RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12697
(602 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 207 bits (529), Expect = 2e-62
Identities = 91/331 (27%), Positives = 141/331 (42%), Gaps = 53/331 (16%)
Query: 220 GHESEVFICAWNPVKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPS 279
GH V A++P LA+GSGD T ++WD+ + EL L KG T
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL------ETGELLRTL-----KGHT---- 51
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILS 338
V + + +G++LA+GS D R+W G TL H + ++ ++ G + S
Sbjct: 52 -GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110
Query: 339 AGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSF-ASCSTDQHIHVCKLHSDKPV 397
+ DKT +WD +G+C H+ V + + +F AS S D I + L + K V
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
Query: 398 KSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPT 457
+ GHT EVN++ + P G L S S D T+K+W L C+ L+ H + ++ +SP
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 458 GPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ 517
G + S D T +WD +G+C Q
Sbjct: 231 G----------------------------------YLLASGSEDGTIRVWDLRTGECVQT 256
Query: 518 FSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
S H+ + W + AS S D I +
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
Score = 203 bits (519), Expect = 7e-61
Identities = 95/379 (25%), Positives = 150/379 (39%), Gaps = 92/379 (24%)
Query: 132 CLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNS 191
TL HT V VAFSPDGK LA+GS D + +W TG+L+ + KG
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------- 49
Query: 192 RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDM 251
H V A + +LASGS D T R+WD+
Sbjct: 50 -----------------------------HTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
Query: 252 TDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIW-TSD 310
+ + ++ + H V+S+ ++ +G L++ S D ++W
Sbjct: 81 -----ETGECVRTLTGHT-----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 311 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVD 370
G +TL H + ++ ++ G ++ S+ D T +WD +G+C + H+ V
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 371 W-QSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK 429
+ S S+D I + L + K + + GH N VN++ + P G LLAS S+D T++
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244
Query: 430 IWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWN 489
+W L CV L H + ++ WSP G
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDG------------------------------- 273
Query: 490 KRGNYILSAGVDKTTIIWD 508
+ S D T IWD
Sbjct: 274 ---KRLASGSADGTIRIWD 289
Score = 192 bits (489), Expect = 2e-56
Identities = 93/314 (29%), Positives = 139/314 (44%), Gaps = 58/314 (18%)
Query: 121 TLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYKG 180
T+ +WD+E GE L TL HT PV VA S DG +LASGS DK + +W TG+ V + G
Sbjct: 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91
Query: 181 TGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASG 240
H S V A++P L+S
Sbjct: 92 ----------------------------------------HTSYVSSVAFSPDGRILSSS 111
Query: 241 SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSY 300
S D T ++WD+ + LR V S+ ++ +G+F+A+ S
Sbjct: 112 SRDKTIKVWDVET------GKCLTTLRGH----------TDWVNSVAFSPDGTFVASSSQ 155
Query: 301 DGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQF 359
DG ++W G +TL H G + ++ ++ G +LS+ D T +WD ++G+C
Sbjct: 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215
Query: 360 SFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL 418
H V + + AS S D I V L + + V++ GHTN V ++ W P G
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275
Query: 419 LASCSDDMTLKIWS 432
LAS S D T++IW
Sbjct: 276 LASGSADGTIRIWD 289
Score = 167 bits (424), Expect = 3e-47
Identities = 73/296 (24%), Positives = 144/296 (48%), Gaps = 21/296 (7%)
Query: 313 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQ 372
L+ TL H G + + ++ G + + D T +WD +G+ + H+ P DV
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 373 SN-TSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIW 431
++ T AS S+D+ I + L + + V++ GHT+ V+++ + P G +L+S S D T+K+W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 432 SLDKDNCVHDLQAHNKEIYTIKWSPTGP--ETSNPNMSLIFI------LKSTLGQHKGPI 483
