV 120
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 36.3 bits (84), Expect = 0.011
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYII-- 203
+T E E L+C S W +++ +I+ +S + R I
Sbjct: 135 QSLTVWEGETAILNCSYENSAFDYFPW-YQQFPGEGPALLISILSVSDKKEDGRFTIFFN 193
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
K LS L I DS Y C A +
Sbjct: 194 KREKKLS-LHIADSQPGDSATYFCAAIDTNAYKVI 227
Score = 32.4 bits (74), Expect = 0.15
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 155 VTAEENENVTLSCRATGS----------PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
A VTLSC T + ++ I S Y
Sbjct: 10 KVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIH---YSYGAGSTEKGDIPDGYKAS 66
Query: 205 TIN-SLSNLTIVAVTMSDSGIYTC 227
+ +L + T S + +Y C
Sbjct: 67 RPSQENFSLILELATPSQTSVYFC 90
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 34.5 bits (79), Expect = 0.013
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKRQYIIK--TI 206
V ++++ C K+ + I + G A + I+
Sbjct: 6 VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVE-TKGSAGKRNGRVSIRDSPA 64
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
N +T+ +T D+G Y C + F + + V
Sbjct: 65 NLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV 102
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 34.3 bits (79), Expect = 0.014
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
VT+ C S + + + + G M K KT + I V +
Sbjct: 24 TFVTVVCS--YSDKHDLYNMVRLE-----KDGSTFMEKSTEPYKTEDEFE---IGPVNET 73
Query: 221 DSGIYTCRAKNGAGEVFTNIS----LNVIKVETAVAQPDPV 257
+G Y+C G ++ S L VIK E + P P
Sbjct: 74 ITGHYSCIYSKGIT--WSERSKTLELKVIK-ENVIQTPAPG 111
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 35.2 bits (81), Expect = 0.016
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
Query: 143 ACSPNIRPITPDVTAEE---NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
AC P + P E+ L+C TG ++ S + +R
Sbjct: 1 ACHPRLSLHRP--ALEDLLLGSEANLTCTLTGLRDASGVTFTWTP--SSGKSAVQGPPER 56
Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
S S L A + +TC A
Sbjct: 57 DLCGCYSVS-SVLPGCAEPWNHGKTFTCTAAYPES 90
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 34.4 bits (79), Expect = 0.018
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 17/125 (13%)
Query: 153 PDVTAEENENVTLSC--RATGSPVPKIKWIFKEKIIANISSGLAN---MNKRQYIIKTIN 207
T E E++T++C R + W ++ K G N ++ ++T+N
Sbjct: 8 RTATKETGESLTINCVLRDASFELKDTGW-YRTK------LGSTNEQSISIGGRYVETVN 60
Query: 208 SLSN---LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
S L I + + DSG Y C+A + I A
Sbjct: 61 KGSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGSNKGAIIGLMVGGVVIGGEKGAG-- 118
Query: 265 TVVTI 269
T +T+
Sbjct: 119 TALTV 123
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.0 bits (83), Expect = 0.018
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIV 215
+ VT+SC T S + W + K++ + + ++ + ++L I
Sbjct: 16 QRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAIS 75
Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVAS 262
+ D Y C + N + + + + V V L
Sbjct: 76 GLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPP 122
Score = 30.6 bits (69), Expect = 1.0
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 18/127 (14%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATG---SPVPKIKWIFKEKIIANISSGLANMNKR 199
+P + P + TL C + V + W + + + +G+ +
Sbjct: 112 KANPTVTLFPPSSEELQANKATLVCLISDFYPGAV-TVAW---KADGSPVKAGV----ET 163
Query: 200 QYIIKTINSL----SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
K N+ S L++ Y+C+ + V ++ T +
Sbjct: 164 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSAST---KGP 220
Query: 256 PVYLVAS 262
V+ +A
Sbjct: 221 SVFPLAP 227
Score = 29.0 bits (65), Expect = 2.9
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 14/139 (10%)
Query: 127 THEAFINVPKLNLEDFACSPNIRPITPDVTAE--ENENVTLSCRATG----SPVPKIKWI 180
H+ +E + P++ P + ++C P K W
Sbjct: 300 NHKPSNTKVDKRVEPLSL-PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWY 358
Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
+ N + T +S LT++ D Y C+ N A
Sbjct: 359 VDGVQVHNAKTKPREQQYNS----TYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEK 414
Query: 241 SLNVIKVETAVAQPDPVYL 259
+++ K + + VY
Sbjct: 415 TISKAKGQP---REPQVYT 430
Score = 27.5 bits (61), Expect = 9.2
