BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12697
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTC|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|C Chain C, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|D Chain D, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|E Chain E, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|F Chain F, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|G Chain G, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|H Chain H, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|I Chain I, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|J Chain J, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|K Chain K, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTE|L Chain L, Structure Of The Tbl1 Tetramerisation Domain
Length = 90
Score = 146 bits (368), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/90 (77%), Positives = 80/90 (88%), Gaps = 2/90 (2%)
Query: 1 MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
M+ +SDEVNFLVYRYLQESGF HSA+TFGIESHISQSNI+G LVPPAAL+SI+QKGLQY
Sbjct: 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYV 60
Query: 61 EAEISVGENGQ--EQRPTESLSLIDAVLPD 88
EAEIS+ E+G + RP ESLSLIDAV+PD
Sbjct: 61 EAEISINEDGTVFDGRPIESLSLIDAVMPD 90
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 137/497 (27%), Positives = 233/497 (46%), Gaps = 60/497 (12%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T+ LW+ G+ L TLT H+ V+ VAFSPDG+ +AS S DK V +W+ R GQL+ + G
Sbjct: 39 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 96
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKA---TKLIGHESEVFICAWNPVKDF 236
+ + V ++ G S D ++++ L GH S V+ A++P
Sbjct: 97 HSSSVRGVAFSPDG---QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 153
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
+AS S D T ++W+ ++ + LQ + H S V + ++ +G +A
Sbjct: 154 IASASDDKTVKLWN------RNGQLLQTLTGHSSS-----------VWGVAFSPDGQTIA 196
Query: 297 TGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
+ S D ++W +G L TL H + + ++ G I SA DKT +W+ +GQ
Sbjct: 197 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 255
Query: 357 QQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
Q + HS+ V ++ + + AS S D+ + + + + +++ GH++ V + + P
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 314
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS-----------NP 464
G +AS SDD T+K+W+ + + + L H+ ++ + +SP G + N
Sbjct: 315 GQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373
Query: 465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 524
N L+ TL H + + ++ G I SA DKT +W+ +GQ Q + HS+
Sbjct: 374 NGQLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 428
Query: 525 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWN 583
V A DQ I DK VK + + GQL+ + G + + V ++
Sbjct: 429 VWGV--------AFSPDDQTI--ASASDDKTVKLW--NRNGQLLQTLTGHSSSVRGVAFS 476
Query: 584 SRGDKVGASASDGSVFK 600
G + ASASD K
Sbjct: 477 PDGQTI-ASASDDKTVK 492
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 227/480 (47%), Gaps = 51/480 (10%)
Query: 134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEVCWNSR 192
N L H+ V VAFSPDG+ +AS S DK V +W+ R GQL+ + G + ++ V ++
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 193 GTPPNPPESMEVDASIEIPQSKA---TKLIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
G S D ++++ L GH S V A++P +AS S D T ++W
Sbjct: 69 G---QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS 309
+ ++ + LQ + H S V + ++ +G +A+ S D ++W
Sbjct: 126 N------RNGQLLQTLTGHSSS-----------VWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
+G L TL H ++ + ++ G I SA DKT +W+ +GQ Q + HS+ V
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 227
Query: 370 DWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL 428
+ + + AS S D+ + + + + +++ GH++ VN + + P G +AS SDD T+
Sbjct: 228 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 429 KIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ-------HKG 481
K+W+ + + L H+ ++ + +SP G ++ + L + GQ H
Sbjct: 287 KLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST 541
++ + ++ G I SA DKT +W+ +GQ Q + HS+ V + + + ++
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGSVFK 600
D DK VK + + GQL+ + G + ++ V + S D+ ASASD K
Sbjct: 405 D----------DKTVKLW--NRNGQLLQTLTGHSSSVWGVAF-SPDDQTIASASDDKTVK 451
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/404 (27%), Positives = 191/404 (47%), Gaps = 45/404 (11%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T+ LW+ G+ L TLT H+ V VAFSPDG+ +AS S DK V +W+ R GQL+ + G
Sbjct: 203 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 260
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT---KLIGHESEVFICAWNPVKDF 236
+ + V + G S D ++++ L GH S V+ A++P
Sbjct: 261 HSSSVNGVAFRPDG---QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
+AS S D T ++W+ ++ + LQ + H S V + ++ +G +A
Sbjct: 318 IASASDDKTVKLWN------RNGQHLQTLTGHSSS-----------VWGVAFSPDGQTIA 360
Query: 297 TGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
+ S D ++W +G L TL H + + ++ G I SA DKT +W+ +GQ
Sbjct: 361 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL 419
Query: 357 QQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
Q + HS+ V + + + AS S D+ + + + + +++ GH++ V + + P
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD 478
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS-----------NP 464
G +AS SDD T+K+W+ + + L H+ + + +SP G + N
Sbjct: 479 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Query: 465 NMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
N L+ TL H ++ + ++ G I SA DKT +W+
Sbjct: 538 NGQLL----QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 137/300 (45%), Gaps = 34/300 (11%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
++ L H + + ++ G I SA DKT +W+ +GQ Q + HS+ V +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 374 N-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
+ + AS S D+ + + + + +++ GH++ V + + P G +AS SDD T+K+W+
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETS-----------NPNMSLIFILKSTLGQHKG 481
+ + L H+ ++ + +SP G + N N L+ TL H
Sbjct: 127 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSS 181
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCST 541
++ + ++ G I SA DKT +W+ +GQ Q + HS+ V + + + ++
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGSVFK 600
D DK VK + + GQL+ + G + + V + G + ASASD K
Sbjct: 241 D----------DKTVKLW--NRNGQLLQTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVK 287
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 100 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 157 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 321 LENDKTIKLWKSD 333
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHT 301
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 271
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 166
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 167 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 189
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 190 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 234
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 295 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 328
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 28 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 83
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 84 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 129
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 102 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 159 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 323 LENDKTIKLWKSD 335
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHT 303
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 273
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 168
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 169 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 191
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 192 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 236
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 297 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 330
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 30 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 85
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 86 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 131
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 84 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 305 LENDKTIKLWKSD 317
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 150
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 151 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 173
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 174 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 218
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 279 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 312
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 12 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 95 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 152 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 316 LENDKTIKLWKSD 328
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHT 296
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 266
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 161
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 162 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 184
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 185 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 229
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 290 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 323
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 23 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 78
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 79 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 124
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 78 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 135 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 299 LENDKTIKLWKSD 311
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 144
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 145 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 167
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 168 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 212
Query: 301 DGYARIWT-SDGSLKSTLGQHKGPIFALKWN---KRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK + + N G +I+S D IW+ + +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 273 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 306
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 6 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 84 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 305 LENDKTIKLWKSD 317
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 150
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 151 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 173
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 174 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 218
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 279 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 312
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 12 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 83 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 140 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 304 LENDKTIKLWKSD 316
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHT 284
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 254
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 149
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 150 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 172
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 173 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 217
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 278 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 311
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 11 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 66
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 67 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 112
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 79 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 136 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 300 LENDKTIKLWKSD 312
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHT 280
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 250
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 145
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 146 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 168
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 169 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 213
Query: 301 DGYARIWT-SDGSLKSTLGQHKGPIFALKWN---KRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK + + N G +I+S D IW+ + +
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 274 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 307
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 7 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 108
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 78 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 135 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 299 LENDKTIKLWKSD 311
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHT 279
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 144
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 145 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 167
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 168 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 212
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 273 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 306
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 6 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 107
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 84 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 141 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 305 LENDKTIKLWKSD 317
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHT 285
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 136/332 (40%), Gaps = 38/332 (11%)
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
P PE ++ + L GH V ++P ++LAS S D +IW D
Sbjct: 2 PLGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSL 313
K + + H + ++ + W+++ + L + S D +IW S G
Sbjct: 62 -----KFEKTISGHKLG-----------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
TL H +F +N + N I+S D++ IWD +G+C + HS P V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 374 NTSF-ASCSTDQHIHVCKLHSDKPVKSFEGHTN-EVNAIKWDPQGLLLASCSDDMTLKIW 431
+ S S S D + S + +K+ N V+ +K+ P G + + + D TLK+W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 432 SLDKDNCVHDLQAHNKEIYTI---------KWSPTGPETSNPNMSLIFILKS-----TLG 477
K C+ H E Y I KW +G E N+ I+ L++ L
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQ 282
Query: 478 QHKGPIFALKWNKRGNYILSAGV--DKTTIIW 507
H + + + N I SA + DKT +W
Sbjct: 283 GHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 255
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 150
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 151 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 173
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 174 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 218
Query: 301 DGYARIWT-SDGSLKSTLGQHKGPIFALKWN---KRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK + + N G +I+S D IW+ + +
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 279 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 312
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 12 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 113
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 77 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 134 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 298 LENDKTIKLWKSD 310
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHT 278
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 248
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 143
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 144 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 166
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 167 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 211
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 272 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 305
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 456 PTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 515
P G PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E
Sbjct: 2 PLGSTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 57
Query: 516 QQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
+ S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 106
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 158/313 (50%), Gaps = 32/313 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 74 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-- 307
D+ K K L+ + H + V+++ +N +GS + + SYDG RIW
Sbjct: 131 DV-----KTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 367
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 368 DVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS +
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 424 --DDMTLKIWSLD 434
+D T+K+W D
Sbjct: 295 LENDKTIKLWKSD 307
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHT 275
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 245
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 140
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 141 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 163
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 164 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 208
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 269 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 302
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 2 PTPVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 58 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 103
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 81 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
D+ + + L+ +P++ D V+++ +N +GS + + SYDG RIW
Sbjct: 138 DV---------KTGMCLK--------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
+ +D T+K+W D
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 131/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+L TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF------------ILKSTLGQHKGPIF 484
C+ L+ H+ ++ ++P SN +S F + TL H P+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-D 542
A+ +N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ + K +K++ GH + + ++ TGG
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 100/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG + +
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT--- 147
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 148 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 170
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 171 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 215
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 276 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 309
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L+F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 9 PTPVKPNYALMF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LA+ S DK + IW A G+ + G GI +V W+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 79 -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
D+ K K L+ +P++ D V+++ +N +GS + + SYDG RIW
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
+ +D T+K+W D
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ ++ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 101/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 147
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 148 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 170
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 171 SYDGLCRIWDTASGQ---------CLKTLID------DDNPPVSFVKFSPNGKYILAATL 215
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 276 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 309
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
G E PN +L F TL H + ++K++ G ++ ++ DK IW A G+ E+
Sbjct: 8 GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 79 -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
D+ K K L+ +P++ D V+++ +N +GS + + SYDG RIW
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
+ +D T+K++ D
Sbjct: 301 ALENDKTIKLYKSD 314
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 103/285 (36%), Gaps = 67/285 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 147
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 148 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 170
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 171 SYDGLCRIWDTASGQ---------CLKTLID------DDNPPVSFVKFSPNGKYILAATL 215
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 401
Q+ H+ + S A T+ I L +DK +K ++
Sbjct: 276 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIKLYK 312
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
G E PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 8 GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 159/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 81 ---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
D+ + + L+ +P++ D V+++ +N +GS + + SYDG RIW
Sbjct: 138 DV---------KTGMCLK--------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
S LK+ + P+ +K++ G YIL+A +D +WD + G+C + ++ H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
+ +D T+K+W D
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+L TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D +WD + G+C + ++ H + + +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHT 282
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF------------ILKSTLGQHKGPIF 484
C+ L+ H+ ++ ++P SN +S F + TL H P+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-D 542
A+ +N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ + K +K++ GH + + ++ TGG
Sbjct: 217 NDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 100/282 (35%), Gaps = 67/282 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG + +
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT--- 147
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 148 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 170
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 171 SYDGLCRIWDTASGQ---------CLKTLIDD------DNPPVSFVKFSPNGKYILAATL 215
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK 398
Q+ H+ + S A T+ I L +DK +K
Sbjct: 276 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIK 309
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
P PN +L+F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 9 PTPVKPNYALMF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 519 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 160/314 (50%), Gaps = 34/314 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG-GIFEVCWNSRG 193
TL HT+ V SV FSP+G++LAS S DK + IW A G+ + G GI +V W+S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-- 78
Query: 194 TPPNPPESMEVDASIEIPQSKATK----LIGHESEVFICAWNPVKDFLASGSGDSTARIW 249
N S D +++I + K L GH + VF C +NP + + SGS D + RIW
Sbjct: 79 -DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWNNNGSFLATGSYDGYARIW- 307
D+ K K L+ +P++ D V+++ +N +GS + + SYDG RIW
Sbjct: 138 DV-----KTGKCLK------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 308 -TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPA 366
S LK+ + P+ +K++ G YIL+A +D T +WD + G+C + ++ H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Query: 367 LDVDWQSNTS----FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASC 422
+ + + S S D +++ L + + V+ +GHT+ V + P ++AS
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 423 S--DDMTLKIWSLD 434
+ +D T+K++ D
Sbjct: 301 ALENDKTIKLFKSD 314
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+LK TL H + ++K++ G ++ S+ DK IW A G+ E+ S H DV W
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 372 QSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
S+++ S S D+ + + + S K +K+ +GH+N V ++PQ L+ S S D +++I
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 431 WSLDKDNCVHDLQAHNKEIYTIKWSPTGP---ETSNPNMSLIF------ILKSTLGQHKG 481
W + C+ L AH+ + + ++ G +S + I+ LK+ +
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS----FA 537
P+ +K++ G YIL+A +D T +WD + G+C + ++ H + + +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 538 SCSTDQHIHVCKLHSDKPVKSFEGHT 563
S S D +++ L + + V+ +GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
AS S D+ I + + K K+ GH ++ + W LL S SDD TLKIW +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMS---LIFILKS-----TLGQHKGPIFALKW 488
C+ L+ H+ ++ ++P + + I+ +K+ TL H P+ A+ +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 489 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSFASCST-DQHIH 546
N+ G+ I+S+ D IWD ASGQC + P + V + N + +T D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 547 VCKLHSDKPVKSFEGHTTGQ--LVHSYKGTGG 576
+ K +K++ GH + + ++ TGG
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 103/285 (36%), Gaps = 67/285 (23%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV G+CL TL H+ V+ F+P + SGSFD+ V IW +TG+ + +
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--- 147
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L H V +N + S
Sbjct: 148 -------------------------------------LPAHSDPVSAVHFNRDGSLIVSS 170
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D RIWD L+ I N V+ + ++ NG ++ +
Sbjct: 171 SYDGLCRIWDTASGQ---------CLKTLID------DDNPPVSFVKFSPNGKYILAATL 215
Query: 301 DGYARIWT-SDGSLKSTLGQHKGP---IFALKWNKRGNYILSAGVDKTTIIWDAASGQCE 356
D ++W S G T HK IFA G +I+S D IW+ + +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 357 QQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE 401
Q+ H+ + S A T+ I L +DK +K F+
Sbjct: 276 QKLQGHTDVVI--------STACHPTENIIASAALENDKTIKLFK 312
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
G E PN +L F TL H + ++K++ G ++ S+ DK IW A G+ E+
Sbjct: 8 GSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 63
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHT 563
S H DV W S+++ S S D+ + + + S K +K+ +GH+
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
>pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain
pdb|2XTD|B Chain B, Structure Of The Tbl1 Tetramerisation Domain
Length = 71
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 65/70 (92%)
Query: 1 MTYSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNIDGALVPPAALLSIIQKGLQYT 60
M+ +SDEVNFLVYRYLQESGF HSA+TFGIESHISQSNI+G LVPPAAL+SI+QKGLQY
Sbjct: 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYV 60
Query: 61 EAEISVGENG 70
EAEIS+ E+G
Sbjct: 61 EAEISINEDG 70
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 20/261 (7%)
Query: 214 KATKLIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPK--ELQIV--LRH 268
K K I + WNP+ + LA G +S AR+ + ++ ++ K +L I+ LRH
Sbjct: 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH 96
Query: 269 CISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALK 328
+ + + VT L W+++G+ + TG +G R+W G+L + L H+ PI ++K
Sbjct: 97 PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVK 156
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF------------HSAP---ALDVDWQS 373
WNK G +I+S V+ TI+W+ SG Q F HS +DV+W
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 374 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
+ F I V ++ P GH ++ ++++ LL S SDD TL+IW
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276
Query: 434 DKDNCVHDLQAHNKEIYTIKW 454
N + H++ I + W
Sbjct: 277 GNGNSQNCFYGHSQSIVSASW 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 53/326 (16%)
Query: 51 SIIQKGLQYTEAEIS-VGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPST-- 107
SI+ G + + A ++ + E QE + L++I + F + +S +T N T
Sbjct: 59 SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA----SSGKTTNQVTCL 114
Query: 108 -----GPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDK 162
G +I G V L LW+ + G LN L H P+ SV ++ DG + S +
Sbjct: 115 AWSHDGNSIVTG--VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171
Query: 163 CVHIWSARTGQLVHSY--KGTGGI--------------FEVCW--NSRGTPPNPPESMEV 204
+W+ +G ++ + K TGG +V W + + P P ++ V
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231
Query: 205 DASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQI 264
E ++ KLIGH + + +N L S S D T RIW +
Sbjct: 232 YQITE--KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-------- 281
Query: 265 VLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKG-P 323
++C ++ + S W + ++ S DG R+W+ + L G P
Sbjct: 282 --QNCF------YGHSQSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLLALSIVDGVP 332
Query: 324 IFALKWNKRGNYILSAGVDKTTIIWD 349
IFA + ++ G A +D ++D
Sbjct: 333 IFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 423 SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGP 482
++ +T WS D ++ V ++ N E+ W+ TG L + L H+ P
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVE--NGELRL--WNKTGA------------LLNVLNFHRAP 151
Query: 483 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSF------------HSAP---ALD 527
I ++KWNK G +I+S V+ TI+W+ SG Q F HS +D
Sbjct: 152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211
Query: 528 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 562
V+W + F I V ++ P GH
Sbjct: 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH 246
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 24/241 (9%)
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+L ++ G+ + L W+ GN I++ + +W+ +G +FH AP + V W
Sbjct: 99 ALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKW 157
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKI 430
+ T S + + + S ++ FE ++I + S + + +
Sbjct: 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH-----SGDGSLGVDV 212
Query: 431 WSLDKDNCVHDLQAHNKEIYTI-KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN 489
+D D V +Y I + +PTG L H GPI L++N
Sbjct: 213 EWVDDDKFVIPGPKGAIFVYQITEKTPTGK----------------LIGHHGPISVLEFN 256
Query: 490 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCK 549
+LSA D T IW +G + F HS + W + SCS D + +
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWS 316