++ C+ L+ H + ++ +SP G +S+ + ++ +TL H G +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180
Query: 484 FALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS-FASCSTD 542
++ ++ G +LS+ D T +WD ++G+C H V + + AS S D
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 543 QHIHVCKLHSDKPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
I V L + + V++ GH T + + W+ G ++ + ++DG++
Sbjct: 241 GTIRVWDLRTGECVQTLSGH-----------TNSVTSLAWSPDGKRLASGSADGTI 285
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 138 bits (348), Expect = 3e-35
Identities = 100/366 (27%), Positives = 174/366 (47%), Gaps = 33/366 (9%)
Query: 83 DAVLPDFVANRQNQLNSQRTNNPSTGPAITNGEEVHRLTLPLWDVE-RGECLNTLTRHTE 141
+ ++ + ++ ++P + + T+ LWD+ G+ + TL H+E
Sbjct: 98 EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG-TVKLWDLSTPGKLIRTLEGHSE 156
Query: 142 PVYSVAFSPDGKFLASGS-FDKCVHIWSARTGQLVHSYKG-TGGIFEVCWNSRGTPPNPP 199
V S+AFSPDGK LASGS D + +W RTG+ + + G T + + ++ G
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 200 ESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKDFLASGSGDSTARIWDMTDS 254
S D +I + + + L GH V + +++P LASGS D T R+WD
Sbjct: 217 GSS--DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD---- 269
Query: 255 TKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATGSYDGYARIWTSDGSLK 314
+ L+ + H + V S+ ++ +G LA+GS DG R+W +
Sbjct: 270 LRSSSSLLRTLSGH-----------SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318
Query: 315 S---TLGQHKGPIFALKWNKRGNYILSAGV-DKTTIIWDAASGQCEQQFSFHSAPALDVD 370
TL H+GP+ +L ++ G+ ++S G D T +WD +G+ + HS L V
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVS 377
Query: 371 WQSNT-SFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLK 429
+ + +S STD + + L + +++ +GHT+ V ++ + P G LAS S D T++
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437
Query: 430 IWSLDK 435
+W L
Sbjct: 438 LWDLKT 443
Score = 135 bits (340), Expect = 3e-34
Identities = 105/410 (25%), Positives = 182/410 (44%), Gaps = 43/410 (10%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQ-LVHSYKG--TGGIFEVCWNS 191
L H + + S+AFSPDG+ L SGS D + +W G+ L+ S +G + ++ +S
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 192 RGTPPNPPESMEVDASIEI-----PQSKATKLIGHESEVFICAWNPVKDFLASGSG-DST 245
S +D ++++ P L GH V A++P LASGS D T
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179
Query: 246 ARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSF-LATGSYDGYA 304
++WD+ + K L + H V+SL ++ +G +A+GS DG
Sbjct: 180 IKLWDL-----RTGKPLSTLAGH-----------TDPVSSLAFSPDGGLLIASGSSDGTI 223
Query: 305 RIW--TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASG-QCEQQFSF 361
R+W ++ L+STL H + + ++ G+ + S D T +WD S + S
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282
Query: 362 HSAPALDVDWQSNTS-FASCSTDQHIHVCKL--HSDKPVKSFEGHTNEVNAIKWDPQG-L 417
HS+ L V + + AS S+D + + L + +GH V+++ + P G L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 418 LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPE-TSNPNMSLIFI----- 471
L++ SDD T+++W L + L+ H+ + ++ +SP G +S + +
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401
Query: 472 --LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQQFS 519
L L H + +L ++ G + S D T +WD + FS
Sbjct: 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Score = 95.2 bits (235), Expect = 1e-20
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 54/295 (18%)
Query: 314 KSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCE--QQFSFHSAPALDVDW 371
L H+ I ++ ++ G +LS D T +WD +G+ H + +
Sbjct: 58 SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 372 QSNTS----FASCSTDQHIHVCKLHSD-KPVKSFEGHTNEVNAIKWDPQGLLLASCSD-D 425
S AS S D + + L + K +++ EGH+ V ++ + P G LLAS S D
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 426 MTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFA 485
T+K+W L + L H + ++ +SP G
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-------------------------- 211
Query: 486 LKWNKRGNYILSAGVDKTTIIWDAASGQCEQQ-FSFHSAPALDVDWQSNTSFASCSTDQH 544
I S D T +WD ++G+ + S HS + + AS S+D
Sbjct: 212 -------LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264
