Query psy12699
Match_columns 1269
No_of_seqs 974 out of 5902
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:24:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953|consensus 100.0 1.4E-72 3.1E-77 630.3 34.1 408 734-1269 132-540 (700)
2 KOG0331|consensus 100.0 1.8E-39 4E-44 376.5 19.8 280 821-1167 125-453 (519)
3 KOG0330|consensus 100.0 5.5E-39 1.2E-43 347.5 16.3 280 822-1155 96-400 (476)
4 KOG0345|consensus 100.0 1E-36 2.2E-41 337.1 14.9 279 821-1164 40-366 (567)
5 COG0513 SrmB Superfamily II DN 100.0 5.5E-36 1.2E-40 364.4 18.7 275 821-1162 63-380 (513)
6 KOG0340|consensus 100.0 3.7E-35 8.1E-40 314.3 18.8 267 821-1154 41-353 (442)
7 KOG0333|consensus 100.0 6.2E-35 1.3E-39 326.0 17.7 294 789-1164 278-626 (673)
8 KOG0338|consensus 100.0 3.3E-35 7.1E-40 326.7 13.8 290 823-1164 217-535 (691)
9 PTZ00110 helicase; Provisional 100.0 2.6E-34 5.6E-39 353.2 20.3 278 821-1165 164-487 (545)
10 KOG0348|consensus 100.0 2E-34 4.3E-39 322.3 17.3 325 822-1167 172-559 (708)
11 KOG0328|consensus 100.0 2.4E-34 5.2E-39 298.5 16.6 272 820-1158 60-369 (400)
12 PRK11776 ATP-dependent RNA hel 100.0 5.9E-34 1.3E-38 346.8 22.2 276 821-1163 38-350 (460)
13 PRK04837 ATP-dependent RNA hel 100.0 5.4E-34 1.2E-38 343.4 20.1 275 821-1162 42-362 (423)
14 KOG0342|consensus 100.0 5.6E-34 1.2E-38 318.1 16.8 291 820-1162 115-437 (543)
15 PLN00206 DEAD-box ATP-dependen 100.0 3.7E-33 8E-38 342.2 22.9 286 821-1162 155-475 (518)
16 PRK10590 ATP-dependent RNA hel 100.0 4.7E-33 1E-37 337.4 23.5 275 821-1162 35-352 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 4.7E-33 1E-37 343.1 21.3 275 821-1162 43-364 (572)
18 PRK11634 ATP-dependent RNA hel 100.0 5.6E-33 1.2E-37 343.9 21.9 274 822-1162 41-352 (629)
19 KOG0335|consensus 100.0 4E-33 8.6E-38 318.0 17.3 242 848-1156 152-438 (482)
20 KOG0343|consensus 100.0 4.2E-33 9.1E-38 312.4 16.4 294 821-1164 103-424 (758)
21 KOG0326|consensus 100.0 3.6E-33 7.7E-38 294.2 13.2 295 821-1221 119-449 (459)
22 KOG0336|consensus 100.0 3.2E-32 7E-37 294.9 19.7 281 821-1155 254-565 (629)
23 PRK11192 ATP-dependent RNA hel 100.0 5.7E-32 1.2E-36 327.3 23.8 275 821-1162 35-352 (434)
24 KOG0953|consensus 100.0 1.6E-33 3.4E-38 317.1 7.5 148 366-513 275-426 (700)
25 KOG1444|consensus 100.0 3.8E-31 8.2E-36 285.8 24.0 296 62-360 11-308 (314)
26 PRK01297 ATP-dependent RNA hel 100.0 2.9E-31 6.4E-36 323.9 24.6 275 821-1162 121-442 (475)
27 KOG0339|consensus 100.0 1.2E-31 2.6E-36 297.7 18.4 280 821-1167 257-580 (731)
28 COG1204 Superfamily II helicas 100.0 1.2E-31 2.6E-36 333.9 20.7 318 811-1150 34-394 (766)
29 PLN03137 ATP-dependent DNA hel 100.0 3.7E-31 8.1E-36 329.1 24.5 274 820-1161 471-786 (1195)
30 TIGR00614 recQ_fam ATP-depende 100.0 8.4E-31 1.8E-35 318.6 26.1 273 821-1162 23-333 (470)
31 PRK02362 ski2-like helicase; P 100.0 3.3E-31 7.1E-36 338.7 22.6 314 821-1160 36-395 (737)
32 KOG1441|consensus 100.0 1.1E-31 2.3E-36 298.7 15.2 297 61-359 15-314 (316)
33 PRK10689 transcription-repair 100.0 9.7E-31 2.1E-35 339.3 26.1 331 754-1186 588-949 (1147)
34 PTZ00424 helicase 45; Provisio 100.0 5.5E-31 1.2E-35 316.4 21.4 275 821-1162 62-374 (401)
35 TIGR03817 DECH_helic helicase/ 100.0 5.7E-31 1.2E-35 332.4 22.5 280 820-1159 47-383 (742)
36 TIGR00580 mfd transcription-re 100.0 5.9E-31 1.3E-35 334.4 22.2 329 755-1186 440-800 (926)
37 PTZ00343 triose or hexose phos 100.0 1.2E-29 2.6E-34 295.9 30.9 292 60-354 46-350 (350)
38 KOG0332|consensus 100.0 1.6E-30 3.4E-35 280.3 20.7 278 824-1162 129-443 (477)
39 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-29 2.3E-34 319.9 29.1 285 823-1161 16-335 (819)
40 PRK01172 ski2-like helicase; P 100.0 6E-30 1.3E-34 325.0 27.2 296 821-1152 34-366 (674)
41 TIGR00817 tpt Tpt phosphate/ph 100.0 1.6E-29 3.5E-34 291.1 25.8 291 64-358 3-299 (302)
42 COG1197 Mfd Transcription-repa 100.0 3.5E-30 7.6E-35 318.5 20.4 330 755-1187 583-944 (1139)
43 KOG0922|consensus 100.0 8.4E-30 1.8E-34 296.3 21.4 281 792-1151 65-380 (674)
44 PRK11057 ATP-dependent DNA hel 100.0 1.5E-29 3.2E-34 315.5 25.0 274 821-1162 37-343 (607)
45 KOG0341|consensus 100.0 3.8E-31 8.1E-36 284.8 9.1 274 821-1162 204-528 (610)
46 PRK11664 ATP-dependent RNA hel 100.0 4.1E-29 8.9E-34 315.6 28.6 286 822-1161 18-338 (812)
47 KOG0350|consensus 100.0 1.8E-30 3.9E-35 289.2 10.4 295 824-1159 183-537 (620)
48 TIGR01389 recQ ATP-dependent D 100.0 9.3E-29 2E-33 309.5 26.2 274 821-1162 25-331 (591)
49 PHA02653 RNA helicase NPH-II; 100.0 2E-28 4.2E-33 301.5 26.4 300 791-1163 177-515 (675)
50 KOG0346|consensus 100.0 3.5E-29 7.6E-34 274.9 15.9 276 821-1164 53-412 (569)
51 PRK10917 ATP-dependent DNA hel 100.0 2.1E-28 4.5E-33 308.3 23.7 345 757-1185 252-613 (681)
52 PRK00254 ski2-like helicase; P 100.0 1.2E-28 2.5E-33 314.5 21.1 312 821-1160 36-386 (720)
53 PRK13767 ATP-dependent helicas 100.0 4.2E-28 9.1E-33 312.5 25.4 269 821-1150 44-385 (876)
54 KOG0952|consensus 100.0 3.1E-28 6.6E-33 291.9 21.8 292 822-1148 124-475 (1230)
55 KOG0347|consensus 100.0 4.2E-29 9.1E-34 280.6 11.7 293 789-1163 214-571 (731)
56 KOG0334|consensus 100.0 8.7E-29 1.9E-33 300.4 15.1 280 821-1167 399-725 (997)
57 KOG0344|consensus 100.0 1.5E-28 3.2E-33 281.6 15.4 286 822-1162 171-495 (593)
58 KOG0923|consensus 100.0 7.4E-28 1.6E-32 275.4 20.0 284 792-1152 279-597 (902)
59 COG0514 RecQ Superfamily II DN 100.0 1E-27 2.2E-32 284.2 21.8 274 820-1163 28-338 (590)
60 TIGR00643 recG ATP-dependent D 100.0 5.6E-28 1.2E-32 302.6 19.9 317 759-1159 228-563 (630)
61 PRK11131 ATP-dependent RNA hel 100.0 2.8E-27 6.1E-32 302.1 24.1 288 792-1161 88-410 (1294)
62 PRK09751 putative ATP-dependen 100.0 1.1E-27 2.4E-32 311.4 20.4 266 848-1149 37-371 (1490)
63 COG1202 Superfamily II helicas 100.0 5.4E-28 1.2E-32 272.7 14.3 282 815-1162 223-553 (830)
64 KOG1443|consensus 99.9 8E-27 1.7E-31 246.9 21.4 290 60-352 13-315 (349)
65 COG1200 RecG RecG-like helicas 99.9 2.4E-27 5.2E-32 279.1 18.9 344 756-1188 252-618 (677)
66 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.2E-26 2.7E-31 297.6 24.7 288 792-1161 81-403 (1283)
67 KOG4284|consensus 99.9 1.2E-27 2.5E-32 272.4 13.3 294 822-1162 60-379 (980)
68 KOG0924|consensus 99.9 7.6E-27 1.6E-31 267.0 18.5 305 756-1151 348-687 (1042)
69 COG1201 Lhr Lhr-like helicases 99.9 1.2E-26 2.6E-31 284.7 21.2 263 821-1149 34-348 (814)
70 KOG1442|consensus 99.9 1.4E-27 3.1E-32 247.6 9.3 299 62-362 27-337 (347)
71 KOG0951|consensus 99.9 1E-26 2.2E-31 281.2 17.5 310 821-1152 322-690 (1674)
72 KOG0947|consensus 99.9 2.7E-26 5.8E-31 271.8 19.8 368 821-1229 309-783 (1248)
73 KOG0327|consensus 99.9 1.8E-26 3.9E-31 252.5 16.3 269 821-1157 60-365 (397)
74 COG1643 HrpA HrpA-like helicas 99.9 1.5E-25 3.2E-30 277.4 25.1 282 792-1150 64-376 (845)
75 COG4581 Superfamily II RNA hel 99.9 2.4E-26 5.2E-31 285.1 17.9 320 820-1164 130-539 (1041)
76 KOG0948|consensus 99.9 1.7E-26 3.8E-31 267.0 14.7 312 819-1161 139-538 (1041)
77 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.3E-25 2.8E-30 277.2 20.4 262 821-1155 27-383 (844)
78 TIGR01587 cas3_core CRISPR-ass 99.9 1.4E-25 2.9E-30 265.3 19.9 259 826-1152 1-322 (358)
79 KOG1444|consensus 99.9 1.1E-25 2.4E-30 243.5 14.4 155 590-744 11-170 (314)
80 PF08449 UAA: UAA transporter 99.9 3.8E-24 8.2E-29 245.9 26.8 276 77-357 14-302 (303)
81 KOG0337|consensus 99.9 1.2E-25 2.6E-30 246.3 11.3 277 821-1164 55-370 (529)
82 KOG0926|consensus 99.9 1E-24 2.2E-29 253.7 17.0 328 793-1152 271-695 (1172)
83 COG5070 VRG4 Nucleotide-sugar 99.9 1E-24 2.2E-29 219.5 12.9 287 65-358 8-302 (309)
84 PLN00411 nodulin MtN21 family 99.9 9.7E-23 2.1E-27 236.4 24.7 289 61-357 11-333 (358)
85 PHA02558 uvsW UvsW helicase; P 99.9 4E-23 8.6E-28 252.7 20.8 281 821-1153 126-443 (501)
86 KOG0352|consensus 99.9 8E-23 1.7E-27 223.6 15.7 270 821-1159 33-359 (641)
87 COG1111 MPH1 ERCC4-like helica 99.9 3.9E-22 8.4E-27 225.8 19.4 96 825-920 30-143 (542)
88 KOG0920|consensus 99.9 1.4E-21 3.1E-26 240.5 23.8 287 792-1150 187-533 (924)
89 KOG0351|consensus 99.9 2.8E-22 6.1E-27 251.4 15.9 273 820-1162 275-592 (941)
90 TIGR03158 cas3_cyano CRISPR-as 99.9 2E-21 4.3E-26 227.6 21.4 254 821-1147 9-357 (357)
91 PRK09401 reverse gyrase; Revie 99.9 6.2E-22 1.3E-26 258.1 17.0 261 820-1148 91-430 (1176)
92 PRK09200 preprotein translocas 99.9 3.6E-21 7.9E-26 238.2 22.8 87 1060-1164 448-543 (790)
93 PRK14701 reverse gyrase; Provi 99.9 1.4E-21 3.1E-26 259.5 19.8 273 821-1155 91-449 (1638)
94 PRK12898 secA preprotein trans 99.9 1.3E-20 2.9E-25 228.4 22.2 85 1060-1162 493-586 (656)
95 COG1205 Distinct helicase fami 99.9 3.7E-21 8.1E-26 243.8 18.0 299 819-1155 80-415 (851)
96 KOG0925|consensus 99.8 7.8E-21 1.7E-25 211.3 15.0 280 792-1155 61-380 (699)
97 TIGR00963 secA preprotein tran 99.8 5.9E-20 1.3E-24 223.6 22.1 290 827-1162 72-517 (745)
98 KOG1581|consensus 99.8 2.8E-19 6E-24 190.7 24.4 261 91-356 48-317 (327)
99 TIGR03714 secA2 accessory Sec 99.8 7.4E-20 1.6E-24 224.3 22.5 88 1060-1166 444-541 (762)
100 TIGR00603 rad25 DNA repair hel 99.8 8.2E-20 1.8E-24 224.1 20.1 275 825-1154 274-592 (732)
101 PRK13766 Hef nuclease; Provisi 99.8 5.8E-20 1.3E-24 238.4 19.3 68 1071-1155 404-472 (773)
102 PRK11453 O-acetylserine/cystei 99.8 1.1E-18 2.3E-23 200.7 26.7 278 62-355 7-290 (299)
103 PF06027 DUF914: Eukaryotic pr 99.8 1.2E-18 2.6E-23 197.4 25.3 274 77-358 27-311 (334)
104 TIGR00595 priA primosomal prot 99.8 1E-19 2.2E-24 220.8 17.5 323 829-1162 2-382 (505)
105 KOG1441|consensus 99.8 7.2E-21 1.6E-25 212.4 6.6 154 591-744 17-172 (316)
106 TIGR01054 rgy reverse gyrase. 99.8 6.9E-20 1.5E-24 239.5 16.5 244 820-1122 89-411 (1171)
107 PRK05580 primosome assembly pr 99.8 2.3E-19 5E-24 225.5 19.5 317 824-1156 162-543 (679)
108 PRK11272 putative DMT superfam 99.8 2.9E-18 6.4E-23 196.3 26.8 272 64-355 13-288 (292)
109 KOG1580|consensus 99.8 1E-19 2.2E-24 184.9 12.5 257 91-352 50-313 (337)
110 PRK11689 aromatic amino acid e 99.8 2.3E-18 4.9E-23 197.4 25.3 268 62-354 7-289 (295)
111 PRK10532 threonine and homoser 99.8 5.2E-18 1.1E-22 194.3 27.4 271 62-356 11-285 (293)
112 KOG0353|consensus 99.8 2.5E-19 5.4E-24 193.0 15.3 274 817-1161 102-466 (695)
113 TIGR00950 2A78 Carboxylate/Ami 99.8 1.6E-18 3.5E-23 195.6 21.9 251 80-347 6-259 (260)
114 KOG0950|consensus 99.8 3.3E-19 7.1E-24 214.7 16.3 321 817-1163 233-612 (1008)
115 KOG0329|consensus 99.8 2E-20 4.4E-25 192.4 4.8 254 822-1163 77-356 (387)
116 PRK15430 putative chlorampheni 99.8 6.4E-18 1.4E-22 193.8 23.6 276 63-354 8-287 (296)
117 PRK09694 helicase Cas3; Provis 99.8 1.6E-18 3.4E-23 219.0 19.4 70 1065-1152 588-665 (878)
118 KOG0354|consensus 99.8 2E-18 4.4E-23 207.3 19.1 71 1072-1159 456-527 (746)
119 KOG0349|consensus 99.8 2E-18 4.4E-23 189.2 15.8 296 848-1217 286-663 (725)
120 KOG1582|consensus 99.8 7.1E-18 1.5E-22 175.3 16.1 291 60-355 40-335 (367)
121 PRK04914 ATP-dependent helicas 99.8 2E-17 4.4E-22 210.2 22.8 84 1062-1159 516-600 (956)
122 COG5070 VRG4 Nucleotide-sugar 99.7 5.6E-18 1.2E-22 171.2 10.1 149 593-744 8-168 (309)
123 COG1061 SSL2 DNA or RNA helica 99.7 8.6E-17 1.9E-21 193.2 21.3 278 824-1154 55-382 (442)
124 KOG1442|consensus 99.7 1.3E-18 2.9E-23 181.3 1.4 154 591-744 28-198 (347)
125 KOG0949|consensus 99.7 6.6E-17 1.4E-21 193.1 14.3 136 822-957 524-681 (1330)
126 PRK12906 secA preprotein trans 99.7 1.8E-16 4E-21 195.1 18.6 102 1043-1162 442-553 (796)
127 COG4098 comFA Superfamily II D 99.7 1.2E-15 2.5E-20 164.6 19.9 260 821-1151 113-403 (441)
128 TIGR03340 phn_DUF6 phosphonate 99.7 1.3E-15 2.8E-20 173.6 20.9 267 68-349 6-280 (281)
129 PRK13104 secA preprotein trans 99.7 1.4E-15 3E-20 188.1 20.8 99 826-924 97-219 (896)
130 COG0697 RhaT Permeases of the 99.7 2.7E-14 5.9E-19 163.7 27.9 274 65-353 9-288 (292)
131 PRK12904 preprotein translocas 99.6 5.2E-15 1.1E-19 183.1 22.0 98 827-924 97-218 (830)
132 KOG3912|consensus 99.6 4.2E-15 9.2E-20 155.7 17.3 283 67-352 7-334 (372)
133 KOG1583|consensus 99.6 1.1E-15 2.3E-20 160.4 11.7 283 67-357 9-319 (330)
134 PRK11448 hsdR type I restricti 99.6 4.6E-15 9.9E-20 193.2 20.1 66 1067-1150 734-801 (1123)
135 PTZ00343 triose or hexose phos 99.6 3.2E-15 6.9E-20 174.8 14.7 153 590-744 48-207 (350)
136 KOG4510|consensus 99.6 2E-16 4.3E-21 164.6 2.8 219 129-357 98-330 (346)
137 TIGR00688 rarD rarD protein. T 99.6 5.8E-14 1.3E-18 157.9 21.9 243 63-326 6-255 (256)
138 TIGR00817 tpt Tpt phosphate/ph 99.6 1.2E-14 2.5E-19 167.8 13.5 144 593-738 4-148 (302)
139 KOG2765|consensus 99.6 1.2E-14 2.7E-19 159.3 12.5 227 128-357 159-395 (416)
140 PF03151 TPT: Triose-phosphate 99.5 3.6E-14 7.9E-19 146.4 13.0 143 209-352 1-153 (153)
141 KOG2234|consensus 99.5 5.5E-13 1.2E-17 147.6 22.9 286 65-357 17-327 (345)
142 COG1203 CRISPR-associated heli 99.5 1.4E-13 3.1E-18 175.1 20.9 73 1067-1155 467-543 (733)
143 TIGR00776 RhaT RhaT L-rhamnose 99.5 7.8E-13 1.7E-17 150.8 24.3 266 62-353 4-289 (290)
144 PRK13107 preprotein translocas 99.5 3.3E-13 7.3E-18 166.6 22.0 96 826-921 97-215 (908)
145 PF04142 Nuc_sug_transp: Nucle 99.5 2E-13 4.3E-18 150.3 16.7 212 125-343 14-244 (244)
146 COG5006 rhtA Threonine/homoser 99.5 6.2E-12 1.3E-16 131.2 20.6 254 81-357 30-287 (292)
147 PF00271 Helicase_C: Helicase 99.4 1.1E-13 2.4E-18 125.1 6.6 75 1060-1150 3-78 (78)
148 PRK12899 secA preprotein trans 99.4 5E-12 1.1E-16 156.5 21.5 102 820-921 103-228 (970)
149 COG2962 RarD Predicted permeas 99.4 1.3E-11 2.7E-16 133.1 20.6 278 63-357 7-288 (293)
150 COG1198 PriA Primosomal protei 99.4 1.5E-12 3.2E-17 160.4 14.7 318 825-1155 218-596 (730)
151 cd00268 DEADc DEAD-box helicas 99.4 8.6E-13 1.9E-17 143.0 11.0 138 821-958 33-193 (203)
152 COG1110 Reverse gyrase [DNA re 99.4 2.6E-12 5.7E-17 156.4 14.5 253 800-1122 82-419 (1187)
153 PLN03142 Probable chromatin-re 99.4 7.8E-12 1.7E-16 160.2 18.0 80 1062-1155 509-590 (1033)
154 PF00270 DEAD: DEAD/DEAH box h 99.4 7.8E-13 1.7E-17 138.7 7.5 135 821-955 11-168 (169)
155 KOG0951|consensus 99.3 1.6E-11 3.6E-16 151.0 14.7 318 824-1181 1159-1514(1674)
156 PRK12900 secA preprotein trans 99.2 2E-10 4.3E-15 142.9 18.2 105 1042-1164 599-713 (1025)
157 KOG2766|consensus 99.2 1.4E-11 3E-16 128.0 6.2 264 73-352 28-299 (336)
158 TIGR00348 hsdR type I site-spe 99.2 3.1E-10 6.7E-15 143.4 17.9 97 825-921 264-378 (667)
159 smart00490 HELICc helicase sup 99.2 4.4E-11 9.5E-16 108.7 7.0 73 1062-1150 9-82 (82)
160 cd00079 HELICc Helicase superf 99.1 1.4E-10 3E-15 115.9 10.1 73 1067-1155 55-128 (131)
161 PRK12326 preprotein translocas 99.1 1.4E-09 3.1E-14 131.8 20.1 95 827-921 94-211 (764)
162 KOG1443|consensus 99.1 1E-10 2.2E-15 125.5 8.5 147 596-744 21-177 (349)
163 COG4096 HsdR Type I site-speci 99.1 3.7E-10 7.9E-15 136.4 14.0 97 818-920 178-297 (875)
164 TIGR00631 uvrb excinuclease AB 99.1 1.8E-10 4E-15 143.6 11.4 88 1063-1162 465-553 (655)
165 COG0556 UvrB Helicase subunit 99.1 4E-09 8.7E-14 121.0 20.8 114 1060-1186 466-580 (663)
166 KOG0921|consensus 99.1 2.3E-10 5E-15 136.7 10.2 83 1066-1151 676-764 (1282)
167 PF08449 UAA: UAA transporter 99.1 8.1E-10 1.8E-14 127.3 12.8 136 595-732 5-141 (303)
168 PRK05298 excinuclease ABC subu 99.1 4.7E-10 1E-14 141.2 11.7 87 1062-1160 468-555 (652)
169 PRK13103 secA preprotein trans 99.0 4.5E-09 9.7E-14 130.7 17.6 100 825-924 96-219 (913)
170 TIGR00803 nst UDP-galactose tr 98.9 1.4E-09 3E-14 119.6 7.2 188 152-350 2-222 (222)
171 KOG4150|consensus 98.9 9.2E-10 2E-14 125.5 5.6 73 1067-1155 560-633 (1034)