Query: 550 L 550
L
Sbjct: 317 L 317
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 29/283 (10%)
Query: 221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSN 280
H + + WN + S ++ +W++ T EL+ GG+ + +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK-------ETGGSSINAE 200
Query: 281 KDV------TSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGN 334
++W ++ F+ G ++ + L H GPI L++N
Sbjct: 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260
Query: 335 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSD 394
+LSA D T IW +G + F HS + W + SCS D + + L +
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 395 K--PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
+ +G I D Q +A +D V+DL+ N + ++
Sbjct: 321 TLLALSIVDGVPIFAGRISQDGQKYAVA-----------FMDGQVNVYDLKKLNSKSRSL 369
Query: 453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI 495
+ G NP + + Q IF L WN GN I
Sbjct: 370 YGNRDG--ILNP-LPIPLYASYQSSQDNDYIFDLSWNCAGNKI 409
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 470 FILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD 529
F L ++ G+ + L W+ GN I++ + +W+ +G +FH AP + V
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVK 156
Query: 530 WQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTTG 565
W + T S + + + S ++ FE TG
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 145/382 (37%), Gaps = 101/382 (26%)
Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
P PPE L GH S V ++PV + S S D+T ++WD
Sbjct: 96 PRPPEKY--------------ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY---- 137
Query: 256 KKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLK 314
+ + + L KG T+ V + ++++G LA+ S D ++W G
Sbjct: 138 --ETGDFERTL-----KGHTD-----SVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185
Query: 315 STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN 374
T+ H + ++ G++I+SA DKT +W+ +G C
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------------------- 226
Query: 375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLD 434
VK+F GH V ++ + G L+ASCS+D T+++W +
Sbjct: 227 ----------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 435 KDNCVHDLQAHNKEIYTIKWSP----------TGPETSNPNMSLIFILKS---------- 474
C +L+ H + I W+P TG ET F+L
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 475 --------TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPAL 526
TL H + + ++ G +ILS DKT +WD + +C + + H
Sbjct: 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 527 DVDWQSNTSF-ASCSTDQHIHV 547
+D+ + + S DQ + V
Sbjct: 385 SLDFHKTAPYVVTGSVDQTVKV 406
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 170/409 (41%), Gaps = 37/409 (9%)
Query: 6 DEVNFLVYRYLQESGFQHSAYTFGIESHISQS-----NIDGALVPPAALLSIIQKGLQYT 60
DE+N + YL+ +G++ + F E+ + + G L + +QK +
Sbjct: 9 DELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMEL 68
Query: 61 EAEI--------SVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQRTNNPSTGPAIT 112
E+++ S G GQ++ P E I + + ++ +P ++
Sbjct: 69 ESKLNEAKEEFTSGGPLGQKRDPKE---WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVS 125
Query: 113 NGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG 172
E+ T+ +WD E G+ TL HT+ V ++F GK LAS S D + +W +
Sbjct: 126 ASEDA---TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 173 QLVHSYKGTGGIFEVCWNSRGTPPNPPE--SMEVDASIEIPQSK----ATKLIGHESEVF 226
+ + + G +S PN S D +I++ + + GH V
Sbjct: 183 ECIRTMHGHDHNV----SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 227 ICAWNPVKDFLASGSGDSTARIWDM-TDSTKKDPKELQIVLRHCIS-KGGTEVPSNKDVT 284
+ N +AS S D T R+W + T K + +E + V+ CIS + S + T
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV-ECISWAPESSYSSISEAT 297
Query: 285 SLDWNNNGS---FLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
+ +G FL +GS D ++W S G TL H + + ++ G +ILS
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357
Query: 341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHV 388
DKT +WD + +C + + H +D+ + + S DQ + V
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 453 KWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 512
+W P PE K L H+ P+ + ++ + ++SA D T +WD +G
Sbjct: 93 EWIPRPPE------------KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG 140
Query: 513 QCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 562
E+ H+ D+ + S ASCS D I + + +++ GH
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH 191
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSAR 170
TL +WD + C+ TL H V S+ F ++ +GS D+ V +W R
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 147/357 (41%), Gaps = 79/357 (22%)
Query: 276 EVPSNKDVTS--LDWNNNGSFLATGSYDGYARIWTSDGS---LKSTLGQ-HKGPIFALKW 329
VP++ D L WN G+ LA+ D RIW ++G KS L + H+ + + W
Sbjct: 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 330 NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+ GNY+ SA D TT IW + N C
Sbjct: 70 SPCGNYLASASFDATTCIW-----------------------KKNQDDFEC--------- 97
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDN---CVHDLQAHN 446
V + EGH NEV ++ W P G LLA+CS D ++ +W +D+++ CV L +H
Sbjct: 98 -------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 447 KEIYTIKWSPT----GPETSNPNMSLI------FILKSTLGQHKGPIFALKWNKRGNYIL 496
+++ + W P+ + + + L ++ +TL H+ +++L ++ G +
Sbjct: 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 497 SAGVDKTTIIWD----------AASG-----QCEQQFS-FHSAPALDVDW-QSNTSFASC 539
S D+T IW A SG +C S FHS D+ W Q + A+
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270
Query: 540 STDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG-TGGIFEVCWNSRGDKVGASASD 595
D I V + P + T H ++ + + V WN + + AS SD
Sbjct: 271 CGDDAIRV---FQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 112/258 (43%), Gaps = 38/258 (14%)
Query: 222 ESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNK 281
+S + AWNP LAS GD RIW T+ D + + +S+G +
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIW----GTEGD----SWICKSVLSEG-----HQR 62
Query: 282 DVTSLDWNNNGSFLATGSYDGYARIWTS---DGSLKSTLGQHKGPIFALKWNKRGNYILS 338
V + W+ G++LA+ S+D IW D +TL H+ + ++ W GN + +
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 339 AGVDKTTIIWDAASG---QCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSD 394
DK+ +W+ +C + H+ V W S AS S D + + + D
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED 182
Query: 395 KPV--KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW---------------SLDKDN 437
V + EGH + V ++ +DP G LASCSDD T++IW S
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242
Query: 438 CVHDLQA-HNKEIYTIKW 454
C+ L H++ IY I W
Sbjct: 243 CICTLSGFHSRTIYDIAW 260
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 135/335 (40%), Gaps = 82/335 (24%)
Query: 132 CLNTLTR-HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWN 190
C + L+ H V VA+SP G +LAS SFD IW K FE
Sbjct: 52 CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW-----------KKNQDDFEC--- 97
Query: 191 SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWD 250
T L GHE+EV AW P + LA+ S D + +W+
Sbjct: 98 ------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 251 MTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS- 309
+ + +D E VL +DV + W+ + LA+ SYD +++
Sbjct: 134 VDE---EDEYECVSVLN----------SHTQDVKHVVWHPSQELLASASYDDTVKLYREE 180
Query: 310 --DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD----------AASG---- 353
D +TL H+ +++L ++ G + S D+T IW A SG
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240
Query: 354 -QCEQQFS-FHSAPALDVDW-QSNTSFASCSTDQHIHVCKL--HSDKPVKSF-------E 401
+C S FHS D+ W Q + A+ D I V + +SD +F +
Sbjct: 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300
Query: 402 GHTNEVNAIKWDPQGL-LLASCSDDMTLKIWSLDK 435
H+ +VN + W+P+ LLASCSDD + W +
Sbjct: 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/562 (21%), Positives = 209/562 (37%), Gaps = 120/562 (21%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL ++ E GE L + H + V AFS D ++A+ S DK V IW + TG+LVH+Y
Sbjct: 638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 697
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPVKDF 236
C + + + D +++ + + GH + V C ++P +
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 237 LASGSGDSTARIWDMTDSTKKD--------------PKELQIVLRHCI-SKGGTE--VPS 279
LAS S D T R+WD+ + ++ P++++++++ C S G + V +
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 280 NKDVTSLDWNNNGSF--LATGS-----------YDGYARI---------WTSDGSLK-ST 316
V D + +G + TG YD A I W D LK +
Sbjct: 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--------AASGQCEQQFSFHSAPAL- 367
H + + ++ G+ L+A D+T +W+ A + E F +
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 368 -----------------DVDWQSNTSFASCSTDQH------------IHVCKLHSDKPVK 398
+D+ + C H I + +L +++
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
S GH V I++ G L S S+D +++W+ + V LQAH + +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD------- 1049
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
F L + R +LS D T +W+ +G+ E+ F
Sbjct: 1050 -------------------------FRLLQDSR---LLSWSFDGTVKVWNVITGRIERDF 1081
Query: 519 SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI 577
+ H L S+ T F+S S D+ + P+ +GH G + S GI
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGI 1140
Query: 578 FEVCWNSRGDKVGASASDGSVF 599
+ G+ + SDG +
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLL 1162
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 131/334 (39%), Gaps = 49/334 (14%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ LW+++ + H V+ V FSPDG + S D+ + +W +
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK----------- 912
Query: 182 GGIFEVCWNSRGTPPNPPESMEVD---ASIEIPQSKATKLIGH---------ESEVFICA 229
+VC NS + + + + + + +LI E++V C
Sbjct: 913 ----KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 968
Query: 230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN 289
+P +++A G D +I ++ ++ S G V K V + +
Sbjct: 969 LSPHLEYVAFGDEDGAIKIIELPNN-------------RVFSSG---VGHKKAVRHIQFT 1012
Query: 290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKTTII 347
+G L + S D ++W L H+ + F L + R +LS D T +
Sbjct: 1013 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLSWSFDGTVKV 1069
Query: 348 WDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE 406
W+ +G+ E+ F+ H L S+ T F+S S D+ + P+ +GH
Sbjct: 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC 1129
Query: 407 VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
V + G+LLA+ D+ ++IW++ +H
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 39/318 (12%)
Query: 139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP 198
HT+ VY FS DG+ +AS DK + ++ A TG+ + K EV + + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED--EVLCCAFSSDDSY 671
Query: 199 PESMEVDASIEIPQSKATKLI----GHESEVFICAWNPVKD--FLASGSGDSTARIWDMT 252
+ D ++I S KL+ H +V C + + LA+GS D ++WD+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL- 730
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
+ KE + T V ++ + LA+ S DG R+W +
Sbjct: 731 -----NQKECR----------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 313 -------LKSTLGQHKGP-------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 358
+K + P + W+ G+ I+ A +K + SG +
Sbjct: 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835
Query: 359 FSFHSAPALDVDWQSNTSFASCSTDQH-IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL 417
+ H + D+ A + Q+ + + + S V GH + V+ + + P G
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895
Query: 418 LLASCSDDMTLKIWSLDK 435
+ SDD T+++W K
Sbjct: 896 SFLTASDDQTIRVWETKK 913
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
Q ASC D+ + V K + + + + H +EV + +A+CS D +KIW
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK----------STLGQHKG 481
VH H++++ ++ S F LK +T+ H
Sbjct: 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASG------QCEQQFSFHSAPALDVDWQSNTS 535
+ +++ + S D T +WD S ++ F P DV+
Sbjct: 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
S D+ I K V F+ HT+G L + G + C S D + A
Sbjct: 805 SWSADGDKIIVAAK----NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
T +W + L+ L H V AFS DG LA+G + + IW+ GQL+HS
Sbjct: 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 34/120 (28%)
Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
HT+ V + G +ASC D TL+++ + + D++AH E+ +S
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD----- 668
Query: 463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 522
+YI + DK IWD+A+G+ + HS
Sbjct: 669 -----------------------------DSYIATCSADKKVKIWDSATGKLVHTYDEHS 699
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/562 (21%), Positives = 209/562 (37%), Gaps = 120/562 (21%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL ++ E GE L + H + V AFS D ++A+ S DK V IW + TG+LVH+Y
Sbjct: 645 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 704
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPVKDF 236
C + + + D +++ + + GH + V C ++P +
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 237 LASGSGDSTARIWDMTDSTKKD--------------PKELQIVLRHCI-SKGGTE--VPS 279
LAS S D T R+WD+ + ++ P++++++++ C S G + V +
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824
Query: 280 NKDVTSLDWNNNGSF--LATGS-----------YDGYARI---------WTSDGSLK-ST 316
V D + +G + TG YD A I W D LK +
Sbjct: 825 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 884
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--------AASGQCEQQFSFHSAPAL- 367
H + + ++ G+ L+A D+T +W+ A + E F +
Sbjct: 885 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 944
Query: 368 -----------------DVDWQSNTSFASCSTDQH------------IHVCKLHSDKPVK 398
+D+ + C H I + +L +++
Sbjct: 945 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
S GH V I++ G L S S+D +++W+ + V LQAH + +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD------- 1056
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
F L + R +LS D T +W+ +G+ E+ F
Sbjct: 1057 -------------------------FRLLQDSR---LLSWSFDGTVKVWNVITGRIERDF 1088
Query: 519 SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGI 577
+ H L S+ T F+S S D+ + P+ +GH G + S GI
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGI 1147
Query: 578 FEVCWNSRGDKVGASASDGSVF 599
+ G+ + SDG +
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLL 1169
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/334 (20%), Positives = 131/334 (39%), Gaps = 49/334 (14%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ LW+++ + H V+ V FSPDG + S D+ + +W +
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK----------- 919
Query: 182 GGIFEVCWNSRGTPPNPPESMEVD---ASIEIPQSKATKLIGH---------ESEVFICA 229
+VC NS + + + + + + +LI E++V C
Sbjct: 920 ----KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC 975
Query: 230 WNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWN 289
+P +++A G D +I ++ ++ S G V K V + +
Sbjct: 976 LSPHLEYVAFGDEDGAIKIIELPNN-------------RVFSSG---VGHKKAVRHIQFT 1019
Query: 290 NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKTTII 347
+G L + S D ++W L H+ + F L + R +LS D T +
Sbjct: 1020 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLSWSFDGTVKV 1076
Query: 348 WDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE 406
W+ +G+ E+ F+ H L S+ T F+S S D+ + P+ +GH
Sbjct: 1077 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC 1136
Query: 407 VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
V + G+LLA+ D+ ++IW++ +H
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 39/318 (12%)
Query: 139 HTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNP 198
HT+ VY FS DG+ +AS DK + ++ A TG+ + K EV + + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED--EVLCCAFSSDDSY 678
Query: 199 PESMEVDASIEIPQSKATKLI----GHESEVFICAWNPVKD--FLASGSGDSTARIWDMT 252
+ D ++I S KL+ H +V C + + LA+GS D ++WD+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL- 737
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
+ KE + T V ++ + LA+ S DG R+W +
Sbjct: 738 -----NQKECR----------NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 313 -------LKSTLGQHKGP-------IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 358
+K + P + W+ G+ I+ A +K + SG +
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 842
Query: 359 FSFHSAPALDVDWQSNTSFASCSTDQH-IHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGL 417
+ H + D+ A + Q+ + + + S V GH + V+ + + P G
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 418 LLASCSDDMTLKIWSLDK 435
+ SDD T+++W K
Sbjct: 903 SFLTASDDQTIRVWETKK 920
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
Q ASC D+ + V K + + + + H +EV + +A+CS D +KIW
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK----------STLGQHKG 481
VH H++++ ++ S F LK +T+ H
Sbjct: 692 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIWDAASG------QCEQQFSFHSAPALDVDWQSNTS 535
+ +++ + S D T +WD S ++ F P DV+
Sbjct: 752 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 811
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASA 593
S D+ I K V F+ HT+G L + G + C S D + A
Sbjct: 812 SWSADGDKIIVAAK----NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
T +W + L+ L H V AFS DG LA+G + + IW+ GQL+HS
Sbjct: 1115 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 34/120 (28%)
Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
HT+ V + G +ASC D TL+++ + + D++AH E+ +S
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD----- 675
Query: 463 NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 522
+YI + DK IWD+A+G+ + HS
Sbjct: 676 -----------------------------DSYIATCSADKKVKIWDSATGKLVHTYDEHS 706
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 138/357 (38%), Gaps = 68/357 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGG-- 183
DVE + L+ HT V V FS DG++LA+G +K ++ G LV
Sbjct: 54 DVELHKSLD----HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN 108
Query: 184 -----------------IFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI-GHESEV 225
I VC++ G + +I K ++ GHE ++
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 226 FICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS 285
+ + P D L SGSGD T RIWD+ + Q L I G T V +
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDL--------RTGQCSLTLSIEDGVTTVAVSP---- 216
Query: 286 LDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ-------HKGPIFALKWNKRGNYIL 337
+G ++A GS D R+W S+ G L L HK ++++ + + G ++
Sbjct: 217 ----GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 338 SAGVDKTTIIWDAA------------SGQCEQQFSFHSAPALDVDWQSNTSFA-SCSTDQ 384
S +D++ +W+ SG CE + H L V N + S S D+
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 385 HIHVCKLHSDKPVKSFEGHTNEV------NAIKWDPQGLLLASCSDDMTLKIWSLDK 435
+ S P+ +GH N V N P+ + A+ S D +IW K
Sbjct: 333 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 141/352 (40%), Gaps = 59/352 (16%)
Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTD--- 253
NP E+D + K + H S V ++ ++LA+G + T +++ ++D
Sbjct: 46 NPALPREIDVELH-------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 97
Query: 254 --------STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
+ KDP+ L + S+ + S+ ++ +G FLATG+ D R
Sbjct: 98 VARLSDDSAANKDPENLNT---------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148
Query: 306 IW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS- 363
IW + + L H+ I++L + G+ ++S D+T IWD +GQC S
Sbjct: 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 208
Query: 364 APALDVDWQSNTSFASCSTDQHIHVCKLHS-------DKPVKSFEGHTNEVNAIKWDPQG 416
+ V A+ S D+ + V + D +S GH + V ++ + G
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 417 LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTL 476
+ S S D ++K+W+L A+NK ++ PN + T
Sbjct: 269 QSVVSGSLDRSVKLWNLQ--------NANNKS-----------DSKTPNSGTCEV---TY 306
Query: 477 GQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
HK + ++ + YILS D+ + WD SG H + V
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 32/279 (11%)
Query: 111 ITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVY--SVAFSPDGKFLASGSFDKCVHIWS 168
+++G V RL+ + E LNT + + +Y SV FSPDGKFLA+G+ D+ + IW
Sbjct: 92 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151
Query: 169 ARTGQLVHSYKG-TGGIFEVCWNSRGTPPNPPESMEVDASIEI---PQSKATKLIGHESE 224
++V +G I+ + + G + S D ++ I + + + E
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 208
Query: 225 VFICAWNPVK-DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDV 283
V A +P ++A+GS D R+WD E ++ S+ + V
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWD---------SETGFLVERLDSENESGTGHKDSV 259
Query: 284 TSLDWNNNGSFLATGSYDGYARIWT-------------SDGSLKSTLGQHKGPIFALKWN 330
S+ + +G + +GS D ++W + G+ + T HK + ++
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 331 KRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
+ YILS D+ + WD SG H + V
Sbjct: 320 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 39/212 (18%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSY- 178
T+ +WD+ G+C TL+ + V +VA SP DGK++A+GS D+ V +W + TG LV
Sbjct: 188 TVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 179 ----KGTG---GIFEVCWNSRGTPPNPPESMEVDASIEI--------------PQSKATK 217
GTG ++ V + G S +D S+++ P S +
Sbjct: 247 SENESGTGHKDSVYSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 218 L--IGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+ IGH+ V A +++ SGS D WD KK L ++ H S
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD-----KKSGNPLLMLQGHRNSVISV 358
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIW 307
V +N ++N ATGS D ARIW
Sbjct: 359 AV-ANGSSLGPEYN----VFATGSGDCKARIW 385
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 108/525 (20%), Positives = 192/525 (36%), Gaps = 119/525 (22%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL ++ E GE L + H + V AFS D +F+A+ S DK V IW++ TG+LVH+Y
Sbjct: 644 TLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE 703
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPVKDF 236
C + + + D +++ + + GH + V C ++P
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 237 LASGSGDSTARIWDMTDSTKK-------------DPKE-LQIVLRHCI-SKGGTE--VPS 279
LAS S D T ++WD T + ++ DP+E ++++++ C S G V +
Sbjct: 764 LASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Query: 280 NKDVTSLDWNNNGSF---------------------LATGSYDGY-ARIWTSDGSLK-ST 316
+ D + +G LA + Y +W +D K +
Sbjct: 824 KNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVAD 883
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD--------AASGQCEQQFSFHSAPAL- 367
H + + ++ G+ L++ D+T +W+ A + E F +
Sbjct: 884 CRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 368 -----------------DVDWQSNTSFASCSTDQH------------IHVCKLHSDKPVK 398
+D+ + + C H I + +L +++ +
Sbjct: 944 LAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQ 1003
Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
S H V I++ L S SDD +++W+ D C+ L+ H + +
Sbjct: 1004 SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKD------- 1055
Query: 459 PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
F L N R +LS D T +W+ +G E+ F
Sbjct: 1056 -------------------------FRLLKNSR---LLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 519 SFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGH 562
H L D + T F+S S D+ + P+ GH
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGH 1132
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 94/438 (21%), Positives = 162/438 (36%), Gaps = 81/438 (18%)
Query: 43 LVPPAALL-SIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFVANRQNQLNSQR 101
LV PA L+ ++ E + +V EN QE L P+ V Q L
Sbjct: 522 LVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFPNIV---QLGLCEPE 578
Query: 102 TNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTR-----HTEPVYSVAFSPDGKFLA 156
T+ + +EV L L + + N L+R HT+ VY FS DG+ +A
Sbjct: 579 TSEVYQQAKLQAKQEVDNGMLYLEWINKKNITN-LSRLVVRPHTDAVYHACFSEDGQRIA 637
Query: 157 SGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKAT 216
S DK + ++ A TG+ K
Sbjct: 638 SCGADKTLQVFKAETGE----------------------------------------KLL 657
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWD-MTDSTKKDPKELQIVLRHCISKGGT 275
++ HE EV CA++ F+A+ S D +IW+ MT L H +
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGE-----------LVHTYDEHSE 706
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGN 334
+V S ++ LATGS D + ++W + ++T+ H + +++
Sbjct: 707 QVNCCHFTNS----SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 335 YILSAGVDKTTIIWDAASG------QCEQQFSFHSAPALDVD-------WQSNTSFASCS 381
+ S D T +WDA S +Q F P D++ W ++ + +
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA 822
Query: 382 TDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
I + +H+ + GH + + + PQ L +++W+ D + V
Sbjct: 823 AKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVA 882
Query: 441 DLQAHNKEIYTIKWSPTG 458
D + H ++ + +SP G
Sbjct: 883 DCRGHLSWVHGVMFSPDG 900
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 124/335 (37%), Gaps = 51/335 (15%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ LW+ + + H V+ V FSPDG + S D+ + +W +
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK----------- 918
Query: 182 GGIFEVCWNSRGTPPNPPESM----EVDASIEIPQSKATKLIG---------HESEVFIC 228
+VC NS + + EV + + + +LI E++V C
Sbjct: 919 ----KVCKNSAVMLKQEVDVVFQENEV-MVLAVDHIRRLQLINGRTGQIDYLTEAQVSCC 973
Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
+P ++A G + I ++ ++ + Q +H K V + +
Sbjct: 974 CLSPHLQYIAFGDENGAIEILELVNN-----RIFQSRFQH-----------KKTVWHIQF 1017
Query: 289 NNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPI--FALKWNKRGNYILSAGVDKTTI 346
+ L + S D ++W L H+ + F L N R +LS D T
Sbjct: 1018 TADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR---LLSWSFDGTVK 1074
Query: 347 IWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN 405
+W+ +G E+ F H L D + T F+S S D+ + P+ GH
Sbjct: 1075 VWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 406 EVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
V + LLA+ D+ ++IW++ +H
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 138 RHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ--LVHSYKGTGGIFEVCWNSRGTP 195
+H + V+ + F+ D K L S S D + +W+ + + + ++ T F + NSR
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLL- 1065
Query: 196 PNPPESMEVDASIE----IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM 251
S D +++ I +K + H+ V C + +S S D TA+IW
Sbjct: 1066 -----SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSD 310
+L + L G S V S + LATG +G RIW S+
Sbjct: 1121 ---------DLLLPLHELRGHNGCVRCSAFSVDS-------TLLATGDDNGEIRIWNVSN 1164
Query: 311 GSL--------KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
G L + H G + L ++ G ++SAG W+ +G+ Q F
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTF 1219
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD 436
ASC D+ + V K + + + + H +EV + +A+CS D +KIW+
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 437 NCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILK----------STLGQHKGPIFAL 486
VH H++++ ++ + S LK +T+ H +
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASG 512
+++ + S D T +WDA S
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSA 781
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 31/261 (11%)
Query: 212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI- 270
+SK GH S V ++P + S D T R+W+ TKK K ++L+ +
Sbjct: 878 RSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWE----TKKVCKNSAVMLKQEVD 933
Query: 271 ------------------------SKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARI 306
G + + V+ + + ++A G +G I
Sbjct: 934 VVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEI 993
Query: 307 W-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP 365
+ + + QHK ++ +++ ++S+ D +W+ +C H
Sbjct: 994 LELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQET 1052
Query: 366 ALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D N+ S S D + V + + K F H V + +S S D
Sbjct: 1053 VKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 426 MTLKIWSLDKDNCVHDLQAHN 446
T KIWS D +H+L+ HN
Sbjct: 1113 KTAKIWSFDLLLPLHELRGHN 1133
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH 176
T +W + L+ L H V AFS D LA+G + + IW+ G+L+H
Sbjct: 1114 TAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 14/234 (5%)
Query: 292 GSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDA 350
G+ + +GS D ++W++ G TL H G +++ + R N I+S D+T +W+A
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 351 ASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAI 410
+G+C H++ + S S D + V + + + + GH V +
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 411 KWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSL-I 469
++D G + S + D +K+W + + C+H LQ H +Y++++ + + + S+ +
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303
Query: 470 FILKS-----TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 518
+ +++ TL H+ ++ + N ++S D T IWD +GQC Q
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTL 355
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 36/306 (11%)
Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV 277
L GH+ V C + + SGS D+T ++W K L+ ++ H GG
Sbjct: 114 LKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGH---TGGVWS 164
Query: 278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQHKGPIFALKWNKRGNYI 336
+D + + +GS D ++W ++ G TL H + + +++ +
Sbjct: 165 SQMRD----------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RV 212
Query: 337 LSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP 396
+S D T +WD +GQC H A V + S + D + V ++
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKVWDPETETC 271
Query: 397 VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
+ + +GHTN V ++++D G+ + S S D ++++W ++ NC+H L H ++
Sbjct: 272 LHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 457 TGPETSNPNMSL-IFILKS-----TL---GQHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
+ N + ++ I+ +K+ TL +H+ + L++NK N+++++ D T +W
Sbjct: 330 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Query: 508 DAASGQ 513
D +G+
Sbjct: 388 DLKTGE 393
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/326 (21%), Positives = 141/326 (43%), Gaps = 71/326 (21%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +W G+CL TL HT V+S + + SGS D+ + +W+A TG+ +H+
Sbjct: 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHT--- 194
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
L GH S V + + + SG
Sbjct: 195 -------------------------------------LYGHTSTVRCMHLHEKR--VVSG 215
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D+T R+WD+ + + L +++ H V + + V +G + +G+Y
Sbjct: 216 SRDATLRVWDI-----ETGQCLHVLMGH--------VAAVRCV-----QYDGRRVVSGAY 257
Query: 301 DGYARIWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
D ++W + + TL H +++L+++ G +++S +D + +WD +G C
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL 315
Query: 360 SFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEG---HTNEVNAIKWDPQG 416
+ H + ++ + N S + D + + + + + +++ +G H + V ++++