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 301 KCESNHQQSKPLTVNKMDRPPPVPSAVPAVPLVPPHPPPRNEYSS 345
C+ H+ S + P SA P V P P S
Sbjct: 194 SCQVTHEGSTV----EKTVAPTECSASTKGPSVFPLAPSSKSTSG 234
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 34.0 bits (78), Expect = 0.021
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 153 PDVTAEENENVTLSCRATGSPV-PKIKWIFK-------EKIIANISSGLANMNKRQYIIK 204
+T E N T +C + + W + EK A + + ++ I
Sbjct: 17 AWLTVSEGANATFTCSLSNWSEDLMLNW-NRLSPSNQTEKQAAFSNGLSQPVQDARFQII 75
Query: 205 TINSL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV-IKVETAVAQPDPVY 258
+ + ++ I+ +DSGIY C A + + S + V + + Y
Sbjct: 76 QLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILETSTRY 132
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 35.5 bits (82), Expect = 0.021
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 153 PDVTAEENENVTLSCRATGS----------PVPKIKWIFKEKIIANISSGLANMNKRQYI 202
+ ENVTLSCR T S +++ I+ + + ++
Sbjct: 145 RNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIY--YSYGAGNLQIGDVPDGYKA 202
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+T LT+ + + S + +Y C + + G+++
Sbjct: 203 TRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLY 237
Score = 32.8 bits (75), Expect = 0.14
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFK------EKIIANISSGLANMNKRQYIIKTINS 208
VT E ++ L C+ + S P + W + + ++ S + + S
Sbjct: 13 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS 72
Query: 209 LSN--LTIVAVTMSDSGIYTC 227
S+ L +V SDS +Y C
Sbjct: 73 DSSFHLRKASVHRSDSAVYFC 93
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 33.7 bits (77), Expect = 0.023
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 155 VTAEENENVTLSCRATGSPVP------KIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
+ A ++ + C V + + ++++ A +R ++
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGE-VFTNISLNV 244
L + +V + D+G Y C G + +SLN+
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 34.6 bits (79), Expect = 0.026
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFK-------EKIIANISSGLANMNKR-QYIIK 204
++ +E EN T++C S + ++W ++ +I S+ + R + +
Sbjct: 9 QALSIQEGENATMNCSYKTS-INNLQW-YRQNSGRGLVHLILIRSNEREKHSGRLRVTLD 66
Query: 205 TINSLSNLTIVAVTMSDSGIYTC 227
T S+L I A +D+ Y C
Sbjct: 67 TSKKSSSLLITASRAADTASYFC 89
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.7 bits (75), Expect = 0.041
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
VT+ C S + + + + G M K KT + I V +
Sbjct: 24 TFVTVVCS--YSDKHDLYNMVRLE-----KDGSTFMEKSTEPYKTEDEFE---IGPVNET 73
Query: 221 DSGIYTCRAKNGAG 234
+G Y+C G
Sbjct: 74 ITGHYSCIYSKGIT 87
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 32.7 bits (75), Expect = 0.050
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 161 ENVTLSCRATGS-PVPKIKWIFKE----KIIANISSGLANMNKRQYIIKTINSLSN---- 211
E+ TL C T PV I W ++I N G R + + +N
Sbjct: 19 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFP---RVTTVSELTKRNNLDFS 75
Query: 212 LTIVAVTMSDSGIYTC 227
++I +T +D+G Y C
Sbjct: 76 ISISNITPADAGTYYC 91
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 33.4 bits (77), Expect = 0.086
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 161 ENVTLSCRATGSP-VPKIKWI--FKEK-------IIANISSGLANMNKRQYIIKTINSLS 210
+ T+SCRA+ + ++ +++K +I S+ + + R + +
Sbjct: 149 QRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFT 208
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVF 237
LTI V D Y C+ N F
Sbjct: 209 -LTINPVEADDVATYFCQRSNEVPWTF 234
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 31.9 bits (72), Expect = 0.099
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWI--FKEK---------IIANISSGLANMNKRQY 201
V A + + C + S + ++ + + ++
Sbjct: 7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFC 66
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCR 228
S NLTI + D+G+Y C+
Sbjct: 67 SGTFNESRVNLTIQGLRAVDTGLYLCK 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.13
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 66/200 (33%)
Query: 68 TQVLDLSDNFLDRYTFRKL----------INLVELDLS---YNQIQFVPSHILD-----S 109
T +++ S N L+ +RK+ ++ + LS ++ I+ +++ S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 110 ILELRE-----------LKLSGNPIQKIT-HEAFINVPKLNLEDFACSPNIRPITPD--- 154