172 KOG4314|consensus 98.9 2.4E-09 5.2E-14 107.2 7.6 220 128-355 53-279 (290)
173 cd00046 DEXDc DEAD-like helica 98.9 3.3E-09 7.1E-14 106.7 8.7 100 826-925 2-120 (144)
174 KOG0385|consensus 98.9 2.2E-08 4.7E-13 119.1 16.4 81 1062-1156 509-591 (971)
175 KOG1123|consensus 98.9 2.8E-08 6E-13 112.6 14.5 277 825-1152 321-637 (776)
176 KOG0390|consensus 98.8 7.6E-08 1.7E-12 118.5 18.8 89 1062-1164 617-712 (776)
177 TIGR01407 dinG_rel DnaQ family 98.8 6.3E-08 1.4E-12 126.5 18.3 47 820-866 260-310 (850)
178 smart00487 DEXDc DEAD-like hel 98.8 2E-08 4.3E-13 107.5 9.8 138 822-959 21-180 (201)
179 COG2510 Predicted membrane pro 98.8 2.8E-08 6E-13 93.6 8.5 135 209-351 4-138 (140)
180 KOG0387|consensus 98.7 1.4E-07 3.1E-12 113.0 16.0 79 1063-1155 570-649 (923)
181 PRK12903 secA preprotein trans 98.7 3.3E-07 7.1E-12 113.2 18.2 98 827-924 94-215 (925)
182 CHL00122 secA preprotein trans 98.7 7.7E-07 1.7E-11 110.8 20.5 101 824-924 89-213 (870)
183 PRK14873 primosome assembly pr 98.6 6.1E-07 1.3E-11 112.1 16.5 88 833-920 169-269 (665)
184 PF04851 ResIII: Type III rest 98.6 9.1E-08 2E-12 101.5 7.1 99 824-922 25-160 (184)
185 COG4889 Predicted helicase [Ge 98.6 5.2E-07 1.1E-11 108.3 13.3 80 1066-1159 501-585 (1518)
186 TIGR02562 cas3_yersinia CRISPR 98.5 7.1E-07 1.5E-11 112.3 14.8 72 1065-1152 787-882 (1110)
187 PF06800 Sugar_transport: Suga 98.5 1.8E-06 3.9E-11 94.8 16.3 209 126-349 43-268 (269)
188 PF07652 Flavi_DEAD: Flaviviru 98.5 2.4E-07 5.3E-12 91.1 7.1 98 792-920 3-107 (148)
189 COG2510 Predicted membrane pro 98.4 7.7E-07 1.7E-11 84.1 8.9 129 69-200 9-139 (140)
190 PRK12902 secA preprotein trans 98.4 8.4E-06 1.8E-10 101.5 20.0 100 825-924 99-222 (939)
191 PF00892 EamA: EamA-like trans 98.4 3.6E-07 7.8E-12 90.3 6.5 120 77-199 5-125 (126)
192 KOG0384|consensus 98.3 4.8E-06 1E-10 104.5 14.7 80 1062-1155 721-802 (1373)
193 PF00892 EamA: EamA-like trans 98.3 1.2E-06 2.7E-11 86.5 7.2 124 218-351 1-125 (126)
194 PF13536 EmrE: Multidrug resis 98.3 7.9E-07 1.7E-11 86.5 5.6 78 126-204 32-110 (113)
195 PF02399 Herpes_ori_bp: Origin 98.2 3.4E-05 7.4E-10 95.3 18.3 104 791-921 47-155 (824)
196 TIGR03117 cas_csf4 CRISPR-asso 98.1 2.4E-06 5.1E-11 105.5 6.5 50 820-869 12-67 (636)
197 KOG1000|consensus 98.1 4E-05 8.7E-10 87.7 15.3 81 1061-1155 513-594 (689)
198 PRK15430 putative chlorampheni 98.1 3.5E-05 7.6E-10 88.6 14.8 140 205-351 5-144 (296)
199 TIGR00688 rarD rarD protein. T 98.1 3.5E-05 7.6E-10 86.7 13.0 139 208-351 2-141 (256)
200 KOG0389|consensus 98.0 6.5E-05 1.4E-09 90.7 14.9 79 1063-1155 800-879 (941)
201 KOG0392|consensus 98.0 7.7E-05 1.7E-09 93.7 15.4 71 1069-1155 1372-1445(1549)
202 KOG0952|consensus 98.0 3.3E-06 7.1E-11 104.4 3.7 151 824-976 943-1121(1230)
203 TIGR00950 2A78 Carboxylate/Ami 97.9 0.0001 2.2E-09 83.1 13.9 132 63-196 128-260 (260)
204 PRK07246 bifunctional ATP-depe 97.9 1.3E-05 2.7E-10 103.7 6.6 46 820-865 260-308 (820)
205 TIGR03340 phn_DUF6 phosphonate 97.9 6E-05 1.3E-09 86.1 11.2 133 210-352 3-135 (281)
206 PRK13499 rhamnose-proton sympo 97.9 0.00086 1.9E-08 77.1 20.3 286 62-353 6-342 (345)
207 PF05653 Mg_trans_NIPA: Magnes 97.9 5.5E-05 1.2E-09 86.2 10.4 210 137-354 59-294 (300)
208 PRK12901 secA preprotein trans 97.8 0.00038 8.3E-09 88.1 17.7 98 1040-1155 627-734 (1112)
209 KOG0330|consensus 97.8 0.0002 4.3E-09 80.3 12.5 71 986-1058 296-367 (476)
210 KOG1002|consensus 97.8 0.00016 3.6E-09 82.6 11.9 78 1061-1152 659-737 (791)
211 PF03151 TPT: Triose-phosphate 97.7 0.00045 9.8E-09 71.0 12.5 134 66-199 3-152 (153)
212 PLN00411 nodulin MtN21 family 97.6 0.00041 8.9E-09 81.4 12.3 138 208-352 13-156 (358)
213 PF00176 SNF2_N: SNF2 family N 97.6 0.00015 3.3E-09 83.4 8.5 92 850-944 60-168 (299)
214 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.00051 1.1E-08 66.2 8.7 65 136-200 45-109 (111)
215 PRK10532 threonine and homoser 97.5 0.0011 2.3E-08 76.4 12.9 132 64-200 149-281 (293)
216 KOG0386|consensus 97.4 0.00022 4.9E-09 88.3 7.5 78 1064-1155 750-829 (1157)
217 PRK08074 bifunctional ATP-depe 97.4 0.00019 4.2E-09 94.6 6.9 47 1073-1121 787-836 (928)
218 COG2962 RarD Predicted permeas 97.4 0.0016 3.5E-08 71.3 12.6 142 206-355 5-147 (293)
219 PRK11453 O-acetylserine/cystei 97.3 0.0017 3.6E-08 74.9 12.8 139 63-201 143-288 (299)
220 PRK11689 aromatic amino acid e 97.3 0.0011 2.4E-08 76.2 11.3 131 64-200 157-287 (295)
221 PF13536 EmrE: Multidrug resis 97.2 0.0019 4E-08 62.8 9.8 104 247-355 5-109 (113)
222 PRK11272 putative DMT superfam 97.2 0.0024 5.1E-08 73.4 12.4 133 65-201 152-286 (292)
223 KOG1580|consensus 97.2 0.00033 7.2E-09 73.0 4.6 109 618-728 49-158 (337)
224 KOG2922|consensus 97.1 0.0013 2.7E-08 72.9 8.3 213 135-353 70-307 (335)
225 COG4975 GlcU Putative glucose 97.1 0.00016 3.4E-09 76.4 1.0 218 121-353 52-286 (288)
226 COG0610 Type I site-specific r 97.0 0.0056 1.2E-07 80.6 14.2 97 824-920 273-388 (962)
227 KOG4439|consensus 97.0 0.0048 1E-07 74.2 11.4 80 1062-1155 768-849 (901)
228 PRK02971 4-amino-4-deoxy-L-ara 96.9 0.0081 1.8E-07 59.5 10.8 121 208-355 2-125 (129)
229 PF06027 DUF914: Eukaryotic pr 96.8 0.0047 1E-07 71.1 9.7 131 601-732 23-156 (334)
230 PRK02971 4-amino-4-deoxy-L-ara 96.8 0.0096 2.1E-07 59.0 10.5 70 132-201 51-123 (129)
231 TIGR00776 RhaT RhaT L-rhamnose 96.7 0.014 3.1E-07 66.8 12.2 129 62-200 151-288 (290)
232 PF13086 AAA_11: AAA domain; P 96.6 0.011 2.3E-07 65.2 10.8 49 822-870 14-75 (236)
233 PF13245 AAA_19: Part of AAA d 96.6 0.004 8.7E-08 55.6 5.6 42 827-868 13-62 (76)
234 PF07517 SecA_DEAD: SecA DEAD- 96.5 0.0024 5.1E-08 71.1 4.6 95 826-920 92-209 (266)
235 KOG0343|consensus 96.4 0.024 5.2E-07 66.7 11.8 70 988-1059 311-383 (758)
236 KOG1581|consensus 96.3 0.031 6.7E-07 61.6 11.1 136 593-730 11-158 (327)
237 KOG1802|consensus 96.2 0.0087 1.9E-07 71.5 6.9 55 820-874 421-480 (935)
238 KOG1583|consensus 96.2 0.0021 4.6E-08 69.1 1.8 130 592-728 6-138 (330)
239 PRK10452 multidrug efflux syst 96.2 0.0061 1.3E-07 59.2 4.6 70 132-201 34-104 (120)
240 PF04142 Nuc_sug_transp: Nucle 96.2 0.0074 1.6E-07 67.0 5.9 80 653-732 14-94 (244)
241 COG0697 RhaT Permeases of the 96.2 0.05 1.1E-06 62.0 13.0 77 124-200 210-287 (292)
242 PRK13499 rhamnose-proton sympo 96.1 0.038 8.3E-07 63.8 11.6 143 207-356 6-157 (345)
243 PF09848 DUF2075: Uncharacteri 96.1 0.0063 1.4E-07 71.8 5.1 60 847-922 30-97 (352)
244 KOG1803|consensus 96.1 0.0088 1.9E-07 71.5 6.1 39 892-933 338-380 (649)
245 PF13604 AAA_30: AAA domain; P 96.0 0.018 3.9E-07 61.9 7.9 85 848-950 46-133 (196)
246 COG0653 SecA Preprotein transl 96.0 0.27 5.8E-06 62.3 18.6 100 821-920 90-212 (822)
247 PRK15051 4-amino-4-deoxy-L-ara 95.7 0.052 1.1E-06 52.4 8.7 55 296-351 54-108 (111)
248 PRK09541 emrE multidrug efflux 95.7 0.015 3.2E-07 55.8 4.7 66 135-200 37-103 (110)
249 smart00488 DEXDc2 DEAD-like he 95.6 0.014 2.9E-07 66.8 5.0 51 821-871 24-84 (289)
250 smart00489 DEXDc3 DEAD-like he 95.6 0.014 2.9E-07 66.8 5.0 51 821-871 24-84 (289)
251 PRK11431 multidrug efflux syst 95.5 0.02 4.2E-07 54.4 5.0 66 134-199 35-101 (105)
252 KOG0391|consensus 95.5 0.044 9.6E-07 69.3 9.0 56 1063-1118 1299-1355(1958)
253 TIGR00376 DNA helicase, putati 95.4 0.035 7.5E-07 70.3 8.3 39 794-835 174-212 (637)
254 PRK10650 multidrug efflux syst 95.4 0.023 5.1E-07 54.2 5.0 64 135-198 42-106 (109)
255 PRK15483 type III restriction- 95.3 0.065 1.4E-06 69.1 10.0 47 823-869 58-110 (986)
256 PF06862 DUF1253: Protein of u 95.3 0.83 1.8E-05 54.6 18.5 53 1064-1118 324-379 (442)
257 COG2076 EmrE Membrane transpor 95.3 0.022 4.8E-07 53.4 4.3 67 134-200 36-103 (106)
258 PF04657 DUF606: Protein of un 95.1 0.096 2.1E-06 52.7 8.6 133 209-349 2-138 (138)
259 PF02562 PhoH: PhoH-like prote 95.0 0.095 2.1E-06 56.2 8.9 55 892-950 102-158 (205)
260 KOG1582|consensus 94.9 0.12 2.7E-06 55.7 9.2 148 608-766 60-219 (367)
261 PRK06526 transposase; Provisio 94.1 0.1 2.2E-06 58.3 6.8 74 821-921 95-172 (254)
262 PRK04296 thymidine kinase; Pro 94.0 0.022 4.8E-07 60.9 1.2 21 794-814 3-23 (190)
263 PRK08181 transposase; Validate 94.0 0.11 2.5E-06 58.3 6.9 73 821-921 103-180 (269)
264 COG1484 DnaC DNA replication p 94.0 0.11 2.5E-06 58.0 6.8 73 821-920 102-179 (254)
265 PF06800 Sugar_transport: Suga 93.8 0.43 9.2E-06 53.2 10.8 127 63-197 138-268 (269)
266 TIGR00803 nst UDP-galactose tr 93.7 0.55 1.2E-05 51.5 11.6 65 133-197 157-221 (222)
267 TIGR00604 rad3 DNA repair heli 93.6 0.15 3.2E-06 66.0 7.9 45 1077-1121 565-616 (705)
268 PRK10452 multidrug efflux syst 93.4 0.18 4E-06 49.1 6.3 56 298-354 49-105 (120)
269 PF13245 AAA_19: Part of AAA d 93.4 0.1 2.2E-06 46.6 4.2 41 793-834 10-52 (76)
270 COG5006 rhtA Threonine/homoser 93.4 0.5 1.1E-05 51.0 9.8 133 63-199 148-281 (292)
271 PRK12723 flagellar biosynthesi 93.3 0.28 6E-06 58.1 8.9 91 792-921 173-267 (388)
272 PRK09541 emrE multidrug efflux 93.3 0.43 9.2E-06 45.9 8.6 56 298-354 49-105 (110)
273 KOG2234|consensus 93.2 1.1 2.5E-05 51.0 13.1 142 212-354 19-166 (345)
274 PF00893 Multi_Drug_Res: Small 93.1 0.13 2.8E-06 47.9 4.7 56 136-191 37-93 (93)
275 PF07857 DUF1632: CEO family ( 92.9 0.092 2E-06 58.0 3.9 134 209-358 1-140 (254)
276 PRK08727 hypothetical protein; 92.9 0.24 5.2E-06 54.8 7.3 16 906-921 91-106 (233)
277 PRK10536 hypothetical protein; 92.8 0.13 2.9E-06 56.7 5.0 52 893-948 160-213 (262)
278 PF13401 AAA_22: AAA domain; P 92.8 0.17 3.7E-06 50.1 5.4 12 910-921 89-100 (131)
279 KOG3912|consensus 92.7 0.42 9E-06 52.1 8.3 89 656-744 86-177 (372)
280 PRK11747 dinG ATP-dependent DN 92.7 0.13 2.9E-06 66.1 5.4 44 1078-1121 569-617 (697)
281 COG2076 EmrE Membrane transpor 92.6 0.51 1.1E-05 44.5 7.7 55 298-353 49-104 (106)
282 KOG0058|consensus 92.5 0.47 1E-05 58.9 9.4 219 695-940 389-654 (716)
283 KOG1805|consensus 92.5 0.19 4.1E-06 63.4 6.1 98 824-921 685-809 (1100)
284 PF00270 DEAD: DEAD/DEAH box h 92.4 0.13 2.8E-06 53.4 4.1 40 792-834 13-54 (169)
285 cd00009 AAA The AAA+ (ATPases 92.4 0.32 7E-06 48.5 7.0 15 906-920 82-96 (151)
286 COG1199 DinG Rad3-related DNA 92.4 0.13 2.9E-06 66.1 5.0 49 821-869 31-84 (654)
287 PHA03368 DNA packaging termina 92.1 0.73 1.6E-05 56.9 10.2 113 792-933 253-373 (738)
288 KOG4510|consensus 92.0 0.15 3.3E-06 55.0 3.9 83 112-195 238-320 (346)
289 PRK11431 multidrug efflux syst 91.7 0.78 1.7E-05 43.7 8.0 54 298-352 48-102 (105)
290 PF05653 Mg_trans_NIPA: Magnes 91.7 0.43 9.4E-06 54.7 7.6 119 205-352 4-122 (300)
291 PRK10650 multidrug efflux syst 91.4 0.84 1.8E-05 43.7 7.9 53 298-351 54-107 (109)
292 PRK08084 DNA replication initi 91.4 0.16 3.5E-06 56.2 3.5 19 823-841 44-62 (235)
293 COG0553 HepA Superfamily II DN 91.3 0.23 5.1E-06 66.3 5.7 80 1062-1155 733-813 (866)
294 PRK12377 putative replication 91.3 0.3 6.5E-06 54.3 5.6 72 824-920 101-175 (248)
295 PF05496 RuvB_N: Holliday junc 91.2 0.35 7.7E-06 52.1 5.7 24 906-934 99-122 (233)
296 TIGR01448 recD_rel helicase, p 91.2 0.37 8.1E-06 62.1 7.0 37 907-947 415-452 (720)
297 PRK06921 hypothetical protein; 91.1 0.32 6.8E-06 54.9 5.5 67 824-919 117-188 (266)
298 TIGR03420 DnaA_homol_Hda DnaA 90.9 0.59 1.3E-05 51.3 7.5 19 823-841 37-55 (226)
299 COG3238 Uncharacterized protei 90.9 1.1 2.5E-05 45.1 8.5 138 207-351 4-145 (150)
300 PF10639 UPF0546: Uncharacteri 90.8 0.27 5.8E-06 47.2 3.9 69 129-198 43-112 (113)
301 PF05621 TniB: Bacterial TniB 90.8 0.72 1.6E-05 52.1 7.9 21 796-817 64-84 (302)
302 KOG2765|consensus 90.7 0.73 1.6E-05 52.6 7.7 142 62-203 246-393 (416)
303 KOG0336|consensus 90.6 2.1 4.6E-05 49.1 11.2 66 992-1059 467-533 (629)
304 PF04657 DUF606: Protein of un 90.6 3.5 7.5E-05 41.5 11.9 128 67-197 5-138 (138)
305 PF00580 UvrD-helicase: UvrD/R 90.4 0.29 6.2E-06 56.6 4.7 47 824-870 13-67 (315)
306 TIGR00604 rad3 DNA repair heli 90.4 0.29 6.2E-06 63.4 5.0 51 820-870 25-82 (705)
307 TIGR01447 recD exodeoxyribonuc 90.4 0.92 2E-05 57.0 9.3 37 907-947 258-295 (586)
308 PRK11776 ATP-dependent RNA hel 90.3 0.13 2.9E-06 63.1 1.9 46 789-834 37-82 (460)
309 PRK10875 recD exonuclease V su 90.1 0.43 9.3E-06 60.0 6.1 37 907-947 264-301 (615)
310 PTZ00110 helicase; Provisional 90.1 0.3 6.5E-06 61.2 4.7 41 1017-1059 405-445 (545)
311 PTZ00293 thymidine kinase; Pro 90.1 0.53 1.1E-05 50.6 5.8 22 793-814 4-25 (211)
312 PRK08116 hypothetical protein; 89.9 0.84 1.8E-05 51.6 7.7 73 825-920 115-190 (268)
313 PF05970 PIF1: PIF1-like helic 89.8 0.42 9.1E-06 56.7 5.3 87 823-921 21-115 (364)
314 PF06379 RhaT: L-rhamnose-prot 89.8 27 0.00058 40.2 19.1 165 61-229 5-194 (344)
315 PHA03311 helicase-primase subu 89.7 1.5 3.2E-05 54.7 9.8 49 789-869 67-115 (828)
316 PRK06893 DNA replication initi 89.7 0.71 1.5E-05 50.9 6.7 16 906-921 89-104 (229)
317 COG2256 MGS1 ATPase related to 89.6 0.43 9.3E-06 55.2 4.9 36 911-951 107-143 (436)
318 cd00046 DEXDc DEAD-like helica 89.6 0.39 8.4E-06 47.4 4.3 39 795-834 2-40 (144)
319 PF13173 AAA_14: AAA domain 89.5 1.6 3.4E-05 43.3 8.5 17 793-809 2-18 (128)
320 PRK07952 DNA replication prote 89.5 0.79 1.7E-05 50.9 6.9 73 825-923 100-177 (244)
321 PF13872 AAA_34: P-loop contai 89.5 1.5 3.2E-05 49.6 8.9 97 825-923 63-187 (303)
322 PTZ00424 helicase 45; Provisio 89.4 0.3 6.5E-06 58.8 3.9 41 1016-1058 294-334 (401)
323 PF01443 Viral_helicase1: Vira 89.0 0.79 1.7E-05 50.5 6.6 39 907-949 61-99 (234)
324 PRK05642 DNA replication initi 89.0 0.72 1.6E-05 51.1 6.2 17 905-921 94-110 (234)
325 cd00268 DEADc DEAD-box helicas 89.0 0.38 8.2E-06 51.8 3.9 42 792-833 35-78 (203)
326 TIGR01587 cas3_core CRISPR-ass 88.9 0.31 6.7E-06 57.7 3.5 38 795-833 1-38 (358)
327 PRK04837 ATP-dependent RNA hel 88.9 0.33 7.2E-06 58.9 3.8 42 1016-1059 282-323 (423)
328 KOG2340|consensus 88.8 1.6 3.5E-05 51.8 8.9 54 1084-1150 596-652 (698)
329 PLN00206 DEAD-box ATP-dependen 88.7 0.22 4.8E-06 62.0 2.1 66 991-1058 368-435 (518)
330 KOG0335|consensus 88.7 0.39 8.5E-06 57.1 3.9 21 821-841 108-128 (482)
331 COG3973 Superfamily I DNA and 88.6 0.82 1.8E-05 55.3 6.4 105 736-873 177-285 (747)
332 PF13307 Helicase_C_2: Helicas 88.5 0.39 8.5E-06 50.1 3.5 75 1076-1152 45-140 (167)
333 COG4975 GlcU Putative glucose 88.5 0.35 7.6E-06 51.9 3.0 133 208-355 2-139 (288)
334 PRK08903 DnaA regulatory inact 88.3 2.3 4.9E-05 46.8 9.5 20 822-841 40-59 (227)
335 PRK14974 cell division protein 88.1 0.85 1.8E-05 53.1 6.1 17 793-809 140-156 (336)
336 PRK11634 ATP-dependent RNA hel 88.0 0.39 8.4E-06 61.0 3.6 45 790-834 40-84 (629)
337 PF12340 DUF3638: Protein of u 87.8 0.83 1.8E-05 49.6 5.4 47 823-870 40-91 (229)
338 TIGR01970 DEAH_box_HrpB ATP-de 87.7 0.45 9.8E-06 61.9 4.0 40 792-834 16-55 (819)
339 KOG0388|consensus 87.7 1.6 3.5E-05 53.3 8.1 79 1062-1155 1066-1145(1185)
340 KOG0331|consensus 87.6 0.58 1.3E-05 56.6 4.5 58 1019-1084 371-428 (519)
341 PRK05703 flhF flagellar biosyn 87.5 2.9 6.3E-05 50.5 10.5 18 793-810 221-238 (424)
342 COG2255 RuvB Holliday junction 87.4 1.1 2.3E-05 49.7 5.9 21 902-922 97-117 (332)
343 KOG0989|consensus 87.3 0.99 2.1E-05 50.5 5.7 30 811-841 45-74 (346)
344 KOG0388|consensus 87.2 1.6 3.4E-05 53.4 7.6 31 1002-1032 1057-1087(1185)
345 PF01695 IstB_IS21: IstB-like 87.1 0.87 1.9E-05 48.1 5.1 75 819-920 42-120 (178)
346 TIGR03877 thermo_KaiC_1 KaiC d 86.5 0.75 1.6E-05 51.0 4.5 54 820-874 17-74 (237)
347 COG1219 ClpX ATP-dependent pro 86.5 0.58 1.2E-05 52.3 3.3 26 822-847 95-122 (408)
348 PRK00411 cdc6 cell division co 86.4 3.1 6.8E-05 49.9 10.1 15 907-921 137-151 (394)
