BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12699
(1269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short Rna
Fragment
Length = 677
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/557 (52%), Positives = 363/557 (65%), Gaps = 123/557 (22%)
Query: 712 LQHQAYISFRRYCLETQSLPVDLHVVLSDIIQGAGHVDDMFPYYLRHAKQMFPHLDCMDD 771
L HQA+ISFR Y +++ SL VD+H+VL+DI GA H DD+FP++LRHAKQ+FP LDC DD
Sbjct: 74 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDD 133
Query: 772 LKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAG 831
L+KISDLR P WYP+AR++ R+IIFH+G
Sbjct: 134 LRKISDLRIPPNWYPDARAMQRKIIFHSG------------------------------- 162
Query: 832 PTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEK 891
PTNSGKTYHA++++ SA+SGVYCGPLK+LA E+F+KSN G PCDL+TGEE+ +Q K
Sbjct: 163 PTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGK 222
Query: 892 PANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD 951
A+HV+CTVEM SV PYEVAVIDEIQM+RD RGWAWTRALLGL A+E+H+CGE A+D
Sbjct: 223 QASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282
Query: 952 LVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIES 1011
LV +M TT E+VEV YKRLT + + D A+ SLDN++PGDCIVCFSKND+Y+VSR IE
Sbjct: 283 LVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEI 342
Query: 1012 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIY 1071
RG E AVIYGSLPP TKLAQA KFNDP++PCK++VATDAIGMGLN
Sbjct: 343 RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLN--------------- 387
Query: 1072 GSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREI 1131
LSIRR+IFYSLIKPS+NEKGERE+
Sbjct: 388 ------------------------------------LSIRRIIFYSLIKPSINEKGEREL 411
Query: 1132 DLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNT 1191
+ I+ S ALQIAGRAGRF ++
Sbjct: 412 EPITTSQALQIAGRAGRF----------------------------------------SS 431
Query: 1192 HFEKGFVTTFKPDDLPILKNLLAQSPEPITKAGLHPTADQIELYAYHLPNSTLSNLMDIF 1251
F++G VTT +DL +LK +L + +PI AGLHPTA+QIE++AYHLP++TLSNL+DIF
Sbjct: 432 RFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIF 491
Query: 1252 VSLSTVDDSLYFMCNIE 1268
V S VD YF+CN++
Sbjct: 492 VDFSQVDGQ-YFVCNMD 507
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 3/134 (2%)
Query: 364 TVTNEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVE 423
T EVAVIDEIQM+RD RGWAWTRALLGL A+E+H+CGE A+DLV +M TT E+VE
Sbjct: 237 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE 296
Query: 424 VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYT-HQGVYTLGAEWSLGIGT--S 480
V YKRLT + + D A+ SLDN++PGDCIVCFSKND+Y+ + + G E ++ G+
Sbjct: 297 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP 356
Query: 481 SKVLVRNKKSNTTN 494
L + KK N N
Sbjct: 357 GTKLAQAKKFNDPN 370
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 22/93 (23%)
Query: 478 GTSSKVLVRNKKSNTTNLFVPVHVKPNTDPTDANVGQELTVPVHVKPNTDPTDANVGQEL 537
GT+S K T+LFVP+ VKP D +VG ELT P
Sbjct: 1 GTASSSASGGSKIPNTSLFVPLTVKPQGPSADGDVGAELTRP------------------ 42
Query: 538 TGGSIDKSETVKILNKFYQRQEIKIAAMDHGLD 570
+DK+E K+L+KFY+R+EI+ D+GLD
Sbjct: 43 ----LDKNEVKKVLDKFYKRKEIQKLGADYGLD 71
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 288/557 (51%), Positives = 355/557 (63%), Gaps = 123/557 (22%)
Query: 712 LQHQAYISFRRYCLETQSLPVDLHVVLSDIIQGAGHVDDMFPYYLRHAKQMFPHLDCMDD 771
L HQA+ISFR Y ++ SL VD+H+VL+DI GA H DD+FP++LRHAKQ+FP LDC DD
Sbjct: 74 LFHQAFISFRNYIXQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDD 133
Query: 772 LKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAG 831
L+KISDLR P WYP+AR+ R+IIFH+G
Sbjct: 134 LRKISDLRIPPNWYPDARAXQRKIIFHSG------------------------------- 162
Query: 832 PTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEK 891
PTNSGKTYHA++++ SA+SGVYCGPLK+LA E+F+KSN G PCDL+TGEE+ +Q K
Sbjct: 163 PTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGK 222