Query: 545 IHVCKLHSD-KPVKSFEGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSV 598
I + L S +++ GH+ + V ++ G + + +SDG+V
Sbjct: 265 IRLWDLRSSSSLLRTLSGHS-----------SSVLSVAFSPDGKLLASGSSDGTV 308
Score = 86.3 bits (212), Expect = 7e-18
Identities = 70/243 (28%), Positives = 98/243 (40%), Gaps = 58/243 (23%)
Query: 121 TLPLWDVERG-ECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHSYK 179
T+ LWD+ L TL+ H+ V SVAFSPDGK LASGS D V +W TG+L+ S
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-- 321
Query: 180 GTGGIFEVCWNSRGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
L GHE V +++P L S
Sbjct: 322 ------------------------------------LTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 240 G-SGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLATG 298
G S D T R+WD+ E +V S+ ++ +G +++G
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGH-----------------SNVLSVSFSPDGRVVSSG 388
Query: 299 SYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCEQ 357
S DG R+W S GSL L H + +L ++ G + S D T +WD +
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
Query: 358 QFS 360
FS
Sbjct: 449 SFS 451
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 55.8 bits (135), Expect = 2e-10
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
GE L TL HT PV SVAFSPDGK+LASGS D + +W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 51.9 bits (125), Expect = 5e-09
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 393 SDKPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
S + +K+ +GHT V ++ + P G LAS SDD T+K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 42.7 bits (101), Expect = 9e-06
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 310 DGSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
G L TL H GP+ ++ ++ G Y+ S D T +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 218 LIGHESEVFICAWNPVKDFLASGSGDSTARIWD 250
L GH V A++P +LASGS D T ++WD
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 40.8 bits (96), Expect = 4e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
L TL H GP+ ++ ++ G Y+ S D T +WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW 307
VTS+ ++ +G +LA+GS DG ++W
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 30.4 bits (69), Expect = 0.19
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 352 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 388
SG+ + H+ P V + + AS S D I +
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 30.4 bits (69), Expect = 0.19
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 511 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
SG+ + H+ P V + + AS S D I +
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKL 38
Score = 27.3 bits (61), Expect = 2.3
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 564 TGQLVHSYKG-TGGIFEVCWNSRGDKVGASASDGSV 598
+G+L+ + KG TG + V ++ G + + + DG++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI 36
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 53.9 bits (130), Expect = 8e-10
Identities = 24/39 (61%), Positives = 26/39 (66%)
Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWS 168
G+ L TL HT PV SVAFSPDG LASGS D V +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 52.0 bits (125), Expect = 4e-09
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 395 KPVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWS 432
K +++ +GHT V ++ + P G LLAS SDD T+++W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 42.7 bits (101), Expect = 7e-06
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 216 TKLIGHESEVFICAWNPVKDFLASGSGDSTARIWD 250
L GH V A++P + LASGS D T R+WD
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.8 bits (96), Expect = 3e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 311 GSLKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 349
G L TL H GP+ ++ ++ GN + S D T +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 39.6 bits (93), Expect = 8e-05
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 280 NKDVTSLDWNNNGSFLATGSYDGYARIW 307
VTS+ ++ +G+ LA+GS DG R+W
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 39.6 bits (93), Expect = 9e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 472 LKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWD 508