349 PRK01172 ski2-like helicase; P 86.3 0.51 1.1E-05 61.0 3.4 43 1014-1058 286-328 (674)
350 PRK14964 DNA polymerase III su 86.2 1.9 4.1E-05 52.7 7.9 19 904-922 112-130 (491)
351 PF00265 TK: Thymidine kinase; 86.0 1.5 3.2E-05 46.2 6.0 21 794-814 2-22 (176)
352 KOG0391|consensus 86.0 1.3 2.8E-05 57.0 6.3 98 850-949 667-777 (1958)
353 PHA03333 putative ATPase subun 85.9 2.8 6.2E-05 52.2 9.1 107 847-957 215-342 (752)
354 PRK11664 ATP-dependent RNA hel 85.4 0.68 1.5E-05 60.4 3.8 40 792-834 19-58 (812)
355 TIGR00614 recQ_fam ATP-depende 85.2 0.38 8.2E-06 59.3 1.4 52 1019-1078 256-307 (470)
356 PRK14722 flhF flagellar biosyn 85.2 4.1 8.8E-05 48.1 9.7 18 792-809 136-153 (374)
357 PRK11192 ATP-dependent RNA hel 85.1 0.71 1.5E-05 56.3 3.6 46 789-834 34-83 (434)
358 PRK00149 dnaA chromosomal repl 85.0 1.1 2.3E-05 55.0 5.1 71 825-922 149-225 (450)
359 TIGR03499 FlhF flagellar biosy 84.7 1.3 2.7E-05 50.6 5.2 28 404-431 8-35 (282)
360 TIGR00362 DnaA chromosomal rep 84.5 2 4.3E-05 51.9 7.1 71 825-922 137-213 (405)
361 PRK10590 ATP-dependent RNA hel 84.3 0.8 1.7E-05 56.2 3.7 55 1017-1079 273-327 (456)
362 KOG1015|consensus 84.3 3.7 8E-05 52.0 9.0 79 1063-1155 1187-1268(1567)
363 KOG0345|consensus 84.3 0.82 1.8E-05 53.5 3.3 48 787-834 37-89 (567)
364 PF06745 KaiC: KaiC; InterPro 84.1 1.1 2.4E-05 49.2 4.3 54 820-874 15-73 (226)
365 PRK14956 DNA polymerase III su 84.0 0.45 9.8E-06 57.4 1.2 17 906-922 119-135 (484)
366 TIGR03878 thermo_KaiC_2 KaiC d 84.0 1.8 3.8E-05 48.8 5.9 27 847-873 63-92 (259)
367 TIGR00631 uvrb excinuclease AB 83.7 1.6 3.4E-05 55.7 5.9 66 804-872 11-78 (655)
368 PRK14087 dnaA chromosomal repl 83.7 2.1 4.6E-05 52.1 6.9 71 825-921 142-219 (450)
369 PRK08939 primosomal protein Dn 83.5 1.6 3.6E-05 50.2 5.5 19 902-920 211-229 (306)
370 PRK14949 DNA polymerase III su 83.5 1.9 4.1E-05 55.6 6.4 16 906-921 117-132 (944)
371 PRK14958 DNA polymerase III su 83.3 2.5 5.3E-05 52.3 7.2 17 906-922 117-133 (509)
372 PF13871 Helicase_C_4: Helicas 83.3 1.6 3.5E-05 48.9 5.1 62 1084-1153 55-117 (278)
373 KOG0344|consensus 83.2 1 2.2E-05 54.3 3.6 65 992-1058 389-455 (593)
374 PRK02362 ski2-like helicase; P 83.2 0.85 1.8E-05 59.5 3.4 43 1014-1058 304-346 (737)
375 PRK13851 type IV secretion sys 83.1 0.88 1.9E-05 53.1 3.1 41 821-861 159-202 (344)
376 KOG0348|consensus 83.1 1.1 2.4E-05 53.2 3.8 43 1015-1059 473-515 (708)
377 COG1201 Lhr Lhr-like helicases 82.9 0.63 1.4E-05 59.5 1.9 31 788-818 32-62 (814)
378 PRK07003 DNA polymerase III su 82.9 2.2 4.8E-05 54.0 6.6 17 906-922 117-133 (830)
379 PRK11823 DNA repair protein Ra 82.9 2 4.3E-05 52.3 6.1 84 820-921 76-169 (446)
380 PF13604 AAA_30: AAA domain; P 82.7 0.88 1.9E-05 48.9 2.7 45 792-839 17-61 (196)
381 KOG2227|consensus 82.7 4.8 0.0001 47.7 8.7 153 795-958 142-307 (529)
382 PRK04537 ATP-dependent RNA hel 82.6 1.1 2.4E-05 56.5 3.9 42 1016-1059 284-325 (572)
383 PRK07940 DNA polymerase III su 82.4 2.6 5.7E-05 50.3 6.8 17 906-922 115-131 (394)
384 COG4128 Zot Zonula occludens t 82.4 3.2 7E-05 45.9 6.7 20 795-814 3-22 (398)
385 cd01120 RecA-like_NTPases RecA 82.3 2.7 5.8E-05 42.9 6.1 17 906-922 83-99 (165)
386 COG1419 FlhF Flagellar GTP-bin 82.2 9.3 0.0002 45.0 10.8 28 403-430 7-34 (407)
387 COG2805 PilT Tfp pilus assembl 82.1 1.9 4.2E-05 48.1 5.0 16 794-809 126-141 (353)
388 PF03354 Terminase_1: Phage Te 82.0 5.2 0.00011 49.3 9.5 73 848-922 54-137 (477)
389 PLN03025 replication factor C 81.8 3.3 7.2E-05 48.1 7.3 16 907-922 98-113 (319)
390 PRK14962 DNA polymerase III su 81.8 2.7 5.8E-05 51.5 6.7 18 905-922 114-131 (472)
391 PRK14961 DNA polymerase III su 81.6 3.5 7.5E-05 49.0 7.4 17 906-922 117-133 (363)
392 cd01121 Sms Sms (bacterial rad 81.6 2.5 5.4E-05 50.0 6.2 83 821-921 79-171 (372)
393 COG1435 Tdk Thymidine kinase [ 81.6 4.3 9.4E-05 42.8 7.1 22 793-814 4-25 (201)
394 PRK12422 chromosomal replicati 81.6 4.8 0.0001 49.0 8.7 71 825-922 142-216 (445)
395 PRK14960 DNA polymerase III su 81.6 3 6.6E-05 52.2 7.0 17 906-922 116-132 (702)
396 PRK12402 replication factor C 81.5 1 2.2E-05 52.8 2.9 17 906-922 123-139 (337)
397 TIGR02928 orc1/cdc6 family rep 81.5 5.4 0.00012 47.3 9.2 15 907-921 128-142 (365)
398 PRK04195 replication factor C 81.5 4 8.7E-05 50.4 8.2 15 908-922 98-112 (482)
399 PF00448 SRP54: SRP54-type pro 81.3 2.1 4.5E-05 46.0 4.9 16 794-809 2-17 (196)
400 COG0513 SrmB Superfamily II DN 81.3 0.9 2E-05 56.4 2.4 41 1018-1060 302-342 (513)
401 PRK05563 DNA polymerase III su 81.1 3.3 7.1E-05 52.0 7.3 18 905-922 116-133 (559)
402 PF05127 Helicase_RecD: Helica 80.8 0.83 1.8E-05 47.8 1.6 91 829-920 2-102 (177)
403 PRK13342 recombination factor 80.6 3.2 7E-05 50.1 6.8 15 908-922 92-106 (413)
404 PF04851 ResIII: Type III rest 80.5 1.4 3.1E-05 46.1 3.3 35 793-833 25-59 (184)
405 PF01745 IPT: Isopentenyl tran 80.3 0.98 2.1E-05 48.1 1.9 21 794-814 2-22 (233)
406 PHA02544 44 clamp loader, smal 80.2 4.2 9.1E-05 47.2 7.4 15 907-921 99-113 (316)
407 smart00489 DEXDc3 DEAD-like he 80.1 3.8 8.2E-05 46.9 6.8 79 792-871 26-109 (289)
408 smart00488 DEXDc2 DEAD-like he 80.1 3.8 8.2E-05 46.9 6.8 79 792-871 26-109 (289)
409 PRK12727 flagellar biosynthesi 79.9 5.2 0.00011 49.0 8.1 16 905-920 425-440 (559)
410 PF00448 SRP54: SRP54-type pro 79.9 1.2 2.7E-05 47.7 2.6 48 827-874 4-58 (196)
411 PF12775 AAA_7: P-loop contain 79.8 4.7 0.0001 45.7 7.3 25 792-817 32-56 (272)
412 PRK14952 DNA polymerase III su 79.6 4.5 9.8E-05 50.7 7.7 17 906-922 116-132 (584)
413 PRK01297 ATP-dependent RNA hel 79.4 1.6 3.4E-05 54.0 3.6 39 1018-1058 364-402 (475)
414 PHA00350 putative assembly pro 79.3 13 0.00028 44.2 10.9 19 795-813 3-21 (399)
415 PF00308 Bac_DnaA: Bacterial d 79.1 3.1 6.6E-05 45.6 5.4 19 904-922 93-111 (219)
416 PF06379 RhaT: L-rhamnose-prot 79.1 12 0.00025 43.1 9.9 144 207-356 6-157 (344)
417 TIGR02768 TraA_Ti Ti-type conj 78.9 2.6 5.6E-05 54.8 5.5 16 906-921 437-452 (744)
418 PRK14088 dnaA chromosomal repl 78.9 6.1 0.00013 48.1 8.4 71 825-922 131-208 (440)
419 PRK00080 ruvB Holliday junctio 78.8 2.9 6.3E-05 48.8 5.5 17 906-922 100-116 (328)
420 PRK13767 ATP-dependent helicas 78.7 1.5 3.3E-05 58.0 3.5 44 790-833 44-93 (876)
421 PRK04328 hypothetical protein; 78.6 2.4 5.2E-05 47.4 4.5 53 821-874 20-76 (249)
422 PRK00254 ski2-like helicase; P 78.5 1.6 3.5E-05 56.8 3.5 43 1014-1058 296-338 (720)
423 PRK08691 DNA polymerase III su 78.4 3.9 8.4E-05 51.7 6.6 17 906-922 117-133 (709)
424 PRK06645 DNA polymerase III su 78.3 1.2 2.5E-05 54.9 2.0 19 904-922 124-142 (507)
425 PRK11057 ATP-dependent DNA hel 78.3 1.4 3E-05 56.1 2.8 38 790-833 37-74 (607)
426 KOG0745|consensus 78.2 2 4.3E-05 50.1 3.6 28 822-849 224-253 (564)
427 TIGR01389 recQ ATP-dependent D 78.1 1.7 3.6E-05 55.3 3.4 38 790-833 25-62 (591)
428 PF02689 Herpes_Helicase: Heli 77.8 7.9 0.00017 48.6 8.7 24 790-814 56-79 (818)
429 TIGR03817 DECH_helic helicase/ 77.8 1.8 3.9E-05 56.2 3.6 44 789-833 47-90 (742)
430 smart00487 DEXDc DEAD-like hel 77.8 2.6 5.6E-05 44.4 4.3 44 794-838 25-68 (201)
431 PRK00771 signal recognition pa 77.7 3.2 6.9E-05 50.2 5.4 19 792-810 94-112 (437)
432 TIGR02688 conserved hypothetic 77.6 3 6.4E-05 49.5 4.9 21 821-841 206-226 (449)
433 smart00382 AAA ATPases associa 77.4 2.4 5.2E-05 41.7 3.7 15 909-923 79-93 (148)
434 TIGR00635 ruvB Holliday juncti 77.4 3.2 7E-05 47.8 5.3 16 907-922 80-95 (305)
435 PRK05896 DNA polymerase III su 77.3 9.2 0.0002 47.8 9.3 16 906-921 117-132 (605)
436 PF13086 AAA_11: AAA domain; P 77.2 2.4 5.1E-05 46.4 3.9 40 795-835 19-64 (236)
437 cd01124 KaiC KaiC is a circadi 77.0 2.6 5.7E-05 44.5 4.1 46 828-874 3-52 (187)
438 PRK13341 recombination factor 76.8 5.9 0.00013 51.1 7.8 17 825-841 53-69 (725)
439 PRK10865 protein disaggregatio 76.8 10 0.00022 50.3 10.1 43 910-952 273-319 (857)
440 TIGR01547 phage_term_2 phage t 76.7 8.1 0.00018 46.4 8.7 86 847-936 31-125 (396)
441 PRK05580 primosome assembly pr 76.5 2.1 4.5E-05 55.2 3.6 60 998-1059 435-498 (679)
442 COG1204 Superfamily II helicas 76.4 1.5 3.3E-05 56.6 2.4 44 792-841 46-90 (766)
443 PF00893 Multi_Drug_Res: Small 76.4 7.8 0.00017 36.1 6.5 54 289-343 38-93 (93)
444 PRK11889 flhF flagellar biosyn 76.4 12 0.00026 44.3 9.3 23 400-422 11-33 (436)
445 COG0324 MiaA tRNA delta(2)-iso 76.3 2.1 4.6E-05 48.7 3.2 47 793-840 3-52 (308)
446 PRK14969 DNA polymerase III su 76.3 4.9 0.00011 50.1 6.7 17 906-922 117-133 (527)
447 TIGR01425 SRP54_euk signal rec 76.2 4.1 9E-05 48.8 5.8 17 793-809 100-116 (429)
448 TIGR02782 TrbB_P P-type conjug 76.0 2.5 5.4E-05 48.6 3.7 41 821-861 129-175 (299)
449 PF05297 Herpes_LMP1: Herpesvi 75.9 0.87 1.9E-05 49.5 0.0 93 152-246 47-143 (381)
450 COG0470 HolB ATPase involved i 75.8 7.9 0.00017 44.9 8.1 17 906-922 107-123 (325)
451 KOG1803|consensus 75.7 2.4 5.2E-05 51.6 3.5 30 843-872 224-253 (649)
452 PRK07764 DNA polymerase III su 75.5 5.8 0.00013 51.8 7.3 17 906-922 118-134 (824)
453 PRK13900 type IV secretion sys 75.4 2.5 5.5E-05 49.2 3.7 41 821-861 157-200 (332)
454 COG3238 Uncharacterized protei 75.3 31 0.00067 35.0 10.7 133 64-199 6-145 (150)
455 PRK05973 replicative DNA helic 75.2 4.8 0.0001 44.4 5.5 52 821-873 61-116 (237)
456 PRK14086 dnaA chromosomal repl 75.1 5 0.00011 50.1 6.3 17 906-922 375-391 (617)
457 TIGR00595 priA primosomal prot 75.0 1.7 3.7E-05 53.8 2.3 57 1001-1059 270-330 (505)
458 PRK13833 conjugal transfer pro 74.8 2.5 5.3E-05 49.0 3.3 40 821-860 141-186 (323)
459 TIGR01407 dinG_rel DnaQ family 74.7 2.8 6E-05 55.7 4.2 43 1077-1121 712-757 (850)
460 PRK06835 DNA replication prote 74.6 4.7 0.0001 46.9 5.6 75 823-921 182-259 (329)
461 PRK07994 DNA polymerase III su 74.6 6.8 0.00015 49.6 7.3 17 906-922 117-133 (647)
462 KOG0340|consensus 74.6 3.5 7.6E-05 46.8 4.2 40 1017-1058 282-321 (442)
463 PRK08074 bifunctional ATP-depe 74.5 9.1 0.0002 51.3 8.9 47 820-866 272-323 (928)
464 PRK14959 DNA polymerase III su 74.4 6.3 0.00014 49.5 6.9 16 906-921 117-132 (624)
465 KOG0060|consensus 74.4 2.6 5.6E-05 51.1 3.3 54 782-841 425-478 (659)
466 PRK14965 DNA polymerase III su 74.2 6.7 0.00014 49.5 7.2 18 905-922 116-133 (576)
467 PRK14957 DNA polymerase III su 74.2 6 0.00013 49.1 6.7 17 906-922 117-133 (546)
468 PRK12724 flagellar biosynthesi 73.9 6.7 0.00015 46.8 6.6 27 406-432 10-36 (432)
469 KOG0991|consensus 73.9 1 2.2E-05 48.1 -0.0 16 907-922 112-127 (333)
470 TIGR03158 cas3_cyano CRISPR-as 73.8 2.7 5.9E-05 49.7 3.5 34 794-833 15-48 (357)
471 PRK06995 flhF flagellar biosyn 73.6 19 0.00042 44.0 10.6 44 405-464 9-52 (484)
472 PRK09183 transposase/IS protei 73.5 4.9 0.00011 45.2 5.3 44 821-865 99-146 (259)
473 cd01126 TraG_VirD4 The TraG/Tr 73.2 2.9 6.3E-05 50.0 3.6 51 827-877 2-54 (384)
474 TIGR03346 chaperone_ClpB ATP-d 73.0 14 0.0003 49.1 10.1 44 909-952 267-314 (852)
475 PRK13833 conjugal transfer pro 73.0 3.4 7.4E-05 47.8 3.9 24 793-817 144-167 (323)
476 PF00437 T2SE: Type II/IV secr 72.5 2.4 5.2E-05 48.0 2.5 25 792-817 126-150 (270)
477 cd00984 DnaB_C DnaB helicase C 72.5 6.2 0.00013 43.7 5.8 45 821-865 10-62 (242)
478 PRK12323 DNA polymerase III su 72.5 10 0.00022 47.7 7.9 17 906-922 122-138 (700)
479 PRK08233 hypothetical protein; 72.4 2.3 5E-05 44.7 2.2 19 792-810 2-20 (182)
480 cd01131 PilT Pilus retraction 72.3 3.4 7.3E-05 44.4 3.5 15 795-809 3-17 (198)
481 COG1444 Predicted P-loop ATPas 72.3 10 0.00022 48.3 8.0 90 826-920 233-335 (758)
482 TIGR02655 circ_KaiC circadian 72.0 4.2 9.1E-05 50.2 4.6 54 820-874 259-316 (484)
483 TIGR02767 TraG-Ti Ti-type conj 71.9 5.9 0.00013 50.0 5.9 54 824-877 211-267 (623)
484 TIGR03881 KaiC_arch_4 KaiC dom 71.8 4.7 0.0001 44.3 4.6 53 820-873 16-72 (229)
485 PRK08533 flagellar accessory p 71.8 4.9 0.00011 44.3 4.6 14 908-921 117-130 (230)
486 smart00492 HELICc3 helicase su 71.7 7.1 0.00015 39.5 5.4 81 1070-1152 27-128 (141)
487 PHA02653 RNA helicase NPH-II; 71.6 2.8 6E-05 53.5 3.0 21 821-841 176-196 (675)
488 PRK14953 DNA polymerase III su 71.5 9.8 0.00021 46.9 7.6 18 905-922 116-133 (486)
489 COG0467 RAD55 RecA-superfamily 71.5 4.2 9.1E-05 45.8 4.2 55 820-875 19-77 (260)
490 PLN03137 ATP-dependent DNA hel 71.4 2.8 6E-05 55.5 2.9 39 789-833 471-509 (1195)
491 PRK13894 conjugal transfer ATP 71.2 4.4 9.5E-05 47.0 4.3 38 823-860 147-190 (319)
492 TIGR00678 holB DNA polymerase 71.1 10 0.00023 40.2 6.9 18 905-922 93-110 (188)
493 PRK10919 ATP-dependent DNA hel 70.9 4.7 0.0001 51.9 4.9 47 824-870 15-69 (672)
494 PRK09401 reverse gyrase; Revie 70.9 3 6.6E-05 56.6 3.3 43 788-833 90-132 (1176)
495 TIGR02525 plasmid_TraJ plasmid 70.9 4.1 8.9E-05 48.1 4.0 16 794-809 150-165 (372)
496 COG4178 ABC-type uncharacteriz 70.8 5.8 0.00013 49.3 5.3 30 906-935 531-560 (604)
497 TIGR01054 rgy reverse gyrase. 70.8 3.2 6.9E-05 56.5 3.4 43 788-833 88-130 (1171)
498 PRK14963 DNA polymerase III su 70.8 9.8 0.00021 47.1 7.4 17 905-921 113-129 (504)
499 KOG0350|consensus 70.6 2.3 5E-05 50.3 1.7 66 991-1058 430-500 (620)
500 TIGR02639 ClpA ATP-dependent C 70.4 9.8 0.00021 49.6 7.7 42 910-951 276-322 (731)
No 1
>KOG0953|consensus
Probab=100.00 E-value=1.4e-72 Score=630.33 Aligned_cols=408 Identities=63% Similarity=1.084 Sum_probs=387.3
Q ss_pred eehhhhHhhcCcCcccchHhHHHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHH
Q psy12699 734 LHVVLSDIIQGAGHVDDMFPYYLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALER 813 (1269)
Q Consensus 734 ~~~~l~~i~~~~~~v~~~~~~~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~ 813 (1269)
++++.+++..++.+++++||+|.+|++|.||+++++|+++++.|++.|.+|||++|.++|++++++||||||||+.|++.
T Consensus 132 l~i~~~di~~g~~~~~~lfp~f~~~~k~~fp~l~~~Ddl~~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqr 211 (700)
T KOG0953|consen 132 LHILTNDIRKGAKDIDFLFPFFLRHAKQEFPELTRMDDLKKISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQR 211 (700)
T ss_pred hhhhhhhhhcCCCchhhhhhHHHHHHHHHhcccccchhhhhhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCC
Q psy12699 814 FLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 814 ~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
+ ...++++|+.|.|.||.++++++++.|++|.++||++++....+...+
T Consensus 212 l-------------------------------~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 212 L-------------------------------KSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred H-------------------------------hhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcc
Confidence 9 566899999999999999999999999999999999999988877789
Q ss_pred CEEEEccccccCCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEecccCC
Q psy12699 894 NHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLT 973 (1269)
Q Consensus 894 ~Ivv~T~e~~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~ 973 (1269)
+++-||+||.+....+++.||||+|+|.|++|||+|+++++|+.++++|+||.+...+++++++..+|++++++.|+|..
T Consensus 261 ~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~ 340 (700)
T KOG0953|consen 261 QHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLS 340 (700)
T ss_pred cceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHhcCCc-eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhc
Q psy12699 974 ELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIESRGTE-VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1052 (1269)
Q Consensus 974 ~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~-~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~ 1052 (1269)
|+.+.+..+..++++++|||+|+|||+++..+...+++.+.. +++|||++||++|.+|+