++E + L+L + H + ++ N+ S ++ P D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYF 473
Query: 155 --------VTAEENENVTLSCRATGSPVPKI----KWIFKEKIIA-----NISSGLANM- 196
E E +TL + +++ ++KI N S + N
Sbjct: 474 YSHIGHHLKNIEHPERMTL--------FRMVFLDFRFL-EQKIRHDSTAWNASGSILNTL 524
Query: 197 ----NKRQYIIKTINSLSNL 212
+ YI L
Sbjct: 525 QQLKFYKPYICDNDPKYERL 544
Score = 31.0 bits (69), Expect = 0.85
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 42/108 (38%)
Query: 72 DLSDNFLDRY-------------------TFRKLINLVELDLSY--NQIQFV------PS 104
DL +LD+Y FR + LD + +I+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASG 518
Query: 105 HILDSILELRELKLSGNPIQKI--THEAFINVPKLNLEDF--ACSPNI 148
IL+++ +L+ K I +E +N + DF N+
Sbjct: 519 SILNTLQQLKFYK---PYICDNDPKYERLVN----AILDFLPKIEENL 559
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 32.7 bits (74), Expect = 0.13
Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 4/102 (3%)
Query: 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM 219
+ + L C P + + + + + + T ++ S + +
Sbjct: 28 SLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHF-NGTYSASSAVPVSTQDW 86
Query: 220 SDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
+TC ++ + + S+ T +Y A
Sbjct: 87 LSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPL---IYPFA 125
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 33.0 bits (74), Expect = 0.14
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 14/108 (12%)
Query: 149 RPITPDVTAEENENVTLSCRAT-----GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ +T SC P P+I W ++ RQ +
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQP---------GGRQQRL 54
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
S +T+ + + + + + ++ + L
Sbjct: 55 SDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIP 102
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 31.2 bits (71), Expect = 0.15
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPV-PKIKWIFK-------EKIIANISSGLANMNKRQYIIK 204
+T E N T +C + + W + EK A + + ++ I
Sbjct: 7 AWLTVSEGANATFTCSLSNWSEDLMLNW-NRLSPSNQTEKQAAFSNGLSQPVQDARFQII 65
Query: 205 TINS--LSNLTIVAVTMSDSGIYTCRA 229
+ + ++ I+ +DSGIY C A
Sbjct: 66 QLPNRHDFHMNILDTRRNDSGIYLCGA 92
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 32.6 bits (74), Expect = 0.16
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 148 IRPITPDVTAEENENVTLSCRATGSPVP----KIKWIFKEKIIANISSGLANMNKRQYII 203
I P ++C + W F + + + + ++Q
Sbjct: 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSW-FIDD--VEVHTAQTHAPEKQSN- 75
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
T+ S+S L IV + + C+ +GA S++ + + VY
Sbjct: 76 STLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTP---RGPQVYT 128
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 32.5 bits (74), Expect = 0.17
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKRQYIIKTINSLSNLTI 214
+V+LSCRA+ S + +++K ++ +S + ++ + L+I
Sbjct: 17 NSVSLSCRASQS-IGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSI 75
Query: 215 VAVTMSDSGIYTCRAKNGAGEVF 237
+V D G+Y C+ N F
Sbjct: 76 NSVETEDFGMYFCQQSNSXPYTF 98
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 31.9 bits (73), Expect = 0.22
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSNLT 213
++V+LSCRA+ S + W +++K +I S + + R + + L+
Sbjct: 153 DSVSLSCRASQSISNNLHW-YRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFT-LS 210
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVF 237
I +V D GIY C+ N F
Sbjct: 211 INSVETEDFGIYFCQQSNSWPHTF 234
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 32.2 bits (72), Expect = 0.26
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 69 QVLDLSDNFLDRYTFRKLI------NLVELDLSYNQI-----QFVPSHILDSILELRELK 117
+ L + D + L +D+S + + + H +D I L+ +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFIN 313
Query: 118 LSGNPI 123
+ N +
Sbjct: 314 MKYNYL 319
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 31.6 bits (71), Expect = 0.28
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFK---EKIIANISSGLANMNKRQYIIKTIN-- 207
P ++ E + L C + + + ++W F+ + + + + T N
Sbjct: 9 PALSLYEGADSGLRCNFSTT-MKSVQW-FQQNHRGRLITLFYLAQGTKENGRLKSTFNSK 66
Query: 208 -SLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
S L I + DSG Y C A++G
Sbjct: 67 ERYSTLHIKDAQLEDSGTYFCAAEDGGSG 95