Query: 892 PANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD 951
A+HV+CTVE SV PYEVAVIDEIQ +RD RGWAWTRALLGL A+E+H+CGE A+D
Sbjct: 223 QASHVSCTVEXCSVTTPYEVAVIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282
Query: 952 LVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIES 1011
LV + TT E+VEV YKRLT + + D A+ SLDN++PGDCIVCFSKND+Y+VSR IE
Sbjct: 283 LVXELXYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEI 342
Query: 1012 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIY 1071
RG E AVIYGSLPP TKLAQA KFNDP++PCK++VATDAIG GLN
Sbjct: 343 RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGXGLN--------------- 387
Query: 1072 GSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREI 1131
LSIRR+IFYSLIKPS+NEKGERE+
Sbjct: 388 ------------------------------------LSIRRIIFYSLIKPSINEKGEREL 411
Query: 1132 DLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNT 1191
+ I+ S ALQIAGRAGRF ++
Sbjct: 412 EPITTSQALQIAGRAGRF----------------------------------------SS 431
Query: 1192 HFEKGFVTTFKPDDLPILKNLLAQSPEPITKAGLHPTADQIELYAYHLPNSTLSNLMDIF 1251
F++G VTT +DL +LK +L + +PI AGLHPTA+QIE +AYHLP++TLSNL+DIF
Sbjct: 432 RFKEGEVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPDATLSNLIDIF 491
Query: 1252 VSLSTVDDSLYFMCNIE 1268
V S VD YF+CN +
Sbjct: 492 VDFSQVDGQ-YFVCNXD 507
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 92/134 (68%), Gaps = 3/134 (2%)
Query: 364 TVTNEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVE 423
T EVAVIDEIQ +RD RGWAWTRALLGL A+E+H+CGE A+DLV + TT E+VE
Sbjct: 237 TTPYEVAVIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEVE 296
Query: 424 VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYT-HQGVYTLGAEWSLGIGT--S 480
V YKRLT + + D A+ SLDN++PGDCIVCFSKND+Y+ + + G E ++ G+
Sbjct: 297 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP 356
Query: 481 SKVLVRNKKSNTTN 494
L + KK N N
Sbjct: 357 GTKLAQAKKFNDPN 370
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 22/93 (23%)
Query: 478 GTSSKVLVRNKKSNTTNLFVPVHVKPNTDPTDANVGQELTVPVHVKPNTDPTDANVGQEL 537
GT+S K T+LFVP+ VKP D +VG ELT P
Sbjct: 1 GTASSSASGGSKIPNTSLFVPLTVKPQGPSADGDVGAELTRP------------------ 42
Query: 538 TGGSIDKSETVKILNKFYQRQEIKIAAMDHGLD 570
+DK+E K+L+KFY+R+EI+ D+GLD
Sbjct: 43 ----LDKNEVKKVLDKFYKRKEIQKLGADYGLD 71
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 1055 LNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVI 1114
L R + RG +AV +G L P K F+ KV+ AT+ MGLNL R VI
Sbjct: 392 LKTRSLLERG--IAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPTRTVI 447
Query: 1115 FYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
F S+ K N G RE ++ Q+AGRAGR
Sbjct: 448 FSSIRKHDGN--GLRE---LTPGEFTQMAGRAGR 476
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 18/75 (24%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHF 1153
KV+VAT + G+NL RRVI SL + K I VS Q+AGRAGR
Sbjct: 324 KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSK------RIKVSEYKQMAGRAGR----- 372
Query: 1154 EKLAGSHPALNEKGE 1168
P ++E+GE
Sbjct: 373 -------PGMDERGE 380
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A Dna
Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A Dna
Substrate
Length = 591
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I CFS+ D V+ +++ G + +L P K K++ N +V+VAT A GM
Sbjct: 272 IYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS--ANEIQVVVATVAFGM 329
Query: 1054 GLN 1056
G++
Sbjct: 330 GID 332
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 1059 GIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYS 1117
+++ G + +L P K K++ N +V+VAT A GMG++ +R VI +S
Sbjct: 286 SLQNLGIHAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFGMGIDKPDVRFVIHHS 343
Query: 1118 LIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