Sbjct: 316 TGHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN- 373
Query: 417 LLLASCSDDMTLKIWSLDKDNCVHDL 442
+ + SDD T+K+W L + +L
Sbjct: 374 -FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 121 TLPLWDVERGECLNTL---TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
T+ +WD++ G+CL TL +H V + F+ + F+ + S D V +W +TG+ + +
Sbjct: 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRN 397
Query: 178 YKG--TGGIFEVCWNSRGT 194
+GG V W R +
Sbjct: 398 LVTLESGGSGGVVWRIRAS 416
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 37/155 (23%)
Query: 419 LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQ 478
+ S SDD TLK+WS C+ L H + WS
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSS---------------------- 165
Query: 479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFAS 538
R N I+S D+T +W+A +G+C H++ + S
Sbjct: 166 ----------QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVS 214
Query: 539 CSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKG 573
S D + V + + + + GH Y G
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 249
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 551
GN I+S D T +W A +G+C + H+ + N S STD+ + V
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAE 187
Query: 552 SDKPVKSFEGHTT 564
+ + + + GHT+
Sbjct: 188 TGECIHTLYGHTS 200
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 67/320 (20%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPP 196
T H + + SVA+ P LA+GSFD V IW+ +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA-----------------------KEESA 91
Query: 197 NPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTK 256
+ M++ A IE GHE+EV AW+ +LA+ S D + IW+ TD +
Sbjct: 92 DRTFEMDLLAIIE----------GHENEVKGVAWSNDGYYLATCSRDKSVWIWE-TDESG 140
Query: 257 KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS---DGSL 313
++ + + ++ H ++DV + W+ + + LA+ SYD RIW D
Sbjct: 141 EEYECISVLQEH-----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189
Query: 314 KSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTI-IW--------DAASGQCEQQF-SFH 362
+ L H+G +++ ++K G + L +G D +T+ +W D CE H
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249
Query: 363 SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH-----TNEVNAIKW-DPQG 416
+V W N AS D + V + D K F E+N +KW + G
Sbjct: 250 KRQVYNVAWGFNGLIASVGADGVLAVYE-EVDGEWKVFAKRALCHGVYEINVVKWLELNG 308
Query: 417 -LLLASCSDDMTLKIWSLDK 435
+LA+ DD + WSL+K
Sbjct: 309 KTILATGGDDGIVNFWSLEK 328
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 116/278 (41%), Gaps = 40/278 (14%)
Query: 236 FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
LA+GS D ++ S K D L VL E K + S+ W + S L
Sbjct: 26 ILATGSTDRKIKL----VSVKYDDFTLIDVL--------DETAHKKAIRSVAWRPHTSLL 73
Query: 296 ATGSYDGYARIWTSDGS--------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTII 347
A GS+D IW + S L + + H+ + + W+ G Y+ + DK+ I
Sbjct: 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
Query: 348 WDA-ASG---QCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSD--KPVKSF 400
W+ SG +C HS V W S AS S D + + K + D + V
Sbjct: 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL 193
Query: 401 EGHTNEVNAIKWDP-QGLL-LASCSDDMTLKIWSL---DKDN-----CVHDL-QAHNKEI 449
GH V + +D +G+ L S SDD T+++W D+D+ C L H +++
Sbjct: 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253
Query: 450 YTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALK 487
Y + W G S ++ + + G+ K +FA +
Sbjct: 254 YNVAWGFNGLIASVGADGVLAVYEEVDGEWK--VFAKR 289
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKD----NCVHDLQAHNKEIYTIKWS 455
EGH NEV + W G LA+CS D ++ IW D+ C+ LQ H++++ + W
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 456 PTGPETSNPNM-SLIFILK---------STLGQHKGPIFALKWNK-RGNYILSAGVDKTT 504
P+ ++ + + I K + L H+G +++ ++K G + L +G D +T
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 505 I-IW--------DAASGQCEQQF-SFHSAPALDVDWQSNTSFASCSTD 542
+ +W D CE H +V W N AS D
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGAD 270
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 128 ERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW-------------SARTGQL 174
E EC++ L H++ V V + P LAS S+D V IW + G +
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV 200
Query: 175 VHS-YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI---GHESEVFICAW 230
S + T G+F +C S + + M D + Q + I H+ +V+ AW
Sbjct: 201 WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE--DDQQEWVCEAILPDVHKRQVYNVAW 258
Query: 231 NPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNN 290
+AS D +++ D E ++ + + G E+ K + N
Sbjct: 259 G-FNGLIASVGADGVLAVYEEVDG------EWKVFAKRALCHGVYEINVVKWLEL----N 307
Query: 291 NGSFLATGSYDGYARIWT 308
+ LATG DG W+
Sbjct: 308 GKTILATGGDDGIVNFWS 325
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 42/328 (12%)
Query: 203 EVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKEL 262
V+A + L GH ++V W K + S S D +WD + K+
Sbjct: 45 RVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE----- 99
Query: 263 QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW--TSD-----GSLKS 315
H ++ T V + + +G +A G D ++ T D + K
Sbjct: 100 -----HAVTMPCTWV------MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKK 148
Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW---Q 372
++ H + A + IL+A D T +WD SGQ Q F H A L +D +
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
+ +F S D+ V + S + V++FE H ++VN++++ P G AS SDD T +++
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 433 LDKDNCVHDLQAHNKE--IY---TIKWSPTG----PETSNPNMSLIFILK----STLGQH 479
L D ++ ++KE I+ ++ +S +G ++ +++ +LK S L H
Sbjct: 269 LRAD---REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIW 507
+ + L+ + G S D T +W
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 40/254 (15%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ- 372
+ TL H + + W K I+S+ D I+WD+ + E + + +
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 373 SNTSFASCSTDQHIHVCKLHSDK------PVKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
S + A D V L DK KS HTN ++A + + + + S D
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ + H ++ + +P+
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPS----------------------------- 207
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHI 545
+ GN +S G DK ++WD SGQC Q F H + V + S +FAS S D
Sbjct: 208 ---ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ V +
Sbjct: 265 RLYDLRADREVAIY 278
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 87/231 (37%), Gaps = 57/231 (24%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPD--GKFLASGSFDKCVHIWSARTGQLVHSY 178
T LWDVE G+ L + H V + +P G SG DK +W R+GQ V ++
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA 238
+ HES+V + P D A
Sbjct: 237 E----------------------------------------THESDVNSVRYYPSGDAFA 256
Query: 239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
SGS D+T R++D+ + +E+ I + I G +S+D++ +G L G
Sbjct: 257 SGSDDATCRLYDL-----RADREVAIYSKESIIFGA---------SSVDFSLSGRLLFAG 302
Query: 299 SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
D +W GS S L H+ + L+ + G S D T +W
Sbjct: 303 YNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 60/257 (23%)
Query: 225 VFICAWNPVKDFLASGSGDSTARIWDMT-DSTKKDPKELQIVLRHCISKGGTEVPSNKDV 283
V CA+ P +A G D+ ++ +T D + + + V H +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH-----------TNYL 157
Query: 284 TSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKW--NKRGNYILSAG 340
++ + N+ + T S DG +W G L + H + L ++ GN +S G
Sbjct: 158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217
Query: 341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNTSFASCSTDQHIHVCKLHSDKPVKS 399
DK ++WD SGQC Q F H + V + S +FAS S D + L +D+ V
Sbjct: 218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277
Query: 400 FE--------------------------------------------GHTNEVNAIKWDPQ 415
+ GH N V+ ++ P
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 416 GLLLASCSDDMTLKIWS 432
G S S D TL++W+
Sbjct: 338 GTAFCSGSWDHTLRVWA 354
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 19/202 (9%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
K ++ +GH N+V + W + S S D + +W N H + + +
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 455 SPTG---------------PETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG 499
+P+G P T + N ++ K ++ H + A + IL+A
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 500 VDKTTIIWDAASGQCEQQFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPV 556
D T +WD SGQ Q F H A L +D ++ +F S D+ V + S + V
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 557 KSFEGHTTGQLVHSYKGTGGIF 578
++FE H + Y +G F
Sbjct: 234 QAFETHESDVNSVRYYPSGDAF 255
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
T+ +WDV +G ++ L H V ++ SPDG SGS+D + +W+
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 317 LGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN N Y+LSA D T +WD + E + F+ H+A D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + ++ KP + + HT EVN + ++P +LA+
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSP 456
S D T+ +W L +H ++H EI+ ++WSP
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 114/303 (37%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WNP + +L S S D T +WD+ + PKE +++ I G T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT----PKEHRVIDAKNIFTGHT 233
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S T+ H + L +N
Sbjct: 234 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 314
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLHS FE H +E+ ++W P +LAS D L +W L K E
Sbjct: 315 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----------E 358
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
+ + + GP L+FI G H I WN +I+ S D +W
Sbjct: 359 EQSTEDAEDGPP------ELLFI----HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Query: 508 DAA 510
A
Sbjct: 409 QMA 411
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 42/177 (23%)
Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
H EVN ++ PQ + + + D V D H P+ PE S
Sbjct: 129 HEGEVNRARYMPQNACVIATK--------TPSSDVLVFDYTKH----------PSKPEPS 170
Query: 463 ---NPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ- 517
P++ L H+ + L WN N Y+LSA D T +WD + E +
Sbjct: 171 GECQPDLRL--------RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 222
Query: 518 ------FSFHSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 563
F+ H+A DV W + F S + DQ + + ++ KP + + HT
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 279
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 51/257 (19%)
Query: 130 GECLNTLTR--HTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF- 185
GEC L H + Y ++++P+ +L S S D + +W H IF
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 230
Query: 186 -------EVCWNSR-----GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV 233
+V W+ G+ + + M D + + H +EV ++NP
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 234 KDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWN-N 290
+F LA+GS D T +WD+ + L++ L S+KD + + W+ +
Sbjct: 291 SEFILATGSADKTVALWDL--------RNLKLKLH--------SFESHKDEIFQVQWSPH 334
Query: 291 NGSFLATGSYDGYARIW--TSDGSLKSTLGQHKGP-------------IFALKWNKRGNY 335
N + LA+ D +W + G +ST GP I WN +
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 336 IL-SAGVDKTTIIWDAA 351
I+ S D +W A
Sbjct: 395 IICSVSEDNIMQVWQMA 411
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 317 LGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN N Y+LSA D T +WD + E + F+ H+A D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + ++ KP + + HT EVN + ++P +LA+
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSP 456
S D T+ +W L +H ++H EI+ ++WSP
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 114/303 (37%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WNP + +L S S D T +WD+ + PKE +++ I G T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT----PKEHRVIDAKNIFTGHT 235
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S T+ H + L +N
Sbjct: 236 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 316
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLHS FE H +E+ ++W P +LAS D L +W L K E
Sbjct: 317 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----------E 360
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
+ + + GP L+FI G H I WN +I+ S D +W
Sbjct: 361 EQSTEDAEDGPP------ELLFI----HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Query: 508 DAA 510
A
Sbjct: 411 QMA 413
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 42/177 (23%)
Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
H EVN ++ PQ + + + D V D H P+ PE S
Sbjct: 131 HEGEVNRARYMPQNACVIATK--------TPSSDVLVFDYTKH----------PSKPEPS 172
Query: 463 ---NPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ- 517
P++ L H+ + L WN N Y+LSA D T +WD + E +
Sbjct: 173 GECQPDLRL--------RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 224
Query: 518 ------FSFHSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 563
F+ H+A DV W + F S + DQ + + ++ KP + + HT
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 281
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 51/257 (19%)
Query: 130 GECLNTLTR--HTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF- 185
GEC L H + Y ++++P+ +L S S D + +W H IF
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 232
Query: 186 -------EVCWNSR-----GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV 233
+V W+ G+ + + M D + + H +EV ++NP
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 234 KDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWN-N 290
+F LA+GS D T +WD+ + L++ L S+KD + + W+ +
Sbjct: 293 SEFILATGSADKTVALWDL--------RNLKLKLH--------SFESHKDEIFQVQWSPH 336
Query: 291 NGSFLATGSYDGYARIW-------------TSDG--SLKSTLGQHKGPIFALKWNKRGNY 335
N + LA+ D +W DG L G H I WN +
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 336 IL-SAGVDKTTIIWDAA 351
I+ S D +W A
Sbjct: 397 IICSVSEDNIMQVWQMA 413
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN N Y+LSA D T +WD + E + F+ H+A D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + ++ KP + + HT EVN + ++P +LA+
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
S D T+ +W L +H ++H EI+ ++WSP H
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP----------------------HNE 334
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
I A S+G D+ +W DA G E F H+A D
Sbjct: 335 TILA-----------SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 528 VDWQSNTSFASCSTDQ 543
W N + CS +
Sbjct: 384 FSWNPNEPWIICSVSE 399
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 114/303 (37%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WNP + +L S S D T +WD+ + PKE +++ I G T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT----PKEHRVIDAKNIFTGHT 231
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S T+ H + L +N
Sbjct: 232 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 312
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLHS FE H +E+ ++W P +LAS D L +W L K E
Sbjct: 313 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----------E 356
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
+ + + GP L+FI G H I WN +I+ S D +W
Sbjct: 357 EQSTEDAEDGPP------ELLFI----HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Query: 508 DAA 510
A
Sbjct: 407 QMA 409
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 68/178 (38%), Gaps = 42/178 (23%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET 461
H EVN ++ PQ + + + D V D H P+ PE
Sbjct: 126 NHEGEVNRARYMPQNACVIATK--------TPSSDVLVFDYTKH----------PSKPEP 167
Query: 462 S---NPNMSLIFILKSTLGQHKGPIFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQ 517
S P++ L H+ + L WN N Y+LSA D T +WD + E +
Sbjct: 168 SGECQPDLRL--------RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219
Query: 518 -------FSFHSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 563
F+ H+A DV W + F S + DQ + + ++ KP + + HT
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 51/257 (19%)
Query: 130 GECLNTLTR--HTEPVYSVAFSPD-GKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF- 185
GEC L H + Y ++++P+ +L S S D + +W H IF
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 228
Query: 186 -------EVCWNSR-----GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV 233
+V W+ G+ + + M D + + H +EV ++NP
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 234 KDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWN-N 290
+F LA+GS D T +WD+ + L++ L S+KD + + W+ +
Sbjct: 289 SEFILATGSADKTVALWDL--------RNLKLKLH--------SFESHKDEIFQVQWSPH 332
Query: 291 NGSFLATGSYDGYARIW-------------TSDG--SLKSTLGQHKGPIFALKWNKRGNY 335
N + LA+ D +W DG L G H I WN +
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 336 IL-SAGVDKTTIIWDAA 351
I+ S D +W A
Sbjct: 393 IICSVSEDNIMQVWQMA 409
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 60/330 (18%)
Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEV 277
L GH +V+ W P K+++ S S D +W+ S K +L HC
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HC-------- 108
Query: 278 PSNKDVTSLDWNNNGSFLATGSYDGYARIWT------SDGSL--KSTLGQHKGPIFALKW 329
V + NG +A G D I+ DG++ L HKG + ++
Sbjct: 109 ---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 330 --NKRGNYILSAGVDKTTIIWDAASGQCEQQF-----SFHSAPALDVDWQSNTS--FASC 380
++ I +G D+T ++WD +GQ F S H+A L + S + F S
Sbjct: 166 VPDQETRLITGSG-DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 381 STDQHIHVCKLH-SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCV 439
S D + + L + + V+++ GH ++N++K+ P G + SDD T +++ +
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--- 281
Query: 440 HDLQAHNKE----------IYTIKWSPTG----PETSNPN--------MSLIFILKSTLG 477
H LQ +N+E + ++ +S +G SN + ++ L +
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 478 QHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
H+G I L + G+ + + DK IW
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 32/246 (13%)
Query: 132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK-----------G 180
C TL H+ VYS+ ++P+ ++ S S D + +W+A T Q H+ K
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDF-LAS 239
G C S + D +P S+ L GH+ C + P ++ L +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV--LTGHKGYASSCQYVPDQETRLIT 175
Query: 240 GSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS--NKDVTSLDWNN-NGSFLA 296
GSGD T +WD+T + IS G+E PS DV SL N+ N +
Sbjct: 176 GSGDQTCVLWDVTTGQR-------------ISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 297 TGSYDGYARIWTSDGSLKS--TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 354
+GS D R+W + ++ T H+G I ++K+ G + D T ++D +G
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 355 CEQQFS 360
Q ++
Sbjct: 283 QLQVYN 288
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 37/225 (16%)
Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
++ +GH+ +V ++ W P+ + S S D L +W+ H ++ H + ++P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 458 GPETSNPNM---SLIFILKS------------TLGQHKGPIFALKW--NKRGNYILSAGV 500
G + + IF L S L HKG + ++ ++ I +G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG- 178
Query: 501 DKTTIIWDAASGQCEQQF-----SFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLH-S 552
D+T ++WD +GQ F S H+A L + S + F S S D + + L +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 553 DKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS 597
+ V+++ GH G I V + G + G + DG+
Sbjct: 239 SRAVRTYHGH-----------EGDINSVKFFPDGQRFGTGSDDGT 272
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNT 375
TL H G +++L W N+I+SA D I+W+A + Q H ++ + N
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 376 SFASC-STDQHIHVCKLHS------DKPV-KSFEGHTNEVNAIKWDP-QGLLLASCSDDM 426
+C D + L S + PV + GH ++ ++ P Q L + S D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 427 TLKIWSL 433
T +W +
Sbjct: 181 TCVLWDV 187
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN ++LSA D T +WD ++ E + F+ H+A D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + S+ KP S + HT EVN + ++P +LA+
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
S D T+ +W L +H ++H EI+ ++WSP H
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP----------------------HNE 330
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
I A S+G D+ +W DA G E F H+A D
Sbjct: 331 TILA-----------SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISD 379
Query: 528 VDWQSNTSFASCSTDQ 543
W N + CS +
Sbjct: 380 FSWNPNEPWVICSVSE 395
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 112/303 (36%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WNP + L S S D T +WD++ PKE ++V I G T
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAV----PKEGKVVDAKTIFTGHT 227
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKS----TLGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S ++ H + L +N
Sbjct: 228 AV-----VEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 308
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLHS FE H +E+ ++W P +LAS D L +W L K + + Q
Sbjct: 309 KLHS------FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK---IGEEQ----- 354
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
SP E P + I G H I WN +++ S D +W
Sbjct: 355 ------SPEDAEDGPPELLFIH------GGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Query: 508 DAA 510
A
Sbjct: 403 QMA 405
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 130 GECLNTLTR--HTEPVYSVAFSPD-GKFLASGSFDKCVHIWS----ARTGQLVHS---YK 179
GEC L H + Y ++++P+ L S S D + +W + G++V + +
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT 224
Query: 180 GTGGIFE-VCWNSR-----GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPV 233
G + E V W+ G+ + + M D + + H +EV ++NP
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 234 KDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-VTSLDWN-N 290
+F LA+GS D T +WD+ + L++ L S+KD + + W+ +
Sbjct: 285 SEFILATGSADKTVALWDL--------RNLKLKLH--------SFESHKDEIFQVQWSPH 328
Query: 291 NGSFLATGSYDGYARIW-------------TSDG--SLKSTLGQHKGPIFALKWNKRGNY 335
N + LA+ D +W DG L G H I WN +
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 336 IL-SAGVDKTTIIWDAA 351
++ S D +W A
Sbjct: 389 VICSVSEDNIMQVWQMA 405
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN ++LSA D T +WD +G E + F+ HSA D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + S+ KP + HT EVN + ++P +LA+
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
S D T+ +W L +H ++H EI+ + WSP H
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP----------------------HNE 332
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
I A S+G D+ +W DA G E F H+A D
Sbjct: 333 TILA-----------SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 528 VDWQSNTSFASCSTDQ 543
W N + CS +
Sbjct: 382 FSWNPNEPWVICSVSE 397
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 107/303 (35%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WN + L S S D T +WD+ PKE +IV I G +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN----AGPKEGKIVDAKAIFTGHS 229
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKST----LGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S + H + L +N
Sbjct: 230 AV-----VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 310
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLH+ FE H +E+ + W P +LAS D L +W L K
Sbjct: 311 KLHT------FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK------------- 351
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
I + + + L+FI G H I WN +++ S D IW
Sbjct: 352 ---IGEEQSAEDAEDGPPELLFI----HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Query: 508 DAA 510
A
Sbjct: 405 QMA 407
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 456 PTGPETS---NPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAAS 511
P P+ S NP++ L H+ + L WN ++LSA D T +WD +
Sbjct: 160 PAKPDPSGECNPDLRL--------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA 211
Query: 512 GQCEQQ-------FSFHSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSF 559
G E + F+ HSA DV W + F S + DQ + + S+ KP
Sbjct: 212 GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLV 271
Query: 560 EGHT 563
+ HT
Sbjct: 272 DAHT 275
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 213 SKATKLI-GHESEVFICAWNPVKDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI 270
SK + L+ H +EV ++NP +F LA+GS D T +WD LR+
Sbjct: 265 SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD---------------LRNLK 309
Query: 271 SKGGTEVPSNKDVTSLDWN-NNGSFLATGSYDGYARIW-------------TSDG--SLK 314
K T ++ + W+ +N + LA+ D +W DG L
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELL 369
Query: 315 STLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAA 351
G H I WN +++ S D IW A
Sbjct: 370 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 99/256 (38%), Gaps = 62/256 (24%)
Query: 317 LGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ-------FSFHSAPALD 368
L H+ + L WN ++LSA D T +WD +G E + F+ HSA D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 369 VDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQG-LLLASC 422
V W + F S + DQ + + S+ KP + HT EVN + ++P +LA+
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 423 SDDMTLKIWSLDKDNC-VHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKG 481
S D T+ +W L +H ++H EI+ + WSP H
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP----------------------HNE 332
Query: 482 PIFALKWNKRGNYILSAGVDKTTIIW------------DAASGQCEQQFSF--HSAPALD 527
I A S+G D+ +W DA G E F H+A D
Sbjct: 333 TILA-----------SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 528 VDWQSNTSFASCSTDQ 543
W N + CS +
Sbjct: 382 FSWNPNEPWVICSVSE 397
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 107/303 (35%), Gaps = 78/303 (25%)
Query: 217 KLIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
+L GH+ E + +WN + L S S D T +WD+ PKE +IV I G +
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN----AGPKEGKIVDAKAIFTGHS 229
Query: 276 EVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKST----LGQHKGPIFALKWN 330
V V + W+ + S + + D IW + + S + H + L +N
Sbjct: 230 AV-----VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 331 KRGNYILSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+IL+ G DKT +WD + +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKL---------------------------------- 310
Query: 390 KLHSDKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
KLH+ FE H +E+ + W P +LAS D L +W L K
Sbjct: 311 KLHT------FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK------------- 351
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIW 507
I + + + L+FI G H I WN +++ S D IW
Sbjct: 352 ---IGEEQSAEDAEDGPPELLFI----HGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Query: 508 DAA 510
A
Sbjct: 405 QXA 407
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 42/177 (23%)
Query: 403 HTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS 462
H EVN ++ PQ + + + D V D H P P+ S
Sbjct: 125 HEGEVNRARYXPQNPHIIATK--------TPSSDVLVFDYTKH----------PAKPDPS 166
Query: 463 ---NPNMSLIFILKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIWDAASGQCEQQ- 517
NP++ L H+ + L WN ++LSA D T +WD +G E +
Sbjct: 167 GECNPDLRL--------RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI 218
Query: 518 ------FSFHSAPALDVDWQ--SNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHT 563
F+ HSA DV W + F S + DQ + + S+ KP + HT
Sbjct: 219 VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 139 HTEPVYSVAFSPDGKF-LASGSFDKCVHIWSARTGQL-VHSYKG-TGGIFEVCWN----- 190
HT V ++F+P +F LA+GS DK V +W R +L +H+++ IF+V W+
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 191 ---SRGTPPN----PPESMEVDASIEIPQSKATKLI----GHESEVFICAWNPVKDF-LA 238
S GT + + S E + +L+ GH +++ +WNP + + +
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 393
Query: 239 SGSGDSTARIWDMTDSTKKD 258
S S D+ +IW ++ D
Sbjct: 394 SVSEDNIXQIWQXAENIYND 413
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 36/159 (22%)
Query: 213 SKATKLI-GHESEVFICAWNPVKDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCI 270
SK + L+ H +EV ++NP +F LA+GS D T +WD+ + L++ L
Sbjct: 265 SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL--------RNLKLKLH--- 313
Query: 271 SKGGTEVPSNKD-VTSLDWN-NNGSFLATGSYDGYARIW-------------TSDG--SL 313
S+KD + + W+ +N + LA+ D +W DG L
Sbjct: 314 -----TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 314 KSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAA 351
G H I WN +++ S D IW A
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXA 407
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 47/311 (15%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
+T L + +N ++ TG+ D R++ S + L H G ++ALK+ G ++S
Sbjct: 125 ITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKL------- 391
D+T +WD G C F H++ LD V++++ + S D +HV KL
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 392 ----HSDKP------------VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
D P V GH V + G ++ S S D TL +W + +
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
Query: 436 DNCVHDLQAHNKEIYTIKWSPTGPETSNPNM-SLIFI-------LKSTLGQHKGPIFALK 487
C++ L H IY+ + + +M + I I L TL H + L+
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359
Query: 488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHI 545
+ + +++SA D + WDA ++FS+H + A+ + S+ S S +Q
Sbjct: 360 LSDK--FLVSAAADGSIRGWDA--NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-F 414
Query: 546 HVCKLHSDKPV 556
++ L S K V
Sbjct: 415 NIYNLRSGKLV 425
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 16/233 (6%)
Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLL--LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
FEGH + V + + + + S D TL +W L K++ V D H +E
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD---HGEE--- 246
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 511
P T N + +L+ + + + GN ++S D T I+WD A
Sbjct: 247 -HDYPLVFHTPEENPYFVGVLRGHMASVRTV------SGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 512 GQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
+C S H+ + S S D I + L + + + + +GHT
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 352
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 87 PDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSV 146
P FV + + S RT + G + +G + TL +WDV + +CL L+ HT+ +YS
Sbjct: 260 PYFVGVLRGHMASVRTVS-GHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYST 316
Query: 147 AFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
+ + K S S D + IW G+L+++ +G
Sbjct: 317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQG 350
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 59/316 (18%)
Query: 121 TLPLWDVERGECLNTLTRHTEPV--YSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T+ +WD+++G C + H V + + K++ +GS D +H+W V +
Sbjct: 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA 238