T Consensus 341 pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA-------------------- 400 (700)
T KOG0953|consen 341 PLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQA-------------------- 400 (700)
T ss_pred cceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHH--------------------
Confidence 999999999999999999999999999999999999998766 99999999999999999
Q ss_pred cCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccc
Q psy12699 1053 MGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREID 1132 (1269)
Q Consensus 1053 ~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~ 1132 (1269)
..|++|+++++||||||+++||+|++|++||++++.||+ | +++.
T Consensus 401 -------------------------------~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kys----g-~e~~ 444 (700)
T KOG0953|consen 401 -------------------------------ALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYS----G-RETE 444 (700)
T ss_pred -------------------------------HHhCCCCCccceEEeecccccccccceeEEEEeecccCC----c-ccce
Confidence 889988899999999999999999999999999999986 4 3456
Q ss_pred cCCHhHHHHHhcccCCCCCccccccCCCCcccccccchhhhhhhhhHHHhhccCCCCcccccccceEeeCCCChHHHHHh
Q psy12699 1133 LISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNTHFEKGFVTTFKPDDLPILKNL 1212 (1269)
Q Consensus 1133 p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~qia~~~g~~~~~~~~~~v~~~~~~~~~~l~~~ 1212 (1269)
+++.++..|.+||||| +++.+..|+||+++.+|++.|+++
T Consensus 445 ~it~sqikQIAGRAGR----------------------------------------f~s~~~~G~vTtl~~eDL~~L~~~ 484 (700)
T KOG0953|consen 445 DITVSQIKQIAGRAGR----------------------------------------FGSKYPQGEVTTLHSEDLKLLKRI 484 (700)
T ss_pred eccHHHHHHHhhcccc----------------------------------------cccCCcCceEEEeeHhhHHHHHHH
Confidence 8888888777777777 345568999999999999999999
Q ss_pred hcCCCCcccccccccCccHHHHHHhhCCCCChHHHHHHHHhhcCCCCCCeeeccCCC
Q psy12699 1213 LAQSPEPITKAGLHPTADQIELYAYHLPNSTLSNLMDIFVSLSTVDDSLYFMCNIEK 1269 (1269)
Q Consensus 1213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1269)
++++++++..++++|+.+|+|+|.+|+|+.++++++++|..+|+++ +.||+||+++
T Consensus 485 l~~p~epi~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~-~~fflc~~~~ 540 (700)
T KOG0953|consen 485 LKRPVEPIKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVD-GLFFLCNLDD 540 (700)
T ss_pred HhCCchHHHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccC-CceEEecchh
Confidence 9999999999999999999999999999999999999999999999 6999999975
No 2
>KOG0331|consensus
Probab=100.00 E-value=1.8e-39 Score=376.52 Aligned_cols=280 Identities=17% Similarity=0.151 Sum_probs=214.4
Q ss_pred cccCCceEEeccCCCCchHHH----HHHHhc---------CCcEEEEcchHHHHHHHHHHHhccCC----Cceeeeccee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA----LERFLS---------AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEK 883 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~----l~~l~~---------~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~ 883 (1269)
+++|+|++..|.||||||++| +..+.+ ++++|+++||||||.|+.+.+.+++. ++.+++|+..
T Consensus 125 ~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~ 204 (519)
T KOG0331|consen 125 ALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAP 204 (519)
T ss_pred eccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCC
Confidence 466677777777777777666 222222 68899999999999999999988665 4678999988
Q ss_pred eeccCCCC--CCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhcc-CcceEEEEeecCChHH
Q psy12699 884 KFIQGEEK--PANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL-MAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 884 ~~~~~~~~--~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-~~~~~~l~~s~~~~~~ 952 (1269)
...|..+. +.+|+|+||..+. .++++.++|+||||+|+|+++....++++..+ ++..++++.+++....
T Consensus 205 ~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 205 KGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKE 284 (519)
T ss_pred ccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHH
Confidence 77665433 7899999988332 28899999999999999999999999999999 4556788988888888
Q ss_pred HHHHHHH-cCCceEEEecccC--Cc---cc----------c---ccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhc
Q psy12699 953 VKAIMMT-TNEDVEVYKYKRL--TE---LQ----------I---EDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESR 1012 (1269)
Q Consensus 953 ~~~l~~~-~~~~~~v~~~~r~--~~---l~----------~---~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~ 1012 (1269)
++.++.. ..++..+...... .. +. . ....+..+..-..+.+|||+ +++.|+++++.+...
T Consensus 285 v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~ 364 (519)
T KOG0331|consen 285 VRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK 364 (519)
T ss_pred HHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc
Confidence 8888854 3344443221110 00 00 0 00011111122455788887 889999998888665
Q ss_pred CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCC
Q psy12699 1013 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNP 1092 (1269)
Q Consensus 1013 ~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~ 1092 (1269)
+.. +..+||+.+++||+.+++.|+ +|+
T Consensus 365 ~~~---------------------------------------------------a~~iHGd~sQ~eR~~~L~~Fr--eG~ 391 (519)
T KOG0331|consen 365 GWP---------------------------------------------------AVAIHGDKSQSERDWVLKGFR--EGK 391 (519)
T ss_pred Ccc---------------------------------------------------eeeecccccHHHHHHHHHhcc--cCC
Confidence 433 677899999999999999999 999
Q ss_pred eeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcccccc
Q psy12699 1093 CKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKG 1167 (1269)
Q Consensus 1093 ~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~ 1167 (1269)
..||||||+|+||||| +|++|||||+ |.+.++|+||+|||||+|++|.++++.+++.....
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydf--------------P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a 453 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDF--------------PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLA 453 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCC--------------CCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHH
Confidence 9999999999999999 9999999999 99999999999999999999999887777644443
No 3
>KOG0330|consensus
Probab=100.00 E-value=5.5e-39 Score=347.54 Aligned_cols=280 Identities=18% Similarity=0.200 Sum_probs=200.3
Q ss_pred ccCCceEEeccCCCCchHHH----HHHHhc---CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA----LERFLS---AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGEE 890 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~----l~~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~~ 890 (1269)
+.|+|++..|.||||||.+| +++++. ...++|++||||||.||.+.++.+| .++..+.|+.....+...
T Consensus 96 L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~ 175 (476)
T KOG0330|consen 96 LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ 175 (476)
T ss_pred hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHH
Confidence 77889999999999999888 444444 4679999999999999999998764 477888898766555433
Q ss_pred --CCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 891 --KPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 891 --~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
..++|+||||..+. .+.+++++|+||||+++|++++..+..++..++++..++++++++...++++...
T Consensus 176 L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~ra 255 (476)
T KOG0330|consen 176 LSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRA 255 (476)
T ss_pred hhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhh
Confidence 28999999988443 2779999999999999999999999999999999999999999999888888744
Q ss_pred c-CCceEEEecccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHh-cCCceEEEeCCCChhhHHHHhcccCC
Q psy12699 960 T-NEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIES-RGTEVAVIYGSLPPTTKLAQASKFND 1037 (1269)
Q Consensus 960 ~-~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~r~~~~~~f~~ 1037 (1269)
. ..+..+....+..- ++.+. ..++++..+..-..+...|++ .|..+.+...+.....+...+
T Consensus 256 sl~~p~~v~~s~ky~t----------v~~lk-Q~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~----- 319 (476)
T KOG0330|consen 256 SLDNPVKVAVSSKYQT----------VDHLK-QTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALL----- 319 (476)
T ss_pred ccCCCeEEeccchhcc----------hHHhh-hheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHH-----
Confidence 2 33334433222110 00000 011111111111111122222 222222222222222222222
Q ss_pred CCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEc
Q psy12699 1038 PDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFY 1116 (1269)
Q Consensus 1038 ~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~ 1116 (1269)
|...|+....+||+|+++.|.-.++.|+ +|.++||||||+++||+|+ .||.||||
T Consensus 320 ----------------------L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk--~~~r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 320 ----------------------LRNLGFQAIPLHGQMSQSKRLGALNKFK--AGARSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred ----------------------HHhcCcceecccchhhHHHHHHHHHHHh--ccCCcEEEecchhcccCCCCCceEEEec
Confidence 2234555788899999999999999999 9999999999999999999 99999999
Q ss_pred CCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1117 SLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1117 ~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
|. |.+..+|+||+||+||+|+.|.+
T Consensus 376 Di--------------P~~skDYIHRvGRtaRaGrsG~~ 400 (476)
T KOG0330|consen 376 DI--------------PTHSKDYIHRVGRTARAGRSGKA 400 (476)
T ss_pred CC--------------CCcHHHHHHHcccccccCCCcce
Confidence 99 89999999999999995544443
No 4
>KOG0345|consensus
Probab=100.00 E-value=1e-36 Score=337.09 Aligned_cols=279 Identities=19% Similarity=0.167 Sum_probs=207.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc----------C--CcEEEEcchHHHHHHHHHHHhcc-----CCCceeeeccee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS----------A--ESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEK 883 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~----------~--~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~ 883 (1269)
++.++|+++.||||||||++|+..+++ . --++|++||||||.||.+.+..+ ..++.+++|+..
T Consensus 40 ll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~ 119 (567)
T KOG0345|consen 40 LLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRS 119 (567)
T ss_pred HhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCcc
Confidence 477899999999999999988444332 1 25799999999999999887654 346889999855
Q ss_pred eeccC---CCCCCCEEEEcccccc--------C--CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh
Q psy12699 884 KFIQG---EEKPANHVACTVEMTS--------V--NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV 950 (1269)
Q Consensus 884 ~~~~~---~~~~~~Ivv~T~e~~~--------~--l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~ 950 (1269)
..++. .+.+++|+||||+.+. . .++++++|+||||+++|+++....+.++..+|..+-+=+++++..
T Consensus 120 v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~ 199 (567)
T KOG0345|consen 120 VEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT 199 (567)
T ss_pred HHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh
Confidence 44332 2337899999987433 1 448999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHH-cCCceEEEecccC---Cc--cccccc----------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcC
Q psy12699 951 DLVKAIMMT-TNEDVEVYKYKRL---TE--LQIEDS----------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRG 1013 (1269)
Q Consensus 951 ~~~~~l~~~-~~~~~~v~~~~r~---~~--l~~~~~----------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~ 1013 (1269)
..+.++... ..+++.+...... .| +...+. .+..+.+...+.++||| +...++.....+...
T Consensus 200 ~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~- 278 (567)
T KOG0345|consen 200 QEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL- 278 (567)
T ss_pred HHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-
Confidence 888888754 3344444322221 11 111100 01112222334455555 444444444443322
Q ss_pred CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCe
Q psy12699 1014 TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPC 1093 (1269)
Q Consensus 1014 ~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~ 1093 (1269)
....++..+||.|.+.+|..+++.|+ +..-
T Consensus 279 ------------------------------------------------l~~~~i~~iHGK~~q~~R~k~~~~F~--~~~~ 308 (567)
T KOG0345|consen 279 ------------------------------------------------LKKREIFSIHGKMSQKARAKVLEAFR--KLSN 308 (567)
T ss_pred ------------------------------------------------hCCCcEEEecchhcchhHHHHHHHHH--hccC
Confidence 11234788999999999999999999 7788
Q ss_pred eEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1094 KVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1094 ~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
.+|+|||+++||||| +||+||++|+ |.+++.++||+|||||.|++|.++.+..|.++
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~Dp--------------P~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~ 366 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDP--------------PKDPSSFVHRCGRTARAGREGNAIVFLNPREE 366 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCC--------------CCChhHHHhhcchhhhccCccceEEEecccHH
Confidence 999999999999999 9999999999 88999999999999999999999888888644
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-36 Score=364.36 Aligned_cols=275 Identities=22% Similarity=0.229 Sum_probs=208.2
Q ss_pred cccCCceEEeccCCCCchHHH----HHHHh--cC--Cc-EEEEcchHHHHHHHHHHHhccC-----CCceeeecceeeec
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA----LERFL--SA--ES-GVYCGPLKMLATEVFKKSNDRG-----TPCDLITGEEKKFI 886 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~----l~~l~--~~--~~-~lil~Ptr~La~Qi~~~l~~~g-----~~v~~~~G~~~~~~ 886 (1269)
++.|+|++++|+||||||++| +..+. .. .. ++|++||||||.|+++.+..++ .++..++|+.....
T Consensus 63 ~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~ 142 (513)
T COG0513 63 ILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK 142 (513)
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH
Confidence 378899999999999999998 33333 11 12 8999999999999999987643 45678899876555
Q ss_pred cCCCC--CCCEEEEccccc-c-------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHH
Q psy12699 887 QGEEK--PANHVACTVEMT-S-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAI 956 (1269)
Q Consensus 887 ~~~~~--~~~Ivv~T~e~~-~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l 956 (1269)
+.... +++|+|+||..+ + .+.+++++|+||||+|+|+++......++..++.+.+.++++++..+.+..+
T Consensus 143 q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l 222 (513)
T COG0513 143 QIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIREL 222 (513)
T ss_pred HHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHH
Confidence 44222 599999998822 2 2789999999999999999999999999999988888888888888777777
Q ss_pred HHHc-CCceEEEecccCC-----ccccc-------cccc----cccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 957 MMTT-NEDVEVYKYKRLT-----ELQIE-------DSAV----GSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 957 ~~~~-~~~~~v~~~~r~~-----~l~~~-------~~~~----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
.... .++..+....... .+... +... ..+.....+++|||+ +++.++.++..|...|.