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 30.9 bits (69), Expect = 0.30
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWI--FKEK---------IIANISSGLANMNKRQY 201
V A + C + ++ + + L ++
Sbjct: 9 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSIC 68
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231
+ + NLTI + D+G+Y C+ +
Sbjct: 69 TGTSSGNQVNLTIQGLRAMDTGLYICKVEL 98
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 31.6 bits (72), Expect = 0.38
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 161 ENVTLSCRATGSPVPK------IKWIFKEK-------IIANISSGLANMNKRQYIIKTIN 207
E VT++C+++ + + + W +++K +I+ + + + R +
Sbjct: 21 EKVTMTCKSSQTLLYSNNQKNYLAW-YQQKPGQSPKLLISWAFTRKSGVPDR-FTGSGSG 78
Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ LTI +V D +Y C+ + F
Sbjct: 79 TDFTLTIGSVKAEDLAVYYCQQYSNYPWTF 108
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 31.8 bits (72), Expect = 0.38
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 133 NVPKLNLEDFACSPNIRPITP--DVTAEENENVTLSCRATG-SPVP---KIKWIFKEKII 186
P + P++ P T + ++C S K W +
Sbjct: 235 TCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV 294
Query: 187 ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
N + T +S LT++ + Y C+ N A +++ K
Sbjct: 295 HNAKTKPREEQYN----STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK 350
Query: 247 VET 249
+
Sbjct: 351 GQP 353
Score = 27.5 bits (61), Expect = 8.9
Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 18/137 (13%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVPK-IKWIFKEKIIANISSGLANMNKRQ-- 200
P++ P+ P + L C P P + W ++SG+
Sbjct: 132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG-----ALTSGVHTFPAVLQS 186
Query: 201 ---YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
Y SLS++ V + + Y C + + + P
Sbjct: 187 SGLY------SLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCP 240
Query: 258 YLVASLTTVVTIILTAC 274
V +
Sbjct: 241 APELLGGPSVFLFPPKP 257
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.0 bits (70), Expect = 0.43
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Query: 148 IRPITPDVTAEENENVTLSCRATG-SPVP---KIKWIFKEKIIANISSGLANMNKRQYII 203
I P P ++C S + W F + + + + Q+
Sbjct: 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSW-FVDD--VEVHTAQTKPREEQFN- 61
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
T S+S L I+ + + CR + A +++ K
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPK 108
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 31.1 bits (71), Expect = 0.45
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKTINSLSNLT 213
+ VT+SCRA+ + W +++K +I S + + R + + +LT
Sbjct: 20 DRVTISCRASQDIRNYLNW-YQQKPDGTVKLLIYYTSRLQSGVPSR-FSGSGSGTDYSLT 77
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVF 237
I + D G Y C+ N F
Sbjct: 78 ISNLEQEDIGTYFCQQGNTLPWTF 101
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 31.2 bits (70), Expect = 0.56
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 144 CS-----PNIRPITP--DVTAEENENVTLSCRATG-SPVP-KIKWIFK-EKIIANISSGL 193
CS P ++ + D + L C +G +P +I W+ + + ++S+
Sbjct: 1 CSRDFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAS 60
Query: 194 ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
++ S LT+ YTC+
Sbjct: 61 TTQEGELA-----STQSELTLSQKHWLSDRTYTCQVTYQGHTF 98
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 29.5 bits (67), Expect = 0.57
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 14/77 (18%)
Query: 161 ENVTLSCRATGS-PVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSN--- 211
++ L+C T PV IKW ++ +I + + + +N
Sbjct: 23 DSTVLNCTLTSLLPVGPIKW-YRGVGQSRLLIYSFTGEHFPRVTN---VSDATKRNNMDF 78
Query: 212 -LTIVAVTMSDSGIYTC 227
+ I VT D+G Y C
Sbjct: 79 SIRISNVTPEDAGTYYC 95
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 31.0 bits (70), Expect = 0.58
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 11/128 (8%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVP---KIKWIFKEKIIANISSGLANMNKRQ 200
S I P P T ++C S + W + + +
Sbjct: 230 SVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEV----HTAQTQPREE 285
Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
T +S L I+ + + CR + A + I + VY +
Sbjct: 286 QFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKT---ISKTKGKPRAPQVYTI 342