G + + ++ TP P + V L GH + V + + + +
Sbjct: 244 -GEEHDYPLVFH---TPEENPYFVGV-------------LRGHMASVRTVSGHG--NIVV 284
Query: 239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
SGS D+T +WD+ K L I+ H + S +++ +
Sbjct: 285 SGSYDNTLIVWDVA-----QMKCLYILSGHT-----------DRIYSTIYDHERKRCISA 328
Query: 299 SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 357
S D RIW +G L TL H + L+ + + +++SA D + WDA +
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA--NDYSR 384
Query: 358 QFSFH--SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS-------------FEG 402
+FS+H + A+ + S+ S S +Q ++ L S K V + F+G
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNFKG 443
Query: 403 HTNEVNAIKWDPQGLL 418
T V A++ D Q L
Sbjct: 444 KT-LVAAVEKDGQSFL 458
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/312 (18%), Positives = 113/312 (36%), Gaps = 80/312 (25%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ ++D + L L+ H V+++ ++ G L SGS D+ V +W + G H ++G
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH 202
Query: 182 GGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS 241
++I + K K ++ +GS
Sbjct: 203 NSTVR--------------------CLDIVEYKNIK------------------YIVTGS 224
Query: 242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD 301
D+T +W + PKE + VP + G
Sbjct: 225 RDNTLHVWKL-------PKE-------------SSVPDH-----------------GEEH 247
Query: 302 GYARIWTSDGSLKSTLGQHKGPIFALK-WNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
Y ++ + +G +G + +++ + GN ++S D T I+WD A +C S
Sbjct: 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 361 FHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLL 419
H+ + S S D I + L + + + + +GHT V ++ + L
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FL 365
Query: 420 ASCSDDMTLKIW 431
S + D +++ W
Sbjct: 366 VSAAADGSIRGW 377
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 552
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 553 DKPVKSFEGHTT 564
FEGH +
Sbjct: 193 GCCTHVFEGHNS 204
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
E+ ++ + +DW++ G+ LA + D +W++ L Q + P I ++ W K
Sbjct: 21 EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 78
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
GNY+ +WD + + + HSA + W S +S S HIH +
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 137
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
++ V + GH+ EV ++W P G LAS +D + +W
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 177
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
P+ P ++ T QH+G + A+ W + +L+ G D+ IW+
Sbjct: 178 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227
Query: 509 AASGQCEQQFSFHS 522
SG C HS
Sbjct: 228 VCSGACLSAVDAHS 241
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 118/299 (39%), Gaps = 42/299 (14%)
Query: 152 GKFLASGSFDKCVHIWSARTG---QLVHSYKGTGGIFEVCWNSRGT-PPNPPESMEVDAS 207
G LA + D V++WSA +G QL+ + I V W G S EV
Sbjct: 36 GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 208 IEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLR 267
Q + + H + V +WN L+SGS S ++++
Sbjct: 95 DVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGS-----------RSGHIHHHDVRVAEH 141
Query: 268 HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS---DGSLK--STLGQHKG 322
H + G +++V L W +G LA+G D +W S +G T QH+G
Sbjct: 142 HVATLSG----HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 197
Query: 323 PIFALKWNKRGNYILSAG---VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ------- 372
+ A+ W + +L+ G D+ IW+ SG C HS + W
Sbjct: 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI 256
Query: 373 SNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
S FA + + K + V +GHT+ V ++ P G +AS + D TL++W
Sbjct: 257 SGHGFA----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 117/300 (39%), Gaps = 83/300 (27%)
Query: 229 AWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW 288
AW ++LA G+ + ++WD+ + K L+ + H + V SL W
Sbjct: 74 AWIKEGNYLAVGTSSAEVQLWDV-----QQQKRLRNMTSH-----------SARVGSLSW 117
Query: 289 NNNGSFLATGSYDGYARIWTSDGSLK----STLGQHKGPIFALKWNKRGNYILSAGVDKT 344
N+ L++GS G+ I D + +TL H + L+W G ++ S G D
Sbjct: 118 NSY--ILSSGSRSGH--IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 345 TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 404
+W +A G+ W P+++F H
Sbjct: 174 VNVWPSAPGEG--------------GW-----------------------VPLQTFTQHQ 196
Query: 405 NEVNAIKWDP-QGLLLASC--SDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET 461
V A+ W P Q +LA+ + D ++IW++ C+ + AH+ ++ +I WSP E
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKEL 255
Query: 462 SN--------------PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 507
+ P M+ + LK H + +L + G + SA D+T +W
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKG----HTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 93/212 (43%), Gaps = 18/212 (8%)
Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVK--SFEGHTNEVNAIKWDPQGLLLASCSDDM 426
VDW S A + D +++ S ++ E ++++ W +G LA +
Sbjct: 31 VDWSSGNVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSP----TGPETSNPNMSLIFILK---STLGQH 479
+++W + + + ++ +H+ + ++ W+ +G + + + + + + +TL H
Sbjct: 90 EVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE----QQFSFHSAPALDV---DWQS 532
+ L+W G ++ S G D +W +A G+ Q F+ H V WQS
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 533 NT-SFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
N + ++D+HI + + S + + + H+
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 63/222 (28%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL+ H++ V + ++PDG+ LASG D V++W S G GG W
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP--------SAPGEGG-----W----- 186
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVK-DFLASGSG--DSTARIWDM 251
+P T+ H+ V AW P + + LA+G G D RIW++
Sbjct: 187 ---------------VPLQTFTQ---HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR----IW 307
C+S V ++ V S+ W+ + L +G G+A+ IW
Sbjct: 229 CSGA-------------CLSA----VDAHSQVCSILWSPHYKELISG--HGFAQNQLVIW 269
Query: 308 TSDGSLK-STLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
K + L H + +L + G + SA D+T +W
Sbjct: 270 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW 167
L +W + L HT V S+ SPDG +AS + D+ + +W
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
E+ ++ + +DW++ G+ LA + D +W++ L Q + P I ++ W K
Sbjct: 112 EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 169
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
GNY+ +WD + + + HSA + W S +S S HIH +
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 228
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
++ V + GH+ EV ++W P G LAS +D + +W
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 268
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
P+ P ++ T QH+G + A+ W + +L+ G D+ IW+
Sbjct: 269 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 318
Query: 509 AASGQCEQQFSFHS 522
SG C HS
Sbjct: 319 VCSGACLSAVDAHS 332
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 111/316 (35%), Gaps = 61/316 (19%)
Query: 124 LWDVERGECLNTLTRHT--EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG- 180
LW G+ L L E + SVA+ +G +LA G+ V +W + + + +
Sbjct: 140 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 199
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
+ + + WNS + + + L GH EV W P LASG
Sbjct: 200 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 241 SGDSTARIWDMTDSTKKDPKE-----LQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
D+ +W P E LQ +H +G K V W +N
Sbjct: 260 GNDNLVNVWPSA------PGEGGWVPLQTFTQH---QGAV-----KAVAWCPWQSNVLAT 305
Query: 296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 355
G+ D + RIW + +G + + DA S C
Sbjct: 306 GGGTSDRHIRIWN----------------------------VCSGACLSAV--DAHSQVC 335
Query: 356 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
+S H + S FA + + K + V +GHT+ V ++ P
Sbjct: 336 SILWSPHYKELI-----SGHGFA----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 386
Query: 416 GLLLASCSDDMTLKIW 431
G +AS + D TL++W
Sbjct: 387 GATVASAAADETLRLW 402
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW 167
L +W + L HT V S+ SPDG +AS + D+ + +W
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWNKR 332
E+ ++ + +DW++ G+ LA + D +W++ L Q + P I ++ W K
Sbjct: 101 EIRNDYYLNLVDWSS-GNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE 158
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
GNY+ +WD + + + HSA + W S +S S HIH +
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI-LSSGSRSGHIHHHDVR 217
Query: 393 -SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
++ V + GH+ EV ++W P G LAS +D + +W
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-------------------- 257
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---VDKTTIIWD 508
P+ P ++ T QH+G + A+ W + +L+ G D+ IW+
Sbjct: 258 ----PSAPGEGG------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 307
Query: 509 AASGQCEQQFSFHS 522
SG C HS
Sbjct: 308 VCSGACLSAVDAHS 321
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 111/316 (35%), Gaps = 61/316 (19%)
Query: 124 LWDVERGECLNTLTRHT--EPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG- 180
LW G+ L L E + SVA+ +G +LA G+ V +W + + + +
Sbjct: 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 188
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
+ + + WNS + + + L GH EV W P LASG
Sbjct: 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 241 SGDSTARIWDMTDSTKKDPKE-----LQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFL 295
D+ +W P E LQ +H +G K V W +N
Sbjct: 249 GNDNLVNVWPSA------PGEGGWVPLQTFTQH---QGAV-----KAVAWCPWQSNVLAT 294
Query: 296 ATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 355
G+ D + RIW + +G + + DA S C
Sbjct: 295 GGGTSDRHIRIWN----------------------------VCSGACLSAV--DAHSQVC 324
Query: 356 EQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
+S H + S FA + + K + V +GHT+ V ++ P
Sbjct: 325 SILWSPHYKELI-----SGHGFA----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375
Query: 416 GLLLASCSDDMTLKIW 431
G +AS + D TL++W
Sbjct: 376 GATVASAAADETLRLW 391
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW 167
L +W + L HT V S+ SPDG +AS + D+ + +W
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 31 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + ++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
+++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 106
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG 146
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 147 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNL 225
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHV 547
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 56/317 (17%), Positives = 109/317 (34%), Gaps = 61/317 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 101
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 102 -------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 131 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKMVK 179
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L V F G++ ++ W G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 417 LLLASCSDDMTLKIWSL 433
L + D +++W +
Sbjct: 299 QTLFAGYTDNVIRVWQV 315
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 48/188 (25%)
Query: 379 SCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D+ + KL D PV+SF+GH++ V G S S D TL++W +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
TG F+ HK + ++ +K+ +
Sbjct: 95 ----------------------ATGETYQR------FV------GHKSDVMSVDIDKKAS 120
Query: 494 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLH 551
I+S DKT +W GQC H+ DW S + D + +
Sbjct: 121 MIISGSRDKTIKVW-TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAG 173
Query: 552 SDKPVKSF 559
+DK VK++
Sbjct: 174 NDKMVKAW 181
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 50/183 (27%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
W++ + + H + ++ SPDG +AS D + +W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN---------------- 224
Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
+ KA + + EVF A++P + +LA+ + +
Sbjct: 225 -------------------------LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T 258
Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
+++ + DP+ L LR + G + SL W+ +G L G D
Sbjct: 259 GIKVFSL------DPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 305 RIW 307
R+W
Sbjct: 311 RVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 31 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 36/312 (11%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + ++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
+++ H I L + G I SAG D ++W+ A+ + S + +
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 245
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTTGQLVHSYKGTGGIFEVCWNSRG 586
N + + +T I V L V F G++ H+ + W++ G
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA-------VSLAWSADG 298
Query: 587 DKVGASASDGSV 598
+ A +D +
Sbjct: 299 QTLFAGYTDNVI 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 106
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG 146
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 147 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNL 225
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 56/317 (17%), Positives = 109/317 (34%), Gaps = 61/317 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 101
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 102 -------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 131 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKMVK 179
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L V F G++ ++ W G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 417 LLLASCSDDMTLKIWSL 433
L + D +++W +
Sbjct: 299 QTLFAGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 50/183 (27%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
W++ + + H + ++ SPDG +AS D + +W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN---------------- 224
Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
+ KA + + EVF A++P + +LA+ + +
Sbjct: 225 -------------------------LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T 258
Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
+++ + DP+ L LR + G + SL W+ +G L G D
Sbjct: 259 GIKVFSL------DPQYLVDDLRPEFA--GYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 305 RIW 307
R+W
Sbjct: 311 RVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 31 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + ++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
+++ H I L + G I SAG D ++W+ A+ + S + +
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 245
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG 590
N + + +T I V L V G +S + W++ G +
Sbjct: 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG---YSKAAEPHAVSLAWSADGQTLF 302
Query: 591 ASASDGSV 598
A +D +
Sbjct: 303 AGYTDNVI 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 106
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG 146
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 147 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNL 225
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 56/317 (17%), Positives = 109/317 (34%), Gaps = 61/317 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 101
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 102 -------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 131 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKMVK 179
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L V F G++ ++ W G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 417 LLLASCSDDMTLKIWSL 433
L + D +++W +
Sbjct: 299 QTLFAGYTDNVIRVWQV 315
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 50/183 (27%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
W++ + + H + ++ SPDG +AS D + +W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN---------------- 224
Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
+ KA + + EVF A++P + +LA+ + +
Sbjct: 225 -------------------------LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T 258
Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
+++ + DP+ L LR + G + SL W+ +G L G D
Sbjct: 259 GIKVFSL------DPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 305 RIW 307
R+W
Sbjct: 311 RVW 313
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 44/291 (15%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
+ SG D+T +IWD K+ E + +L G T V L ++ +
Sbjct: 146 IVSGLRDNTIKIWD------KNTLECKRIL-----TGHT-----GSVLCLQYDER--VII 187
Query: 297 TGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-- 353
TGS D R+W + G + +TL H + L++N +++ D++ +WD AS
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD 245
Query: 354 -QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW 412
+ H A VD+ + S S D+ I V + + V++ GH + +++
Sbjct: 246 ITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETS---------- 462
+ L+ S S D T+++W ++ C+ L+ H + + I++ +
Sbjct: 305 RDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Query: 463 -----NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
+P + TL +H G +F L++++ I+S+ D T +IWD
Sbjct: 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 411
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 47/259 (18%)
Query: 267 RHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDG-SLKSTLGQHKGPIF 325
RH + + ++K V L +++ + +G D +IW + K L H G +
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 177
Query: 326 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQH 385
L++++R I++ D T +WD +G+ H L + + +N +CS D+
Sbjct: 178 CLQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRS 234
Query: 386 IHVCKLHSDKPV---KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL 442
I V + S + + GH VN + +D + + S S D T+K+W+ V L
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 443 QAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK 502
H + I +++ R ++S D
Sbjct: 293 NGHKRGIACLQY------------------------------------RDRLVVSGSSDN 316
Query: 503 TTIIWDAASGQCEQQFSFH 521
T +WD G C + H
Sbjct: 317 TIRLWDIECGACLRVLEGH 335
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 39/243 (16%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T+ +WDV GE LNTL H E V + F + + + S D+ + +W + + +
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLI----GHESEVFICAWNPVKDF 236
G N S D +I++ + + + GH+ + +
Sbjct: 252 LVG-HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRL 308
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
+ SGS D+T R+WD+ E LR + +G E+ V + ++N +
Sbjct: 309 VVSGSSDNTIRLWDI---------ECGACLR--VLEGHEEL-----VRCIRFDNKR--IV 350
Query: 297 TGSYDGYARIWTSDGSLK----------STLGQHKGPIFALKWNKRGNYILSAGVDKTTI 346
+G+YDG ++W +L TL +H G +F L++++ I+S+ D T +
Sbjct: 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTIL 408
Query: 347 IWD 349
IWD
Sbjct: 409 IWD 411
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
K L H G + L++++R I++ D T +WD +G+ H L + + +
Sbjct: 166 KRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-N 222
Query: 533 NTSFASCSTDQHIHV 547
N +CS D+ I V
Sbjct: 223 NGMMVTCSKDRSIAV 237
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 31 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L ++ L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + ++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
+++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 106
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 227 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG 146
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 147 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNL 225
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHV 547
G Y LSA DKT +WD A+G+ Q+F H + + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 56/315 (17%), Positives = 108/315 (34%), Gaps = 61/315 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 101
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 102 -------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 131 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKMVK 179
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L V F G++ ++ W G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 417 LLLASCSDDMTLKIW 431
L + D +++W
Sbjct: 299 QTLFAGYTDNVIRVW 313
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 48/188 (25%)
Query: 379 SCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D+ + KL D PV+SF+GH++ V G S S D TL++W +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
TG F+ HK + ++ +K+ +
Sbjct: 95 ----------------------ATGETYQR------FV------GHKSDVMSVDIDKKAS 120
Query: 494 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLH 551
I+S DKT +W GQC H+ DW S + D + +
Sbjct: 121 MIISGSRDKTIKVW-TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAG 173
Query: 552 SDKPVKSF 559
+DK VK++
Sbjct: 174 NDKMVKAW 181
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 50/183 (27%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
W++ + + H + ++ SPDG +AS D + +W+
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN---------------- 224
Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
+ KA + + EVF A++P + +LA+ + +
Sbjct: 225 -------------------------LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T 258
Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
+++ + DP+ L LR + G + SL W+ +G L G D
Sbjct: 259 GIKVFSL------DPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 305 RIW 307
R+W
Sbjct: 311 RVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 25 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 73
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKG 132
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 133 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L ++ L A + E++++ +SP
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 241
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 28/308 (9%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + ++ S S D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 123 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
+++ H I L + G I SAG D ++W+ A+ + S + +
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAF 239
Query: 531 QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVG 590
N + + +T I V L V G +S + W++ G +
Sbjct: 240 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG---YSKAAEPHAVSLAWSADGQTLF 296
Query: 591 ASASDGSV 598
A +D +
Sbjct: 297 AGYTDNVI 304
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 100
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 221 AKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 269
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 82 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG 140
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 141 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNL 219
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 56/317 (17%), Positives = 109/317 (34%), Gaps = 61/317 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 45 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 95
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 96 -------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 125 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKMVK 173
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D ++W+ A+ + S
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 232
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVK----SFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L V F G++ ++ W G
Sbjct: 233 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 292
Query: 417 LLLASCSDDMTLKIWSL 433
L + D +++W +
Sbjct: 293 QTLFAGYTDNVIRVWQV 309
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/183 (18%), Positives = 65/183 (35%), Gaps = 50/183 (27%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGI 184
W++ + + H + ++ SPDG +AS D + +W+
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN---------------- 218
Query: 185 FEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDS 244
+ KA + + EVF A++P + +LA+ + +
Sbjct: 219 -------------------------LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T 252
Query: 245 TARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYA 304
+++ + DP+ L LR + G + SL W+ +G L G D
Sbjct: 253 GIKVFSL------DPQYLVDDLRPEFA--GYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 305 RIW 307
R+W
Sbjct: 305 RVW 307
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 130/311 (41%), Gaps = 47/311 (15%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
+T L + +N ++ TG+ D R++ S + L H G ++ALK+ G ++S
Sbjct: 125 ITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGST 181
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPA--LD-VDWQSNTSFASCSTDQHIHVCKL------- 391
D+T +WD G C F H++ LD V++++ + S D +HV KL
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 392 ----HSDKP------------VKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
D P V GH V + G ++ S S D TL +W + +
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
Query: 436 DNCVHDLQAHNKEIYTIKWSPTGPE-TSNPNMSLIFI-------LKSTLGQHKGPIFALK 487
C++ L H IY+ + S + I I L TL H + L+
Sbjct: 300 XKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLR 359
Query: 488 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSNTSFASCSTDQHI 545
+ + +++SA D + WDA ++FS+H + A+ + S+ S S +Q
Sbjct: 360 LSDK--FLVSAAADGSIRGWDA--NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-F 414
Query: 546 HVCKLHSDKPV 556
++ L S K V
Sbjct: 415 NIYNLRSGKLV 425
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 16/233 (6%)
Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLL--LASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYT 451
FEGH + V + + + + S D TL +W L K++ V D H +E
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD---HGEE--- 246
Query: 452 IKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 511
P T N + +L+ H + + + GN ++S D T I+WD A
Sbjct: 247 -HDYPLVFHTPEENPYFVGVLRG----HXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 512 GQCEQQFSFHSAPALDVDW-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 563
+C S H+ + S S D I + L + + + +GHT
Sbjct: 300 XKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL +WDV + +CL L+ HT+ +YS + + K S S D + IW G+L ++ +G
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQG 350
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 116/282 (41%), Gaps = 45/282 (15%)
Query: 121 TLPLWDVERGECLNTLTRHTEPV--YSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T+ +WD+++G C + H V + + K++ +GS D +H+W V +
Sbjct: 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLA 238
G + + ++ TP P + V L GH + V + + + +
Sbjct: 244 -GEEHDYPLVFH---TPEENPYFVGV-------------LRGHXASVRTVSGHG--NIVV 284
Query: 239 SGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
SGS D+T +WD+ K L I+ H + S +++ +
Sbjct: 285 SGSYDNTLIVWDVAQX-----KCLYILSGHT-----------DRIYSTIYDHERKRCISA 328
Query: 299 SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 357
S D RIW +G L TL H + L+ + + +++SA D + WDA +
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA--NDYSR 384
Query: 358 QFSFH--SAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
+FS+H + A+ + S+ S S +Q ++ L S K V
Sbjct: 385 KFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLV 425
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 552
NY+++ DK ++D+ + + Q S H + + S STD+ + V +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192
Query: 553 DKPVKSFEGHTT 564
FEGH +
Sbjct: 193 GCCTHVFEGHNS 204
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+ L S S D T W +T D ++ + +R KG + + + +T+ +G++
Sbjct: 31 NLLLSASRDKTLISWKLT----GDDQKFGVPVRSF--KGHSHIVQDCTLTA-----DGAY 79
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+ S+D R+W + G HK + ++ +K+ + I+S DKT +W G
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKG 138
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLHSDKPVKS-----------F 400
QC H+ DW S + D + + +DK VK+ F
Sbjct: 139 QCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 401 EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH + +N + P G L+AS D + +W+L + L A + E++++ +SP
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSP 247
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 313 LKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
D ++ ++A S S D+ + + + + + + F GH ++V ++ D + + S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLI---------------F 470
T+K+W++ K C+ L HN + ++ P + + ++++I F
Sbjct: 129 KTIKVWTI-KGQCLATLLGHNDWVSQVRVVPN-EKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 471 ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
+++ H I L + G I SAG D +W+ A+ + S
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 25/231 (10%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V C + S S D T R+WD+ + Q + H
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-----ETYQRFVGH----------- 106
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW--NKRGN--- 334
DV S+D + S + +GS D ++WT G +TL H + ++ N++ +
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 335 -YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHIHVCKLH 392
I+SAG DK W+ Q E F H++ + + T AS D I + L
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQ 443
+ K + +EV ++ + P LA+ + +K++SLD V DL+
Sbjct: 227 AKKAXYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 19/144 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWDV GE H V SV + SGS DK + +W+ + GQ + + G
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLG 146
Query: 181 TGGIFEVCWNSR-GTPPNPPESMEVDASIEIPQSKATK------------LIGHESEVFI 227
W S+ PN + I K K IGH S +
Sbjct: 147 HND-----WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINT 201
Query: 228 CAWNPVKDFLASGSGDSTARIWDM 251
+P +AS D +W++
Sbjct: 202 LTASPDGTLIASAGKDGEIXLWNL 225
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 29/200 (14%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKF------LASGSFDKCVHIWSARTGQL 174
T+ +W + +G+CL TL H + V V P+ K + S DK V W+ Q+
Sbjct: 130 TIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 175 VHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE-------IPQSKATKLIGHESEVFI 227
+ G N +P ++ A + + KA + + EVF
Sbjct: 189 EADFIGHNS------NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS 242
Query: 228 CAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLD 287
A++P + +LA+ + + +++ + DP+ L LR + G + SL
Sbjct: 243 LAFSPNRYWLAAATA-TGIKVFSL------DPQYLVDDLRPEFA--GYSKAAEPHAVSLA 293
Query: 288 WNNNGSFLATGSYDGYARIW 307
W+ +G L G D R+W
Sbjct: 294 WSADGQTLFAGYTDNVIRVW 313
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
G Y LSA DKT +WD A+G+ Q+F H + VD S S S D+ I V
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 48/188 (25%)