+ K S+ Q +GRAGR
Sbjct: 344 MSK--------------SMENYYQESGRAGR 360
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHF 1153
KV+ AT+ +GLN+ + V+F S+ K ++ +S +Q++GRAGR
Sbjct: 532 KVLFATETFSIGLNMPAKTVVFTSVRKWD-----GQQFRWVSGGEYIQMSGRAGRRGLDD 586
Query: 1154 EKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNTHFEKGF 1197
+ ++EK E ++ A + G+A R ++ F G+
Sbjct: 587 RGIVIM--MIDEKMEPQV------AKGMVKGQADRLDSAFHLGY 622
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHF 1153
KV+ AT+ +GLN+ + V+F S+ K ++ +S +Q++GRAGR
Sbjct: 434 KVLFATETFSIGLNMPAKTVVFTSVRKWD-----GQQFRWVSGGEYIQMSGRAGRRGLDD 488
Query: 1154 EKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNTHFEKGF 1197
+ ++EK E ++ A + G+A R ++ F G+
Sbjct: 489 RGIVIM--MIDEKMEPQV------AKGMVKGQADRLDSAFHLGY 524
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1039 DNPCKVMVATDAIGMGLNFRGIESR--GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096
D K+ + T + MG R I + TEV +YG L + SKF + + ++
Sbjct: 339 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 398
Query: 1097 VATDAIGMGLNL-SIRRVIFYS 1117
++ A G G+NL S RVI +
Sbjct: 399 LSVKAGGFGINLTSANRVIHFD 420
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I C S+ V + ++S+G A + L + KF D +++VAT A GM
Sbjct: 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD--LQIVVATVAFGM 298
Query: 1054 GLN 1056
G+N
Sbjct: 299 GIN 301
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSL 1118
++S+G A + L + KF D +++VAT A GMG+N ++R V+ + +
Sbjct: 256 LQSKGISAAAYHAGLENNVRADVQEKFQRDD--LQIVVATVAFGMGINKPNVRFVVHFDI 313
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162
+ ++ + Q GRAGR E + PA
Sbjct: 314 PR--------------NIESYYQETGRAGRDGLPAEAMLFYDPA 343
>pdb|1YKS|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Length = 440
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 1096 MVATDAIGMGLNLSIRRVI-FYSLIKPSLNEKGEREIDL-----ISVSAALQIAGRAGR 1148
++ATD MG NL + RV+ + KP L ++G R++ + IS S+A Q GR GR
Sbjct: 227 ILATDIAEMGANLCVERVLDCRTAFKPVLVDEG-RKVAIKGPLRISASSAAQRRGRIGR 284
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 1039 DNPCKVMVATDAIGMGLNFRGIESR--GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096
D K+ + T + MG R I + TEV +YG L + SKF + + ++
Sbjct: 110 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169
Query: 1097 VATDAIGMGLNL-SIRRVIFY 1116
++ A G G+NL S RVI +
Sbjct: 170 LSVKAGGFGINLTSANRVIHF 190
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1093 CKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
KV+VAT + G+NL R VI + + N+K D I + Q++GRAGR
Sbjct: 339 IKVIVATPTLAAGVNLPARTVIIGDIYR--FNKKIAGYYDEIPIMEYKQMSGRAGR 392
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
Length = 500
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1039 DNPCKVMVATDAIGMGLNFRGIESR--GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096
D K+ + T + G R I + TEV +YG L + SKF + + ++
Sbjct: 339 DEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIV 398
Query: 1097 VATDAIGMGLNL-SIRRVIFYS 1117
++ A G G+NL S RVI +
Sbjct: 399 LSVKAGGFGINLTSANRVIHFD 420
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I C S+ V + ++S+G A + L + KF D +++VAT A G
Sbjct: 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD--LQIVVATVAFGX 298
Query: 1054 GLN 1056
G+N
Sbjct: 299 GIN 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,061,741
Number of Sequences: 62578
Number of extensions: 1437743
Number of successful extensions: 3317
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3279
Number of HSP's gapped (non-prelim): 45
length of query: 1269
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1159
effective length of database: 8,089,757
effective search space: 9376028363
effective search space used: 9376028363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)