L TL H GP+ ++ ++ GN + S D T +WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 353 GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 388
G+ + H+ P V + + + AS S D + V
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 512 GQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHV 547
G+ + H+ P V + + + AS S D + V
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 56.9 bits (137), Expect = 2e-08
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 217 KLIGHESEVFICAWNPV-KDFLASGSGDSTARIWDM--TDSTKKDPKELQIVLRHCISKG 273
KL GH S + +NP + LASGS D T R+W++ D + K+ K+ Q CI KG
Sbjct: 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ-----CILKG 123
Query: 274 GTEVPSNKDVTSLDWNN-NGSFLATGSYDGYARIWTSDGSLKSTLGQHKGPIFALKWNKR 332
K ++ +DWN N + + +D + IW + ++ + +LKWN +
Sbjct: 124 -----HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178
Query: 333 GNYILSAGVDKTTIIWDAASGQCEQQFSFHS 363
GN + V K I D + F H
Sbjct: 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209
Score = 46.9 bits (111), Expect = 3e-05
Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 51/163 (31%)
Query: 136 LTRHTEPVYSVAFSP-DGKFLASGSFDKCVHIWSARTGQLVHSYKGTGGIFEVCWNSRGT 194
L HT + + F+P + LASGS D + +W
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI------------------------- 104
Query: 195 PPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLASGSG-DSTARIWDMTD 253
P+ ES++ I+ PQ L GH+ ++ I WNP+ ++ SG DS IWD+
Sbjct: 105 -PHNDESVK---EIKDPQ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI-- 155
Query: 254 STKKDPKELQIVLRHCISKGGTEVPSNKDVTSLDWNNNGSFLA 296
+ + + QI + K ++SL WN G+ L+
Sbjct: 156 --ENEKRAFQINM-------------PKKLSSLKWNIKGNLLS 183
Score = 45.7 bits (108), Expect = 6e-05
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 30/174 (17%)
Query: 396 PVKSFEGHTNEVNAIKWDP-QGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
PV +GHT+ + ++++P +LAS S+D+T+++W + HN E ++K
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI----------PHNDE--SVK- 112
Query: 455 SPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQ 513
E +P ILK HK I + WN YI+ S+G D IWD + +
Sbjct: 113 -----EIKDPQC----ILKG----HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
Query: 514 CEQQFSF-HSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ 566
Q + +L + + N +C +H+H+ + SF H G+
Sbjct: 160 RAFQINMPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGK 212
>gnl|CDD|149534 pfam08513, LisH, LisH. The LisH (lis homology) domain mediates
protein dimerisation and tetramerisation. The LisH
domain is found in Sif2, a component of the Set3
complex which is responsible for repressing meiotic
genes. It has been shown that the LisH domain helps
mediate interaction with components of the Set3
complex.
Length = 27
Score = 49.2 bits (119), Expect = 3e-08
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 6 DEVNFLVYRYLQESGFQHSAYTFGIES 32
+E+N L+Y YL +SG++ +A F ES
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif.
Alpha-helical motif present in Lis1, treacle, Nopp140,
some katanin p60 subunits, muskelin, tonneau, LEUNIG
and numerous WD40 repeat-containing proteins. It is
suggested that LisH motifs contribute to the regulation
of microtubule dynamics, either by mediating
dimerisation, or else by binding cytoplasmic dynein
heavy chain or microtubules directly.
Length = 34
Score = 42.0 bits (100), Expect = 1e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 SSDEVNFLVYRYLQESGFQHSAYTFGIESHISQ 36
S E+N L+ YL +G++ +A T ES +S
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGLSL 34
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 45.3 bits (107), Expect = 7e-05
Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 41/248 (16%)
Query: 218 LIGHESEVFICAWNP-VKDFLASGSGDSTARIWDMTDSTKKDPKELQIVLRHCISKGGTE 276
L GH +V I +++P + LAS D +WD+
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----------------AVEV 163
Query: 277 VPSNKD-VTSLDWNNNGSFLATGSYDGYARIWT-SDGSLKSTLGQHKGPIFA-LKWNKRG 333
+ + D +TSL+WN +GS L T S D I DG++ S++ H W KR
Sbjct: 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223
Query: 334 NYILSAGVDKT----TIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVC 389
+ I++ G K+ ++WD + +S +D+D S D ++