Query: 379 SCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D+ + KL D PV+SF+GH++ V G S S D TL++W +
Sbjct: 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
TG F+ HK + ++ +K+ +
Sbjct: 95 ----------------------ATGETYQR------FV------GHKSDVXSVDIDKKAS 120
Query: 494 YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA--SCSTDQHIHVCKLH 551
I+S DKT +W GQC H+ DW S + D + +
Sbjct: 121 XIISGSRDKTIKVW-TIKGQCLATLLGHN------DWVSQVRVVPNEKADDDSVTIISAG 173
Query: 552 SDKPVKSF 559
+DK VK++
Sbjct: 174 NDKXVKAW 181
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/321 (17%), Positives = 109/321 (33%), Gaps = 61/321 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D + G + + H+ V + DG + S S+DK + +W TG+ +Y+
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE---TYQ------ 101
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH+S+V + + SGS D T
Sbjct: 102 -------------------------------RFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W + L +L H V N+ +++ + + D +
Sbjct: 131 IKVWTIKGQC------LATLLGHNDWVSQVRVVPNEKA-----DDDSVTIISAGNDKXVK 179
Query: 306 IWTSDG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
W + +++ H I L + G I SAG D +W+ A+ + S
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD- 238
Query: 365 PALDVDWQSNTSFASCSTDQHIHVCKLH----SDKPVKSFEGHTNEVN----AIKWDPQG 416
+ + N + + +T I V L D F G++ ++ W G
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 417 LLLASCSDDMTLKIWSLDKDN 437
L + D +++W + N
Sbjct: 299 QTLFAGYTDNVIRVWQVXTAN 319
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 469 IFILKSTLGQHKGPIFALKWNK-RGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHS 522
+ +L+ TL H G + +L + + N +LSA DKT I W D G + F HS
Sbjct: 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 523 APALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGH 562
D ++ ++A S S D+ + + + + + + F GH
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 63/315 (20%)
Query: 136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP 195
LT H V +A S + F S S+DK + +W RTG +YK
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT---TYK---------------- 112
Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
+ +GH+SEV+ A++P + S + ++W++
Sbjct: 113 ---------------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151
Query: 256 K--KDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL 313
K KE C+ +NK V + A+ +DG ++W ++ +
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANK-VQPF-----APYFASVGWDGRLKVWNTNFQI 205
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQ 372
+ T H+ + L + G YI + G DK +IWD + Q+ F + ++ + +
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFN 264
Query: 373 SNTSFASCSTDQHIHVCKL--HSDKPVKSFE-----------GHTNEVNAIKWDPQGLLL 419
+ + TDQ + + L S PV + E G + ++ W+ G L
Sbjct: 265 PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324
Query: 420 ASCSDDMTLKIWSLD 434
+ D ++ +S +
Sbjct: 325 FAGFTDGVIRTFSFE 339
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 122/304 (40%), Gaps = 31/304 (10%)
Query: 325 FALKWNKRGNYILSAGVDKTTIIW-------DAASGQCEQQFSFHSAPALDVDWQSNTSF 377
F+ K N+ ++S DKT +IW + G + + H+ D+ F
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 378 A-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL--D 434
A S S D+ + + L + K F GH +EV ++ + P + S + +K+W++ +
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 435 KDNCVHDLQAHNKEIYTIKWSPTGPETSN-----PNMSLI------------FILKSTLG 477
+ + H+ + +++SP + P + + F ++ T
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK 210
Query: 478 QHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-VDWQSNTSF 536
H+ + L + G YI + G DK +IWD + Q+ F + ++ + + +
Sbjct: 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFNPKLQW 269
Query: 537 ASCSTDQHIHVCKL--HSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASAS 594
+ TDQ + + L S PV + E + + WN+ G K+ A +
Sbjct: 270 VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329
Query: 595 DGSV 598
DG +
Sbjct: 330 DGVI 333
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
TL LWD+ G H VYSVAFSPD + + S ++ + +W+
Sbjct: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 44/178 (24%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
T H V ++ SP+GK++A+G DK + IW I + + R
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD---------------ILNLTYPQR-- 250
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
E DA I Q A+NP ++A G+ D +I+++
Sbjct: 251 --------EFDAGSTINQ---------------IAFNPKLQWVAVGT-DQGVKIFNLMTQ 286
Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
+K + + I+K + N TSL WN G L G DG R ++ + S
Sbjct: 287 SK---APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 119/270 (44%), Gaps = 25/270 (9%)
Query: 313 LKSTLGQHKGPIFALKWN-KRGNYILSAGVDKTTIIW-----DAASGQCEQQFSFHSAPA 366
LK T+ H + A+ + I+SA DK+ I+W D A G +++ + HS
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 367 LDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDD 425
DV S+ FA S S D + + L + + F GHT +V ++ + + S S D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 426 MTLKIWSLDKDNCVHDL----QAHNKEIYTIKWSPTGPETSNPNMS---LIFI------- 471
T+K+W+ + C + + + H + +++SP + + + S + +
Sbjct: 494 RTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 531
L+STL H G + + + G+ S G D ++WD A G+ + +S + +
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCF 610
Query: 532 SNTSFASCSTDQH-IHVCKLHSDKPVKSFE 560
S + C+ +H I + L S V+ +
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
D + S S D + +W +T KD K + R + V + +++G F
Sbjct: 396 DIIVSASRDKSIILWKLT----KDDKAYGVAQRRLTGH-------SHFVEDVVLSSDGQF 444
Query: 295 LATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 353
+GS+DG R+W + G H + ++ ++ I+SA D+T +W+ G
Sbjct: 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-G 503
Query: 354 QCEQQFSFHSAPALDVDWQSNTSFA---------SCSTDQHIHVCKLHSDKPVKSFEGHT 404
+C +++ DW S F+ S S D+ + V L + K + GHT
Sbjct: 504 EC--KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
V+ + P G L AS D + +W L + ++ L+A N I+ + +SP
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSP 612
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 49/192 (25%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T+ +W++ + +TL HT V +VA SPDG ASG D V +W G+ ++S +
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
I +C++ PN ++CA
Sbjct: 602 NSVIHALCFS-----PN--------------------------RYWLCA----------- 619
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKD-----VTSLDWNNNGSFL 295
+ + +IWD+ +K ++L++ L+ K P+ TSL+W+ +GS L
Sbjct: 620 ATEHGIKIWDL--ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677
Query: 296 ATGSYDGYARIW 307
+G DG R+W
Sbjct: 678 FSGYTDGVIRVW 689
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 98/278 (35%), Gaps = 55/278 (19%)
Query: 126 DVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIF 185
D G LT H+ V V S DG+F SGS+D + +W G
Sbjct: 416 DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG------------- 462
Query: 186 EVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDST 245
+ +GH +V A++ + S S D T
Sbjct: 463 ---------------------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYAR 305
++W+ K + IS+GG N + + S+D +
Sbjct: 496 IKLWNTLGECK-----------YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 306 IWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA 364
+W S+ L+STL H G + + + G+ S G D ++WD A G+ + +S +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEAN 602
Query: 365 PALDVDWQSNTSFASCSTDQH-IHVCKLHSDKPVKSFE 401
+ S + C+ +H I + L S V+ +
Sbjct: 603 SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK 640
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGV 341
V+ + +NNG+F + S+D R+W +G + H + ++ ++ I+S G
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 342 DKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA---------SCSTDQHIHVCKLH 392
D +W+ G+C S + DW S F+ S D + V L
Sbjct: 130 DNALRVWNV-KGECMHTLSRGA----HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
+ + V +GHTN V ++ P G L AS D ++W L K + ++ A I I
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQI 243
Query: 453 KWSP 456
+SP
Sbjct: 244 CFSP 247
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 62/236 (26%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
+L LW+++ G+C HT+ V SVAFSPD + + SG D + +W+ + G+ +H+
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTL-- 146
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIP------------------QSKATKLIGHE 222
SRG + + S++ P T L GH
Sbjct: 147 ----------SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 223 SEVFICAWNPVKDFLASGSGDSTARIWDMTD---------------------------ST 255
+ V +P AS D AR+WD+T +T
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAAT 256
Query: 256 KKDPKELQIVLRHCISKGGTEVPSNKDV----TSLDWNNNGSFLATGSYDGYARIW 307
+K + + + I + E +K + S+ W+ +GS L +G D R+W
Sbjct: 257 EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/311 (19%), Positives = 115/311 (36%), Gaps = 66/311 (21%)
Query: 136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTP 195
L H+ V VA S +G F S S+D + +W+ + GQ +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY------------------- 103
Query: 196 PNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDST 255
K +GH +V A++P + SG D+ R+W++
Sbjct: 104 ---------------------KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 256 KKDPKELQIVLRHCISKGGTE--VPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGS 312
H +S+G V + SLD + +G +D ++W + G
Sbjct: 143 M-----------HTLSRGAHTDWVSCVRFSPSLD----APVIVSGGWDNLVKVWDLATGR 187
Query: 313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
L + L H + ++ + G+ S+ D +WD G+ + + AP + +
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA-AGAPINQICFS 246
Query: 373 SNTSFASCSTDQHIHVCKLHS-DKPVKSFEGHTN------EVNAIKWDPQGLLLASCSDD 425
N + +T++ I + L + D V+ H E +I W G L S D
Sbjct: 247 PNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTD 306
Query: 426 MTLKIWSLDKD 436
+++W + ++
Sbjct: 307 NVIRVWGVSEN 317
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ-SNT 375
L H + + + GN+ +SA D + +W+ +GQC+ +F H+ L V + N
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 376 SFASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDP--QGLLLASCSDDMTLKIWS 432
S D + V + + S HT+ V+ +++ P ++ S D +K+W
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTG 458
L V DL+ H + ++ SP G
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDG 208
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ +WD+ G + L HT V SV SPDG AS D +W G+ +
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Query: 182 GGIFEVCWN----------SRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN 231
I ++C++ +G E+ ++ + P+ + +K I E AW+
Sbjct: 238 APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELA-PEHQGSKKI--VPECVSIAWS 294
Query: 232 PVKDFLASGSGDSTARIWDMTDS 254
L SG D+ R+W ++++
Sbjct: 295 ADGSTLYSGYTDNVIRVWGVSEN 317
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 383 DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL 442
D+H C P + EGH+ V+ + G S S D +L++W+L C +
Sbjct: 48 DRHSSECSY--GLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF 105
Query: 443 QAHNKEIYTIKWSPTGPET---SNPNMSLIFILKS------TLGQHKGPIFALKWNKR-- 491
H K++ ++ +SP + N ++ +K + G H + ++++
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 492 GNYILSAGVDKTTIIWDAASGQCEQQFSFHS 522
I+S G D +WD A+G+ H+
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 476 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 528
L H + + + GN+ +SA D + +W+ +GQC+ +F H+ L V
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSV 115
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T LWD+E G+ T T HT V S++ +PD + SG+ D +W R G ++ G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
I +C+ G N + DA+ + +A + L+ + + IC V
Sbjct: 236 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 292
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
L +G D +W D+ K D + G + V+ L ++G
Sbjct: 293 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 336
Query: 294 FLATGSYDGYARIW 307
+ATGS+D + +IW
Sbjct: 337 AVATGSWDSFLKIW 350
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 121/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL H +Y++ + D + L S S D + IW + T VH+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 103
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
IP S V CA+ P +++A G D+ I+++
Sbjct: 104 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGS 312
+ + +EL G T S LD N + T S D +W +
Sbjct: 141 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 185
Query: 313 LKSTLGQ-HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
++T H G + +L +S D + +WD G C Q F+ H + + +
Sbjct: 186 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 245
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
N +FA+ S D + L +D+ + ++ H N + ++ + G LL + DD
Sbjct: 246 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 304
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+W K + L H+ + + + G
Sbjct: 305 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
+ ++ +C +I C +++ K + GHT ++ ++ ++ S S D
Sbjct: 119 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 175
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ H ++ ++ +P + +F+
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 211
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
S D + +WD G C Q F+ H + + + N +FA+ S D
Sbjct: 212 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 261
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ + ++
Sbjct: 262 RLFDLRADQELMTY 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
+ ++ GH ++ A+ W LL S S D L IW N VH + + + T +
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 116
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
+P+G + N+ I+ LK+ L H G + ++ + S+G D
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 175
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
T +WD +GQ F+ H+ + + +T F S + D + + ++F G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 562 H 562
H
Sbjct: 236 H 236
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 30/240 (12%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ----LVHS 177
L +WD ++ + + V + A++P G ++A G D I++ +T + +
Sbjct: 90 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 149
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPV 233
G G C R N + D + + + T GH +V + P
Sbjct: 150 LAGHTGYLSCC---RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 206
Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
SG+ D++A++WD+ + + T D+ ++ + NG+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICFFPNGN 250
Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL---KWNKRGNYILSAGVDKTTIIWDA 350
ATGS D R++ + H I + ++K G +L+ D +WDA
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-----IFALKWNKRGNYIL 337
+ ++ W + L + S DG IW S +T H P + + GNY+
Sbjct: 69 IYAMHWGTDSRLLVSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 338 SAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
G+D I++ + + ++ + H+ + + + S D + + +
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 184
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ +F GHT +V ++ P L S + D + K+W + + C H +I I
Sbjct: 185 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Query: 454 WSPTG---PETSNPNMSLIFILKS----TLGQHKGPIFAL---KWNKRGNYILSAGVDKT 503
+ P G S+ +F L++ H I + ++K G +L+ D
Sbjct: 245 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 304
Query: 504 TIIWDA 509
+WDA
Sbjct: 305 CNVWDA 310
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 533 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC 581
+ ++ +C +I C +++ +K+ EG+ ++ G G C
Sbjct: 119 SGNYVACGGLDNI--CSIYN---LKTREGNV--RVSRELAGHTGYLSCC 160
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
+WD + + L H V + + DG +A+GS+D + IW+
Sbjct: 307 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T LWD+E G+ T T HT V S++ +PD + SG+ D +W R G ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
I +C+ G N + DA+ + +A + L+ + + IC V
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
L +G D +W D+ K D + G + V+ L ++G
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
+ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL H +Y++ + D + L S S D + IW + T VH+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
IP S V CA+ P +++A G D+ I+++
Sbjct: 93 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
+ + +EL G T S LD N + T S D +W G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+T H G + +L +S D + +WD G C Q F+ H + + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
N +FA+ S D + L +D+ + ++ H N + ++ + G LL + DD
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+W K + L H+ + + + G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
+ ++ +C +I C +++ K + GHT ++ ++ ++ S S D
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ H ++ ++ +P + +F+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
S D + +WD G C Q F+ H + + + N +FA+ S D
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
+ ++ GH ++ A+ W LL S S D L IW N VH + + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
+P+G + N+ I+ LK+ L H G + ++ + S+G D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
T +WD +GQ F+ H+ + + +T F S + D + + ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
H
Sbjct: 225 H 225
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 30/240 (12%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ----LVHS 177
L +WD ++ + + V + A++P G ++A G D I++ +T + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPV 233
G G C R N + D + + + T GH +V + P
Sbjct: 139 LAGHTGYLSCC---RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
SG+ D++A++WD+ + + T D+ ++ + NG+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICFFPNGN 239
Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL---KWNKRGNYILSAGVDKTTIIWDA 350
ATGS D R++ + H I + ++K G +L+ D +WDA
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-----IFALKWNKRGNYIL 337
+ ++ W + L + S DG IW S +T H P + + GNY+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 338 SAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
G+D I++ + + ++ + H+ + + + S D + + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ +F GHT +V ++ P L S + D + K+W + + C H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 454 WSPTG---PETSNPNMSLIFILKS----TLGQHKGPIFAL---KWNKRGNYILSAGVDKT 503
+ P G S+ +F L++ H I + ++K G +L+ D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 504 TIIWDA 509
+WDA
Sbjct: 294 CNVWDA 299
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 533 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC 581
+ ++ +C +I C +++ +K+ EG+ ++ G G C
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNV--RVSRELAGHTGYLSCC 149
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
+WD + + L H V + + DG +A+GS+D + IW+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T LWD+E G+ T T HT V S++ +PD + SG+ D +W R G ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
I +C+ G N + DA+ + +A + L+ + + IC V
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
L +G D +W D+ K D + G + V+ L ++G
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
+ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL H +Y++ + D + L S S D + IW + T VH+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
IP S V CA+ P +++A G D+ I+++
Sbjct: 93 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
+ + +EL G T S LD N + T S D +W G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+T H G + +L +S D + +WD G C Q F+ H + + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
N +FA+ S D + L +D+ + ++ H N + ++ + G LL + DD
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+W K + L H+ + + + G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
+ ++ +C +I C +++ K + GHT ++ ++ ++ S S D
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ H ++ ++ +P + +F+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
S D + +WD G C Q F+ H + + + N +FA+ S D
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
+ ++ GH ++ A+ W LL S S D L IW N VH + + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
+P+G + N+ I+ LK+ L H G + ++ + S+G D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
T +WD +GQ F+ H+ + + +T F S + D + + ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
H
Sbjct: 225 H 225
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 30/240 (12%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ----LVHS 177
L +WD ++ + + V + A++P G ++A G D I++ +T + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPV 233
G G C R N + D + + + T GH +V + P
Sbjct: 139 LAGHTGYLSCC---RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
SG+ D++A++WD+ + + T D+ ++ + NG+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICFFPNGN 239
Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL---KWNKRGNYILSAGVDKTTIIWDA 350
ATGS D R++ + H I + ++K G +L+ D +WDA
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-----IFALKWNKRGNYIL 337
+ ++ W + L + S DG IW S +T H P + + GNY+
Sbjct: 58 IYAMHWGTDSRLLLSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 338 SAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
G+D I++ + + ++ + H+ + + + S D + + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ +F GHT +V ++ P L S + D + K+W + + C H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 454 WSPTG---PETSNPNMSLIFILKS----TLGQHKGPIFAL---KWNKRGNYILSAGVDKT 503
+ P G S+ +F L++ H I + ++K G +L+ D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 504 TIIWDA 509
+WDA
Sbjct: 294 CNVWDA 299
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
+ TL H I+A+ W +LSA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 533 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC 581
+ ++ +C +I C +++ +K+ EG+ ++ G G C
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNV--RVSRELAGHTGYLSCC 149
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
+WD + + L H V + + DG +A+GS+D + IW+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T LWD+E G+ T T HT V S++ +PD + SG+ D +W R G ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
I +C+ G N + DA+ + +A + L+ + + IC V
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
L +G D +W D+ K D + G + V+ L ++G
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
+ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL H +Y++ + D + L S S D + IW + T VH+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
IP S V CA+ P +++A G D+ I+++
Sbjct: 93 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
+ + +EL G T S LD N + T S D +W G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+T H G + +L +S D + +WD G C Q F+ H + + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
N +FA+ S D + L +D+ + ++ H N + ++ + G LL + DD
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+W K + L H+ + + + G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
+ ++ +C +I C +++ K + GHT ++ ++ ++ S S D
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ H ++ ++ +P + +F+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
S D + +WD G C Q F+ H + + + N +FA+ S D
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
+ ++ GH ++ A+ W LL S S D L IW N VH + + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
+P+G + N+ I+ LK+ L H G + ++ + S+G D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
T +WD +GQ F+ H+ + + +T F S + D + + ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
H
Sbjct: 225 H 225
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 30/240 (12%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ----LVHS 177
L +WD ++ + + V + A++P G ++A G D I++ +T + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPV 233
G G C R N + D + + + T GH +V + P
Sbjct: 139 LAGHTGYLSCC---RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
SG+ D++A++WD+ + + T D+ ++ + NG+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICFFPNGN 239
Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL---KWNKRGNYILSAGVDKTTIIWDA 350
ATGS D R++ + H I + ++K G +L+ D +WDA
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-----IFALKWNKRGNYIL 337
+ ++ W + L + S DG IW S +T H P + + GNY+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 338 SAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
G+D I++ + + ++ + H+ + + + S D + + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ +F GHT +V ++ P L S + D + K+W + + C H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 454 WSPTG---PETSNPNMSLIFILKS----TLGQHKGPIFAL---KWNKRGNYILSAGVDKT 503
+ P G S+ +F L++ H I + ++K G +L+ D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 504 TIIWDA 509
+WDA
Sbjct: 294 CNVWDA 299
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 533 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC 581
+ ++ +C +I C +++ +K+ EG+ ++ G G C
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNV--RVSRELAGHTGYLSCC 149
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
+WD + + L H V + + DG +A+GS+D + IW+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T LWD+E G+ T T HT V S++ +PD + SG+ D +W R G ++ G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 181 -TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK-LIGHESEVFICAWNPVK---- 234
I +C+ G N + DA+ + +A + L+ + + IC V
Sbjct: 225 HESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 235 -DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
L +G D +W D+ K D + G + V+ L ++G
Sbjct: 282 GRLLLAGYDDFNCNVW---DALKAD-------------RAGVLAGHDNRVSCLGVTDDGM 325
Query: 294 FLATGSYDGYARIW 307
+ATGS+D + +IW
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 120/331 (36%), Gaps = 63/331 (19%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
TL H +Y++ + D + L S S D + IW + T VH+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM--T 252
IP S V CA+ P +++A G D+ I+++
Sbjct: 93 ---------------IPL--------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDG 311
+ + +EL G T S LD N + T S D +W G
Sbjct: 130 EGNVRVSREL---------AGHTGYLSC--CRFLDDNQ----IVTSSGDTTCALWDIETG 174
Query: 312 SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 371
+T H G + +L +S D + +WD G C Q F+ H + + +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 372 QSN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTN---EVNAIKWDPQGLLLASCSDDMT 427
N +FA+ S D + L +D+ + ++ H N + ++ + G LL + DD
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 428 LKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+W K + L H+ + + + G
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/254 (17%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 374 NTSFASCSTDQHIHVCKLHSDKP-------VKSFEGHTNEVNAIKWDPQGLLLASCSDDM 426
+ ++ +C +I C +++ K + GHT ++ ++ ++ S S D
Sbjct: 108 SGNYVACGGLDNI--CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDT 164
Query: 427 TLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFAL 486
T +W ++ H ++ ++ +P + +F+
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPD---------TRLFV--------------- 200
Query: 487 KWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSN-TSFASCSTDQHI 545
S D + +WD G C Q F+ H + + + N +FA+ S D
Sbjct: 201 ----------SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 546 HVCKLHSDKPVKSF 559
+ L +D+ + ++
Sbjct: 251 RLFDLRADQELMTY 264
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
+ ++ GH ++ A+ W LL S S D L IW N VH + + + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 455 SPTGPETSN---PNMSLIFILKST---------LGQHKGPIFALKWNKRGNYILSAGVDK 502
+P+G + N+ I+ LK+ L H G + ++ + S+G D
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DT 164
Query: 503 TTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEG 561
T +WD +GQ F+ H+ + + +T F S + D + + ++F G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 562 H 562
H
Sbjct: 225 H 225
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 30/240 (12%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ----LVHS 177
L +WD ++ + + V + A++P G ++A G D I++ +T + +
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEI----PQSKATKLIGHESEVFICAWNPV 233
G G C R N + D + + + T GH +V + P
Sbjct: 139 LAGHTGYLSCC---RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 234 KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
SG+ D++A++WD+ + + T D+ ++ + NG+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICFFPNGN 239
Query: 294 FLATGSYDGYARIWTSDGSLKSTLGQHKGPIFAL---KWNKRGNYILSAGVDKTTIIWDA 350
ATGS D R++ + H I + ++K G +L+ D +WDA
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 283 VTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP-----IFALKWNKRGNYIL 337
+ ++ W + L + S DG IW S +T H P + + GNY+
Sbjct: 58 IYAMHWGTDSRLLVSASQDGKLIIWDS----YTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 338 SAGVDKTTIIWDAASGQ----CEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
G+D I++ + + ++ + H+ + + + S D + + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ +F GHT +V ++ P L S + D + K+W + + C H +I I
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 454 WSPTG---PETSNPNMSLIFILKS----TLGQHKGPIFAL---KWNKRGNYILSAGVDKT 503
+ P G S+ +F L++ H I + ++K G +L+ D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 504 TIIWDA 509
+WDA
Sbjct: 294 CNVWDA 299
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 473 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 532
+ TL H I+A+ W ++SA D IIWD+ + S+ + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 533 NTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVC 581
+ ++ +C +I C +++ +K+ EG+ ++ G G C
Sbjct: 108 SGNYVACGGLDNI--CSIYN---LKTREGNV--RVSRELAGHTGYLSCC 149
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
+WD + + L H V + + DG +A+GS+D + IW+
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW-NKRGNYILSAGVDKTTIIWDAASG 353
+ +GS+D A++W +GSL L H ++ K + N L+A DKT +W +
Sbjct: 117 VISGSWDKTAKVW-KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QND 173
Query: 354 QCEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKW 412
+ + FS H+ + + F SCS D I + H+ ++++EGH + V IK
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKL 233
Query: 413 DPQGLLLASCSDDMTLKIWS 432
P G ++ SC +D T++IWS
Sbjct: 234 LPNGDIV-SCGEDRTVRIWS 252
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 45/235 (19%)
Query: 316 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD--VDWQS 373
TL H+G + +L + + ++S DKT +W G H+A D V S
Sbjct: 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFS 154
Query: 374 NTSFASCSTDQHIHVCKLHSDKPVKSFEG-HTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
F + S D+ I + + +DK +K+F G H + V + G + SCS+D +K+
Sbjct: 155 ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVD 211
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRG 492
+ + + H +Y IK P G
Sbjct: 212 XHTGDVLRTYEGHESFVYCIKLLPNGD--------------------------------- 238
Query: 493 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 547