T Consensus 223 ~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~---- 298 (513)
T COG0513 223 ARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGF---- 298 (513)
T ss_pred HHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC----
Confidence 7553 3333322221110 00000 0000 011222333566666 66667777666665554
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1098 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa 1098 (1269)
++..+||+|++++|.++++.|+ +|+.+||||
T Consensus 299 -----------------------------------------------~~~~lhG~l~q~~R~~~l~~F~--~g~~~vLVa 329 (513)
T COG0513 299 -----------------------------------------------KVAALHGDLPQEERDRALEKFK--DGELRVLVA 329 (513)
T ss_pred -----------------------------------------------eEEEecCCCCHHHHHHHHHHHH--cCCCCEEEE
Confidence 4778899999999999999999 999999999
Q ss_pred cCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1099 TDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1099 Tdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||+++||||| +|++|||||+ |.+.++|+||+|||||+|++|.++.+..|.
T Consensus 330 TDvaaRGiDi~~v~~VinyD~--------------p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 330 TDVAARGLDIPDVSHVINYDL--------------PLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred echhhccCCccccceeEEccC--------------CCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999 9999999999 899999999999999999999998888774
No 6
>KOG0340|consensus
Probab=100.00 E-value=3.7e-35 Score=314.33 Aligned_cols=267 Identities=18% Similarity=0.167 Sum_probs=197.0
Q ss_pred cccCCceEEeccCCCCchHHH----HHHHhc---CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA----LERFLS---AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~----l~~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~ 889 (1269)
+++|+|++.+|.||||||.++ +..+.+ +--++++.||||||.|+.+++...| .++.+++|+.....+..
T Consensus 41 ILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~ 120 (442)
T KOG0340|consen 41 ILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA 120 (442)
T ss_pred HhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh
Confidence 488999999999999999988 344444 4457899999999999999997655 47889999877655543
Q ss_pred C--CCCCEEEEcccccc------------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHH
Q psy12699 890 E--KPANHVACTVEMTS------------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 890 ~--~~~~Ivv~T~e~~~------------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~ 955 (1269)
. ..+|++++||+.+. .+++++++|+||||++++..+...++.+...+|..+++++.+++..+.++.
T Consensus 121 ~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~q 200 (442)
T KOG0340|consen 121 ILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQ 200 (442)
T ss_pred hcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHH
Confidence 3 38999999988443 178999999999999999888888888888999898999999988888887
Q ss_pred HHHHcCC---ceEEEeccc-CCc--cc-------------cccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCc
Q psy12699 956 IMMTTNE---DVEVYKYKR-LTE--LQ-------------IEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTE 1015 (1269)
Q Consensus 956 l~~~~~~---~~~v~~~~r-~~~--l~-------------~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~ 1015 (1269)
+...... .+++....- .++ +. |....+...++-+.+.+++|. +..+|+.++..|+..
T Consensus 201 l~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--- 277 (442)
T KOG0340|consen 201 LFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--- 277 (442)
T ss_pred hhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---
Confidence 7633111 122211110 000 00 000011111111233444444 445555555554433
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeE
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1095 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~V 1095 (1269)
++.+..+||.|++++|...+.+|+ .+..+|
T Consensus 278 ------------------------------------------------e~r~~~lHs~m~Q~eR~~aLsrFr--s~~~~i 307 (442)
T KOG0340|consen 278 ------------------------------------------------EVRVVSLHSQMPQKERLAALSRFR--SNAARI 307 (442)
T ss_pred ------------------------------------------------ceeeeehhhcchHHHHHHHHHHHh--hcCccE
Confidence 334778899999999999999999 999999
Q ss_pred EEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccc
Q psy12699 1096 MVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFE 1154 (1269)
Q Consensus 1096 LVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~ 1154 (1269)
|||||+++||+|| .|+.|||+|. |.++.+|+||+||++|+|+.|.
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~di--------------Pr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDI--------------PRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCC--------------CCCHHHHHHhhcchhcccCCcc
Confidence 9999999999999 9999999999 8899999999999999555443
No 7
>KOG0333|consensus
Probab=100.00 E-value=6.2e-35 Score=326.02 Aligned_cols=294 Identities=20% Similarity=0.171 Sum_probs=215.4
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS 868 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l 868 (1269)
-.+++++++.+++||||||.+++-++|... ...|. ...+.....++.+++++||||||+|+.++-
T Consensus 278 l~lQ~rD~igvaETgsGktaaf~ipLl~~I----------sslP~-----~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 278 LGLQNRDPIGVAETGSGKTAAFLIPLLIWI----------SSLPP-----MARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred chhccCCeeeEEeccCCccccchhhHHHHH----------HcCCC-----cchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 335677778888888888877666664432 11111 000112234899999999999999999887
Q ss_pred hccC----CCceeeecceeeeccC--CCCCCCEEEEccccc-c-------CCCCeeEEEEecccccccCCchhHHHHHHh
Q psy12699 869 NDRG----TPCDLITGEEKKFIQG--EEKPANHVACTVEMT-S-------VNIPYEVAVIDEIQMMRDITRGWAWTRALL 934 (1269)
Q Consensus 869 ~~~g----~~v~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~-~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll 934 (1269)
.+++ .++..+.|+.+..++. ...+++|+|+||..+ + .+.++.++|+||||+|.|+++....+++|.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~ 422 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILE 422 (673)
T ss_pred HHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHH
Confidence 7654 4677788998877773 445899999998833 2 288999999999999999999999999986
Q ss_pred ccCc-----------------------c--eEEEEeecCChHHHHHHHHH-cCCceEEE--ecccCCccc----cc----
Q psy12699 935 GLMA-----------------------K--EIHVCGEAGAVDLVKAIMMT-TNEDVEVY--KYKRLTELQ----IE---- 978 (1269)
Q Consensus 935 ~l~~-----------------------~--~~~l~~s~~~~~~~~~l~~~-~~~~~~v~--~~~r~~~l~----~~---- 978 (1269)
.++. + .+.+|++++..+.++.++.. ..+++.+. ...++++.. +.
T Consensus 423 ~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed 502 (673)
T KOG0333|consen 423 QMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSED 502 (673)
T ss_pred hCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecch
Confidence 6653 1 46888999999988888855 33444432 222222211 00
Q ss_pred ---cccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccC
Q psy12699 979 ---DSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1054 (1269)
Q Consensus 979 ---~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~ 1054 (1269)
....+.+.+.-...+|||. .++.|+.+++.|++.+.+
T Consensus 503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~--------------------------------------- 543 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYK--------------------------------------- 543 (673)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccce---------------------------------------
Confidence 0111112222223455555 777788888877766554
Q ss_pred ccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCcccccc
Q psy12699 1055 LNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDL 1133 (1269)
Q Consensus 1055 ~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p 1133 (1269)
+..+||+-++++|+..++.|+ +|..+||||||+++||||| ||.+|||||+ +
T Consensus 544 ------------~~tlHg~k~qeQRe~aL~~fr--~~t~dIlVaTDvAgRGIDIpnVSlVinydm--------------a 595 (673)
T KOG0333|consen 544 ------------VTTLHGGKSQEQRENALADFR--EGTGDILVATDVAGRGIDIPNVSLVINYDM--------------A 595 (673)
T ss_pred ------------EEEeeCCccHHHHHHHHHHHH--hcCCCEEEEecccccCCCCCccceeeecch--------------h
Confidence 677888899999999999999 9999999999999999999 9999999999 6
Q ss_pred CCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1134 ISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1134 ~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
.+.++|.||+|||||+|+.|.++.+..|+.+
T Consensus 596 ksieDYtHRIGRTgRAGk~GtaiSflt~~dt 626 (673)
T KOG0333|consen 596 KSIEDYTHRIGRTGRAGKSGTAISFLTPADT 626 (673)
T ss_pred hhHHHHHHHhccccccccCceeEEEeccchh
Confidence 7899999999999999999999888777743
No 8
>KOG0338|consensus
Probab=100.00 E-value=3.3e-35 Score=326.70 Aligned_cols=290 Identities=20% Similarity=0.161 Sum_probs=201.7
Q ss_pred cCCceEEeccCCCCchHHH----HHHHhc------CCcEEEEcchHHHHHHHHHHHhc---c-CCCceeeecceeeeccC
Q psy12699 823 CGPLKIHAGPTNSGKTYHA----LERFLS------AESGVYCGPLKMLATEVFKKSND---R-GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~----l~~l~~------~~~~lil~Ptr~La~Qi~~~l~~---~-g~~v~~~~G~~~~~~~~ 888 (1269)
.|+|++.+|.||||||.+| +.+++- ..|+||++||||||.|++...++ | .+.|++..|+-....|.
T Consensus 217 lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE 296 (691)
T KOG0338|consen 217 LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQE 296 (691)
T ss_pred hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHH
Confidence 4566666666666666555 222222 45899999999999999976654 3 35889999987665554
Q ss_pred --CCCCCCEEEEccccc-c--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH
Q psy12699 889 --EEKPANHVACTVEMT-S--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e~~-~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
....+||+|+||..+ + .++++.++|+||||+|++.++...+..++..++..++.+++++++.+.++++.
T Consensus 297 ~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~ 376 (691)
T KOG0338|consen 297 AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLA 376 (691)
T ss_pred HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHH
Confidence 233899999999822 1 28899999999999999999999999999888889999999999999999998
Q ss_pred HH-cCCceEEEec-ccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHhc-CCceEEEeCCCChhhHHHHhcc
Q psy12699 958 MT-TNEDVEVYKY-KRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIESR-GTEVAVIYGSLPPTTKLAQASK 1034 (1269)
Q Consensus 958 ~~-~~~~~~v~~~-~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~r~~~~~~ 1034 (1269)
.. ...++.+-.. ...+....... +-++.++.- ..+ -..++..+.+. ..++.++.++..+..|...+..
T Consensus 377 slSL~kPvrifvd~~~~~a~~LtQE----FiRIR~~re----~dR-ea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 377 SLSLNKPVRIFVDPNKDTAPKLTQE----FIRIRPKRE----GDR-EAMLASLITRTFQDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred HhhcCCCeEEEeCCccccchhhhHH----Hheeccccc----ccc-HHHHHHHHHHhcccceEEEEehHHHHHHHHHHHH
Confidence 54 4555553221 11111111110 111111000 000 01111111111 2222333344444444444421
Q ss_pred cCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEE
Q psy12699 1035 FNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRV 1113 (1269)
Q Consensus 1035 f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~V 1113 (1269)
-.|++++-+||+|++++|.+.+++|+ +++++||||||+++||+|| +|..|
T Consensus 448 ---------------------------Llgl~agElHGsLtQ~QRlesL~kFk--~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 448 ---------------------------LLGLKAGELHGSLTQEQRLESLEKFK--KEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred ---------------------------HhhchhhhhcccccHHHHHHHHHHHH--hccCCEEEEechhhccCCccceeEE
Confidence 23556788899999999999999999 9999999999999999999 99999
Q ss_pred EEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1114 IFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1114 I~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
|||.+ |.+.+.|+||+|||+|+|+.|+++++......
T Consensus 499 INy~m--------------P~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 499 INYAM--------------PKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred EeccC--------------chhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 99999 89999999999999999999999777665533
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.6e-34 Score=353.21 Aligned_cols=278 Identities=17% Similarity=0.120 Sum_probs=198.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h--------cCCcEEEEcchHHHHHHHHHHHhccCC----Cceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L--------SAESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~--------~~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~ 884 (1269)
+++|+|++++||||||||++|+..+ . .++.+||++||||||.|+++.+++++. ++..++|+...
T Consensus 164 ~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~ 243 (545)
T PTZ00110 164 ALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPK 243 (545)
T ss_pred HhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCH
Confidence 3678888888888888888873221 1 156799999999999999999987653 55667777544
Q ss_pred eccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 885 FIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 885 ~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
..+. ...+++|+|+||+.+. .+.+++++|+||||+++|.++...+..++..+....+.++.+++....++
T Consensus 244 ~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~ 323 (545)
T PTZ00110 244 RGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQ 323 (545)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHH
Confidence 3322 1226899999997432 27789999999999999988888888888877777777777777666666
Q ss_pred HHHHHcC--CceEEEecccC-C---ccc--c--c------cccccccCCc--CCCCEEEEe-cHHhHHHHHHHHHhcCCc
Q psy12699 955 AIMMTTN--EDVEVYKYKRL-T---ELQ--I--E------DSAVGSLDNI--QPGDCIVCF-SKNDVYTVSRGIESRGTE 1015 (1269)
Q Consensus 955 ~l~~~~~--~~~~v~~~~r~-~---~l~--~--~------~~~~~~l~~~--~~g~~iv~~-s~~~~~~l~~~L~~~~~~ 1015 (1269)
.+..... .++.+...... . .+. + . ......+..+ ..+.++||+ +++.++.+++.|+..
T Consensus 324 ~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--- 400 (545)
T PTZ00110 324 SLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD--- 400 (545)
T ss_pred HHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc---
Confidence 6654322 22222211000 0 000 0 0 0000001111 223455555 555566665555433
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeE
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1095 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~V 1095 (1269)
|+++..+||++++++|+.+++.|+ +|+.+|
T Consensus 401 ------------------------------------------------g~~~~~ihg~~~~~eR~~il~~F~--~G~~~I 430 (545)
T PTZ00110 401 ------------------------------------------------GWPALCIHGDKKQEERTWVLNEFK--TGKSPI 430 (545)
T ss_pred ------------------------------------------------CCcEEEEECCCcHHHHHHHHHHHh--cCCCcE
Confidence 344778899999999999999999 999999
Q ss_pred EEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcccc
Q psy12699 1096 MVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNE 1165 (1269)
Q Consensus 1096 LVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~ 1165 (1269)
|||||+++||||+ +|++||++|+ |.+.++|+||+|||||+|++|.++++..|+...
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~--------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDF--------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCC--------------CCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 9999999999999 9999999998 889999999999999999999998877776443
No 10
>KOG0348|consensus
Probab=100.00 E-value=2e-34 Score=322.32 Aligned_cols=325 Identities=18% Similarity=0.134 Sum_probs=203.2
Q ss_pred ccCCceEEeccCCCCchHHHHHHH----hc---------CCcEEEEcchHHHHHHHHHHHhccCCC-----ceeeeccee
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERF----LS---------AESGVYCGPLKMLATEVFKKSNDRGTP-----CDLITGEEK 883 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l----~~---------~~~~lil~Ptr~La~Qi~~~l~~~g~~-----v~~~~G~~~ 883 (1269)
++|+|++|.++||||||++|+..+ .. |.-++|++||||||.|+|+.++++-.+ .+.+.|+++
T Consensus 172 L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEk 251 (708)
T KOG0348|consen 172 LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEK 251 (708)
T ss_pred hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccc
Confidence 678999999999999999983322 21 677999999999999999999875432 244556665
Q ss_pred eeccCC--CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccC-------------cc
Q psy12699 884 KFIQGE--EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM-------------AK 939 (1269)
Q Consensus 884 ~~~~~~--~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~-------------~~ 939 (1269)
+..... ..+.+|+|+||+.+. .+.+++++|+||+|+++|.+++.+++.++..+. .+
T Consensus 252 kKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q 331 (708)
T KOG0348|consen 252 KKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQ 331 (708)
T ss_pred cccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHH
Confidence 544332 238999999998332 177899999999999999999999998875541 12
Q ss_pred eEEEEeecCChHHHHHHHHHc-CCceEEEecccCCcccccccccc---------ccCC--cCCC---CEEEEecHHhHHH
Q psy12699 940 EIHVCGEAGAVDLVKAIMMTT-NEDVEVYKYKRLTELQIEDSAVG---------SLDN--IQPG---DCIVCFSKNDVYT 1004 (1269)
Q Consensus 940 ~~~l~~s~~~~~~~~~l~~~~-~~~~~v~~~~r~~~l~~~~~~~~---------~l~~--~~~g---~~iv~~s~~~~~~ 1004 (1269)
.+.++.+++..+-+..+.+.. .+++.+.-.+....+...++.+. .++. ++.. .++|...+-....
T Consensus 332 ~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~ 411 (708)
T KOG0348|consen 332 LQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVA 411 (708)
T ss_pred HHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHH
Confidence 345556677777788888654 33333431111111110000000 0100 0100 1222224444444
Q ss_pred HHHHHHhc-----CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhH
Q psy12699 1005 VSRGIESR-----GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTK 1079 (1269)
Q Consensus 1005 l~~~L~~~-----~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR 1079 (1269)
++..|.+. ..+..+++..-...+--..+ |........+-...+....| ... +..+..+.-+||+|.+++|
T Consensus 412 Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~l--f~~~l~~~~e~~s~~~~s~g--~~~-l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 412 LAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSL--FSEALLSHLEGSSGAPDSEG--LPP-LFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred HHHHHHHHhhhhhhceeEEEEechhHHHHHHHH--HHhhhhcccccccCCcccCC--Chh-hhhcceEEEecCchhHHHH
Confidence 44443321 11222222221111111111 00000000000000000000 000 1122347888999999999
Q ss_pred HHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccC
Q psy12699 1080 LAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAG 1158 (1269)
Q Consensus 1080 ~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~ 1158 (1269)
..+++.|+ ..+..||+|||+++||+|+ +|++||.||. |.+.++|+||+|||+|+|.+|.++++
T Consensus 487 ts~f~~Fs--~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~--------------P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 487 TSVFQEFS--HSRRAVLLCTDVAARGLDLPHVGLVVQYDP--------------PFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred HHHHHhhc--cccceEEEehhhhhccCCCCCcCeEEEeCC--------------CCCHHHHHHHhhhhhhccCCCceEEE
Confidence 99999999 7777899999999999999 9999999998 99999999999999999999999999
Q ss_pred CCCcccccc
Q psy12699 1159 SHPALNEKG 1167 (1269)
Q Consensus 1159 ~~p~~~~~~ 1167 (1269)
..|.+.++-
T Consensus 551 L~P~Eaey~ 559 (708)
T KOG0348|consen 551 LLPSEAEYV 559 (708)
T ss_pred ecccHHHHH
Confidence 999877654
No 11
>KOG0328|consensus
Probab=100.00 E-value=2.4e-34 Score=298.47 Aligned_cols=272 Identities=16% Similarity=0.162 Sum_probs=202.9
Q ss_pred ccccCCceEEeccCCCCchHHH----HHHH---hcCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA----LERF---LSAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQG 888 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~----l~~l---~~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~ 888 (1269)
.++.|+|++++|+.|+|||..+ ++.+ .+..+++++.||||||.|+.+.+..+| ++|-...|+....++.
T Consensus 60 ~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedi 139 (400)
T KOG0328|consen 60 QILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDI 139 (400)
T ss_pred hhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhh
Confidence 3588999999999999999776 2222 225789999999999999999998765 4666677776543332
Q ss_pred --CCCCCCEEEEcccc-cc-------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH-
Q psy12699 889 --EEKPANHVACTVEM-TS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM- 957 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e~-~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~- 957 (1269)
...+.+++.+||.. ++ ..+.++++|+||||+|++.+++...-++...+++..+.+..+++....+.++.
T Consensus 140 kkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~ 219 (400)
T KOG0328|consen 140 KKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTE 219 (400)
T ss_pred hhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHH
Confidence 22378999999882 22 25689999999999999999998999999999876555555555544444443
Q ss_pred HHcCCceEEEecccCCccc-----c-----cc---ccc-cccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCC
Q psy12699 958 MTTNEDVEVYKYKRLTELQ-----I-----ED---SAV-GSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGS 1022 (1269)
Q Consensus 958 ~~~~~~~~v~~~~r~~~l~-----~-----~~---~~~-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~ 1022 (1269)
....+++.+-......+++ + ++ ..+ ...+.+.-.++++|+ +++.++.+.+.+++.++.
T Consensus 220 kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nft------- 292 (400)
T KOG0328|consen 220 KFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT------- 292 (400)
T ss_pred HhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCce-------
Confidence 3455555532211111111 0 00 000 112223445777777 899999999988876654
Q ss_pred CChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcc
Q psy12699 1023 LPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAI 1102 (1269)
Q Consensus 1023 l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~ 1102 (1269)
|...||+|+++||++++..|| .|+.+||++||+.