Sbjct: 224 DLIITLGCSKSQQRQIMLWDTR--KMASPYS-----TVDLDQSSALFIPFFDEDTNLLYI 276
Query: 390 KLHSDKPVKSFEGHTNE--VNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHD--LQAH 445
+ ++ FE NE + C M K WSLD C
Sbjct: 277 GSKGEGNIRCFE-LMNERLTFCSSYSSVEPHKGLC---MMPK-WSLDTRKCEIARFYALT 331
Query: 446 NKEIYTIK 453
+YTI+
Sbjct: 332 YHSLYTIQ 339
Score = 43.0 bits (101), Expect = 4e-04
Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 57/237 (24%)
Query: 341 VDKTTIIWDAASG-QCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKP-VK 398
V +T +WD ++ C +F + V WQ S + +H KL S+ P +
Sbjct: 23 VTPSTALWDCSNTIACNDRF-------IAVPWQQ---LGSTAVLKHTDYGKLASNPPILL 72
Query: 399 SFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDK--------DNCVHDLQAHNKEIY 450
EG +V +DPQ L AS +D T+ W + + D VH LQ H K++
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVG 129
Query: 451 TIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAA 510
+ + P+ N + SAG D +WD
Sbjct: 130 IVSFHPSA---------------------------------MNVLASAGADMVVNVWDVE 156
Query: 511 SGQCEQQFSFHSAPALDVDWQSNTS-FASCSTDQHIHVCKLHSDKPVKSFEGHTTGQ 566
G+ + HS ++W + S + S D+ +++ V S E H + +
Sbjct: 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK 213
Score = 41.0 bits (96), Expect = 0.002
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDKCVHIWSARTGQLVHS 177
+WDVERG+ + + H++ + S+ ++ DG L + S DK ++I R G +V S
Sbjct: 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205
Score = 36.0 bits (83), Expect = 0.061
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 396 PVKSFEGHTNEVNAIKWDPQGL-LLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKW 454
P+ +GHT +V + + P + +LAS DM + +W +++ V ++ H+ +I +++W
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176
Query: 455 SPTGP-----------ETSNPNMSLIFILKSTLGQHKGPIFA-LKWNKRGNYILSAGVDK 502
+ G +P I S++ H W KR + I++ G K
Sbjct: 177 NLDGSLLCTTSKDKKLNIIDPRDGTIV---SSVEAHASAKSQRCLWAKRKDLIITLGCSK 233
Query: 503 T----TIIWDA------ASGQCEQQFSFHSAPALDVD 529
+ ++WD S Q S P D D
Sbjct: 234 SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED 270
Score = 32.2 bits (73), Expect = 0.99
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 317 LGQHKGPIFALKWNKRGNYIL-SAGVDKTTIIWDAASGQCEQQ----------------- 358
LGQ +GPI + +N L +A D T + W Q
Sbjct: 72 LGQ-EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130
Query: 359 FSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKSFEGHTNEVNAIKWDPQGLL 418
SFH + + AS D ++V + K V+ + H++++ +++W+ G L
Sbjct: 131 VSFHPS--------AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182
Query: 419 LASCSDDMTLKIWSLDKDNCVHDLQAH 445
L + S D L I V ++AH
Sbjct: 183 LCTTSKDKKLNIIDPRDGTIVSSVEAH 209
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 42.2 bits (100), Expect = 2e-04
Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 56/197 (28%)
Query: 410 IKWDPQG---LLLASCSDDMTLK----------IWSLDKDNCVHDLQAHNKEIYTIKWSP 456
+KW+ G L+L S D T K I + V +L I+ WSP
Sbjct: 11 MKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG-PIHDFAWSP 69
Query: 457 TGPE-----------TS--NPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAG---- 499
G E + + ++I L + P + W+ G +L AG
Sbjct: 70 NGKEFAVIYGYMPAKITFFDLKGNVIHSLG------EQPRNTIFWSPFGRLVLLAGFGNL 123
Query: 500 ---VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCSTDQHIHVCKLHSDK 554
++ WD + ++ + ++ A D +W S F + +T +L D
Sbjct: 124 AGQIE----FWDVKN--KKKIATAEASNATDCEW-SPDGRYFLTATT-----SPRLRVDN 171
Query: 555 PVKSFEGHTTGQLVHSY 571
K + H +G+LV+ Y
Sbjct: 172 GFKIW--HYSGKLVYKY 186
Score = 36.5 bits (85), Expect = 0.021
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 288 WNNNGS-FLATGSY-DGYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYILSAG----- 340
W+ NG F Y + G++ +LG + P + W+ G +L AG
Sbjct: 67 WSPNGKEFAVIYGYMPAKITFFDLKGNVIHSLG--EQPRNTIFWSPFGRLVLLAGFGNLA 124
Query: 341 --VDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTS--FASCST 382
++ WD + ++ + ++ A D +W S F + +T
Sbjct: 125 GQIE----FWDVKN--KKKIATAEASNATDCEW-SPDGRYFLTATT 163
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 43.5 bits (102), Expect = 3e-04
Identities = 36/164 (21%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 276 EVPSNKDVTSLDWNNN-GSFLATGSYDGYARIW-TSDGSLKSTLGQHKGPIFALKWNKRG 333