I+S G D+T IW +G +Q + + VD SN S+D + +
Sbjct: 239 --IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 394 DKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIK 453
+ P+ + GH V ++ + Q ++ S S D T K+W + + V++LQAHN ++ K
Sbjct: 94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149
Query: 454 WSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 513
+ + NK L+A DKT +W + +
Sbjct: 150 -----------------------------VVSFSENK----FLTASADKTIKLW--QNDK 174
Query: 514 CEQQFS-FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGH 562
+ FS H+ + + F SCS D I + H+ ++++EGH
Sbjct: 175 VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH 224
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 42/268 (15%)
Query: 155 LASGSFDKCVHIWSAR---TGQLVHSYKGTGGIFEVCWNSR------GTPPNPPESMEVD 205
+AS S D V +WS G +V Y G G + VC++S G + +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 206 ASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW---------DMTDSTK 256
A+ + LIGH+ V C+ + + SGS D TA++W +++
Sbjct: 90 ATS--GEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV 145
Query: 257 KDPKELQIVLRHCISKGGTEVPS---------------NKDVTSLDWNNNGSFLATGSYD 301
D K + ++ + N V L ++G F++ S D
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISC-SND 204
Query: 302 GYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
G ++ G + T H+ ++ +K G+ I+S G D+T IW +G +Q +
Sbjct: 205 GLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVIT 263
Query: 361 FHSAPALDVDWQSNTSFASCSTDQHIHV 388
+ VD SN S+D + +
Sbjct: 264 LPAISIWSVDCXSNGDIIVGSSDNLVRI 291
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 291 NGSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI- 346
+G + A+G G RIW + + LK+T+ GP+ + W+ I + G +
Sbjct: 70 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129
Query: 347 -IWDAASGQCEQQFSFHSAPALDVDWQSNTSF--ASCSTDQHIHVCKLHSDKPVKSFEGH 403
++ +G + + VD++ + F S S D + + + K +F H
Sbjct: 130 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH 189
Query: 404 TNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSN 463
T V++++++P G L AS D T+ ++ N V + E ++K
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLY-----NGVDGTKTGVFEDDSLK---------- 234
Query: 464 PNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 516
N++ H G +F L W+ G I SA DKT IW+ A+ + E+
Sbjct: 235 -NVA-----------HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 129/351 (36%), Gaps = 64/351 (18%)
Query: 113 NGEEVHRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG 172
NG V+ T+P+ + E T H+ SP G + ASG V IW T
Sbjct: 37 NGTSVY--TVPVGSLTDTEIY---TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD--TT 89
Query: 173 QLVHSYKGTGGIF-----EVCWNSRGTPPNPPESMEVDASIEIPQ-----------SKAT 216
Q H K T +F ++ W+S ES + A E + +
Sbjct: 90 QTTHILKTTIPVFSGPVKDISWDS--------ESKRIAAVGEGRERFGHVFLFDTGTSNG 141
Query: 217 KLIGHESEVFICAWNPVKDF-LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
L G + + P + F + SGS D+T I++ P + + T
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE------GPPFKFK----------ST 185
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS----------DGSLKSTLGQHKGPIF 325
K V S+ +N +GS A+ DG ++ D SLK+ H G +F
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV--AHSGSVF 243
Query: 326 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA---PALDVDWQSNTSFASCST 382
L W+ G I SA DKT IW+ A+ + E+ + L + W + + S S
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISA 302
Query: 383 DQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
+ I+ + GH + A+ G L S + + W +
Sbjct: 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 97/258 (37%), Gaps = 50/258 (19%)
Query: 134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRG 193
+T HT+ V+SV ++PDG AS D + +++ G G+FE
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-------GVFE------- 229
Query: 194 TPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTD 253
D S+ K + H VF W+P +AS S D T +IW++
Sbjct: 230 -----------DDSL--------KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV-- 268
Query: 254 STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GS 312
+T K K + + GT + + + W L + S +G+ + GS
Sbjct: 269 ATLKVEKTIPV---------GTRIEDQQ--LGIIWTKQA--LVSISANGFINFVNPELGS 315
Query: 313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDW 371
+ H I AL + G + SA + WD ++G + F H+ +
Sbjct: 316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 375
Query: 372 QSNTSFASCSTDQHIHVC 389
S + S D H+ V
Sbjct: 376 TSKGDLFTVSWDDHLKVV 393
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/370 (18%), Positives = 125/370 (33%), Gaps = 76/370 (20%)
Query: 221 HESEVFICAWNPVKDFLASGSGDSTARIWDMTDST-------------------KKDPKE 261
H + + +P + ASG RIWD T +T + K
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 262 L-----------QIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYARIWTS 309
+ + L + G + + S+D+ + F + +GS D I+
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 310 DG-SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD 368
KST G+H + ++++N G+ S G D T ++++ G F
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF--------- 228
Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTL 428
D +K+ H+ V + W P G +AS S D T+
Sbjct: 229 ------------------------EDDSLKNV-AHSGSVFGLTWSPDGTKIASASADKTI 263
Query: 429 KIWSLDKDNCVHDLQAHNK---EIYTIKWSPTGPETSNPNMSLIFI------LKSTLGQH 479
KIW++ + + + I W+ + + N + F+ + H
Sbjct: 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH 323
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF-SFHSAPALDVDWQSNTSFAS 538
I AL + G + SA + WD ++G + F H+ + S +
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383
Query: 539 CSTDQHIHVC 548
S D H+ V
Sbjct: 384 VSWDDHLKVV 393
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 38/177 (21%)
Query: 146 VAFSPDGKFLASGSFDKCVHIWS------ARTGQLVH-------SYKGTGGIFEVCWNSR 192
VA S D +F+A G D VH++ + +VH ++ G SR
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 193 GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT 252
P V + E+ + + H ++V +W+P LA+GS D++ +W+M
Sbjct: 514 KVIP-----YSVANNFELAHTNSWTF--HTAKVACVSWSPDNVRLATGSLDNSVIVWNM- 565
Query: 253 DSTKKDPKELQIVLR--HCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW 307
P + I+++ H +S V S+ W N + ++ G D + W
Sbjct: 566 ----NKPSDHPIIIKGAHAMSS----------VNSVIWLNETTIVSAGQ-DSNIKFW 607
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 134 NTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW 167
N+ T HT V V++SPD LA+GS D V +W
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 40/163 (24%)
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQ--HKGPIFALKWNKR 332
TEVP + + + + +N+ F+A G D ++ G+ S + H I ++ ++
Sbjct: 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 502
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
G ++++ + I + A+ +F T+
Sbjct: 503 GAFLVATDQSRKVIPYSVAN-----------------------NFELAHTN--------- 530
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
S+ HT +V + W P + LA+ S D ++ +W+++K
Sbjct: 531 ------SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 36/318 (11%)
Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
L GH V A P D + S S D T +W +T +D I R +G +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RDETNYGIPQRAL--RGHSH 87
Query: 277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNY 335
S+ ++S +G F +GS+DG R+W + G+ H + ++ ++
Sbjct: 88 FVSDVVISS-----DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 336 ILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCK 390
I+S DKT +W+ G C+ Q HS V + N+S SC D+ + V
Sbjct: 143 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY 450
L + K + GHT +N + P G L AS D +W L++ ++ L + I
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-IN 260
Query: 451 TIKWSP--------TGPETSNPNMSLIFILK-------STLGQHKGP-IFALKWNKRGNY 494
+ +SP TGP ++ I+ ST + + P +L W+ G
Sbjct: 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 495 ILSAGVDKTTIIWDAASG 512
+ + D +W G
Sbjct: 321 LFAGYTDNLVRVWQVTIG 338
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 303 YARIWTSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCE 356
+ + T +L+ TL H G + + + + ILSA DKT I+W + G +
Sbjct: 20 FQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ 79
Query: 357 QQFSFHSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ 415
+ HS DV S+ FA S S D + + L + + F GHT +V ++ +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQ--AHNKEIYTIKWSPTGPETSNPNM------S 467
+ S S D T+K+W+ C + +Q +H++ + +++SP +SNP +
Sbjct: 140 NRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDK 195
Query: 468 LIFI-------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 513
L+ + LK+ H G + + + G+ S G D ++WD G+
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWD+ G HT+ V SVAFS D + + SGS DK + +W+
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 181 TGGIFEVCWNSRGTPPNP-PESMEVDASIEIPQSKATKL----IGHESEVFICAWNPVKD 235
+ + C NP S D +++ KL IGH + +P
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 236 FLASGSGDSTARIWDMTD 253
ASG D A +WD+ +
Sbjct: 229 LCASGGKDGQAMLWDLNE 246
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 65/243 (26%)
Query: 121 TLPLWDVERGEC-----LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +W + R E L H+ V V S DG+F SGS+D + +W TG
Sbjct: 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--- 118
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD 235
+ + +GH +V A++
Sbjct: 119 -------------------------------------TTTRRFVGHTKDVLSVAFSSDNR 141
Query: 236 FLASGSGDSTARIWD---MTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG 292
+ SGS D T ++W+ + T +D + V C+ N++
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV--SCV--------------RFSPNSSN 185
Query: 293 SFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 351
+ + +D ++W ++ LK+ H G + + + G+ S G D ++WD
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 352 SGQ 354
G+
Sbjct: 246 EGK 248
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ +W++ + HT + +V SPDG ASG D +W G+ +++ G
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 182 GGIFEVC------WNSRGTPPNPPESMEVDASIEIPQSK----ATKLIGHESEVFICAWN 231
I +C W T P+ + +++ I + + K +T + AW+
Sbjct: 257 DIINALCFSPNRYWLCAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315
Query: 232 PVKDFLASGSGDSTARIWDMTDSTK 256
L +G D+ R+W +T T+
Sbjct: 316 ADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 45/195 (23%)
Query: 379 SCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D+ I + KL D+ P ++ GH++ V+ + G S S D TL++W L
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
H K++ ++ +S +
Sbjct: 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQ--------------------------------- 142
Query: 494 YILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVC 548
I+S DKT +W+ G C+ Q HS V + N+S SC D+ + V
Sbjct: 143 -IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 549 KLHSDKPVKSFEGHT 563
L + K + GHT
Sbjct: 201 NLANCKLKTNHIGHT 215
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 36/318 (11%)
Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
L GH V A P D + S S D T +W +T +D I R +G +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT----RDETNYGIPQRAL--RGHSH 64
Query: 277 VPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNY 335
S+ ++S +G F +GS+DG R+W + G+ H + ++ ++
Sbjct: 65 FVSDVVISS-----DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 336 ILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVCK 390
I+S DKT +W+ G C+ Q HS V + N+S SC D+ + V
Sbjct: 120 IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 391 LHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIY 450
L + K + GHT +N + P G L AS D +W L++ ++ L + I
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-IN 237
Query: 451 TIKWSP--------TGPETSNPNMSLIFILK-------STLGQHKGP-IFALKWNKRGNY 494
+ +SP TGP ++ I+ ST + + P +L W+ G
Sbjct: 238 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 495 ILSAGVDKTTIIWDAASG 512
+ + D +W G
Sbjct: 298 LFAGYTDNLVRVWQVTIG 315
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 308 TSDGSLKSTLGQHKGPIFALKWNKR-GNYILSAGVDKTTIIW-----DAASGQCEQQFSF 361
T +L+ TL H G + + + + ILSA DKT I+W + G ++
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 362 HSAPALDVDWQSNTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLA 420
HS DV S+ FA S S D + + L + + F GHT +V ++ + +
Sbjct: 62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 421 SCSDDMTLKIWSLDKDNCVHDLQ--AHNKEIYTIKWSPTGPETSNPNM------SLIFI- 471
S S D T+K+W+ C + +Q +H++ + +++SP +SNP + L+ +
Sbjct: 122 SGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSP---NSSNPIIVSCGWDKLVKVW 177
Query: 472 ------LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQ 513
LK+ H G + + + G+ S G D ++WD G+
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
TL LWD+ G HT+ V SVAFS D + + SGS DK + +W+
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 181 TGGIFEVCWNSRGTPPNP-PESMEVDASIEIPQSKATKL----IGHESEVFICAWNPVKD 235
+ + C NP S D +++ KL IGH + +P
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 236 FLASGSGDSTARIWDMTD 253
ASG D A +WD+ +
Sbjct: 206 LCASGGKDGQAMLWDLNE 223
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 65/243 (26%)
Query: 121 TLPLWDVERGEC-----LNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +W + R E L H+ V V S DG+F SGS+D + +W TG
Sbjct: 39 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--- 95
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKD 235
+ + +GH +V A++
Sbjct: 96 -------------------------------------TTTRRFVGHTKDVLSVAFSSDNR 118
Query: 236 FLASGSGDSTARIWD---MTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNG 292
+ SGS D T ++W+ + T +D + V C+ N++
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV--SCV--------------RFSPNSSN 162
Query: 293 SFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 351
+ + +D ++W ++ LK+ H G + + + G+ S G D ++WD
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 352 SGQ 354
G+
Sbjct: 223 EGK 225
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ +W++ + HT + +V SPDG ASG D +W G+ +++ G
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 182 GGIFEVC------WNSRGTPPNPPESMEVDASIEIPQSK----ATKLIGHESEVFICAWN 231
I +C W T P+ + +++ I + + K +T + AW+
Sbjct: 234 DIINALCFSPNRYWLCAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 292
Query: 232 PVKDFLASGSGDSTARIWDMTDSTK 256
L +G D+ R+W +T T+
Sbjct: 293 ADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 45/195 (23%)
Query: 379 SCSTDQHIHVCKLHSDK-----PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D+ I + KL D+ P ++ GH++ V+ + G S S D TL++W L
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
H K++ ++ +S +
Sbjct: 93 TTGTTTRRFVGHTKDVLSVAFSSDNRQ--------------------------------- 119
Query: 494 YILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDVDWQSNTS---FASCSTDQHIHVC 548
I+S DKT +W+ G C+ Q HS V + N+S SC D+ + V
Sbjct: 120 -IVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Query: 549 KLHSDKPVKSFEGHT 563
L + K + GHT
Sbjct: 178 NLANCKLKTNHIGHT 192
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 320 HKGPIFALKWNKRGNYILSA------------GVDKTTIIWDAASG----QCEQQFSFHS 363
+K P+ L R NYI S G T IWD A+ + E S +
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 364 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
AL + S F SC +D +I V LH+ V+ F+GHT+ + I G L +
Sbjct: 144 CYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 424 DDMTLKIWSLDKDNCVHDLQAHN--KEIYTIKWSPTGP----ETSNPNMSLIFILKS--- 474
D T++ W L + LQ H+ +I+++ + PTG + N+ ++ + K
Sbjct: 203 LDNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259
Query: 475 TLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG 512
L H+ + +LK+ G + +S G D W G
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 479 HKGPIFALKWNKRGNYILSA------------GVDKTTIIWDAASG----QCEQQFSFHS 522
+K P+ L R NYI S G T IWD A+ + E S +
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 523 APALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTG 565
AL + S F SC +D +I V LH+ V+ F+GHT G
Sbjct: 144 CYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDG 185
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 92/264 (34%), Gaps = 63/264 (23%)
Query: 92 NRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVE--RGECLNTLTRHTEPVYSVAFS 149
NR N + S + P I GE TL +WD+ LT Y++A S
Sbjct: 95 NRDNYIRSCKLL-PDGCTLIVGGEAS---TLSIWDLAAPTPRIKAELTSSAPACYALAIS 150
Query: 150 PDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIE 209
PD K S D + +W LV ++G + + I+
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG--------------------HTDGASCID 190
Query: 210 IPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHC 269
I + TKL W +G D+T R WD+ ++ ++LQ +H
Sbjct: 191 I-SNDGTKL-----------W--------TGGLDNTVRSWDL-----REGRQLQ---QHD 222
Query: 270 ISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKW 329
+ + SL + G +LA G + + K L H+ + +LK+
Sbjct: 223 FT---------SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 330 NKRGNYILSAGVDKTTIIWDAASG 353
G + +S G D W G
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYG 297
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 111/269 (41%), Gaps = 58/269 (21%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGT 181
+ LWD+E G+ + ++ +++AFSPD ++LA+G+ V+I+ +G+ +S
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL--- 160
Query: 182 GGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGS 241
++RG + A++P +LASG+
Sbjct: 161 --------DTRG-----------------------------KFILSIAYSPDGKYLASGA 183
Query: 242 GDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYD 301
D I+D+ +T K L H + G +P + SL ++ + L T S D
Sbjct: 184 IDGIINIFDI--ATGK--------LLHTLE--GHAMP----IRSLTFSPDSQLLVTASDD 227
Query: 302 GYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 360
GY +I+ +L TL H + + + + +S+ DK+ +WD + C F
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 361 FHSAPALDVDWQSNTS-FASCSTDQHIHV 388
H V + N S S DQ IH+
Sbjct: 288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 122/304 (40%), Gaps = 30/304 (9%)
Query: 220 GHESEVFICAWNPVK----DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGT 275
H+ ++ AW K + + +GS D ++W D + +LQ L G
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLE------GH 79
Query: 276 EVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFA--LKWNKRG 333
++ V S+D ++ A+ S D + R+W + K GP+ A L ++
Sbjct: 80 QLG----VVSVDISHTLPIAASSSLDAHIRLWDLENG-KQIKSIDAGPVDAWTLAFSPDS 134
Query: 334 NYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLH 392
Y+ + I+ SG+ E L + + + + AS + D I++ +
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTI 452
+ K + + EGH + ++ + P LL + SDD +KI+ + N L H + +
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Query: 453 KWSPTGPETSNPNMSLIF--------ILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTT 504
+ P + + T H+ ++ +K+N G+ I+S G D+
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314
Query: 505 IIWD 508
I+D
Sbjct: 315 HIYD 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 133/328 (40%), Gaps = 60/328 (18%)
Query: 139 HTEPVYSVAFSPDGK----FLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
H + ++SVA+ + K + +GS D V +W R +L ++ W+ G
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWSLEG- 78
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
+ + VD S +P AS S D+ R+WD+
Sbjct: 79 --HQLGVVSVDISHTLP------------------------IAASSSLDAHIRLWDL--- 109
Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSL 313
++ K+++ I G D +L ++ + +LATG++ G I+ G
Sbjct: 110 --ENGKQIK-----SIDAGPV------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQS 373
+ +L I ++ ++ G Y+ S +D I+D A+G+ H+ P + +
Sbjct: 157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP 216
Query: 374 NTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
++ + S D +I + + + GH + V + + P S S D ++K+W
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPE 460
+ CVH H +++ +K++ G +
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 118 HRLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
H + ++ VE G+ +L + + S+A+SPDGK+LASG+ D ++I+ TG+L+H+
Sbjct: 142 HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 178 YKG 180
+G
Sbjct: 202 LEG 204
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 320 HKGPIFALKW--NKRGN--YILSAGVDKTTIIWDAASGQCEQQFSF--HSAPALDVDWQS 373
H I+++ W NK+ N +++ +D +W + + Q+S H + VD
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 374 NTSFA-SCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
A S S D HI + L + K +KS + + + + P LA+ + + I+
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 433 LDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIF--------ILKSTLGQHKGPIF 484
++ + L K I +I +SP G ++ + I L TL H PI
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 485 ALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW-QSNTSFAS 538
+L ++ +++A D I+D S H++ L+V + +T F S
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIW 167
WDV C++T H + V+ V ++ +G + S D+ +HI+
Sbjct: 275 WDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
T P + +G + LT+ LW+ E L T H V VAF+P D ASG D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
+WS GQ ++ T G E N P P + + AS ++ +S
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
L GH S V ++P + SGS D T +IW+ ST K K L + L CI+
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
T K+ + ++N + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
S D I V ++ + V FE H + + +I P + S SDD+T+K+W+ + + +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
+ H + + ++P P T S PN +L T GQ +G
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
+ + Y+++A D T IWD + C H SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSD-GSLKSTLGQ 319
E Q+ +R I T V + K + +W + GS D R++ + G
Sbjct: 43 ETQVEVR-SIQVTETPVRAGKFIARKNW------IIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDW--QSNTS 376
H I ++ + Y+LS D T +W+ + EQ F H + V + + ++
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSL 433
FAS D+ + V L P + G VN + + P + + SDD+T+KIW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGP 459
+CV L+ H + + PT P
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLP 241
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 294 FLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 350
++ +GS D ++W ++ +L+ T H+ + + +N + ++G +D+T +W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-- 168
Query: 351 ASGQCEQQFSFHSAPALDVDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 404
+ GQ F+ + V++ + S D I + + V + EGH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+ V+ + P ++ S S+D TLKIW+ L + + I PTG
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG-QLVHSY 178
+ +++ GE + H + + S+A P ++ SGS D V +W+ L ++
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPV 233
+G F +C P+ S +D ++++ T G E V + P+
Sbjct: 137 EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 234 KD--FLASGSGDSTARIWD 250
D ++ + S D T +IWD
Sbjct: 196 PDKPYMITASDDLTIKIWD 214
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
T P + +G + LT+ LW+ E L T H V VAF+P D ASG D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
+WS GQ ++ T G E N P P + + AS ++ +S
Sbjct: 166 KVWS--LGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
L GH S V ++P + SGS D T +IW+ ST K K L + L CI+
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
T K+ + ++N + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
S D I V ++ + V FE H + + +I P + S SDD+T+K+W+ + + +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
+ H + + ++P P T S PN +L T GQ +G
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
+ + Y+++A D T IWD + C H SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST-LGQ 319
E Q+ +R I T V + K + +W + GS D R++ + K
Sbjct: 43 ETQVEVR-SIQVTETPVRAGKFIARKNW------IIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDW--QSNTS 376
H I ++ + Y+LS D T +W+ + EQ F H + V + + ++
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSL 433
FAS D+ + V L P + G VN + + P + + SDD+T+KIW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGP 459
+CV L+ H + + PT P
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLP 241
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 294 FLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 350
++ +GS D ++W ++ +L+ T H+ + + +N + ++G +D+T +W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-- 168
Query: 351 ASGQCEQQFSFHSAPALDVDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 404
+ GQ F+ + V++ + S D I + + V + EGH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+ V+ + P ++ S S+D TLKIW+ L + + I PTG
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 18/196 (9%)
Query: 385 HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQA 444
+ + + V+S + V A K+ + + SDD +++++ + V D +A
Sbjct: 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 445 HNKEIYTIKWSPTGPETSNPNMSLI---------FILKSTLGQHKGPIFALKWNKRGNYI 495
H I +I PT P + + L + L+ T H+ + + +N +
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 496 LSAG-VDKTTIIWDAASGQCEQQFSFHSAPALDVDW------QSNTSFASCSTDQHIHVC 548
++G +D+T +W + GQ F+ + V++ + S D I +
Sbjct: 156 FASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 549 KLHSDKPVKSFEGHTT 564
+ V + EGH +
Sbjct: 214 DYQTKSCVATLEGHMS 229
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG-QLVHSYKG 180
+ +++ GE + H + + S+A P ++ SGS D V +W+ L +++G
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKD 235
F +C P+ S +D ++++ T G E V + P+ D
Sbjct: 139 HEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 236 --FLASGSGDSTARIWD 250
++ + S D T +IWD
Sbjct: 198 KPYMITASDDLTIKIWD 214
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
T P + +G + LT+ LW+ E L T H V VAF+P D ASG D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
+WS GQ ++ T G E N P P + + AS ++ +S
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
L GH S V ++P + SGS D T +IW+ ST K K L + L CI+
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
T K+ + ++N + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
S D I V ++ + V FE H + + +I P + S SDD+T+K+W+ + + +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
+ H + + ++P P T S PN +L T GQ +G
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
+ + Y+++A D T IWD + C H SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST-LGQ 319
E Q+ +R I T V + K + +W + GS D R++ + K
Sbjct: 43 ETQVEVR-SIQVTETPVRAGKFIARKNW------IIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDW--QSNTS 376
H I ++ + Y+LS D T +W+ + EQ F H + V + + ++
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSL 433
FAS D+ + V L P + G VN + + P + + SDD+T+KIW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGP 459
+CV L+ H + + PT P
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLP 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 294 FLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 350
++ +GS D ++W ++ +L+ T H+ + + +N + ++G +D+T +W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-- 168
Query: 351 ASGQCEQQFSFHSAPALDVDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 404
+ GQ F+ + V++ + S D I + + V + EGH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+ V+ + P ++ S S+D TLKIW+ L + + I PTG
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 28/237 (11%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG-QLVHSYKG 180
+ +++ GE + H + + S+A P ++ SGS D V +W+ L +++G
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKD 235
F +C P+ S +D ++++ T G E V + P+ D
Sbjct: 139 HEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 236 --FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
++ + S D T +IWD + C++ T +V+ ++
Sbjct: 198 KPYMITASDDLTIKIWDYQ-------------TKSCVA---TLEGHMSNVSFAVFHPTLP 241
Query: 294 FLATGSYDGYARIWTSDG-SLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTII 347
+ +GS DG +IW S ++ TL G + A R NYI S + T++
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 107 TGPAITNGEEVHRLTLPLWDVERGECL-NTLTRHTEPVYSVAFSP-DGKFLASGSFDKCV 164
T P + +G + LT+ LW+ E L T H V VAF+P D ASG D+ V
Sbjct: 108 TKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 165 HIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIP--------QSKAT 216
+WS GQ ++ T G E N P P + + AS ++ +S
Sbjct: 166 KVWSL--GQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 217 KLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRH--CISKGG 274
L GH S V ++P + SGS D T +IW+ ST K K L + L CI+
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN--SSTYKVEKTLNVGLERSWCIA--- 277
Query: 275 TEVPSNKDVTSLDWNNNGSFLATGS 299
T K+ + ++N + L+ G+
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGN 302
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 381 STDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVH 440
S D I V ++ + V FE H + + +I P + S SDD+T+K+W+ + + +
Sbjct: 74 SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 441 D-LQAHNKEIYTIKWSPTGPET-----------------SNPNMSLIFILKSTLGQHKGP 482
+ H + + ++P P T S PN +L T GQ +G
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------TTGQERGV 187
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFA 537
+ + Y+++A D T IWD + C H SN SFA
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---------MSNVSFA 234
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST-LGQ 319
E Q+ +R I T V + K + +W + GS D R++ + K
Sbjct: 43 ETQVEVR-SIQVTETPVRAGKFIARKNW------IIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 320 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSFHSAPALDVDW--QSNTS 376
H I ++ + Y+LS D T +W+ + EQ F H + V + + ++
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFE-GHTNEVNAIKWDP--QGLLLASCSDDMTLKIWSL 433
FAS D+ + V L P + G VN + + P + + SDD+T+KIW
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGP 459
+CV L+ H + + PT P
Sbjct: 216 QTKSCVATLEGHMSNVSFAVFHPTLP 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 294 FLATGSYDGYARIWT--SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG-VDKTTIIWDA 350
++ +GS D ++W ++ +L+ T H+ + + +N + ++G +D+T +W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW-- 168
Query: 351 ASGQCEQQFSFHSAPALDVDW------QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHT 404
+ GQ F+ + V++ + S D I + + V + EGH
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 405 NEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTG 458
+ V+ + P ++ S S+D TLKIW+ L + + I PTG
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 28/237 (11%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTG-QLVHSYKG 180
+ +++ GE + H + + S+A P ++ SGS D V +W+ L +++G
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKD 235
F +C P+ S +D ++++ T G E V + P+ D
Sbjct: 139 HEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 236 --FLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGS 293
++ + S D T +IWD + C++ T +V+ ++
Sbjct: 198 KPYMITASDDLTIKIWDYQ-------------TKSCVA---TLEGHMSNVSFAVFHPTLP 241
Query: 294 FLATGSYDGYARIWTSDG-SLKSTL--GQHKGPIFALKWNKRGNYILSAGVDKTTII 347