T Consensus 293 --------------------------------------------VssmHGDm~qkERd~im~dFR--sg~SrvLitTDVw 326 (400)
T KOG0328|consen 293 --------------------------------------------VSSMHGDMEQKERDKIMNDFR--SGKSRVLITTDVW 326 (400)
T ss_pred --------------------------------------------eeeccCCcchhHHHHHHHHhh--cCCceEEEEechh
Confidence 666799999999999999999 9999999999999
Q ss_pred cccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccC
Q psy12699 1103 GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAG 1158 (1269)
Q Consensus 1103 ~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~ 1158 (1269)
+||+|+ .|..|||||+ |...+.|+||+||.||+|++|.++.+
T Consensus 327 aRGiDv~qVslviNYDL--------------P~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDL--------------PNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred hccCCcceeEEEEecCC--------------CccHHHHhhhhccccccCCcceEEEE
Confidence 999999 9999999999 88899999999999999988876544
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.9e-34 Score=346.81 Aligned_cols=276 Identities=22% Similarity=0.186 Sum_probs=206.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~ 888 (1269)
+++|+|++++||||||||++|+..++. ..+++|++||||||.|++++++.+ +.++..++|+.....+.
T Consensus 38 ~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~ 117 (460)
T PRK11776 38 ILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQI 117 (460)
T ss_pred HhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHH
Confidence 367899999999999999888433332 347999999999999999988764 34677788876543332
Q ss_pred --CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 --EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
...+++|+|+||+.+. .+.+++++|+||||++.+.++...+..++..++...+.++.+++..+.+..+..
T Consensus 118 ~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~ 197 (460)
T PRK11776 118 DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQ 197 (460)
T ss_pred HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHH
Confidence 1237899999998443 267899999999999999999888988888888777777777777776766665
Q ss_pred Hc-CCceEEEecccCC--ccccc---c-------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCC
Q psy12699 959 TT-NEDVEVYKYKRLT--ELQIE---D-------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLP 1024 (1269)
Q Consensus 959 ~~-~~~~~v~~~~r~~--~l~~~---~-------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~ 1024 (1269)
.. ..+..+....... .+... . .....+....++.++||+ +++.++.+++.|.+.+.
T Consensus 198 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~---------- 267 (460)
T PRK11776 198 RFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGF---------- 267 (460)
T ss_pred HhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCC----------
Confidence 42 3333332211110 00000 0 000111222344566666 77777777777765443
Q ss_pred hhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccc
Q psy12699 1025 PTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1104 (1269)
Q Consensus 1025 ~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~ 1104 (1269)
.+..+||+|++++|+.+++.|+ +|+.+||||||+++|
T Consensus 268 -----------------------------------------~v~~~hg~~~~~eR~~~l~~F~--~g~~~vLVaTdv~~r 304 (460)
T PRK11776 268 -----------------------------------------SALALHGDLEQRDRDQVLVRFA--NRSCSVLVATDVAAR 304 (460)
T ss_pred -----------------------------------------cEEEEeCCCCHHHHHHHHHHHH--cCCCcEEEEeccccc
Confidence 3788999999999999999999 999999999999999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPAL 1163 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~ 1163 (1269)
|||+ ++++||++|+ |.+.++|+||+|||||+|++|.++.+..|.+
T Consensus 305 GiDi~~v~~VI~~d~--------------p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 305 GLDIKALEAVINYEL--------------ARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred ccchhcCCeEEEecC--------------CCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 9999 9999999998 8899999999999999999999987777763
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.4e-34 Score=343.38 Aligned_cols=275 Identities=17% Similarity=0.165 Sum_probs=194.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh--------------cCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecce
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL--------------SAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEE 882 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~--------------~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~ 882 (1269)
+++|+|++++||||||||++|+..++ .+++++|++||||||.|+++.+.. .+.++..++|+.
T Consensus 42 il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~ 121 (423)
T PRK04837 42 TLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGD 121 (423)
T ss_pred HhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 47789999999999999988843332 136799999999999999987765 356777788875
Q ss_pred eeeccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--ceEEEEeecCCh
Q psy12699 883 KKFIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--KEIHVCGEAGAV 950 (1269)
Q Consensus 883 ~~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--~~~~l~~s~~~~ 950 (1269)
....+. ...+++|+|+||+.+. .+.+++++|+||||++.|.++......++..++. ..+.++.+++..
T Consensus 122 ~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 122 GYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred CHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 433222 1236799999998442 2779999999999999998888888777777654 344455666666
Q ss_pred HHHHHHHHH-cCCceEEEecccCC---ccc----ccc--c----cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCc
Q psy12699 951 DLVKAIMMT-TNEDVEVYKYKRLT---ELQ----IED--S----AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTE 1015 (1269)
Q Consensus 951 ~~~~~l~~~-~~~~~~v~~~~r~~---~l~----~~~--~----~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~ 1015 (1269)
.....+... ...+..+....... .+. +.. . ....+.....+.++||+ +++.++.+++.|.+.
T Consensus 202 ~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--- 278 (423)
T PRK04837 202 YRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--- 278 (423)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---
Confidence 555555432 33332222111000 000 000 0 00001111223445554 555555555555433
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeE
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1095 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~V 1095 (1269)
|+++..+||+|++++|.++++.|+ +|+++|
T Consensus 279 ------------------------------------------------g~~v~~lhg~~~~~~R~~~l~~F~--~g~~~v 308 (423)
T PRK04837 279 ------------------------------------------------GHRVGLLTGDVAQKKRLRILEEFT--RGDLDI 308 (423)
T ss_pred ------------------------------------------------CCcEEEecCCCChhHHHHHHHHHH--cCCCcE
Confidence 445888999999999999999999 999999
Q ss_pred EEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1096 MVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1096 LVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|||||+++||||+ ++++||+||+ |.+.++|+||+|||||+|++|.++++..|+
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~--------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDL--------------PDDCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCC--------------CCchhheEeccccccCCCCCeeEEEEeCHH
Confidence 9999999999999 9999999999 889999999999999999999998887665
No 14
>KOG0342|consensus
Probab=100.00 E-value=5.6e-34 Score=318.14 Aligned_cols=291 Identities=16% Similarity=0.122 Sum_probs=214.2
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----Hhc-------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeeccee
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FLS-------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEK 883 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~ 883 (1269)
-++.|+|+++.|.||||||++++.. +.+ +..++|++||||||.|++.+++++ +..++++.|+..
T Consensus 115 pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~ 194 (543)
T KOG0342|consen 115 PLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN 194 (543)
T ss_pred ccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc
Confidence 3688889999999999999888322 222 456899999999999999887652 557888999876
Q ss_pred eeccC--CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHH
Q psy12699 884 KFIQG--EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 884 ~~~~~--~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~ 952 (1269)
..... ...+++|+|+||..+. ...+++++|+||||+++|.++......++..++..++.++++++..+.
T Consensus 195 ~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 195 FSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSK 274 (543)
T ss_pred chHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHH
Confidence 54332 2228999999998432 256779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-C-CceEEEecccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHhcC--CceEEEeCCCChhhH
Q psy12699 953 VKAIMMTT-N-EDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIESRG--TEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 953 ~~~l~~~~-~-~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~--~~~~~i~g~l~~~~r 1028 (1269)
+++++... . ++..+....... ....+.++. .++|+-+.+....+...|+++- .++.+.+.+.....-
T Consensus 275 V~~l~~~~L~~d~~~v~~~d~~~--------~~The~l~Q-gyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 275 VKDLARGALKRDPVFVNVDDGGE--------RETHERLEQ-GYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred HHHHHHHhhcCCceEeecCCCCC--------cchhhcccc-eEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 99998542 2 222232211110 011222222 2444444444555666665542 333333333222222
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
...+ |....++|..+||++++..|..+...|+ +.+.-||||||+++||+|+
T Consensus 346 ~~~l---------------------------L~~~dlpv~eiHgk~~Q~kRT~~~~~F~--kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 346 HAEL---------------------------LNYIDLPVLEIHGKQKQNKRTSTFFEFC--KAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHH---------------------------HhhcCCchhhhhcCCcccccchHHHHHh--hcccceEEecchhhccCCC
Confidence 2222 1122456888899999999999999999 8899999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|++||++|+ |.++++|+||+|||||.|++|.+++...|+
T Consensus 397 P~V~~VvQ~~~--------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 397 PDVDWVVQYDP--------------PSDPEQYIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred CCceEEEEeCC--------------CCCHHHHHHHhccccccCCCceEEEEeChh
Confidence 9999999998 899999999999999999999998888777
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.7e-33 Score=342.21 Aligned_cols=286 Identities=17% Similarity=0.146 Sum_probs=188.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh--------------cCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecce
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL--------------SAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEE 882 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~--------------~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~ 882 (1269)
+++|+|++++||||||||++|+..++ .+++++|++||||||.|+++.++.++ .++..++|+.
T Consensus 155 il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~ 234 (518)
T PLN00206 155 ALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGD 234 (518)
T ss_pred HhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCc
Confidence 36788999999999999988843322 25689999999999999998887654 3455566665
Q ss_pred eeeccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHH
Q psy12699 883 KKFIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 883 ~~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~ 952 (1269)
....+. ...+++|+|+||+.+. .+++++++|+||||++.|.++......++..++..+ .++.+++..+.
T Consensus 235 ~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q-~l~~SATl~~~ 313 (518)
T PLN00206 235 AMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQ-VLLFSATVSPE 313 (518)
T ss_pred chHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCc-EEEEEeeCCHH
Confidence 433322 1236899999998432 278999999999999999887777777776665444 44555566556
Q ss_pred HHHHHHHcCCceE-EEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcC---CceEEEeCCCChhh
Q psy12699 953 VKAIMMTTNEDVE-VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRG---TEVAVIYGSLPPTT 1027 (1269)
Q Consensus 953 ~~~l~~~~~~~~~-v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~---~~~~~i~g~l~~~~ 1027 (1269)
++.+......... +.......+.. .+ .+..++. ..+....+.+.+.... .++.+..++....+
T Consensus 314 v~~l~~~~~~~~~~i~~~~~~~~~~-------~v-----~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 314 VEKFASSLAKDIILISIGNPNRPNK-------AV-----KQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGAD 381 (518)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCc-------ce-----eEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHH
Confidence 6666654333222 22111100000 00 0111111 2222223333332211 11212112211111
Q ss_pred HHHHhcccCCCCCCccchhhhhhhccCccccccc-cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccc
Q psy12699 1028 KLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIE-SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGL 1106 (1269)
Q Consensus 1028 r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~-~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GI 1106 (1269)
..... +. ..|+.+..+||++++++|+++++.|+ +|+.+||||||+++|||
T Consensus 382 ~l~~~---------------------------L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr--~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 382 LLANA---------------------------ITVVTGLKALSIHGEKSMKERREVMKSFL--VGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHH---------------------------HhhccCcceEEeeCCCCHHHHHHHHHHHH--CCCCCEEEEecHhhccC
Confidence 11111 00 12455888999999999999999999 99999999999999999
Q ss_pred cc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1107 NL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1107 Di-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|+ +|++||+||+ |.+.++|+||+|||||.|++|.++++..++
T Consensus 433 Dip~v~~VI~~d~--------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 433 DLLRVRQVIIFDM--------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred CcccCCEEEEeCC--------------CCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 99 9999999998 889999999999999999999997776554
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.7e-33 Score=337.37 Aligned_cols=275 Identities=20% Similarity=0.159 Sum_probs=196.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------------CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeeccee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------------AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEK 883 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------------~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~ 883 (1269)
+++|+|++++||||||||++|+..++. ..++||++||||||.|++++++++ +.++..++|+..
T Consensus 35 il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~ 114 (456)
T PRK10590 35 VLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVS 114 (456)
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcC
Confidence 477899999999999999988433321 237999999999999999998764 345556777754
Q ss_pred eeccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHH
Q psy12699 884 KFIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLV 953 (1269)
Q Consensus 884 ~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~ 953 (1269)
...+. ....++|+|+||+.+. .+++++++|+||||++++.++...+..++..++...+.++.+++..+.+
T Consensus 115 ~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~ 194 (456)
T PRK10590 115 INPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194 (456)
T ss_pred HHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHH
Confidence 43321 1236899999998442 2789999999999999998888888888887877766777777776666
Q ss_pred HHHHHH-cCCceEEEecccCCccccccc------------cc-cccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 954 KAIMMT-TNEDVEVYKYKRLTELQIEDS------------AV-GSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 954 ~~l~~~-~~~~~~v~~~~r~~~l~~~~~------------~~-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
+.+... ..++..+....+......... .+ ..+.......++||+ ++.+++.+++.|.+.
T Consensus 195 ~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~------ 268 (456)
T PRK10590 195 KALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD------ 268 (456)
T ss_pred HHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC------
Confidence 666544 233333322111110000000 00 001111122445444 555555555555433
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1098 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa 1098 (1269)
|+.+..+||+|++++|.++++.|+ +|+++||||
T Consensus 269 ---------------------------------------------g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~iLVa 301 (456)
T PRK10590 269 ---------------------------------------------GIRSAAIHGNKSQGARTRALADFK--SGDIRVLVA 301 (456)
T ss_pred ---------------------------------------------CCCEEEEECCCCHHHHHHHHHHHH--cCCCcEEEE
Confidence 344788999999999999999999 999999999
Q ss_pred cCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1099 TDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1099 Tdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||++++|||+ +|++||+|++ |.+.++|+||+|||||+|++|.++....++
T Consensus 302 Tdv~~rGiDip~v~~VI~~~~--------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 302 TDIAARGLDIEELPHVVNYEL--------------PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred ccHHhcCCCcccCCEEEEeCC--------------CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 9999999999 9999999998 889999999999999999999886665544
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.7e-33 Score=343.07 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=194.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc--------------CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecce
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS--------------AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEE 882 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~--------------~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~ 882 (1269)
+++|+|++++||||||||++|+..++. .+++||++||||||.|+++++.+++ .++..++|+.
T Consensus 43 ~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~ 122 (572)
T PRK04537 43 ALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGV 122 (572)
T ss_pred HhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 478899999999999999888333221 3689999999999999999987654 4677788876
Q ss_pred eeeccC--CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--ceEEEEeecCC
Q psy12699 883 KKFIQG--EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--KEIHVCGEAGA 949 (1269)
Q Consensus 883 ~~~~~~--~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--~~~~l~~s~~~ 949 (1269)
....+. ...+++|+|+||+.+. .+.+++++||||||++.|.++......++..++. ....++.+++.
T Consensus 123 ~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl 202 (572)
T PRK04537 123 DYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATL 202 (572)
T ss_pred CHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCc
Confidence 543332 1225799999987432 2667899999999999988887777777776654 34455555555
Q ss_pred hHHHHHHHHH-cCCceEEEe-cccCCcccccc------------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCC
Q psy12699 950 VDLVKAIMMT-TNEDVEVYK-YKRLTELQIED------------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGT 1014 (1269)
Q Consensus 950 ~~~~~~l~~~-~~~~~~v~~-~~r~~~l~~~~------------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~ 1014 (1269)
.+.+..+... ...+..+.. ........... .....+.......++||+ +++.++.+++.|.+.
T Consensus 203 ~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~-- 280 (572)
T PRK04537 203 SHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH-- 280 (572)
T ss_pred cHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--
Confidence 5544444422 222222211 11100000000 000011111233455555 666666666665443
Q ss_pred ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCee
Q psy12699 1015 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK 1094 (1269)
Q Consensus 1015 ~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~ 1094 (1269)
|+.+..+||+|++++|+++++.|+ +|+++
T Consensus 281 -------------------------------------------------g~~v~~lhg~l~~~eR~~il~~Fr--~G~~~ 309 (572)
T PRK04537 281 -------------------------------------------------GYRVGVLSGDVPQKKRESLLNRFQ--KGQLE 309 (572)
T ss_pred -------------------------------------------------CCCEEEEeCCCCHHHHHHHHHHHH--cCCCe
Confidence 334888999999999999999999 99999
Q ss_pred EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1095 VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1095 VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||||||++++|||+ +|++|||||. |.+.++|+||+|||||.|++|.++++..+.
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~--------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDL--------------PFDAEDYVHRIGRTARLGEEGDAISFACER 364 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCC--------------CCCHHHHhhhhcccccCCCCceEEEEecHH
Confidence 99999999999999 9999999998 889999999999999999999997766554
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.6e-33 Score=343.91 Aligned_cols=274 Identities=19% Similarity=0.156 Sum_probs=200.3
Q ss_pred ccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC-
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG- 888 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~- 888 (1269)
++|+|++++||||||||++|...++ ..+++||++||||||.|+++.++++ +.++..++|+.....+.
T Consensus 41 l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~ 120 (629)
T PRK11634 41 LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120 (629)
T ss_pred HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH
Confidence 6789999999999999998833322 2568999999999999999888654 45666677775543222
Q ss_pred -CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 889 -EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
....++|+|+||+.+. .+++++++|+||||++++.++...+..++..++.....++.+++..+.+..+...
T Consensus 121 ~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~ 200 (629)
T PRK11634 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRR 200 (629)
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHH
Confidence 2236899999988432 2789999999999999998888888888888887777777777777666666544
Q ss_pred c-CCceEEEecccC--Cc-cccc----------cccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCC
Q psy12699 960 T-NEDVEVYKYKRL--TE-LQIE----------DSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLP 1024 (1269)
Q Consensus 960 ~-~~~~~v~~~~r~--~~-l~~~----------~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~ 1024 (1269)
. .++..+...... .+ +... ......+.......++||+ ++..+..+++.|.+.+
T Consensus 201 ~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g----------- 269 (629)
T PRK11634 201 FMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG----------- 269 (629)
T ss_pred HcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC-----------
Confidence 2 222222211110 00 0000 0000011111223455555 6666777766665543
Q ss_pred hhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccc
Q psy12699 1025 PTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1104 (1269)
Q Consensus 1025 ~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~ 1104 (1269)
+.+..+||+|++++|+++++.|+ +|+++||||||++++
T Consensus 270 ----------------------------------------~~~~~lhgd~~q~~R~~il~~Fr--~G~~~ILVATdv~ar 307 (629)
T PRK11634 270 ----------------------------------------YNSAALNGDMNQALREQTLERLK--DGRLDILIATDVAAR 307 (629)
T ss_pred ----------------------------------------CCEEEeeCCCCHHHHHHHHHHHh--CCCCCEEEEcchHhc
Confidence 33778899999999999999999 999999999999999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|||+ +|++|||||. |.+.++|+||+|||||+|+.|.++++..+.
T Consensus 308 GIDip~V~~VI~~d~--------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 308 GLDVERISLVVNYDI--------------PMDSESYVHRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred CCCcccCCEEEEeCC--------------CCCHHHHHHHhccccCCCCcceEEEEechH
Confidence 9999 9999999998 889999999999999999999997766554
No 19
>KOG0335|consensus
Probab=100.00 E-value=4e-33 Score=318.03 Aligned_cols=242 Identities=15% Similarity=0.160 Sum_probs=171.9
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCC--CCCCCEEEEcccccc--------CCCCeeEEE
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGE--EKPANHVACTVEMTS--------VNIPYEVAV 913 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~--~~~~~Ivv~T~e~~~--------~l~~~~~lV 913 (1269)
.++++|++||||||.|++++.+++. .++...+|+.....+.. ..+++|+||||..+. .+++++++|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLV 231 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEE
Confidence 3789999999999999999998753 35666777754433332 238999999998443 288999999
Q ss_pred Eeccccccc-CCchhHHHHHHhccCc----ceEEEEeecCChHHHHHHHHHcCCc-eE---EEecccCCcc---------
Q psy12699 914 IDEIQMMRD-ITRGWAWTRALLGLMA----KEIHVCGEAGAVDLVKAIMMTTNED-VE---VYKYKRLTEL--------- 975 (1269)
Q Consensus 914 iDEah~~~d-~~rg~~~~~~ll~l~~----~~~~l~~s~~~~~~~~~l~~~~~~~-~~---v~~~~r~~~l--------- 975 (1269)
+||||+|+| ++|+..+.+++..... ..+.++++++-...++.+....-.+ +. +....+..+.