E+ S ++ + WN+ S +A+ +++G ++W + L + + +H+ ++++ ++
Sbjct: 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587
Query: 334 NYILSAGVDKTTI-IWDAASGQCEQQFSFHSAPALDVDWQSNT--SFASCSTDQHIHVCK 390
+L++G D ++ +W G A V + S + S A S D ++
Sbjct: 588 PTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYD 646
Query: 391 LHSDK-PVKSFEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSL 433
L + K P+ + GH+ V+ +++ L++S +D+ TLK+W L
Sbjct: 647 LRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDN-TLKLWDL 689
Score = 42.0 bits (98), Expect = 0.001
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 124 LWDVERGECLNTLTRHTEPVYSVAF-SPDGKFLASGSFDKCVHIWSARTGQLVHSYKGTG 182
+WDV R + + + H + V+S+ + S D LASGS D V +WS G + + K
Sbjct: 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA 618
Query: 183 GIFEVCWNS---RGTPPNPPESMEVDASIEIPQSKATKLIGHESEVFICAWNPVKDFLAS 239
I V + S R + + P+ +IGH V + L S
Sbjct: 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVS 677
Query: 240 GSGDSTARIWDMTDS 254
S D+T ++WD++ S
Sbjct: 678 SSTDNTLKLWDLSMS 692
>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. Members of this protein family are the
TolB periplasmic protein of Gram-negative bacteria. TolB
is part of the Tol-Pal (peptidoglycan-associated
lipoprotein) multiprotein complex, comprising five
envelope proteins, TolQ, TolR, TolA, TolB and Pal, which
form two complexes. The TolQ, TolR and TolA
inner-membrane proteins interact via their transmembrane
domains. The {beta}-propeller domain of the periplasmic
protein TolB is responsible for its interaction with
Pal. TolB also interacts with the outer-membrane
peptidoglycan-associated proteins Lpp and OmpA. TolA
undergoes a conformational change in response to changes
in the proton-motive force, and interacts with Pal in an
energy-dependent manner. The C-terminal periplasmic
domain of TolA also interacts with the N-terminal domain
of TolB. The Tol-PAL system is required for bacterial
outer membrane integrity. E. coli TolB is involved in
the tonB-independent uptake of group A colicins
(colicins A, E1, E2, E3 and K), and is necessary for the
colicins to reach their respective targets after initial
binding to the bacteria. It is also involved in uptake
of filamentous DNA. Study of its structure suggest that
the TolB protein might be involved in the recycling of
peptidoglycan or in its covalent linking with
lipoproteins. The Tol-Pal system is also implicated in
pathogenesis of E. coli, Haemophilus ducreyi ,
Salmonella enterica and Vibrio cholerae, but the
mechanism(s) is unclear [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 417
Score = 38.8 bits (91), Expect = 0.007
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDK---CVHIWSARTGQ--LVHSYKGT 181
G T+TR EP+ S A+SPDG+ LA SF+ +++ TGQ V S+ G
Sbjct: 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM 235
>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional.
Length = 433
Score = 37.7 bits (88), Expect = 0.016
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 119 RLTLPLWDVERGECLNTLTRHTEPVYSVAFSPDGKFLASGSFDK---CVHIWSARTGQ-- 173
R L + D + G T+ R EP+ S A+SPDGK LA SF++ +++ TGQ
Sbjct: 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE 241
Query: 174 LVHSYKGTGG 183
LV S++G G
Sbjct: 242 LVASFRGING 251
>gnl|CDD|224582 COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 407
Score = 35.1 bits (81), Expect = 0.11
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 31 ESHISQSNIDGALVPPAALLSIIQKGLQYTEAEISVGENGQEQRPTESLSLIDAVLPDFV 90
E + IDG LV P ++ Y + V E+ + + + I +L +
Sbjct: 89 EEAVKLGKIDGLLVIPRNFADTVEADE-YAGELVLVKEDISRLQADLTYARISKLLAEL- 146
Query: 91 ANRQNQLNSQRTNNPS--TGPAITNGEEVH 118
Q P P ++ G E
Sbjct: 147 -GLSVGERLQALGIPPKVDNPVVSEGGESL 175
>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional.
Length = 427
Score = 33.4 bits (77), Expect = 0.36
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 130 GECLNTLTRHTEPVYSVAFSPDGKFLASGSFDK---CVHIWSARTGQ--LVHSYKG 180
G+ + EP+ S A+SPDG LA SF+ V++ TG+ +V ++KG
Sbjct: 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG 240
>gnl|CDD|184228 PRK13671, PRK13671, hypothetical protein; Provisional.