+ +GS DG +IW S ++ TL G + A R NYI S + T++
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
+FL +GS + R W++ DS + PK Q+ V + W+++GS
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------------HTGPVLDVCWSDDGSK 100
Query: 295 LATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNY--ILSAGVDKTTIIWDAAS 352
+ T S D A++W + + QH P+ + W K NY +++ DKT WD S
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 292 GSFLATGSYDGYARIWT---SDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIW 348
G+FL GS+ R W S ++ H GP+ + W+ G+ + +A DKT +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 349 DAASGQCEQQFSFHSAPALDVDW 371
D +S Q Q + H AP + W
Sbjct: 114 DLSSNQ-AIQIAQHDAPVKTIHW 135
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDW 530
H GP+ + W+ G+ + +A DKT +WD +S Q Q + H AP + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHW 135
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 146 VAFSPD---GKFLASGSFDKCVHIWSAR-TGQLVHSYKG--TGGIFEVCWNSRGTPPNPP 199
++FSP G FL +GS+ V W + +GQ + + TG + +VCW+ G+
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 200 ESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDF--LASGSGDSTARIWDMTDS 254
+ ++ ++A ++ H++ V W ++ + +GS D T + WD S
Sbjct: 105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 37/116 (31%)
Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
K+ + HT V + W G + + S D T K+W L + +
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----------------- 122
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNY--ILSAGVDKTTIIWDAAS 511
+ QH P+ + W K NY +++ DKT WD S
Sbjct: 123 ------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 286 LDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIF--ALKWNKRGNYILSAGVDK 343
LDW+N + Y +W +D S L + + ++KW+ G++ LS G+
Sbjct: 99 LDWSNLNVVAVALERNVY--VWNADSGSVSALAETDESTYVASVKWSHDGSF-LSVGLGN 155
Query: 344 TTI-IWDAASGQCEQQFSFHSAPALDVDWQSNT-SFASCSTDQHIHVCKLHSDKPVKSFE 401
+ I+D S + + H A + W + S S S H H ++ ++ + + +
Sbjct: 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI-ANHQIGTLQ 214
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSP 456
GH++EV + W GL LAS +D ++IW HN + + W P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 27/231 (11%)
Query: 212 QSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
Q+K + GH++ V +WN + L+SGS D+ + H I
Sbjct: 166 QTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVR------------IANHQI- 210
Query: 272 KGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSL-KSTLGQHKGPIFALKWN 330
GT + +V L W ++G LA+G D +IW + S+ K T H + A+ W
Sbjct: 211 --GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268
Query: 331 KRGNYILSAG---VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCS---TDQ 384
+ +L+ G +DK W+AA+G S + W ++ + D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDN 327
Query: 385 HIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
++ + S K + H V P G +L++ + D LK W +
Sbjct: 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSP-DGKFLASG--SFDKCVHIWSARTGQLVHSYKG 180
+WD T T H V +VA+ P LA+G + DK +H W+A TG V++
Sbjct: 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQ-------------SKATKLIGHESEVFI 227
+ + W+ P S E+ ++ P +K + H++ V
Sbjct: 303 GSQVTSLIWS--------PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354
Query: 228 CAWNPVKDFLASGSGDSTARIWDMTD 253
A +P L++ + D + W + D
Sbjct: 355 SALSPDGRILSTAASDENLKFWRVYD 380
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 124 LWDVERGECLNTLTRHTEPVY--SVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG- 180
+W+ + G ++ L E Y SV +S DG FL+ G + V I+ + + + G
Sbjct: 117 VWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH 175
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
+ + WN + I + L GH SEV AW LASG
Sbjct: 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235
Query: 241 SGDSTARIWDMTDSTKK 257
D+ +IWD S K
Sbjct: 236 GNDNVVQIWDARSSIPK 252
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 17/192 (8%)
Query: 369 VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE---VNAIKWDPQGLLLASCSDD 425
+DW SN + + + +++++V ++D S T+E V ++KW G L+ +
Sbjct: 99 LDW-SNLNVVAVALERNVYVW--NADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN 155
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWS----PTGPETSNPNMSLIFILKSTLGQ--- 478
+ I+ ++ + + H + + W+ +G + + + I +G
Sbjct: 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215
Query: 479 HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV---DWQSN-T 534
H + L W G + S G D IWDA S + + H+A V WQSN
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 535 SFASCSTDQHIH 546
+ + D+ IH
Sbjct: 276 ATGGGTMDKQIH 287
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 362 HSAPALDVDW--QSNTSFASCSTDQHIHV-------CKLHSDKPVKSFEGHTNEVNAIKW 412
H+AP LD+ W ++ AS S D + V L +PV + EGHT V + W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 413 DP--QGLLLASCSDDMTLKIWSLDKDNCVHDL--QAHNKEIYTIKWSPTG 458
P Q +LL++ D++ L +W + V L H IY++ WS G
Sbjct: 140 HPTAQNVLLSAGXDNVIL-VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 44/167 (26%)
Query: 394 DKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHD-------LQAH 445
DK V GHT V I W P ++AS S+D T+ +W + V L+ H
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 505
K + + W PT N +LSAG D +
Sbjct: 131 TKRVGIVAWHPTA---------------------------------QNVLLSAGXDNVIL 157
Query: 506 IWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCS-TDQHIHVCK 549
+WD +G H VDW + + S D+ + V +
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 220 GHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDP-KELQIVLRHCISKGGTEV 277
GH + V AW P D +ASGS D T +W++ D P +E I L +G T
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-----EGHT-- 131
Query: 278 PSNKDVTSLDWNNNG-SFLATGSYDGYARIW-TSDGSLKSTLGQ--HKGPIFALKWNKRG 333
K V + W+ + L + D +W G+ TLG H I+++ W++ G
Sbjct: 132 ---KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 334 NYILSAGVDKTTIIWDAASG 353
I ++ DK + + G
Sbjct: 189 ALICTSCRDKRVRVIEPRKG 208
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 50/190 (26%)
Query: 120 LTLPLWDVER-GECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHS 177
L LPL R + + + HT PV +A+ P + +ASGS D V +W G LV
Sbjct: 60 LVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP-VKDF 236
+ L GH V I AW+P ++
Sbjct: 120 LR---------------------------------EPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
L S D+ +WD+ + G +V + + S+DW+ +G+ +
Sbjct: 147 LLSAGXDNVILVWDVGTGA-------------AVLTLGPDVHPDT-IYSVDWSRDGALIC 192
Query: 297 TGSYDGYARI 306
T D R+
Sbjct: 193 TSCRDKRVRV 202
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 35/202 (17%)
Query: 227 ICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS 285
CA NP + SG + + + + D K + +V H V
Sbjct: 39 FCAVNPKFMALIXEASGGGAFLVLPLGKTGRVD-KNVPLVXGH-----------TAPVLD 86
Query: 286 LDWN-NNGSFLATGSYDGYARIW-TSDGSLKS-------TLGQHKGPIFALKWNKRG-NY 335
+ W +N + +A+GS D +W DG L TL H + + W+ N
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 336 ILSAGVDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
+LSAG D ++WD +G H VDW + + +C
Sbjct: 147 LLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----------ICTSCR 196
Query: 394 DKPVKSFEGHTNEVNAIKWDPQ 415
DK V+ E V A K P
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPH 218
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 124 LWDVERGECLNTL--TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV 175
+WDV G + TL H + +YSV +S DG + + DK V + R G +V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 45/261 (17%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
IW +G+ Q + HSA V W + S+D + V + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
+ H VN+ W P + + D +KIW + D + L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 443 QAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
+ H+ + + WSPT S +I+ K+ L + K P ++
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262
Query: 487 KWNKRGNYILSAGVDKTTIIW 507
W+ GN + +G D +W
Sbjct: 263 SWSLSGNVLALSGGDNKVTLW 283
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 44/230 (19%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSF 294
LA+ S D T +I+++ T K L G E P V +DW + G+
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGP----VWRVDWAHPKFGTI 71
Query: 295 LATGSYDGYARIWTSDGSLKSTL---GQHKGPIFALKW--NKRGNYILSAGVD-KTTIIW 348
LA+ SYDG IW + S + H + +++W ++ G +L A D K +++
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131
Query: 349 DAASGQCEQQF---------SFHSAPA-LDVDWQSNTS-----FASCSTDQHIHVCKLHS 393
+G S APA ++ D + N + F + D + + K +S
Sbjct: 132 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191
Query: 394 DKPV----KSFEGHTNEVNAIKWDPQGLL---LASCSDDMTLKIWSLDKD 436
D + EGH++ V + W P LL LAS S D T IW+ D +
Sbjct: 192 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 54/266 (20%)
Query: 121 TLPLWDVERGE---CLNTLTRHTEPVYSV--AFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +++VE GE ++TLT H PV+ V A G LAS S+D V IW G+
Sbjct: 34 TIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW- 91
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS-------IEIPQSKATKLI---GHESEV 225
S + NS P+ + + AS +E ++ T I H V
Sbjct: 92 -SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 150
Query: 226 FICAWNPV--------------KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
+W P + F+ +G D+ +IW K + Q +
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIW-------KYNSDAQTYVLESTL 202
Query: 272 KGGTEVPSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSDGSL----KSTLGQHKGP- 323
+G ++ V + W+ S+LA+ S D IWT D K+ L + K P
Sbjct: 203 EGHSDW-----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 257
Query: 324 -IFALKWNKRGNYILSAGVDKTTIIW 348
++ W+ GN + +G D +W
Sbjct: 258 VLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 36/122 (29%)
Query: 413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL 472
D G LA+CS D T+KI+ ++ + H L
Sbjct: 20 DYYGKRLATCSSDKTIKIFEVEG-------ETHK-------------------------L 47
Query: 473 KSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDV 528
TL H+GP++ + W K G + S D +IW +G+ Q + HSA V
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107
Query: 529 DW 530
W
Sbjct: 108 QW 109
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 362 HSAPALDVDW--QSNTSFASCSTDQHIHV-------CKLHSDKPVKSFEGHTNEVNAIKW 412
H+AP LD+ W ++ AS S D + V L +PV + EGHT V + W
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 413 DP--QGLLLASCSDDMTLKIWSLDKDNCVHDL--QAHNKEIYTIKWSPTG 458
P Q +LL++ D++ L +W + V L H IY++ WS G
Sbjct: 140 HPTAQNVLLSAGCDNVIL-VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 44/165 (26%)
Query: 394 DKPVKSFEGHTNEVNAIKWDPQG-LLLASCSDDMTLKIWSLDKDNCVHDL-------QAH 445
DK V GHT V I W P ++AS S+D T+ +W + V L + H
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 446 NKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTI 505
K + + W PT N +LSAG D +
Sbjct: 131 TKRVGIVAWHPTA---------------------------------QNVLLSAGCDNVIL 157
Query: 506 IWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCST-DQHIHV 547
+WD +G H VDW + + S D+ + V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 218 LIGHESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDP-KELQIVLRHCISKGGT 275
+ GH + V AW P D +ASGS D T +W++ D P +E I L +G T
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-----EGHT 131
Query: 276 EVPSNKDVTSLDWNNNG-SFLATGSYDGYARIW-TSDGSLKSTLGQ--HKGPIFALKWNK 331
K V + W+ + L + D +W G+ TLG H I+++ W++
Sbjct: 132 -----KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 332 RGNYILSAGVDKTTIIWDAASG 353
G I ++ DK + + G
Sbjct: 187 DGALICTSCRDKRVRVIEPRKG 208
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 50/190 (26%)
Query: 120 LTLPLWDVER-GECLNTLTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHS 177
L LPL R + + + HT PV +A+ P + +ASGS D V +W G LV
Sbjct: 60 LVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP 119
Query: 178 YKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNP-VKDF 236
+ L GH V I AW+P ++
Sbjct: 120 LR---------------------------------EPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
L S D+ +WD+ + G +V + + S+DW+ +G+ +
Sbjct: 147 LLSAGCDNVILVWDVGTGAA-------------VLTLGPDVHPDT-IYSVDWSRDGALIC 192
Query: 297 TGSYDGYARI 306
T D R+
Sbjct: 193 TSCRDKRVRV 202
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 35/202 (17%)
Query: 227 ICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTS 285
CA NP + SG + + + + D K + +V H V
Sbjct: 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-KNVPLVCGH-----------TAPVLD 86
Query: 286 LDW-NNNGSFLATGSYDGYARIW-TSDGSLK-------STLGQHKGPIFALKWNKRG-NY 335
+ W +N + +A+GS D +W DG L TL H + + W+ N
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 336 ILSAGVDKTTIIWDAASGQCEQQFS--FHSAPALDVDWQSNTSFASCSTDQHIHVCKLHS 393
+LSAG D ++WD +G H VDW + + +C
Sbjct: 147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----------ICTSCR 196
Query: 394 DKPVKSFEGHTNEVNAIKWDPQ 415
DK V+ E V A K P
Sbjct: 197 DKRVRVIEPRKGTVVAEKDRPH 218
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 124 LWDVERGECLNTL--TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLV 175
+WDV G + TL H + +YSV +S DG + + DK V + R G +V
Sbjct: 158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
IW +G+ Q + HSA V W + S+D + V + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
+ H VN+ W P + + D +KIW + D + L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
+ H+ + + WSPT S +I+ K+ L + K P ++
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
W+ GN + LS G +K T+ + G+ E H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 97/230 (42%), Gaps = 44/230 (19%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSF 294
LA+ S D T +I+++ T K L G E P V +DW + G+
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGP----VWRVDWAHPKFGTI 69
Query: 295 LATGSYDGYARIWTSDGSLKSTL---GQHKGPIFALKW--NKRGNYILSAGVD-KTTIIW 348
LA+ SYDG IW + S + H + +++W ++ G +L A D K +++
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 349 DAASGQCEQQF---------SFHSAPA-LDVDWQSNTS-----FASCSTDQHIHVCKLHS 393
+G S APA ++ D + N + F + D + + K +S
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 394 DKPV----KSFEGHTNEVNAIKWDPQGLL---LASCSDDMTLKIWSLDKD 436
D + EGH++ V + W P LL LAS S D T IW+ D +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 121 TLPLWDVERGE---CLNTLTRHTEPVYSV--AFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +++VE GE ++TLT H PV+ V A G LAS S+D V IW G+
Sbjct: 32 TIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW- 89
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS-------IEIPQSKATKLI---GHESEV 225
S + NS P+ + + AS +E ++ T I H V
Sbjct: 90 -SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148
Query: 226 FICAWNPV--------------KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
+W P + F+ +G D+ +IW K + Q +
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIW-------KYNSDAQTYVLESTL 200
Query: 272 KGGTEVPSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSDGSL----KSTLGQHKGP- 323
+G ++ V + W+ S+LA+ S D IWT D K+ L + K P
Sbjct: 201 EGHSDW-----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 324 -IFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 362
++ W+ GN + LS G +K T+ + G+ E H
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 36/122 (29%)
Query: 413 DPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFIL 472
D G LA+CS D T+KI+ ++ + H L
Sbjct: 18 DYYGKRLATCSSDKTIKIFEVEG-------ETHK-------------------------L 45
Query: 473 KSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALDV 528
TL H+GP++ + W K G + S D +IW +G+ Q + HSA V
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 529 DW 530
W
Sbjct: 106 QW 107
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 104/276 (37%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G +AT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
IW +G+ Q + HSA V W + S+D + V + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
+ H VN+ W P + + D +KIW + D + L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPT------GPETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
+ H+ + + WSPT S +I+ K+ L + K P ++
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
W+ GN + LS G +K T+ + G+ E H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 44/230 (19%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSF 294
+A+ S D T +I+++ T K L G E P V +DW + G+
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGP----VWRVDWAHPKFGTI 69
Query: 295 LATGSYDGYARIWTSDGSLKSTL---GQHKGPIFALKW--NKRGNYILSAGVD-KTTIIW 348
LA+ SYDG IW + S + H + +++W ++ G +L A D K +++
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 349 DAASGQCEQQF---------SFHSAPA-LDVDWQSNTS-----FASCSTDQHIHVCKLHS 393
+G S APA ++ D + N + F + D + + K +S
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 394 DKPV----KSFEGHTNEVNAIKWDPQGLL---LASCSDDMTLKIWSLDKD 436
D + EGH++ V + W P LL +AS S D T IW+ D +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 121 TLPLWDVERGE---CLNTLTRHTEPVYSV--AFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +++VE GE ++TLT H PV+ V A G LAS S+D V IW G+
Sbjct: 32 TIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW- 89
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS-------IEIPQSKATKLI---GHESEV 225
S + NS P+ M + AS +E ++ T I H V
Sbjct: 90 -SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148
Query: 226 FICAWNPV--------------KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
+W P + F+ +G D+ +IW K + Q +
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIW-------KYNSDAQTYVLESTL 200
Query: 272 KGGTEVPSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSDGSL----KSTLGQHKGP- 323
+G ++ V + W+ S++A+ S D IWT D K+ L + K P
Sbjct: 201 EGHSDW-----VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 324 -IFALKWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 362
++ W+ GN + LS G +K T+ + G+ E H
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 472 LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALD 527
L TL H+GP++ + W K G + S D +IW +G+ Q + HSA
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNS 104
Query: 528 VDW 530
V W
Sbjct: 105 VQW 107
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 388
+ K G+++ A +D +++ + A+D F +T+ I V
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 120
Query: 389 CKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
+ + + + H +E+ +K+ P G L S S DM LKIWS+
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--------------- 165
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
+ SNP TL H+ + + RG +LSA +D T +W+
Sbjct: 166 ----------KDGSNP---------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Query: 509 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 546
+G F+ P V N+ TD+ +H
Sbjct: 207 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 282 DVTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
++T L + +G L + S D +IW+ DGS TL H+ + + RG +LSA
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 387
+D T +W+ +G F+ P V N+ TD+ +H
Sbjct: 198 LDGTIRLWECGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 240
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
+ L +W V+ G TL H V +A G+ + S S D + +W TG +H++
Sbjct: 158 MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 266 LRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGP 323
L + I + G+++ D T++D G+ +G ++ S+ +L+ + Q H
Sbjct: 79 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 138
Query: 324 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
I LK+ G ++S+ D IW G + H A D+
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 184
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 99/262 (37%), Gaps = 47/262 (17%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G LAT S D +I+ +G L TL H+GP++ + W K G + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSD---KPVK 398
IW +G+ Q + HSA V W + S+D + V + + P+
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI- 139
Query: 399 SFEGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----D 441
+ H VN+ W P + + D +KIW + D +
Sbjct: 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199
Query: 442 LQAHNKEIYTIKWSPTG------PETSNPNMSLIFIL--------KSTLGQHKGP--IFA 485
L+ H+ + + WSPT S +I+ K+ L + K P ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 486 LKWNKRGNYILSAGVDKTTIIW 507
W+ GN + +G D +W
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW 281
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 237 LASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSF 294
LA+ S D T +I+++ T K L G E P V +DW + G+
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGP----VWRVDWAHPKFGTI 69
Query: 295 LATGSYDGYARIWTSDGSLKSTL---GQHKGPIFALKW--NKRGNYILSAGVD-KTTIIW 348
LA+ SYDG IW + S + H + +++W ++ G +L A D K +++
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 349 DAASGQCEQQF---------SFHSAPA-LDVDWQSN-----TSFASCSTDQHIHVCKLHS 393
+G S APA ++ D + N F + D + + K +S
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 394 DKPV----KSFEGHTNEVNAIKWDPQGLL---LASCSDDMTLKIWSLDKD 436
D + EGH++ V + W P LL LAS S D T IW+ D +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 54/266 (20%)
Query: 121 TLPLWDVERGE---CLNTLTRHTEPVYSV--AFSPDGKFLASGSFDKCVHIWSARTGQLV 175
T+ +++VE GE ++TLT H PV+ V A G LAS S+D V IW G+
Sbjct: 32 TIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW- 89
Query: 176 HSYKGTGGIFEVCWNSRGTPPNPPESMEVDAS-------IEIPQSKATKLI---GHESEV 225
S + NS P+ + + AS +E ++ T I H V
Sbjct: 90 -SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148
Query: 226 FICAWNPV--------------KDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCIS 271
+W P + F+ +G D+ +IW K + Q +
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIW-------KYNSDAQTYVLESTL 200
Query: 272 KGGTEVPSNKDVTSLDWNNN---GSFLATGSYDGYARIWTSDGSL----KSTLGQHKGP- 323
+G ++ V + W+ S+LA+ S D IWT D K+ L + K P
Sbjct: 201 EGHSDW-----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 324 -IFALKWNKRGNYILSAGVDKTTIIW 348
++ W+ GN + +G D +W
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 36/133 (27%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET 461
H ++ D G LA+CS D T+KI+ ++ + H
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------ETHK--------------- 44
Query: 462 SNPNMSLIFILKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQCEQ--Q 517
L TL H+GP++ + W K G + S D +IW +G+ Q
Sbjct: 45 ----------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94
Query: 518 FSFHSAPALDVDW 530
+ HSA V W
Sbjct: 95 HAVHSASVNSVQW 107
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 329 WNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 388
+ K G+++ A +D +++ + A+D F +T+ I V
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 123
Query: 389 CKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
+ + + + H +E+ +K+ P G L S S DM LKIWS+
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--------------- 168
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
+ SNP TL H+ + + RG +LSA +D T +W+
Sbjct: 169 ----------KDGSNP---------RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Query: 509 AASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 546
+G F+ P V N+ TD+ +H
Sbjct: 210 CGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 282 DVTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
++T L + +G L + S D +IW+ DGS TL H+ + + RG +LSA
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 341 VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIH 387
+D T +W+ +G F+ P V N+ TD+ +H
Sbjct: 201 LDGTIRLWECGTGTTIHTFNRKENPHDGV----NSIALFVGTDRQLH 243
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 120 LTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
+ L +W V+ G TL H V +A G+ + S S D + +W TG +H++
Sbjct: 161 MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 266 LRHCISKGGTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQ-HKGP 323
L + I + G+++ D T++D G+ +G ++ S+ +L+ + Q H
Sbjct: 82 LFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE 141
Query: 324 IFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDV 369
I LK+ G ++S+ D IW G + H A D+
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 46/276 (16%)
Query: 292 GSFLATGSYDGYARIWTSDGS---LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G AT S D +I+ +G L TL H+GP++ + W K G + S D
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 347 IWDAASGQCEQ--QFSFHSAPALDVDW---QSNTSFASCSTDQHIHVCKLHSDKPVKSF- 400
IW +G+ Q + HSA V W + S+D + V + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 401 -EGHTNEVNAIKWDP-------------QGLLLASCSDDMTLKIWSLDKDNCVH----DL 442
+ H VN+ W P + + D +KIW + D + L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 443 QAHNKEIYTIKWSPT------GPETSNPNMSLIFIL--------KSTLGQHKGP--IFAL 486
+ H+ + + WSPT S +I+ K+ L + K P ++
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Query: 487 KWNKRGNYI-LSAGVDKTTIIWDAASGQCEQQFSFH 521
W+ GN + LS G +K T+ + G+ E H
Sbjct: 261 SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 44/229 (19%)
Query: 238 ASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNN--GSFL 295
A+ S D T +I+++ T K L G E P V +DW + G+ L
Sbjct: 25 ATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGP----VWRVDWAHPKFGTIL 70
Query: 296 ATGSYDGYARIWTSDGSLKSTL---GQHKGPIFALKW--NKRGNYILSAGVD-KTTIIWD 349
A+ SYDG IW + S + H + +++W ++ G +L A D K +++
Sbjct: 71 ASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEF 130
Query: 350 AASGQCEQQF---------SFHSAPA-LDVDWQSNTS-----FASCSTDQHIHVCKLHSD 394
+G S APA ++ D + N + F + D + + K +SD
Sbjct: 131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190
Query: 395 KPV----KSFEGHTNEVNAIKWDPQGLL---LASCSDDMTLKIWSLDKD 436
+ EGH++ V + W P LL AS S D T IW+ D +
Sbjct: 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNE 239
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 121 TLPLWDVERGE---CLNTLTRHTEPVYSV--AFSPDGKFLASGSFDKCVHIWSARTGQ 173
T+ +++VE GE ++TLT H PV+ V A G LAS S+D V IW G+
Sbjct: 32 TIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGR 88
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 472 LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTIIWDAASGQCEQ--QFSFHSAPALD 527
L TL H+GP++ + W K G + S D IW +G+ Q + HSA
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNS 104
Query: 528 VDW 530
V W
Sbjct: 105 VQW 107
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 69/187 (36%), Gaps = 26/187 (13%)
Query: 139 HTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPN 197
H V +V + P D S SFDK + +W T Q + FE S P
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----FEETVYSHHMSPV 152
Query: 198 PPESMEVDASIEIPQSKATKLI---------GHESEVFICAWNPVKDF-LASGSGDSTAR 247
+ V P+ + L GH E+ +W+P D+ LA+ S DS +
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 248 IWDMTDSTKKDPKELQIVLRHCISKGGTEVPS-----NKDVTSLDWNNNGSFLATGSYDG 302
+WD+ + I L K V S N V L + ++G L T D
Sbjct: 213 LWDV-----RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 303 YARIWTS 309
R+W S
Sbjct: 268 RMRLWNS 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 84/251 (33%), Gaps = 98/251 (39%)
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLH 392
G Y+LS G D +++D ++ S S+ +C VC +
Sbjct: 56 GRYMLSGGSDGVIVLYD-------------------LENSSRQSYYTCKA-----VCSIG 91
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGL-LLASCSDDMTLKIWS------------------- 432
D P + H V ++W P + S S D TLK+W
Sbjct: 92 RDHP----DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH 147
Query: 433 -------------------------LDKDNCVHDLQAHNKEIYTIKWSPT-----GPETS 462
L +C H LQ H +EI + WSP ++
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 463 NPNMSLIFILKS-----TLGQ---------------HKGPIFALKWNKRGNYILSAGVDK 502
+ + L + ++ TL Q H G + L + G ++L+ G D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 503 TTIIWDAASGQ 513
+W++++G+
Sbjct: 268 RMRLWNSSNGE 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 122 LPLWDVERGECLNTLTRHTEPVYSVAFSPDGKF-LASGSFDKCVHIWSAR 170
+ L D++ G C + L H + + +V++SP + LA+ S D V +W R
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 122 LPLWDVERGE-CLNTL---------------TRHTEPVYSVAFSPDGKFLASGSFDKCVH 165
+ LWDV R CL TL T H V + F+ DG L + D +
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 166 IWSARTGQ--LVHSYK-----GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKL 218
+W++ G+ LV+ K G F V P + + T L
Sbjct: 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML 330
Query: 219 IGHESEVFICAWNPVKDFLASGSGDSTARIW 249
GH V C + L SGS D W
Sbjct: 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
A+CS+DQHI V KL D + S+ H + + AI W P+ G ++AS S D T+K+W
Sbjct: 25 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 84
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
D D N + L +Y++K++P
Sbjct: 85 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 119
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL----QAHNKEIYTIKWS 455
GH + V+ + +D G +A+CS D +K++ LDKD +L +AH+ I I W+
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 64
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 48/266 (18%)
Query: 121 TLPLW--DVERGEC-------LNTLTRHTEPVYSVAFSPD--GKFLASGSFDKCVHIWSA 169
T+ LW D ++ EC L TL +YSV F+P G LA D + ++ A
Sbjct: 80 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
Query: 170 RTGQLVHSYKGTGGI--------------FEVCWNSRGTPPNPPESMEVDASIEIPQSK- 214
+ S+ T + F + W P ++ +I + K
Sbjct: 140 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 199
Query: 215 -----ATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKDPKELQIV 265
A KL GH+S + +W P +A+G D RI+ +T+ K P
Sbjct: 200 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE--KLSP------ 251
Query: 266 LRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPI 324
++ + SN S D + + + + + A + ++ L S H G +
Sbjct: 252 ----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 307
Query: 325 FALKWNKRGNYILSAGVDKTTIIWDA 350
+++ WN G + SAG D +W A
Sbjct: 308 WSVSWNLTGTILSSAGDDGKVRLWKA 333
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 292 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKWN--KRGNYILSAGVDKT 344
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 345 TIIWDAASGQCE 356
+W+ Q E
Sbjct: 81 VKLWEEDPDQEE 92
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
A+CS+DQHI V KL D + S+ H + + AI W P+ G ++AS S D T+K+W
Sbjct: 27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
D D N + L +Y++K++P
Sbjct: 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL----QAHNKEIYTIKWS 455
GH + V+ + +D G +A+CS D +K++ LDKD +L +AH+ I I W+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 97/266 (36%), Gaps = 48/266 (18%)
Query: 121 TLPLW--DVERGEC-------LNTLTRHTEPVYSVAFSPD--GKFLASGSFDKCVHIWSA 169
T+ LW D ++ EC L TL +YSV F+P G LA D + ++ A
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 170 RTGQLVHSYKGTGGI--------------FEVCWNSRGTPPNPPESMEVDASIEIPQSK- 214