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999999 9999999999876633 4677888877776666555332221 11 1111111000
Q ss_pred --ccccccccccCCc----CCC-----CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCcc
Q psy12699 976 --QIEDSAVGSLDNI----QPG-----DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK 1043 (1269)
Q Consensus 976 --~~~~~~~~~l~~~----~~g-----~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~ 1043 (1269)
......+..+... ..+ ..++|+ +++.+..++..|...+.+
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~---------------------------- 363 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP---------------------------- 363 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC----------------------------
Confidence 0000011111100 111 345555 666666666666555544
Q ss_pred chhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC
Q psy12699 1044 VMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS 1122 (1269)
Q Consensus 1044 ~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~ 1122 (1269)
...+||..++.||++.++.|+ +|+..+||||++++||+|| +|++||+||+
T Consensus 364 -----------------------~~sIhg~~tq~er~~al~~Fr--~g~~pvlVaT~VaaRGlDi~~V~hVInyDm---- 414 (482)
T KOG0335|consen 364 -----------------------AKSIHGDRTQIEREQALNDFR--NGKAPVLVATNVAARGLDIPNVKHVINYDM---- 414 (482)
T ss_pred -----------------------ceeecchhhhhHHHHHHHHhh--cCCcceEEEehhhhcCCCCCCCceeEEeec----
Confidence 556788888888888889999 9999999999999999999 9999999999
Q ss_pred cccCCccccccCCHhHHHHHhcccCCCCCccccc
Q psy12699 1123 LNEKGEREIDLISVSAALQIAGRAGRFNTHFEKL 1156 (1269)
Q Consensus 1123 ~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~ 1156 (1269)
|.+..+|+||+|||||.|+.|.++
T Consensus 415 ----------P~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 415 ----------PADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred ----------CcchhhHHHhccccccCCCCceeE
Confidence 888999999999999987776664
No 20
>KOG0343|consensus
Probab=100.00 E-value=4.2e-33 Score=312.45 Aligned_cols=294 Identities=19% Similarity=0.198 Sum_probs=216.6
Q ss_pred cccCCceEEeccCCCCchHHH----HHHHhc-------CCcEEEEcchHHHHHHHHHHHhccCC----Cceeeecceeee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA----LERFLS-------AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKF 885 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~----l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~ 885 (1269)
.+.|+|++..|.||||||+++ +.++.+ |--++|+.||||||.|+++.+++.|. .++++.|+....
T Consensus 103 aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k 182 (758)
T KOG0343|consen 103 ALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK 182 (758)
T ss_pred hccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH
Confidence 378999999999999999888 444443 55689999999999999999987664 788999885533
Q ss_pred ccC-CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHH
Q psy12699 886 IQG-EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 886 ~~~-~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~ 955 (1269)
... .-.+.+|+||||..+- ...++.++|+||||+++|+++...+..++..+|..+++++++++....+++
T Consensus 183 ~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkd 262 (758)
T KOG0343|consen 183 FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKD 262 (758)
T ss_pred HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHH
Confidence 222 2237899999987332 256999999999999999999999999999999999999999999999999
Q ss_pred HHHHcC-CceEEEecccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHhcCCceEEEe-CCCChhhHHHHhc
Q psy12699 956 IMMTTN-EDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIESRGTEVAVIY-GSLPPTTKLAQAS 1033 (1269)
Q Consensus 956 l~~~~~-~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~~~i~-g~l~~~~r~~~~~ 1033 (1269)
++.... ++..+..++..+. ....++ ...++++.....+..+-..++..-..-.+++ .+..+..-...+
T Consensus 263 LaRLsL~dP~~vsvhe~a~~--------atP~~L-~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~- 332 (758)
T KOG0343|consen 263 LARLSLKDPVYVSVHENAVA--------ATPSNL-QQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEA- 332 (758)
T ss_pred HHHhhcCCCcEEEEeccccc--------cChhhh-hheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHH-
Confidence 997643 3333332211100 000000 0112223344445555555555433323222 222111111111
Q ss_pred ccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceE
Q psy12699 1034 KFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRR 1112 (1269)
Q Consensus 1034 ~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~ 1112 (1269)
..-++-|+++..+||+|++..|.++..+|. ..+--||+|||+++||+|+ .|++
T Consensus 333 ------------------------F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~--~~~~~vLF~TDv~aRGLDFpaVdw 386 (758)
T KOG0343|consen 333 ------------------------FCRLRPGIPLLALHGTMSQKKRIEVYKKFV--RKRAVVLFCTDVAARGLDFPAVDW 386 (758)
T ss_pred ------------------------HHhcCCCCceeeeccchhHHHHHHHHHHHH--HhcceEEEeehhhhccCCCcccce
Confidence 011345778999999999999999999999 7788999999999999999 9999
Q ss_pred EEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1113 VIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1113 VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
||.+|. |-+.++|+||+||++|.+.+|.++++..|.+.
T Consensus 387 ViQ~DC--------------Pedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 387 VIQVDC--------------PEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred EEEecC--------------chhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 999998 89999999999999999999999888888863
No 21
>KOG0326|consensus
Probab=100.00 E-value=3.6e-33 Score=294.19 Aligned_cols=295 Identities=18% Similarity=0.159 Sum_probs=228.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~- 888 (1269)
.+.|+|+++-|..|+|||.+|.-.+++ .-++++++||||||.|+.+.+.+ .|+++...+|+....++.
T Consensus 119 aLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~ 198 (459)
T KOG0326|consen 119 ALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIM 198 (459)
T ss_pred eecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccccccee
Confidence 477899999999999999888222222 45789999999999999877765 455778889987765543
Q ss_pred -CCCCCCEEEEccc-cccC-------CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 889 -EEKPANHVACTVE-MTSV-------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e-~~~~-------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
.+...+++|+||. .+++ +++...+|+||||.+++.+++...++.+.-+|.+++.++.+++-+-.++.+...
T Consensus 199 Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~ 278 (459)
T KOG0326|consen 199 RLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDR 278 (459)
T ss_pred eecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHH
Confidence 2337899999998 4442 889999999999999999999999999999999988888887777667777644
Q ss_pred -cCCceEEEecccCCccccc--------cccccc----cCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 960 -TNEDVEVYKYKRLTELQIE--------DSAVGS----LDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 960 -~~~~~~v~~~~r~~~l~~~--------~~~~~~----l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
...++++.-.+......+. ...+.. +..+.-.++|+|+ +.+.++.+|+.+.+.|..
T Consensus 279 ~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGys---------- 348 (459)
T KOG0326|consen 279 HLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS---------- 348 (459)
T ss_pred hccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccch----------
Confidence 4455554433322211110 011111 2334556777777 888888888888777665
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1105 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~G 1105 (1269)
+.+.|+.|.+++|.++.+.|+ +|.++.|||||.+.||
T Consensus 349 -----------------------------------------cyyiHakM~Q~hRNrVFHdFr--~G~crnLVctDL~TRG 385 (459)
T KOG0326|consen 349 -----------------------------------------CYYIHAKMAQEHRNRVFHDFR--NGKCRNLVCTDLFTRG 385 (459)
T ss_pred -----------------------------------------hhHHHHHHHHhhhhhhhhhhh--ccccceeeehhhhhcc
Confidence 556799999999999999999 9999999999999999
Q ss_pred ccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcccccccchhhhhhhhhHHHhhc
Q psy12699 1106 LNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQIAG 1184 (1269)
Q Consensus 1106 IDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~qia~ 1184 (1269)
||+ .++.|||+|. |.+.++|.||+||.||+|.-|.+
T Consensus 386 IDiqavNvVINFDf--------------pk~aEtYLHRIGRsGRFGhlGlA----------------------------- 422 (459)
T KOG0326|consen 386 IDIQAVNVVINFDF--------------PKNAETYLHRIGRSGRFGHLGLA----------------------------- 422 (459)
T ss_pred cccceeeEEEecCC--------------CCCHHHHHHHccCCccCCCcceE-----------------------------
Confidence 999 9999999999 77899999999999998877644
Q ss_pred cCCCCcccccccceEeeCCCChHHHHHhhcCCCCccc
Q psy12699 1185 RAGRFNTHFEKGFVTTFKPDDLPILKNLLAQSPEPIT 1221 (1269)
Q Consensus 1185 ~~g~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 1221 (1269)
+.++++-+...+..+++-+..+..++.
T Consensus 423 ----------InLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 423 ----------INLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred ----------EEEEehhhhhhHHHHHHHhccccccCC
Confidence 567777777888888888877766654
No 22
>KOG0336|consensus
Probab=100.00 E-value=3.2e-32 Score=294.91 Aligned_cols=281 Identities=17% Similarity=0.152 Sum_probs=198.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHH-------------hcCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF-------------LSAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l-------------~~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~ 884 (1269)
+++|+|++.+|+||+|||++++..- ..++.+|++.||||||.|+.-++.+ .|.+..+++|+..+
T Consensus 254 ~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR 333 (629)
T KOG0336|consen 254 LLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNR 333 (629)
T ss_pred eecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCc
Confidence 4777888888888888888773211 1167899999999999999977765 35566667777666
Q ss_pred eccCCCC--CCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 885 FIQGEEK--PANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 885 ~~~~~~~--~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
.++.+.. +.+|+++||..+. .+..+.++|+||||+|+|+++.....++++...++++.++.+++-.+-++
T Consensus 334 ~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~Vr 413 (629)
T KOG0336|consen 334 NEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVR 413 (629)
T ss_pred hhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHH
Confidence 6665433 7899999998554 27899999999999999999999999999999999999999999888899
Q ss_pred HHHHHcC-CceEEEecccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHH-HHhcC--CceEEEeCCCChhhHHH
Q psy12699 955 AIMMTTN-EDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRG-IESRG--TEVAVIYGSLPPTTKLA 1030 (1269)
Q Consensus 955 ~l~~~~~-~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~-L~~~~--~~~~~i~g~l~~~~r~~ 1030 (1269)
.++.... ++..+....- . +-.... -.+.++..+..+-.++.+. .+..+ .++.+..+..- +
T Consensus 414 rLa~sY~Kep~~v~vGsL----d-----L~a~~s--VkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~---~-- 477 (629)
T KOG0336|consen 414 RLAQSYLKEPMIVYVGSL----D-----LVAVKS--VKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKV---M-- 477 (629)
T ss_pred HHHHHhhhCceEEEeccc----c-----eeeeee--eeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechh---h--
Confidence 9986633 2222211100 0 000111 1223322222222222222 22222 12222111100 0
Q ss_pred HhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-C
Q psy12699 1031 QASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-S 1109 (1269)
Q Consensus 1031 ~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~ 1109 (1269)
+ +.| -..+...|+....+||+-.+.+|+..++.|+ .|+++||||||++.||+|+ +
T Consensus 478 -A----------D~L-----------SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILvaTDlaSRGlDv~D 533 (629)
T KOG0336|consen 478 -A----------DHL-----------SSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRILVATDLASRGLDVPD 533 (629)
T ss_pred -h----------hhc-----------cchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEEEEEechhhcCCCchh
Confidence 0 000 0234456777888999999999999999999 9999999999999999999 9
Q ss_pred ceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1110 IRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1110 v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
|.||+|||+ |.+.++|+||+||+||+|+.|.+
T Consensus 534 iTHV~NyDF--------------P~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 534 ITHVYNYDF--------------PRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred cceeeccCC--------------CccHHHHHHHhcccccCCCCcce
Confidence 999999999 89999999999999996655544
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.7e-32 Score=327.34 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=196.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-----------CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-----------AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKF 885 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-----------~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~ 885 (1269)
+++|+|++++||||+|||++|+..++. ..+++|++||||||.|+++++..+ +.++..++|+....
T Consensus 35 ~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~ 114 (434)
T PRK11192 35 ALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYM 114 (434)
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHH
Confidence 367899999999999999988433321 368999999999999999887654 45777888876543
Q ss_pred ccCC--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh-HHHH
Q psy12699 886 IQGE--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV-DLVK 954 (1269)
Q Consensus 886 ~~~~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~-~~~~ 954 (1269)
.+.+ ..+++|+|+||+.+. .+.+++++|+||||++++.+++..+..+...++.....+..+++.. +.+.
T Consensus 115 ~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~ 194 (434)
T PRK11192 115 NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQ 194 (434)
T ss_pred HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHH
Confidence 3321 236799999997432 2678999999999999998888888888776665555555555543 4456
Q ss_pred HHHHHc-CCceEEEecccCCc---cc---cc----cc---cc-cccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 955 AIMMTT-NEDVEVYKYKRLTE---LQ---IE----DS---AV-GSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 955 ~l~~~~-~~~~~v~~~~r~~~---l~---~~----~~---~~-~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
.+.... ..+..+........ +. +. .. .+ ..+.....+.++||+ +++.++.+++.|.+.+
T Consensus 195 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~----- 269 (434)
T PRK11192 195 DFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG----- 269 (434)
T ss_pred HHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC-----
Confidence 665443 23333322111000 00 00 00 00 001111233455555 6666777776665433
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1098 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa 1098 (1269)
+.+..+||+|++++|..+++.|+ +|+++||||
T Consensus 270 ----------------------------------------------~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLVa 301 (434)
T PRK11192 270 ----------------------------------------------INCCYLEGEMVQAKRNEAIKRLT--DGRVNVLVA 301 (434)
T ss_pred ----------------------------------------------CCEEEecCCCCHHHHHHHHHHHh--CCCCcEEEE
Confidence 34788999999999999999999 999999999
Q ss_pred cCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1099 TDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1099 Tdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||++++|||+ ++++||++|+ |.+...|+||+|||||+|++|.++.+..+.
T Consensus 302 Td~~~~GiDip~v~~VI~~d~--------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 302 TDVAARGIDIDDVSHVINFDM--------------PRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred ccccccCccCCCCCEEEEECC--------------CCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 9999999999 9999999998 889999999999999999999987665443
No 24
>KOG0953|consensus
Probab=99.98 E-value=1.6e-33 Score=317.09 Aligned_cols=148 Identities=45% Similarity=0.730 Sum_probs=130.4
Q ss_pred ccccchhhhhhhcccccCCccchhhhcccCccceeccCCcchHHHHHHHHHhcCCceEEEeecccCcccccccccCCCCC
Q psy12699 366 TNEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDN 445 (1269)
Q Consensus 366 ~~dvavidEiq~~~d~~Rg~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 445 (1269)
.+|++++||+||++|++|||+||+||+|+.|+|+|+|||+++.+||++||+.|||++||++|+||+||.|++.++|+++|
T Consensus 275 ~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~n 354 (700)
T KOG0953|consen 275 PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSN 354 (700)
T ss_pred ceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEehhhHHhhhhhhcc-ccc-eEEEEeccchhhhhcccC--CccceeEeeecCCCCCCCCCCCC
Q psy12699 446 IQPGDCIVCFSKNDVYTHQGVYTL-GAE-WSLGIGTSSKVLVRNKKS--NTTNLFVPVHVKPNTDPTDANVG 513 (1269)
Q Consensus 446 ~~~~~~~~~f~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 513 (1269)
|++|||||||||+|||.+|--|++ +.. |||+||.|.|+||++|.. |..+----|-|-+.+--|.-|.+
T Consensus 355 lk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~ 426 (700)
T KOG0953|consen 355 LKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN 426 (700)
T ss_pred CCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc
Confidence 999999999999999999999988 555 999999999999998853 22212223444555555555544
No 25
>KOG1444|consensus
Probab=99.98 E-value=3.8e-31 Score=285.79 Aligned_cols=296 Identities=36% Similarity=0.605 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGN 141 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (1269)
...++.+++|+++++.|++.||++++.|+||...++...|.+++.+.+++.++.|..+.++++++.+|+|+|.++++.++
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH
Confidence 44578889999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred hhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHHHHHH
Q psy12699 142 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNFLTA 221 (1269)
Q Consensus 142 ~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~~~~a 221 (1269)
++++..+++|+++++++++|+++|+++++.+.+|++.++++..|.+++.+.+|....+.+|.+++..|+.|++.++++.+
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a 170 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA 170 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12699 222 VNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYE--YLWDMWFQIQFILSCCMGFILNYSIMLC 299 (1269)
Q Consensus 222 ~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~v~~~~~~~~~~~~ 299 (1269)
.+.++.|+.+ +..+.+.+.+++|.++++++.+..+.+++||+. ..... .+.+..+|..++++|+++++++|+.+||
T Consensus 171 ~~~v~~kk~v-d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~c 248 (314)
T KOG1444|consen 171 AFVVYVKKSV-DSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLC 248 (314)
T ss_pred HHHHHHHHhh-ccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 445789999999999999999999999999987 43333 3566778888999999999999999999
Q ss_pred hhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCCcc
Q psy12699 300 TQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPAPV 360 (1269)
Q Consensus 300 i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~~~ 360 (1269)
.+..|++|.++++ ++..+.+.++.+++|+.++++.+++|+.+.+.|.++|++.+.++++.
T Consensus 249 t~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 249 TRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred Hhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 9999999999999 88888888888888887889999999999999999999998765543
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.9e-31 Score=323.94 Aligned_cols=275 Identities=19% Similarity=0.157 Sum_probs=188.6
Q ss_pred cccCCceEEeccCCCCchHHHHHH----Hhc----------CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecce
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLS----------AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEE 882 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~----------~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~ 882 (1269)
+++|+|+++++|||||||++|+.. +.+ ..+++|++||||||.|+++.++++ +.++..++|+.
T Consensus 121 ~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~ 200 (475)
T PRK01297 121 TLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGM 200 (475)
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccC
Confidence 477899999999999999888332 222 358999999999999999988764 44566677764
Q ss_pred eeeccC---CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--ceEEEEeecCC
Q psy12699 883 KKFIQG---EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--KEIHVCGEAGA 949 (1269)
Q Consensus 883 ~~~~~~---~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--~~~~l~~s~~~ 949 (1269)
....+. ....++|+|+||+++. .+++++++||||+|++.+.++...+..++..++. +...++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~ 280 (475)
T PRK01297 201 DFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATF 280 (475)
T ss_pred ChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeec
Confidence 332221 2336899999998543 2789999999999999887777777777666543 33445555554
Q ss_pred hHHHHHHHHH-cCCceEEEecccCCc-cccccc------------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCC
Q psy12699 950 VDLVKAIMMT-TNEDVEVYKYKRLTE-LQIEDS------------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGT 1014 (1269)
Q Consensus 950 ~~~~~~l~~~-~~~~~~v~~~~r~~~-l~~~~~------------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~ 1014 (1269)
......+... ...+..+........ ...... ....+......+++||+ +++.++.+++.|.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~-- 358 (475)
T PRK01297 281 TDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD-- 358 (475)
T ss_pred CHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--
Confidence 4444444433 233322211111000 000000 00001111122445554 555555555555433
Q ss_pred ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCee
Q psy12699 1015 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK 1094 (1269)
Q Consensus 1015 ~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~ 1094 (1269)
|+.+..+||++++++|.++++.|+ +|+++
T Consensus 359 -------------------------------------------------~~~~~~~~g~~~~~~R~~~~~~Fr--~G~~~ 387 (475)
T PRK01297 359 -------------------------------------------------GINAAQLSGDVPQHKRIKTLEGFR--EGKIR 387 (475)
T ss_pred -------------------------------------------------CCCEEEEECCCCHHHHHHHHHHHh--CCCCc
Confidence 344778899999999999999999 99999
Q ss_pred EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1095 VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1095 VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||||||++++|||+ ++++||++|. |.+.++|+||+|||||.|++|.++++..++
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~--------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTL--------------PEDPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCC--------------CCCHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99999999999999 9999999998 899999999999999999999886665443
No 27
>KOG0339|consensus
Probab=99.97 E-value=1.2e-31 Score=297.72 Aligned_cols=280 Identities=20% Similarity=0.191 Sum_probs=208.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh------------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL------------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~------------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~ 884 (1269)
.+.|++++..|.||||||.+++..+. .++-++|++||||||.|++.+++++ |+++..++|+...
T Consensus 257 alsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk 336 (731)
T KOG0339|consen 257 ALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSK 336 (731)
T ss_pred ccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcH
Confidence 46788888888888888888733221 1688999999999999999888776 4577778888777
Q ss_pred eccCCCC--CCCEEEEccccc-c-------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 885 FIQGEEK--PANHVACTVEMT-S-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 885 ~~~~~~~--~~~Ivv~T~e~~-~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
.+|.... ++.|+||||+.+ + .+.++.+||+||+|+|.|+++.....-+.....++++.++++++....++
T Consensus 337 ~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe 416 (731)
T KOG0339|consen 337 WEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE 416 (731)
T ss_pred HHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH
Confidence 7776443 899999999833 2 38899999999999999999999999999999999999999998887787
Q ss_pred HHHHH-cCCceEEEecccC---Ccccc-----------cccccccc-CCcCCCCEEEEec-HHhHHHHHHHHHhcCCceE
Q psy12699 955 AIMMT-TNEDVEVYKYKRL---TELQI-----------EDSAVGSL-DNIQPGDCIVCFS-KNDVYTVSRGIESRGTEVA 1017 (1269)
Q Consensus 955 ~l~~~-~~~~~~v~~~~r~---~~l~~-----------~~~~~~~l-~~~~~g~~iv~~s-~~~~~~l~~~L~~~~~~~~ 1017 (1269)
.++.. .++++.+...+-- ..++. .......+ .....|++++|++ +.++++++..|.