Length = 298
Score = 32.4 bits (74), Expect = 0.58
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 445 HNKEIYTIKWSPTGPETSNPNMSLIFILKSTLGQHKGPIFALKWNKRGNYILSAGVDK 502
HN IY I + + PN +I IL Q +G I + KR L GVDK
Sbjct: 13 HNGHIYQINYI----KNKFPNEKIIVILSGKYTQ-RGEIAVASFEKRKKIALKYGVDK 65
>gnl|CDD|238285 cd00515, HAM1, NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against
mutagenesis by the base analog 6-N-hydroxylaminopurine
(HAP) in E. Coli and S. cerevisiae. A Ham1-related
protein from Methanococcus jannaschii is a novel NTPase
that has been shown to hydrolyze nonstandard nucleotides
such as XTP to XMP and ITP to IMP, but not the standard
nucleotides, in the presence of Mg or Mn ions. The
enzyme exists as a homodimer. The HAM1 protein may be
acting as an NTPase by hydrolyzing the HAP triphosphate.
Length = 183
Score = 31.7 bits (73), Expect = 0.71
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 550 LHSDKPVKSFEGHTTGQLVHSYKGTGG-----IFEVC 581
+ D FEG G++V +GTGG IF
Sbjct: 117 VDPDGEPLVFEGEVEGKIVTEPRGTGGFGYDPIFIPE 153
>gnl|CDD|222656 pfam14292, SusE, SusE outer membrane protein. This family includes
the SusE outer membrane protein from Bacteroides
thetaiotaomicron. This protein has a role in starch
utilisation, but is not essential for growth on starch.
Length = 122
Score = 30.8 bits (70), Expect = 0.76
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 416 GLLLASCSDDMTLKIW--------SLDKDNCVHDLQAHNKEIYTIKWSP 456
L L SC DD L + L A ++E T W+
Sbjct: 5 LLALTSCEDDDELTDLNPESAFELTAPASGTELVLDAASEEAVTFTWTA 53
>gnl|CDD|223205 COG0127, COG0127, Xanthosine triphosphate pyrophosphatase
[Nucleotide transport and metabolism].
Length = 194
Score = 31.0 bits (71), Expect = 1.1
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 5/40 (12%)
Query: 547 VCKLHSDKPVKSFEGHTTGQLVHSYKGTGG-----IFEVC 581
+ FEG G++ +G GG IF
Sbjct: 120 IVLARDGGEPIVFEGEVEGEIAREPRGEGGFGYDPIFIPE 159
>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional.
Length = 448
Score = 31.5 bits (72), Expect = 1.2
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDK---CVHIWSARTGQ--LVHSYKGTGG 183
L R EP+ S A+SPDG+ LA SF+ + + T V S+ G G
Sbjct: 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING 265
>gnl|CDD|216665 pfam01725, Ham1p_like, Ham1 family. This family consists of the
HAM1 protein and hypothetical archaeal bacterial and C.
elegans proteins. HAM1 controls 6-N-hydroxylaminopurine
(HAP) sensitivity and mutagenesis in S. cerevisiae
inosine triphosphate pyrophosphatase. The HAM1 protein
protects the cell from HAP, either on the level of
deoxynucleoside triphosphate or the DNA level by a yet
unidentified set of reactions.
Length = 181
Score = 30.2 bits (69), Expect = 2.0
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 553 DKPVKSFEGHTTGQLVHSYKGTGG-----IFEV 580
D V FEG G++ +G GG IF
Sbjct: 117 DGKVLVFEGIVEGEISEEPRGEGGFGYDPIFIP 149
>gnl|CDD|166839 PRK00178, tolB, translocation protein TolB; Provisional.
Length = 430
Score = 30.8 bits (70), Expect = 2.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFD 161
TL + EP+ S +SPDGK +A SF+
Sbjct: 193 TLLQSREPILSPRWSPDGKRIAYVSFE 219
>gnl|CDD|184905 PRK14941, PRK14941, DNA polymerase III subunit beta; Provisional.