+ S+ T F + W P ++ +I + K
Sbjct: 142 LEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201
Query: 215 -----ATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKDPKELQIV 265
A KL GH+S + +W P +A+G D RI+ +T+ E +
Sbjct: 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT 261
Query: 266 LRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPI 324
SN S D + + + + + A + ++ L S H G +
Sbjct: 262 ------------NSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309
Query: 325 FALKWNKRGNYILSAGVDKTTIIWDA 350
+++ WN G + SAG D +W A
Sbjct: 310 WSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 292 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKWN--KRGNYILSAGVDKT 344
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 345 TIIWDAASGQCE 356
+W+ Q E
Sbjct: 83 VKLWEEDPDQEE 94
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 378 ASCSTDQHIHVCKLHSD----KPVKSFEGHTNEVNAIKW-DPQ-GLLLASCSDDMTLKIW 431
A+CS+DQHI V KL D + S+ H + + AI W P+ G ++AS S D T+K+W
Sbjct: 27 ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Query: 432 SLDKD---------NCVHDLQAHNKEIYTIKWSPT 457
D D N + L +Y++K++P
Sbjct: 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDL----QAHNKEIYTIKWS 455
GH + V+ + +D G +A+CS D +K++ LDKD +L +AH+ I I W+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA 66
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 101/266 (37%), Gaps = 48/266 (18%)
Query: 121 TLPLW--DVERGEC-------LNTLTRHTEPVYSVAFSPD--GKFLASGSFDKCVHIWSA 169
T+ LW D ++ EC L TL +YSV F+P G LA D + ++ A
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 170 RTGQLVHSYKGTGGI--------------FEVCWNSRGTPPNPPESMEVDASIEIPQSK- 214
+ S+ T + F + W P ++ +I + K
Sbjct: 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201
Query: 215 -----ATKLIGHESEVFICAWNPV----KDFLASGSGDSTARIWDMTDSTKKDPKELQIV 265
A KL GH+S + +W P +A+G D RI+ +T+ K P
Sbjct: 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE--KLSP------ 253
Query: 266 LRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPI 324
++ + SN S D + + + + + A + ++ L S H G +
Sbjct: 254 ----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV 309
Query: 325 FALKWNKRGNYILSAGVDKTTIIWDA 350
+++ WN G + SAG D +W A
Sbjct: 310 WSVSWNLTGTILSSAGDDGKVRLWKA 335
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 292 GSFLATGSYDGYARIW-----TSDGSLKSTLGQHKGPIFALKWN--KRGNYILSAGVDKT 344
G +AT S D + +++ TS+ L + H I A+ W + G I SA DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 345 TIIWDAASGQCE 356
+W+ Q E
Sbjct: 83 VKLWEEDPDQEE 94
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 35/239 (14%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSN 374
L +H G + + W N I++ G D+ +W + + A V W N
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 375 -TSFASCSTDQHIHVCKL----------HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
FA S + I +C H KP++S V ++ W P +LLA+ S
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAAGS 161
Query: 424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI 483
D +I+S A+ KE+ + +PT + P L+F S+ G G
Sbjct: 162 CDFKCRIFS-----------AYIKEVEE-RPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD 542
F+ G+ + D T + DA + + P L V + + +S + D
Sbjct: 210 FS----ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 264
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLK 429
+ T A C + +H+ + +K V+ E H +V I W P + +C D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAY 77
Query: 430 IWSLDKDNCVHDLQAH--NKEIYTIKWSP 456
+W+L L N+ ++W+P
Sbjct: 78 VWTLKGRTWKPTLVILRINRAARCVRWAP 106
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 35/239 (14%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH--SAPALDVDWQSN 374
L +H G + + W N I++ G D+ +W + + A V W N
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 375 -TSFASCSTDQHIHVCKL----------HSDKPVKSFEGHTNEVNAIKWDPQGLLLASCS 423
FA S + I +C H KP++S V ++ W P +LLA+ S
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAAGS 161
Query: 424 DDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPI 483
D +I+S A+ KE+ + +PT + P L+F S+ G G
Sbjct: 162 CDFKCRIFS-----------AYIKEVEE-RPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209
Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTD 542
F+ G+ + D T + DA + + P L V + + +S + D
Sbjct: 210 FS----ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 264
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 372 QSNTSFASCSTDQHIHVCKLHSDKPVKSFE--GHTNEVNAIKWDPQGLLLASCSDDMTLK 429
+ T A C + +H+ + +K V+ E H +V + W P + +C D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 77
Query: 430 IWSLDKDNCVHDLQAH--NKEIYTIKWSP 456
+W+L L N+ ++W+P
Sbjct: 78 VWTLKGRTWKPTLVILRINRAARCVRWAP 106
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 376
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS---- 432
S S D ++ +L D+ +K+ GH + A+ +P L S S D + WS
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM 367
Query: 433 -LDKDNCVHDL-QAHNKEIYTIKWSPT 457
D N + L + +E +I W T
Sbjct: 368 HQDHSNLIVSLDNSKAQEYSSISWDDT 394
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 535
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTG 565
S S D ++ +L D+ +K+ GH G
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKG 341
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 145/370 (39%), Gaps = 51/370 (13%)
Query: 125 WDVERGECLNTLTRHTEPVYSVAFSP---DGKFLASGSFDKCVHIWSARTGQLVHSY--- 178
+D + GE L + EPV F+ D + A+ D + +W T + V +
Sbjct: 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293
Query: 179 KGTGGIFEVCWNSRGTPPNPPESMEVDASI---EIPQSKATKLI-GHESEVFICAWNPVK 234
K G +V + G S+ +D ++ E+ + K I GH + NP
Sbjct: 294 KQQLGNQQVGVVATGN--GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-- 349
Query: 235 DFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF 294
L SGS D W + S +D L + L + ++ + + S D ++ F
Sbjct: 350 --LISGSYDGRIMEWS-SSSMHQDHSNLIVSLDNSKAQEYSSI-SWDDTLKVNGITKHEF 405
Query: 295 -----LATGSYDGYARIWTSDGSLKSTLGQHKGPIF-ALKWNKRG-------NYILSAGV 341
+A+ + DG+ + T+D L L G I +++ N G NY+ + G+
Sbjct: 406 GSQPKVASANNDGFTAVLTNDDDLL-ILQSFTGDIIKSVRLNSPGSAVSLSQNYV-AVGL 463
Query: 342 DKTTIIWDAASGQCEQQFSF----HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPV 397
++ I E F + P+ S T A+ I + L S + V
Sbjct: 464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REV 522
Query: 398 KS--FEGHTNEVNAIKWDP----------QGLLLASCSDDMTLKIWSLDKD-NCVHDLQA 444
K+ + T+++NAI W P + L+A+ S D + I+S+ + + L A
Sbjct: 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582
Query: 445 HNKEIYTIKW 454
H + + W
Sbjct: 583 HKDGVNNLLW 592
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 140/375 (37%), Gaps = 82/375 (21%)
Query: 193 GTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMT 252
G+P P S + I + A K H++++F + + F S SGD ++WD
Sbjct: 4 GSPEFPGMS-----KVFIATANAGK--AHDADIF--SVSACNSFTVSCSGDGYLKVWDNK 54
Query: 253 DSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF----LATGSYDG---YAR 305
++PK+ H + K G V L +F +AT S+ G + R
Sbjct: 55 LLDNENPKDKS--YSHFVHKSGLH-----HVDVLQAIERDAFELCLVATTSFSGDLLFYR 107
Query: 306 IWTSDGSLKSTLGQ--------HKGPIFALKWNKRGNYILS-----AGVDKTTIIWDAAS 352
I D + K + K +ALKW + +LS V TT IW
Sbjct: 108 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 167
Query: 353 GQCEQQ-FSFHSAPALD-----------------VDWQSNTSFASCSTDQHIHVCKLHSD 394
E + + +P L+ VD A+ + + + +L +
Sbjct: 168 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL 227
Query: 395 KPVKSFE------GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKE 448
+P+ +FE ++N + ++K+ PQG LLA D + C+
Sbjct: 228 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF--------GCI--------T 271
Query: 449 IYTIKWSPTGPETSNPNMSLIFILKSTLGQ--HKGPIFALKWNKRGNYILSAGVDKTTII 506
+Y ++ S P S +++LG+ H + +L +N G + SAG D
Sbjct: 272 LYETEFGERIGSLSVPTHS----SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 327
Query: 507 WDAASGQCEQQFSFH 521
WD + + + H
Sbjct: 328 WDVKTKERITTLNMH 342
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 281 KDVTSLDWNNNGSFLATGSYDGYARIWTS-DGSLKSTLGQHKGPIFALKWNKRGNYILSA 339
+ +T + +N G L + S D A +W S +G TL H G I+++ + Y ++
Sbjct: 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 340 GVDKTTIIWDAASGQC 355
D + +WD ++GQC
Sbjct: 93 SADYSIKLWDVSNGQC 108
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 317 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS 376
L H+ P+ +K+NK G+ + S D + +W + +G+ H+ +D T
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 377 F-ASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDM-----TLKI 430
+ + S D I + + + + V +++ V +++ P G + D++ ++ I
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 431 WSLDKDNCVHDLQAHNKE 448
+ +++D+ H+L ++E
Sbjct: 147 YEIERDSATHELTKVSEE 164
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 34/113 (30%)
Query: 402 GHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPET 461
GH + +K++ +G LL SCS D + +W Y++ G
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVW------------------YSLNGERLG--- 68
Query: 462 SNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQC 514
TL H G I+++ + Y ++ D + +WD ++GQC
Sbjct: 69 -------------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 19/150 (12%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG--- 180
+W GE L TL HT ++S+ K+ +GS D + +W GQ V ++K
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP 117
Query: 181 --------TGGIFEVCWNSRGTPPNPPESMEVDAS------IEIPQSKATKLIGHES--E 224
G F ++ P E++ ++ + K+I HE
Sbjct: 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177
Query: 225 VFICAWNPVKDFLASGSGDSTARIWDMTDS 254
+ W+ ++ +G D +D++++
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 214 KATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKG 273
KA KL GHE + +N D L S S DS+A +W + +
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL---------------- 67
Query: 274 GTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKR 332
GT + S+D + + TGS D ++W S+G +T + P+ ++++
Sbjct: 68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVKRVEFSPC 126
Query: 333 GNYILS 338
GNY L+
Sbjct: 127 GNYFLA 132
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 63/337 (18%), Positives = 131/337 (38%), Gaps = 55/337 (16%)
Query: 136 LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG-TGGIFEV---CWNS 191
LT H P+ V ++ +G L S S D +W + G+ + + G TG I+ + C+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWN---PVKDFLASGSGDSTARI 248
+ S+ KL + + W PVK S G+ I
Sbjct: 88 YCVTGSADYSI--------------KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133
Query: 249 WDMTDSTKKDPKELQIV------LRHCISKGGTEVPSNKDVT--SLD------WNNNGSF 294
D+ K+P + I H ++K +E P +K +T LD W+ G +
Sbjct: 134 L---DNVMKNPGSINIYEIERDSATHELTK-VSEEPIHKIITHEGLDAATVAGWSTKGKY 189
Query: 295 LATGSYDGYARIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAAS 352
+ G DG + +++ ++ H+ I ++++ Y +++ D + + D ++
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249
Query: 353 GQCEQQFS----FHSAPALDVD-------WQSNTSFASCSTDQHIHVCKLHS---DKPVK 398
Q +++ ++A + Q + S ++ + + ++ +
Sbjct: 250 LQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309
Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK 435
+GH +N + PQG AS +D +++ +K
Sbjct: 310 RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFL 155
++ LWDV G+C+ T + PV V FSP G +
Sbjct: 97 SIKLWDVSNGQCVATW-KSPVPVKRVEFSPCGNYF 130
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 476 LGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAP--ALDVD 529
L H+ P+ +K+NK G+ + S D + +W + +G+ H+ ++DVD
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 102/282 (36%), Gaps = 90/282 (31%)
Query: 292 GSFLATGSYDGYARIW-TSDGS--LKSTLGQHKGPIFALKWN--KRGNYILSAGVDKTTI 346
G+ LAT S D +I+ +G L + L H+GP++ + W GN + S D+ I
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 347 IWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNE 406
IW +G E+ H H GH +
Sbjct: 85 IWREENGTWEK--------------------------SHEHA-------------GHDSS 105
Query: 407 VNAIKWDPQ--GLLLASCSDDMTLKI--------WSLDKDNCVHDLQAHNKEIYTIKWSP 456
VN++ W P GL+LA S D + + W + K N AH + W+P
Sbjct: 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-----NAHTIGCNAVSWAP 160
Query: 457 TGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYI---LSAGVDKTTIIW-DAASG 512
++ +L H ++ NYI S G D +W + G
Sbjct: 161 A-------------VVPGSLIDHPS-------GQKPNYIKRFASGGCDNLIKLWKEEEDG 200
Query: 513 QC--EQQFSFHSAPALDVDWQSN-----TSFASCSTDQHIHV 547
Q EQ+ HS DV W + ++ ASCS D + +
Sbjct: 201 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 107/278 (38%), Gaps = 61/278 (21%)
Query: 121 TLPLWDVERGE--CLNTLTRHTEPVYSVAFSPD--GKFLASGSFDKCVHIWSARTGQLVH 176
++ ++DV G + L H PV+ VA++ G LAS S+D+ V IW G
Sbjct: 36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95
Query: 177 SYKGTG---GIFEVCW------------NSRGT---------------PPNPPESMEVDA 206
S++ G + VCW +S G N ++ +A
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155
Query: 207 SIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPKELQI- 264
P LI H S N +K F ASG D+ ++W + D K+ ++L+
Sbjct: 156 VSWAPAVVPGSLIDHPSGQKP---NYIKRF-ASGGCDNLIKLWKEEEDGQWKEEQKLEAH 211
Query: 265 --VLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKST-----L 317
+R +P+ S +A+ S DG IWT D + +T L
Sbjct: 212 SDWVRDVAWAPSIGLPT-------------STIASCSQDGRVFIWTCDDASSNTWSPKLL 258
Query: 318 GQHKGPIFALKWNKRGNYILSAGVDKTTIIW-DAASGQ 354
+ ++ + W+ N + +G D +W ++ GQ
Sbjct: 259 HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQ 296
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 117/346 (33%), Gaps = 96/346 (27%)
Query: 133 LNTL-TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS 191
+NT+ T H + ++ G LA+ S D+ V I+ R G
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG------------------- 45
Query: 192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAW-NPV-KDFLASGSGDSTARIW 249
Q L GHE V+ AW +P+ + LAS S D IW
Sbjct: 46 -------------------GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 250 DMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDW--NNNGSFLATGSYDGYARIW 307
+ T + E + V S+ W ++ G LA GS DG +
Sbjct: 87 REENGTWEKSHE--------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132
Query: 308 TSDG----SLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHS 363
T G +K H A+ W + V ++I D SGQ
Sbjct: 133 TYTGEGQWEVKKINNAHTIGCNAVSW--------APAVVPGSLI-DHPSGQKPNYIK--- 180
Query: 364 APALDVDWQSNTSFASCSTDQHIHVCKLHSD---KPVKSFEGHTNEVNAIKWDPQ-GL-- 417
FAS D I + K D K + E H++ V + W P GL
Sbjct: 181 ------------RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228
Query: 418 -LLASCSDDMTLKIWSLDKDN----CVHDLQAHNKEIYTIKWSPTG 458
+ASCS D + IW+ D + L N ++ + WS T
Sbjct: 229 STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA 274
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 321 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 376
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 377 FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL--- 433
S S D ++ +L D+ +K+ GH + A+ +P L S S D + WS
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSX 367
Query: 434 --DKDNCVHDL-QAHNKEIYTIKWSPT 457
D N + L + +E +I W T
Sbjct: 368 HQDHSNLIVSLDNSKAQEYSSISWDDT 394
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 480 KGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSA----PALDVDWQSNTS 535
+G IFAL W + + G D T +WD + +C Q+++ + V N
Sbjct: 253 QGGIFALSWLDSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 536 FASCSTDQHIHVCKLHSDKPVKSFEGHTTG 565
S S D ++ +L D+ +K+ GH G
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKG 341
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 97 LNSQRTNNPSTGPAITNGEEVHRL----TLPLWDVERGECLNTLTRHTEPVYSVAFSPDG 152
L+ Q+ N G T + L TL +++ E L T++ H + + ++ +P
Sbjct: 292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP-- 349
Query: 153 KFLASGSFDKCVHIWSARTGQLVHS 177
L SGS+D + WS+ + HS
Sbjct: 350 --LISGSYDGRIXEWSSSSXHQDHS 372
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 75/348 (21%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
H++++F + + F S SGD ++WD ++PK+ H + K G
Sbjct: 14 AHDADIF--SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKS--YSHFVHKSGLH--- 66
Query: 280 NKDVTSLDWNNNGSF----LATGSYDG---YARIWTSDGSLKSTLGQ--------HKGPI 324
V L +F +AT S+ G + RI D + K + K
Sbjct: 67 --HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 124
Query: 325 FALKWNKRGNYILS-----AGVDKTTIIWDAASGQCEQQ-FSFHSAPALD---------- 368
+ALKW + +LS V TT IW E + + +P L+
Sbjct: 125 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 184
Query: 369 -------VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFE------GHTNEVNAIKWDPQ 415
VD A+ + + + +L + +P+ +FE ++N + ++K+ PQ
Sbjct: 185 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244
Query: 416 GLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKST 475
G LLA D + C+ +Y ++ S P S +++
Sbjct: 245 GSLLAIAHDSNSF--------GCI--------TLYETEFGERIGSLSVPTHS----SQAS 284
Query: 476 LGQ--HKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFH 521
LG+ H + +L +N G + SAG D WD + + + H
Sbjct: 285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D + + + +D V F EGH +EV + +D G + SC D +LK+W +
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
+ ++ + KE Y ++P + + F ST H+ + ++W G+
Sbjct: 227 NSKRMMNAI----KESY--DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--LGD 278
Query: 494 YILSAGVDKTTIIW 507
ILS + + W
Sbjct: 279 LILSKSCENAIVCW 292
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D + + + +D V F EGH +EV + +D G + SC D +LK+W +
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
+ ++ + KE Y ++P + + F ST H+ + ++W G+
Sbjct: 186 NSKRMMNAI----KESY--DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--LGD 237
Query: 494 YILSAGVDKTTIIW 507
ILS + + W
Sbjct: 238 LILSKSCENAIVCW 251
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D + + + +D V F EGH +EV + +D G + SC D +LK+W +
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
+ ++ + KE Y ++P + + F ST H+ + ++W G+
Sbjct: 190 NSKRMMNAI----KESY--DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--LGD 241
Query: 494 YILSAGVDKTTIIW 507
ILS + + W
Sbjct: 242 LILSKSCENAIVCW 255
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D + + + +D V F EGH +EV + +D G + SC D +LK+W +
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
+ ++ + KE Y ++P + + F ST H+ + ++W G+
Sbjct: 190 NSKRMMNAI----KESY--DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--LGD 241
Query: 494 YILSAGVDKTTIIW 507
ILS + + W
Sbjct: 242 LILSKSCENAIVCW 255
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 377 FASCSTDQHIHVCKLHSDKPVKSF---EGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
S S D + + + +D V F EGH +EV + +D G + SC D +LK+W +
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 434 DKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGN 493
+ ++ + KE Y ++P + + F ST H+ + ++W G+
Sbjct: 191 NSKRMMNAI----KESY--DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--LGD 242
Query: 494 YILSAGVDKTTIIW 507
ILS + + W
Sbjct: 243 LILSKSCENAIVCW 256
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 132/321 (41%), Gaps = 70/321 (21%)
Query: 103 NNPSTGPAITNGEEVHRLTLPLWDV-ERGECLNTLTR---HTEPVYSVAF-SPDGKFLAS 157
NN A+ NG +L L+ E +N++ R H+ V +V F + LAS
Sbjct: 78 NNKIIAGALDNG------SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131
Query: 158 GSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATK 217
G + + IW K T S TP P +SM +S++
Sbjct: 132 GGNNGEIFIWDMN--------KCTESP------SNYTPLTPGQSM---SSVD-------- 166
Query: 218 LIGHESEVFICAWN-PVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
EV AWN + AS + A IWD+ K KE+ I L + G +
Sbjct: 167 ------EVISLAWNQSLAHVFASAGSSNFASIWDL-----KAKKEV-IHLSYTSPNSGIK 214
Query: 277 VPSNKDVTSLDW---NNNGSFLATGS-YDGYARIW---TSDGSLKSTLGQHKGPIFALKW 329
+ ++ ++W N+ ATGS D IW ++ L++ H+ I +L W
Sbjct: 215 ----QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 330 -NKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHV 388
++ + +LS+G D T ++W+ S + QF PA +W T FA + D +
Sbjct: 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-----PARG-NWCFKTKFAPEAPD--LFA 322
Query: 389 CKLHSDK-PVKSFEGHTNEVN 408
C +K V++ + TN ++
Sbjct: 323 CASFDNKIEVQTLQNLTNTLD 343
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 62/312 (19%), Positives = 119/312 (38%), Gaps = 80/312 (25%)
Query: 238 ASGSGDSTARIWDMTDSTKKDP-KELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
A+ S DS+ +W + + + P LQ+ + LDW++N +A
Sbjct: 39 ANFSTDSSLELWSLLAADSEKPIASLQV---------------DSKFNDLDWSHNNKIIA 83
Query: 297 TGSYDGYARIWTSDGSLKST-----LGQHKGPIFALKWN-KRGNYILSAGVDKTTIIWDA 350
+G +++++ + + H + +K+N K+ N + S G + IWD
Sbjct: 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143
Query: 351 ASGQCEQQFSFHSA-----------PALDVDWQSNTS--FASCSTDQHIHVCKLHSDKPV 397
+C + S ++ + + W + + FAS + + L + K V
Sbjct: 144 --NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201
Query: 398 KSFE------GHTNEVNAIKWDPQG---LLLASCSD-DMTLKIWSLDKDNCVHDLQAHNK 447
G +++ ++W P+ + A+ SD D ++ IW L N LQ N+
Sbjct: 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--PLQTLNQ 259
Query: 448 EIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKW-NKRGNYILSAGVDKTTII 506
G KG I +L W ++ + +LS+G D T ++
Sbjct: 260 -----------------------------GHQKG-ILSLDWCHQDEHLLLSSGRDNTVLL 289
Query: 507 WDAASGQCEQQF 518
W+ S + QF
Sbjct: 290 WNPESAEQLSQF 301
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 385 HIHVCKLHSDKPVKSFEG-----HTNEVNAIKWDPQGLLLASCSDDMTL-KIWSLDKDNC 438
IHV +L +D +G H N V ++ + +G ++A+CS D TL +++ D
Sbjct: 155 QIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVL 214
Query: 439 VHDLQ--AHNKEIYTIKWSPTGPETS 462
V + + I ++WSP G + +
Sbjct: 215 VREFRRGLDRTSIIDMRWSPDGSKLA 240
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 19/198 (9%)
Query: 275 TEVPSNKDVTSLDWN-NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWN 330
T P ++ VTSL+W+ + + +A GS G +W D K++ Q GP I +K+N
Sbjct: 67 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN 126
Query: 331 K-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-----VDWQSNTSFASCSTDQ 384
+ N + + + T + D SG Q F+ + D VD + +
Sbjct: 127 QFNTNQLFVSSIRGATTLRDF-SGSVIQVFA--KTDSWDYWYCCVDVSVSRQMLATGDST 183
Query: 385 HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSL----DKDNCV 439
+ + + H +V +++P+ L+A+ S D T+K+W L DK++ +
Sbjct: 184 GRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 243
Query: 440 HDLQAHNKEIYTIKWSPT 457
++ H K + ++PT
Sbjct: 244 AEM-PHEKPVNAAYFNPT 260
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 19/198 (9%)
Query: 275 TEVPSNKDVTSLDWN-NNGSFLATGSYDGYARIWTSDGSLKSTLGQHKGP---IFALKWN 330
T P ++ VTSL+W+ + + +A GS G +W D K++ Q GP I +K+N
Sbjct: 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN 127
Query: 331 K-RGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALD-----VDWQSNTSFASCSTDQ 384
+ N + + + T + D SG Q F+ + D VD + +
Sbjct: 128 QFNTNQLFVSSIRGATTLRDF-SGSVIQVFA--KTDSWDYWYCCVDVSVSRQMLATGDST 184
Query: 385 HIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQ-GLLLASCSDDMTLKIWSL----DKDNCV 439
+ + + H +V +++P+ L+A+ S D T+K+W L DK++ +
Sbjct: 185 GRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244
Query: 440 HDLQAHNKEIYTIKWSPT 457
++ H K + ++PT
Sbjct: 245 AEM-PHEKPVNAAYFNPT 261
>pdb|2Z8Z|A Chain A, Crystal Structure Of A Platinum-Bound S445c Mutant Of
Pseudomonas Sp. Mis38 Lipase
Length = 617
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPES 201
P+ + DGK A G+F ++ +++ Y G + E+ RGT P E+
Sbjct: 91 PITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTS-GPREN 149
Query: 202 MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPK 260
+ +D+ IG + A+ P KD+ + G++ + D+ K +
Sbjct: 150 LILDS------------IGDVINDLLAAFGP-KDYAKNYVGEAFGNLLNDVVAFAKANGL 196
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQH 320
+ VL S GG V S D++ W G F A +Y YA S +G
Sbjct: 197 SGKDVLVSGHSLGGLAVNSMADLSGGKW---GGFFADSNYIAYASPTQSSTDKVLNVGYE 253
Query: 321 KGPIF 325
P+F
Sbjct: 254 NDPVF 258
>pdb|2Z8X|A Chain A, Crystal Structure Of Extracellular Lipase From Pseudomonas
Sp. Mis38
pdb|2ZVD|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|2ZVD|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|3A6Z|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A6Z|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A70|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
pdb|3A70|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
Length = 617
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPES 201
P+ + DGK A G+F ++ +++ Y G + E+ RGT P E+
Sbjct: 91 PITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTS-GPREN 149
Query: 202 MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPK 260
+ +D+ IG + A+ P KD+ + G++ + D+ K +
Sbjct: 150 LILDS------------IGDVINDLLAAFGP-KDYAKNYVGEAFGNLLNDVVAFAKANGL 196
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQH 320
+ VL S GG V S D++ W G F A +Y YA S +G
Sbjct: 197 SGKDVLVSGHSLGGLAVNSMADLSGGKW---GGFFADSNYIAYASPTQSSTDKVLNVGYE 253
Query: 321 KGPIF 325
P+F
Sbjct: 254 NDPVF 258
>pdb|2ZJ6|A Chain A, Crystal Structure Of D337a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPES 201
P+ + DGK A G+F ++ +++ Y G + E+ RGT P E+
Sbjct: 91 PITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTS-GPREN 149
Query: 202 MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPK 260
+ +D+ IG + A+ P KD+ + G++ + D+ K +
Sbjct: 150 LILDS------------IGDVINDLLAAFGP-KDYAKNYVGEAFGNLLNDVVAFAKANGL 196
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQH 320
+ VL S GG V S D++ W G F A +Y YA S +G
Sbjct: 197 SGKDVLVSGHSLGGLAVNSMADLSGGKW---GGFFADSNYIAYASPTQSSTDKVLNVGYE 253
Query: 321 KGPIF 325
P+F
Sbjct: 254 NDPVF 258
>pdb|2ZJ7|A Chain A, Crystal Structure Of D157a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 18/185 (9%)
Query: 142 PVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGTPPNPPES 201
P+ + DGK A G+F ++ +++ Y G + E+ RGT P E+
Sbjct: 91 PITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTS-GPREN 149
Query: 202 MEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIW-DMTDSTKKDPK 260
+ +D+ IG + A+ P KD+ + G++ + D+ K +
Sbjct: 150 LILDS------------IGAVINDLLAAFGP-KDYAKNYVGEAFGNLLNDVVAFAKANGL 196
Query: 261 ELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLKSTLGQH 320
+ VL S GG V S D++ W G F A +Y YA S +G
Sbjct: 197 SGKDVLVSGHSLGGLAVNSMADLSGGKW---GGFFADSNYIAYASPTQSSTDKVLNVGYE 253
Query: 321 KGPIF 325
P+F
Sbjct: 254 NDPVF 258
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 126 DVERGECLNT---LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH 176
D G C++ + +H Y +A PDGK+ G+ D IW+ G+LV+
Sbjct: 26 DKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWNGMVGELVY 76
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 126 DVERGECLNT---LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH 176
D G C++ + +H Y +A PDGK+ G+ D IW+ G+LV+
Sbjct: 28 DKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWNGMVGELVY 78
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 126 DVERGECLNT---LTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVH 176
D G C++ + +H Y +A PDGK+ G+ D IW+ G+LV+
Sbjct: 26 DKYEGYCVDLASEIAKHIGIKYKIAIVPDGKY---GARDADTKIWNGMVGELVY 76
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 221 HESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRH-----CISKGG 274
H+ +V A NP D FLA+ S D T +IWD+ K + RH C S G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 275 TEV 277
+
Sbjct: 309 ARL 311
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 221 HESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRH-----CISKGG 274
H+ +V A NP D FLA+ S D T +IWD+ K + RH C S G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 275 TEV 277
+
Sbjct: 309 ARL 311
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 221 HESEVFICAWNPVKD-FLASGSGDSTARIWDMTDSTKKDPKELQIVLRH-----CISKGG 274
H+ +V A NP D FLA+ S D T +IWD+ K + RH C S G
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 275 TEV 277
+
Sbjct: 310 ARL 312
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 542 DQHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRG 586
D+H H+ L++ + K + H G+L+ Y G I+E W+ G
Sbjct: 128 DRHEHLSPLYTTERYKEYYAHQLGELMSDY---GKIWETWWDGAG 169
>pdb|3GFV|A Chain A, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
pdb|3GFV|B Chain B, Crystal Structure Of Petrobactin-Binding Protein Yclq From
Bacillu Subtilis
Length = 303
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSN-KDVTSLDW 288
T S D K+ QI ++H + K GT+VP N K V D+
Sbjct: 5 TSSKGSDTKKEQITVKHQLDKNGTKVPKNPKKVVVFDF 42
>pdb|1PVX|A Chain A, Do-1,4-Beta-Xylanase, Room Temperature, Ph 4.5
Length = 194
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 298 GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
G +DGY W SDG ST + G + + W GN + G
Sbjct: 8 GWHDGYYYSWWSDGGGDSTYTNNSGGTYEITWGNGGNLVGGKG 50
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 375 TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSL 433
T S D + V L +KS+ H++EVN + P + + SC +D + +W
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
Query: 434 DKDNCVH--DLQAHNKEIYTIKWSPTGPET-----SNPNMSLIFILKSTLGQ----HKGP 482
K D A + ++ W P +T N+SL+ I Q H
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271
Query: 483 IFALKWNKRGN-YILSAGVDKTTIIWDA 509
I L ++ + ++ S D T + DA
Sbjct: 272 ITGLAYSYHSSPFLASISEDCTVAVLDA 299
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T PV S+ FSP KFL + D + W+ +T + + ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T PV S+ FSP KFL + D + W+ +T + + ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T PV S+ FSP KFL + D + W+ +T + + ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 137 TRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSY 178
T PV S+ FSP KFL + D + W+ +T + + ++
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1YNA|A Chain A, Endo-1,4-Beta-Xylanase, Room Temperature, Ph 4.0
Length = 194
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 298 GSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG 340
G +DGY W SDG ++T +G + + W GN + G
Sbjct: 8 GWHDGYYYSWWSDGGAQATYTNLEGGTYEISWGDGGNLVGGKG 50
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD---LQAHNKEIYT 451
K ++F H V + W P+ + +CS D ++ D L N+
Sbjct: 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATF 105
Query: 452 IKWSP 456
++WSP
Sbjct: 106 VRWSP 110
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 236 FLASGSGDSTARIW-----DMTDSTKKDPKELQIVLRHCISK 272
+LA+GS D A IW D+ D KKD K + C+++
Sbjct: 271 YLAAGSLDKVASIWLSEFPDLEDKLKKDNKTIYEAHSECLTE 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,386,276
Number of Sequences: 62578
Number of extensions: 914483
Number of successful extensions: 3863
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 790
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)