Query: 261 ASLTTVVT 268
+
Sbjct: 343 PPPKEQMA 350
Score = 28.0 bits (62), Expect = 5.8
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 17/96 (17%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGLANMNKRQYI 202
P++ P+ P A+ N VTL C G P P + W +SG + +
Sbjct: 119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW----------NSGSLSSGVHTFP 168
Query: 203 IKTINSL----SNLTIVAVTMSDSGIYTCRAKNGAG 234
+ L S++T+ + TC + A
Sbjct: 169 AVLQSDLYTLSSSVTVPSSPRPSET-VTCNVAHPAS 203
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 30.8 bits (70), Expect = 0.63
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 161 ENVTLSCRATGSPV---PKIKWI--FKEK-------IIANISSGLANMNKRQYIIKTINS 208
E VT+SC+++ S + ++ +++K +I S+ + + R +
Sbjct: 175 EKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTD 234
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ LTI +V D +Y C+ F
Sbjct: 235 FT-LTISSVQAEDLAVYYCKQSYYHMYTF 262
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 30.6 bits (69), Expect = 0.67
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMN----KRQYIIKTINSLSN 211
+ V L C S P + W ++ + + + S Y+ + +
Sbjct: 17 QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTE 75
Query: 212 LTIVAVTMSDSGIYTC 227
L + MS C
Sbjct: 76 LRLQVANMSQGRTLYC 91
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 30.2 bits (68), Expect = 0.80
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMN----KRQYII-KTINS 208
+V + CR+ + W +++ + + A K +++I +
Sbjct: 17 TSVKIECRSLDFQATTMFW-YRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLT 75
Query: 209 LSNLTIVAVTMSDSGIYTC 227
LS LT+ + DS Y C
Sbjct: 76 LSTLTVTSAHPEDSSFYIC 94
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 30.7 bits (68), Expect = 0.81
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVP--KIKWIFKEKIIANISSGLANMNKRQY 201
++ P T A L C + P +++W +
Sbjct: 293 KVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSAL 352
Query: 202 IIK---TINSLSNLTIVAVTMSDSG-IYTCR 228
+++ +L VT G Y CR
Sbjct: 353 RHHSDGSVSLSGHLQPPPVTTEQHGARYACR 383
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 29.5 bits (67), Expect = 0.82
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 161 ENVTLSCRATGS-PVPKIKWIFKE----KIIANISSGLANMNKRQYIIKTINSLSN---- 211
E+ TL C T PV I W ++I N G R + + +N
Sbjct: 24 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFP---RVTTVSELTKRNNLDFS 80
Query: 212 LTIVAVTMSDSGIYTC 227
++I +T +D+G Y C
Sbjct: 81 ISISNITPADAGTYYC 96
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 28.9 bits (64), Expect = 0.83
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
I + E + + CR T P I K+ + + +
Sbjct: 6 EMYSEIPEIIHMTEGRELVIPCRVT---SPNITVTLKKFPLDTLIPDGKRI--------I 54
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
+S I T + G+ TC A G ++
Sbjct: 55 WDSRKGFIISNATYKEIGLLTCEATVN-GHLYK 86
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 30.4 bits (69), Expect = 0.85
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 161 ENVTLSCRATGSPVPKIK--WI--FKEK-------IIANISSGLANMNKRQYIIKTINSL 209
+ ++SCR++ S V ++ + +K +I +S+ + + R +
Sbjct: 137 DQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDF 196
Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ L I V D G+Y C + F
Sbjct: 197 T-LKISRVEAEDLGVYYCFQGSHVPYTF 223
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 30.2 bits (68), Expect = 0.86
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 14/86 (16%)
Query: 153 PDVTAEENENVTLSCRATGS-----------PVPKIKWIFKEKIIANISSGLANMNKRQY 201
+ ++L C G+ ++ +F I ISS +
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQ---NLS 65
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTC 227
+ + L+ + +SDSG Y C
Sbjct: 66 ASRPQDRQFILSSKKLLLSDSGFYLC 91
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 30.5 bits (67), Expect = 0.87
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 21/90 (23%)
Query: 145 SPNIRPITPDV-TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
++ + D E V L+C I W ++ + SG
Sbjct: 5 KKDVYVVELDWYPDAPGEMVVLTCD--TPEEDGITW-TLDQSSEVLGSG----------- 50
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233
LTI D+G YTC
Sbjct: 51 ------KTLTIQVKEFGDAGQYTCHKGGEV 74
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 30.2 bits (68), Expect = 0.90