Length = 374
Score = 30.5 bits (69), Expect = 2.3
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 43 LVPPAALLSIIQKGLQYTEAEISVGENGQEQR-PTESL----SLI-------DAVLP--- 87
+V PA +LSI+QK Q+ +S+ + R ++ +LI +AV+P
Sbjct: 197 IVVPARVLSILQKLAQHETVTMSIDSERRFVRFICGNVVLDAALIVEPYPNYEAVIPVEN 256
Query: 88 --DFVANRQNQLNSQR 101
V NR N +S +
Sbjct: 257 DKKLVINRSNIYDSVK 272
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 30.6 bits (69), Expect = 2.5
Identities = 44/278 (15%), Positives = 71/278 (25%), Gaps = 74/278 (26%)
Query: 340 GVDKTTIIWDAASGQCEQQFSFHSAPALDVDWQSNTSFASCSTDQHIHVCKLHSDKPVKS 399
I + + + WQ + H K KS
Sbjct: 199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT--------KSNKS 250
Query: 400 FEGHTNEVNAIKWDPQGLLLASCSDDMTLKIWSLDKDNCVHDLQAHNKEIYTIKWSPTGP 459
+ G +N L + + + + + + ++ W P
Sbjct: 251 YFGESN----------------------LYLLRITERSIPVEKDLKDP-VHDFTWEPLSS 287
Query: 460 E-----TSNPNMSLIFILKSTL------GQHKGPIFALKWNKRGNYILSAGVDKT---TI 505
P +F L+ L + F + YIL AG D
Sbjct: 288 RFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFF----SPHERYILFAGFDNLQGNIE 343
Query: 506 IWDAASGQCEQQFSFHSAPALD------VDWQSNTSFASCSTDQHIHVCKLHSDKPVKSF 559
I+D A F A A + DW + F T KL D +K +
Sbjct: 344 IFDPAG-------RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE----KLRVDNSIKLW 392
Query: 560 EGHTTGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGS 597
G V + + W+ G V S+S
Sbjct: 393 --DVYGAKVF------ELTNITWDPSGQYVTTSSSCPK 422
Score = 29.5 bits (66), Expect = 5.5
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 18/68 (26%)
Query: 130 GECLNTLTRHTEP-VYSVAFSPDGKFLAS----------------GSFDKCVHIWSARTG 172
G L R P V + FSP+ K+L + S + +W +G
Sbjct: 60 GPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVF-VWDIASG 118
Query: 173 QLVHSYKG 180
+V S+ G
Sbjct: 119 MIVFSFNG 126
>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional.
Length = 429
Score = 30.2 bits (68), Expect = 2.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 135 TLTRHTEPVYSVAFSPDGKFLASGSFDK-----CVHIWSARTGQLVHSYKGTGG 183
+ R ++P+ S A+SPDG LA SF+ VH + ++V S++G G
Sbjct: 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG 251
>gnl|CDD|232795 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
RdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 184
Score = 29.3 bits (66), Expect = 4.1
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 547 VCKLHSDKPVKSFEGHTTGQLVHSYKGTGG-----IFEV 580
+ + FEG G++ +GT G IF
Sbjct: 113 IGYCDPNGEPLVFEGIVKGKITREPRGTYGFGYDPIFIP 151
>gnl|CDD|227689 COG5402, COG5402, Uncharacterized conserved protein [Function
unknown].
Length = 194
Score = 29.4 bits (66), Expect = 4.5
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 291 NGSFLATGSYD-----GYARIWTSDGSLKSTLGQHKGPIFALKWNKRGNYIL 337
+ LA G + ++DGS T+ P L GN+IL
Sbjct: 113 DLHVLAPGEGRPSALNSRTVLRSADGSWVITVSPDAQPGNWLPVRGEGNFIL 164
>gnl|CDD|219410 pfam07433, DUF1513, Protein of unknown function (DUF1513). This
family consists of several bacterial proteins of around
360 residues in length. The function of this family is
unknown.
Length = 304
Score = 29.1 bits (66), Expect = 6.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 145 SVAFSPDGKFLASGS-FDKCVHIWSARTGQLV 175
SVA DG+ +A S V IW A TG+L+
Sbjct: 221 SVAADRDGRLVAVTSPRGGRVAIWDAATGRLL 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.407
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,390,786
Number of extensions: 2717485
Number of successful extensions: 2043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1916
Number of HSP's successfully gapped: 83
Length of query: 602
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 500
Effective length of database: 6,413,494
Effective search space: 3206747000
Effective search space used: 3206747000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.4 bits)