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 161 ENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMN----KRQYII-KTINS 208
+V + CR+ + W +++ + + A K +++I +
Sbjct: 40 TSVKIECRSLDFQATTMFW-YRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLT 98
Query: 209 LSNLTIVAVTMSDSGIYTC 227
LS LT+ + DS Y C
Sbjct: 99 LSTLTVTSAHPEDSSFYIC 117
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 30.1 bits (67), Expect = 0.91
Identities = 10/113 (8%), Positives = 28/113 (24%), Gaps = 16/113 (14%)
Query: 136 KLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGS-PVPK--IKWIFKEKIIANISSG 192
+++ + ++ T+ CR P+ + + + +
Sbjct: 81 NVSVYQPPRQVILTLQPT--LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF- 137
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA----GEVFTNIS 241
+ + + A ++C A G +F S
Sbjct: 138 ------GKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 184
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.9 bits (67), Expect = 0.93
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 148 IRPITPDVTAEENENVTLSCRATGS----PVPKIKWIFKEKIIANISSGLANMNKRQYII 203
+ P P T + ++C P K W + + + + + QY
Sbjct: 6 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNW-YVDG--VEVHNAKTKPREEQYN- 61
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
T +S LT++ + Y C+ N A +++ K + Q VY
Sbjct: 62 STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ---VYT 114
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 30.4 bits (69), Expect = 0.93
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 161 ENVTLSCRATGSPVPKIKWIFK-------EKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ +T++C A+ + + W ++ + +I S+ + R + + LT
Sbjct: 17 DTITITCHASQNINLWLSW-YQQRPGNIPKLLIYRASNLHTGVPSR-FSGSGSATGFTLT 74
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVF 237
I ++ D Y C+ + F
Sbjct: 75 ISSLQPEDIATYYCQQGHSYPYTF 98
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 29.8 bits (67), Expect = 0.97
Identities = 4/48 (8%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA 130
+ +D + + I + ++ + + +++L I
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--YIEDGC 102
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 30.2 bits (67), Expect = 1.1
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
+ D ++T C + + + +I +++ IK
Sbjct: 198 DSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLI--------HLDGENVAIK 249
Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
+ N+++ A S + + N G V
Sbjct: 250 ----IRNISVSAS--SGTNVVFTTEDNIFGTVIF 277
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 29.6 bits (66), Expect = 1.7
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 15/121 (12%)
Query: 155 VTAEENENVTLSCRATGS----------PVPKIKWIFKEKIIANISSGLANMNKRQYII- 203
E+ + V L C +++ + + ++
Sbjct: 36 KVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDS--GLPNDRFFAV 93
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRA--KNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
+ S+S L I DS +Y C L V++ V P+
Sbjct: 94 RPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEP 153
Query: 262 S 262
S
Sbjct: 154 S 154
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.5 bits (66), Expect = 2.0
Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 23/144 (15%)
Query: 144 CSPNIRPITPDVT-AEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQY 201
C P + P + L+C TG + + + +
Sbjct: 245 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTF--------TWTPSSGKSAVQGP 296
Query: 202 IIKTINSL----SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
+ + S L A + +TC A + L ++ V
Sbjct: 297 PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE----SKTPLTATLSKSGNTFRPEV 352
Query: 258 YLVA----SLTTVVTIILTACFVV 277
+L+ L + LT C
Sbjct: 353 HLLPPPSEELALNELVTLT-CLAR 375
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 28.0 bits (62), Expect = 2.0
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 146 PNIRPITPDVTAEENENVTLSCR-----------ATGSPVPKIKWIFKEKIIANISSGLA 194
I +V E + V L G V + I I ++
Sbjct: 3 LTIESTPFNVA--EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 60
Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR 228
+ R+ I ++L I + +D+G YT
Sbjct: 61 AYSGRE----IIYPNASLLIQNIIQNDAGFYTLH 90
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFT 238
L+I + + DSG Y N G+V
Sbjct: 77 LSIKSAKLQDSGHYLLEITNTGGKVCN 103
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.8 bits (64), Expect = 2.2
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 19/124 (15%)
Query: 155 VTAEENENVTLSCRATGS----------PVPKIKWI--FKEKIIANISSGLANMNKRQYI 202
+ + VTL+C + +++++ F + S + + +
Sbjct: 12 QIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKD---QFSV 68
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS----LNVIKVETAVAQPDPVY 258
+ S L I + DS +Y C + L V++ V P+
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAV 128
Query: 259 LVAS 262
S
Sbjct: 129 FEPS 132
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.0 bits (65), Expect = 2.3
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGLANMNKRQYI 202
P + + P V+L+C G P ++W + N + ++
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD--- 298
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGA 233
+ S LT+ +++C + A
Sbjct: 299 -GSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 328
Score = 27.1 bits (60), Expect = 8.7
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 16/99 (16%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGLANMNKRQ 200
P++ P+ P + L C P P + W +SG
Sbjct: 118 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW----------NSGALTSGVHT 167
Query: 201 Y----IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
+ + SLS++ V + + Y C +
Sbjct: 168 FPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSN 206
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 2.6
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
+ + + S++ TI + DSG++ C AG V +++V
Sbjct: 372 HPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 28.8 bits (65), Expect = 2.7
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 161 ENVTLSCRATGS--------------PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
E VTL+C A+ S PK+ WI+ N++SG+ ++
Sbjct: 157 EKVTLTCSASSSVSSSHLYWYQQKPGSSPKL-WIYSTS---NLASGV----PARFSGSGS 208
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
+ +LTI ++ D+ Y C + F
Sbjct: 209 GTSYSLTISSMEAEDAASYFCHQWSSFPFTF 239
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 28.8 bits (64), Expect = 2.8
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 10/123 (8%)
Query: 133 NVPKLNLEDFACSP--NIRPITPDVTAEENENVTLSCRATGS----PVPKIKWIFKEKII 186
P + P + P P T + ++C P K W + +
Sbjct: 10 TCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNW-YVDG-- 66
Query: 187 ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
+ + + QY T +S LT++ + Y C+ N A +++ K
Sbjct: 67 VEVHNAKTKPREEQYN-STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK 125
Query: 247 VET 249
+
Sbjct: 126 GQP 128
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 28.7 bits (64), Expect = 3.8
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 13/125 (10%)
Query: 144 CSPNIRPITP--DVTAEENENVTLSCRATG-SPVP---KIKWIFKEKIIANISSGLANMN 197
P++ P + + ++C S +I W +
Sbjct: 237 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEV----HTAQTQT 292
Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
R+ T+ +S L I + C+ N +++ K + V
Sbjct: 293 HREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSV---RAPQV 349
Query: 258 YLVAS 262
Y++
Sbjct: 350 YVLPP 354
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 26.6 bits (58), Expect = 4.2
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 19/70 (27%)
Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
V L+C +KW + + + + +++ + + DS
Sbjct: 17 VELTCPL--DSDENLKWEKNGQELPQK-------HDKHLVLQDFSE----------VEDS 57
Query: 223 GIYTCRAKNG 232
G Y C
Sbjct: 58 GYYVCYTPAS 67
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 27.9 bits (62), Expect = 4.4
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 69 QVLDLSDNFLDRYTFRKLIN-------LVELDLSYNQIQFVP-SHILDSILE---LRELK 117
+ L++ + R LI L L++ N + + +L S L + E K
Sbjct: 73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK 132
Query: 118 LSGNPIQKITHEA 130
+ ++
Sbjct: 133 ADNQRQSVLGNQV 145
Score = 27.5 bits (61), Expect = 5.8
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 89 LVELDLSYNQIQFVPSHILDSILE----LRELKLSGNPI 123
+ + L+ I + L ++E LR L + N +
Sbjct: 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 26.7 bits (58), Expect = 5.9
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 156 TAEENENVTLSCRAT-GSPVPKIKWI-FKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
+ + L C + P + W + + + + I S L
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI-----SFFILH 76
Query: 214 IVAVTMSDSGIYTCRAKNGAGEV 236
V +D+G Y C A + +
Sbjct: 77 FEPVLPNDNGSYRCSANFQSNLI 99
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 27.7 bits (61), Expect = 6.7
Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 22/217 (10%)
Query: 144 CSPNIRPITPDVTAE-ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
+P++ PI +N V L+C TG + + S + Q
Sbjct: 133 KAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMG---TQSQPQRTFPEIQRR 189
Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVAS 262
+ S L+ G Y C ++ A + I + + A
Sbjct: 190 DSYYMTSSQLSTPLQQ-WRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAE 248
Query: 263 LTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKCESNHQQSKPLTVNKMDRPPP 322
+ A R E+K + + + P
Sbjct: 249 GSLAKATTAPAT----------------TRNTGRGGEEKKKEKEK-EEQEERETKTPECP 291
Query: 323 VPSAVPAVPLVPPHPPPRNEYSSVPLSDTTRGPEPRD 359
+ V L+ P + G + +D
Sbjct: 292 SHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKD 328
Score = 27.3 bits (60), Expect = 8.6
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 301 KCESNHQQSKPLTVNKMDRPPPVPSAVPAVPLVPPHPPPRNEYSSVPLSDTTRGPEPRD 359
C NH P + + P ++ L+ PP + L G P +
Sbjct: 377 TCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEA---ASWLLCEVSGFSPPN 432
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.8 bits (61), Expect = 6.7
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 317 MDRPPPVPSAVPAVPLVPPHPPPRNEYSSVPLSDTTRGPEP 357
M P ++ + L HPP + P P
Sbjct: 21 MVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 27.5 bits (61), Expect = 6.8
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 72 DLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE-------LRELKLSGNPIQ 124
+L + L R+ NLV LDLS + + + + L+ L LS
Sbjct: 208 NLQKSDL-STLVRRCPNLVHLDLSDS------VMLKNDCFQEFFQLNYLQHLSLSRCY-- 258
Query: 125 KITHEAFINVPKL-NLEDFACSPNIRPITPDVTAEENENVTLSCR 168
I E + + ++ L+ + T + E ++ ++C
Sbjct: 259 DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 303
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 27.2 bits (60), Expect = 8.0
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 8/94 (8%)
Query: 148 IRPITPDVTAEENENVTLSCRATG-SPVP---KIKWIFKEKIIANISSGLANMNKRQYII 203
I P + ++C S +I W F + + ++ Y
Sbjct: 14 IFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISW-FVNN--VEVHTAQTQTHREDYN- 69
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
TI +S L I + C+ N
Sbjct: 70 STIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSP 103
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 27.2 bits (60), Expect = 8.3
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 155 VTAEENENVTLSCRATGS----------PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
A VTLSC+ T + ++ I S+ ++ +
Sbjct: 9 KVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIH--YSYGAGSTEKGDIPDGYKASR 66
Query: 205 TINSLSNLTIVAVTMSDSGIYTCR 228
+L + T S + +Y C
Sbjct: 67 PSQEQFSLILELATPSQTSVYFCA 90
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain,
topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A
{Escherichia coli} PDB: 1x75_A* 3kua_A*
Length = 156
Score = 26.5 bits (59), Expect = 9.0
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 26/92 (28%)
Query: 39 CECKWKGGK-ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYN 97
W+ G +L +A + PE L+ V D Y L+
Sbjct: 70 VANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRD------GLYY-----------LTEQ 112
Query: 98 QIQFVPSHILDSILELRELKLSGNPIQKITHE 129
Q Q +IL+LR KL+G +K+ E
Sbjct: 113 QAQ--------AILDLRLQKLTGLEHEKLLDE 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,614,274
Number of extensions: 332986
Number of successful extensions: 3453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2095
Number of HSP's successfully gapped: 953
Length of query: 369
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 274
Effective length of database: 4,049,298
Effective search space: 1109507652
Effective search space used: 1109507652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)