T Consensus 417 ~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk------- 489 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK------- 489 (731)
T ss_pred HHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc-------
Confidence 77754 4555554322110 00000 00000001 1123344555542 233444444333
Q ss_pred EEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEE
Q psy12699 1018 VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMV 1097 (1269)
Q Consensus 1018 ~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLV 1097 (1269)
.+|+++..+||++.+.+|.+++.+|+ ++...|||
T Consensus 490 --------------------------------------------lk~~~v~llhgdkdqa~rn~~ls~fK--kk~~~Vlv 523 (731)
T KOG0339|consen 490 --------------------------------------------LKGFNVSLLHGDKDQAERNEVLSKFK--KKRKPVLV 523 (731)
T ss_pred --------------------------------------------cccceeeeecCchhhHHHHHHHHHHh--hcCCceEE
Confidence 34556888899999999999999999 89999999
Q ss_pred EcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcccccc
Q psy12699 1098 ATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKG 1167 (1269)
Q Consensus 1098 aTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~ 1167 (1269)
|||+++||+|| ++++|||||. ..+.+.|.||+||+||+|.+|.+.++..+...+..
T Consensus 524 atDvaargldI~~ikTVvnyD~--------------ardIdththrigrtgRag~kGvayTlvTeKDa~fA 580 (731)
T KOG0339|consen 524 ATDVAARGLDIPSIKTVVNYDF--------------ARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA 580 (731)
T ss_pred EeeHhhcCCCccccceeecccc--------------cchhHHHHHHhhhcccccccceeeEEechhhHHHh
Confidence 99999999999 9999999998 45799999999999999999999777766644443
No 28
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=333.90 Aligned_cols=318 Identities=24% Similarity=0.277 Sum_probs=223.8
Q ss_pred HHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhc-----CCcEEEEcchHHHHHHHHHHHh---ccCCCceeeecce
Q psy12699 811 LERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLS-----AESGVYCGPLKMLATEVFKKSN---DRGTPCDLITGEE 882 (1269)
Q Consensus 811 l~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~-----~~~~lil~Ptr~La~Qi~~~l~---~~g~~v~~~~G~~ 882 (1269)
.++.-...+++++|+|+++++|||||||++++.++.+ +.+++|++|+|+||.|++++++ .+|.++++.||+.
T Consensus 34 ~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~ 113 (766)
T COG1204 34 NPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDY 113 (766)
T ss_pred HHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCc
Confidence 3444444567888999999999999999999555544 4799999999999999999987 7899999999996
Q ss_pred eeeccCCCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--ceEEEEeecCChHH
Q psy12699 883 KKFIQGEEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--KEIHVCGEAGAVDL 952 (1269)
Q Consensus 883 ~~~~~~~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--~~~~l~~s~~~~~~ 952 (1269)
.... ..-.+++|+|+|+|.++ +...++++||||+|.+.|..||+..+.++..+.. ..+.+.+.....++
T Consensus 114 ~~~~-~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN 192 (766)
T COG1204 114 DLDD-ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN 192 (766)
T ss_pred ccch-hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC
Confidence 5322 12347999999999766 2568999999999999998899999888766544 23677777777788
Q ss_pred HHHHHHHcCCceEEEecccCC------ccccc----c------------cccc-ccCCc-CCCCEEEEe-cHHhHHHHHH
Q psy12699 953 VKAIMMTTNEDVEVYKYKRLT------ELQIE----D------------SAVG-SLDNI-QPGDCIVCF-SKNDVYTVSR 1007 (1269)
Q Consensus 953 ~~~l~~~~~~~~~v~~~~r~~------~l~~~----~------------~~~~-~l~~~-~~g~~iv~~-s~~~~~~l~~ 1007 (1269)
..+++.+.+-+.. ...-|+. +.... . .... ....+ ..++++||+ +|+.+...++
T Consensus 193 ~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~ 271 (766)
T COG1204 193 AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAK 271 (766)
T ss_pred HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHH
Confidence 8888877553322 1111222 11110 0 0000 01112 345888888 9999999999
Q ss_pred HHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhcc
Q psy12699 1008 GIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1087 (1269)
Q Consensus 1008 ~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~ 1087 (1269)
.+...-.. ..++......... .. +....+........+.+++..| +++||+||+.++|+.+++.|+
T Consensus 272 ~l~~~~~~------~~~~~~~~~~~~~----a~--~~~~~~~~~~~~~~l~e~v~~G--vafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 272 KLRIKMSA------TLSDDEKIVLDEG----AS--PILIPETPTSEDEELAELVLRG--VAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred HHHHHHhh------cCChhhhhhcccc----cc--ccccccccccchHHHHHHHHhC--ccccccCCCHHHHHHHHHHHh
Confidence 98752111 1111111110000 00 0000000111123344566667 899999999999999999999
Q ss_pred CCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC
Q psy12699 1088 DPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1088 ~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
+|+++|||||++++.|+|+++++||..|..+++. ..| +++++.-++.|+.|||||-|
T Consensus 338 --~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~-~~g---~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 338 --KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDP-KGG---IVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred --cCCceEEEechHHhhhcCCcceEEEEeeeEEEcC-CCC---eEECchhhHhhccCcCCCCC
Confidence 9999999999999999999999999999866642 223 56899999999999999944
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=3.7e-31 Score=329.15 Aligned_cols=274 Identities=18% Similarity=0.138 Sum_probs=190.5
Q ss_pred ccccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC--------CC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG--------EE 890 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~--------~~ 890 (1269)
.+++|+|+++++|||+|||++| +.++..++.+||++|+++|+.++..++...|++...+.|+....++. ..
T Consensus 471 aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~ 550 (1195)
T PLN03137 471 ATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEY 550 (1195)
T ss_pred HHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcC
Confidence 3588999999999999999999 56666788999999999999988888888888888888765433221 12
Q ss_pred CCCCEEEEccccccC-------------CCCeeEEEEecccccccCC--chhHHHHH--H-hccCcceEEEEeecCChHH
Q psy12699 891 KPANHVACTVEMTSV-------------NIPYEVAVIDEIQMMRDIT--RGWAWTRA--L-LGLMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~~-------------l~~~~~lViDEah~~~d~~--rg~~~~~~--l-l~l~~~~~~l~~s~~~~~~ 952 (1269)
...+|+++|||.+.. ...+.++||||||++++.+ +...+..+ + ..++..++..+.++.+...
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V 630 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASV 630 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHH
Confidence 468999999995421 2358999999999997643 22333321 2 2233334444433333333
Q ss_pred HHHHHHHcCC--ceEEE-ecccCCcccccc---------ccccccCC-cCCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 953 VKAIMMTTNE--DVEVY-KYKRLTELQIED---------SAVGSLDN-IQPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 953 ~~~l~~~~~~--~~~v~-~~~r~~~l~~~~---------~~~~~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
.+++....+. ...+. ...|+ .+.+.. .....+.. ...+..|||+ ++++++.+++.|.+.|.
T Consensus 631 ~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gi---- 705 (1195)
T PLN03137 631 KEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGH---- 705 (1195)
T ss_pred HHHHHHHcCCCCcEEeecccCcc-ceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCC----
Confidence 3444443321 11111 12222 111100 00000111 1122334444 77777777777665443
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1098 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa 1098 (1269)
.+..|||+|++++|+.++++|+ +|+++||||
T Consensus 706 -----------------------------------------------ka~~YHAGLs~eeR~~vqe~F~--~Gei~VLVA 736 (1195)
T PLN03137 706 -----------------------------------------------KAAFYHGSMDPAQRAFVQKQWS--KDEINIICA 736 (1195)
T ss_pred -----------------------------------------------CeeeeeCCCCHHHHHHHHHHHh--cCCCcEEEE
Confidence 4788999999999999999999 999999999
Q ss_pred cCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCC
Q psy12699 1099 TDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1099 Tdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p 1161 (1269)
|++++||||+ +|++||++++ |.+.++|+||+|||||+|+.|.|+++..+
T Consensus 737 TdAFGMGIDkPDVR~VIHydl--------------PkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 737 TVAFGMGINKPDVRFVIHHSL--------------PKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred echhhcCCCccCCcEEEEcCC--------------CCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 9999999999 9999999999 88999999999999999999999776554
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=8.4e-31 Score=318.65 Aligned_cols=273 Identities=22% Similarity=0.217 Sum_probs=193.2
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~ 893 (1269)
+++|+|+++++|||||||++| +..+..++.++|++|||+|+.|++++++..|.++..+.|+....+.. .....
T Consensus 23 ~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~ 102 (470)
T TIGR00614 23 VLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKI 102 (470)
T ss_pred HHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 478999999999999999999 55556688999999999999999999999999888888765432111 23368
Q ss_pred CEEEEcccccc----------CCCCeeEEEEecccccccCCc--hhHHHH---HHhccCcceEEEEeecCChH-HHHHHH
Q psy12699 894 NHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITR--GWAWTR---ALLGLMAKEIHVCGEAGAVD-LVKAIM 957 (1269)
Q Consensus 894 ~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~r--g~~~~~---~ll~l~~~~~~l~~s~~~~~-~~~~l~ 957 (1269)
+|+++|||.+. ...+++++||||||++++.+. ...+.. ....++..++..+ ++++.+ ..+++.
T Consensus 103 ~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~l-TAT~~~~~~~di~ 181 (470)
T TIGR00614 103 KLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMAL-TATASPSVREDIL 181 (470)
T ss_pred CEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEE-ecCCCHHHHHHHH
Confidence 99999999543 246899999999999976432 222222 1222333333333 444433 334444
Q ss_pred HHcC--CceE-EEecccCCccccc--c-------ccccccCCcCCC-CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 958 MTTN--EDVE-VYKYKRLTELQIE--D-------SAVGSLDNIQPG-DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 958 ~~~~--~~~~-v~~~~r~~~l~~~--~-------~~~~~l~~~~~g-~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
...+ .+.. .....++. +.+. . .....+....++ ..|||+ ++++++.+++.|++.+.
T Consensus 182 ~~l~l~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~--------- 251 (470)
T TIGR00614 182 RQLNLKNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGI--------- 251 (470)
T ss_pred HHcCCCCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCC---------
Confidence 4322 1111 11222211 1110 0 001111111223 335555 88888888888765443
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
.+..+||+|++++|+++++.|+ +|+++|||||++++
T Consensus 252 ------------------------------------------~~~~~H~~l~~~eR~~i~~~F~--~g~~~vLVaT~~~~ 287 (470)
T TIGR00614 252 ------------------------------------------AAGAYHAGLEISARDDVHHKFQ--RDEIQVVVATVAFG 287 (470)
T ss_pred ------------------------------------------CeeEeeCCCCHHHHHHHHHHHH--cCCCcEEEEechhh
Confidence 3778999999999999999999 99999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||||+ +|++||++++ |.|.++|+||+|||||.|++|.++++..|.
T Consensus 288 ~GID~p~V~~VI~~~~--------------P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 288 MGINKPDVRFVIHYSL--------------PKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred ccCCcccceEEEEeCC--------------CCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 99999 9999999998 889999999999999999999997776665
No 31
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=3.3e-31 Score=338.65 Aligned_cols=314 Identities=22% Similarity=0.248 Sum_probs=205.8
Q ss_pred cccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhcc---CCCceeeecceeeeccCCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDR---GTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~---g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
+.+|+|++++||||||||++|..+ +..+++++|++|+|+||.|++++++++ |.++...+|+...... .....
T Consensus 36 ~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-~l~~~ 114 (737)
T PRK02362 36 LLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-WLGDN 114 (737)
T ss_pred HhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-ccCCC
Confidence 578999999999999999999433 334789999999999999999999776 7788899998543221 12368
Q ss_pred CEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccC---cceEEEEeecCChHHHHHHHHHcCC
Q psy12699 894 NHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM---AKEIHVCGEAGAVDLVKAIMMTTNE 962 (1269)
Q Consensus 894 ~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~---~~~~~l~~s~~~~~~~~~l~~~~~~ 962 (1269)
+|+|+|||.++ ++++++++|+||+|+++|.+||..++.++..+. .....+..+++. +..+++..+.+.
T Consensus 115 ~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl-~n~~~la~wl~~ 193 (737)
T PRK02362 115 DIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI-GNADELADWLDA 193 (737)
T ss_pred CEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC-CCHHHHHHHhCC
Confidence 99999999543 367899999999999999999999987765442 222222222222 223444444331
Q ss_pred ceEEEecccCCcccc----------c-----------ccccccc-CCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 963 DVEVYKYKRLTELQI----------E-----------DSAVGSL-DNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 963 ~~~v~~~~r~~~l~~----------~-----------~~~~~~l-~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
.. +....|++++.. . ......+ +.+ ..++++||+ ++++++.+++.|.+.....
T Consensus 194 ~~-~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-- 270 (737)
T PRK02362 194 EL-VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-- 270 (737)
T ss_pred Cc-ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc--
Confidence 11 111112222110 0 0000001 112 345788888 9999999999997653221
Q ss_pred EeCCCChhh--HHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEE
Q psy12699 1019 IYGSLPPTT--KLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096 (1269)
Q Consensus 1019 i~g~l~~~~--r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VL 1096 (1269)
+.+.+ ......+ .+...........+..++..| +++|||+|++++|+.+++.|+ +|.++||
T Consensus 271 ----~~~~~~~~~~~~~~---------~l~~~~~~~~~~~L~~~l~~g--va~hHagl~~~eR~~ve~~Fr--~G~i~VL 333 (737)
T PRK02362 271 ----LTAAERAELAELAE---------EIREVSDTETSKDLADCVAKG--AAFHHAGLSREHRELVEDAFR--DRLIKVI 333 (737)
T ss_pred ----CCHHHHHHHHHHHH---------HHHhccCccccHHHHHHHHhC--EEeecCCCCHHHHHHHHHHHH--cCCCeEE
Confidence 11111 1111100 000000000112223334455 999999999999999999999 9999999
Q ss_pred EEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc--cccccCCC
Q psy12699 1097 VATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH--FEKLAGSH 1160 (1269)
Q Consensus 1097 VaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~--g~~~~~~~ 1160 (1269)
|||+++++|+|++...||..+..+|+ |.....|.+..+|.||+|||||.|.+ |.++....
T Consensus 334 vaT~tla~GvnlPa~~VVI~~~~~yd----~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 334 SSTPTLAAGLNLPARRVIIRDYRRYD----GGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred EechhhhhhcCCCceEEEEecceeec----CCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 99999999999966667776665554 21123599999999999999999976 66644443
No 32
>KOG1441|consensus
Probab=99.97 E-value=1.1e-31 Score=298.72 Aligned_cols=297 Identities=21% Similarity=0.327 Sum_probs=260.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCC-ChhhhHhhhhhHHHHH
Q psy12699 61 TIAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNY-HRNIFFELMPLPFIYL 139 (1269)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 139 (1269)
......+..+|++++++.+++||++++.++|++|++++..|++.+.+...+.+.++..+.++. ++..++.++|+|++++
T Consensus 15 ~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~ 94 (316)
T KOG1441|consen 15 ILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFC 94 (316)
T ss_pred hHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHH
Confidence 356667789999999999999999999999999999999999999999999888876555554 4467789999999999
Q ss_pred HHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHHHH
Q psy12699 140 GNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNFL 219 (1269)
Q Consensus 140 ~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~~~ 219 (1269)
++..++|.|+.++|++++|++|++.|+|+.++++++.+|++++..++++++++.||.+++.+|.+||+.|++.++++.+.
T Consensus 95 ~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~ 174 (316)
T KOG1441|consen 95 ISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLA 174 (316)
T ss_pred HHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC-CCCCCChHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy12699 220 TAVNGVYTKKKLD-PKKDMGKYGLMFYSSVFMLPVTV-IFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIM 297 (1269)
Q Consensus 220 ~a~~~v~~k~~l~-~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~ 297 (1269)
.++++++.+++++ +.++.|++++++|++++++++++ |+..+.+.....+.....++..++..++.+ ++++++|.+.|
T Consensus 175 ~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f 253 (316)
T KOG1441|consen 175 FALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAF 253 (316)
T ss_pred HHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHH
Confidence 9999999999884 45689999999999999999999 776665432210001112223344344444 99999999999
Q ss_pred HhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCCc
Q psy12699 298 LCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPAP 359 (1269)
Q Consensus 298 ~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~~ 359 (1269)
++++++||+|+++.+.+|.+++++.|+++|++ +.++.+.+|+++.++|+++|++.|.++++
T Consensus 254 ~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~-pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 254 LVIGRTSALTYSVAGHMKRIVVIVVSWLIFGN-PVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHcccCchhhhhhccceEEEEEEeEeeeecC-CCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999 66999999999999999999998876553
No 33
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=9.7e-31 Score=339.27 Aligned_cols=331 Identities=14% Similarity=0.122 Sum_probs=221.9
Q ss_pred HHHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 754 YYLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 754 ~~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++..+.||+-.+.+|.+.|..+.... ...+.+++++|||||+|||..|+.+.+..
T Consensus 588 ~~~~~~~~~~~~~~T~~Q~~aI~~il~d~------~~~~~~d~Ll~a~TGsGKT~val~aa~~~---------------- 645 (1147)
T PRK10689 588 EQYQLFCDSFPFETTPDQAQAINAVLSDM------CQPLAMDRLVCGDVGFGKTEVAMRAAFLA---------------- 645 (1147)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHh------hcCCCCCEEEEcCCCcCHHHHHHHHHHHH----------------
Confidence 35567777999999999999887663221 11123456888888888888766554221
Q ss_pred CCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC------CCCCCCEEEEccccc
Q psy12699 834 NSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG------EEKPANHVACTVEMT 903 (1269)
Q Consensus 834 GsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~ 903 (1269)
+.++++++|++||++||.|+++.+++. +.++..++|.....++. ....++|+|+||+++
T Consensus 646 -----------~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL 714 (1147)
T PRK10689 646 -----------VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL 714 (1147)
T ss_pred -----------HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH
Confidence 245789999999999999999988653 34666677764433322 123689999999866
Q ss_pred cC---CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcC-CceEEEeccc-CCcccc-
Q psy12699 904 SV---NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTN-EDVEVYKYKR-LTELQI- 977 (1269)
Q Consensus 904 ~~---l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~-~~~~v~~~~r-~~~l~~- 977 (1269)
.. +.+++++||||+|+++. .....+..++.+...++.++|+.+....+..... +...+..... ..++..
T Consensus 715 ~~~v~~~~L~lLVIDEahrfG~-----~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~ 789 (1147)
T PRK10689 715 QSDVKWKDLGLLIVDEEHRFGV-----RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 (1147)
T ss_pred hCCCCHhhCCEEEEechhhcch-----hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEE
Confidence 42 67999999999999843 3344455566566677778887766555543222 2222221110 001100
Q ss_pred cccc----c--cccCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhh
Q psy12699 978 EDSA----V--GSLDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATD 1049 (1269)
Q Consensus 978 ~~~~----~--~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~ 1049 (1269)
.... . ..+..+ ..|++++|+ +++.++.+++.|.+...
T Consensus 790 ~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p----------------------------------- 834 (1147)
T PRK10689 790 VREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP----------------------------------- 834 (1147)
T ss_pred EEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------
Confidence 0000 0 001111 234555554 55556666665544311
Q ss_pred hhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCc
Q psy12699 1050 AIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGE 1128 (1269)
Q Consensus 1050 ~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~ 1128 (1269)
+.++..+||+|++++|++++++|+ +|+.+|||||+++++|||+ ++++||..+...|
T Consensus 835 --------------~~~v~~lHG~m~q~eRe~im~~Fr--~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f------- 891 (1147)
T PRK10689 835 --------------EARIAIGHGQMRERELERVMNDFH--HQRFNVLVCTTIIETGIDIPTANTIIIERADHF------- 891 (1147)
T ss_pred --------------CCcEEEEeCCCCHHHHHHHHHHHH--hcCCCEEEECchhhcccccccCCEEEEecCCCC-------
Confidence 223788999999999999999999 9999999999999999999 9999998766333
Q ss_pred cccccCCHhHHHHHhcccCCCCCccccccCCC--Ccccccccchhhhh----hhhhHHHhhccC
Q psy12699 1129 REIDLISVSAALQIAGRAGRFNTHFEKLAGSH--PALNEKGEREIDLI----SVSAALQIAGRA 1186 (1269)
Q Consensus 1129 ~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~--p~~~~~~~~~~~~~----~~~~~~qia~~~ 1186 (1269)
+.++|+||+||+||.|++|+|++... ..+++....+++.+ ++++++++|.++
T Consensus 892 ------glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~d 949 (1147)
T PRK10689 892 ------GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 (1147)
T ss_pred ------CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 46889999999999999999955443 23555555555555 688899999854
No 34
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=5.5e-31 Score=316.35 Aligned_cols=275 Identities=16% Similarity=0.143 Sum_probs=187.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~- 888 (1269)
+++|+|++++||||||||++|+..+. .+.+++|++|||+|+.|+.+.+..++. .+...+|+....++.
T Consensus 62 i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 141 (401)
T PTZ00424 62 ILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN 141 (401)
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH
Confidence 57899999999999999998843322 256899999999999999988876543 455556664332221
Q ss_pred -CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 889 -EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
...+.+|+|+||+.+. .+++++++|+||+|++.+.+++..+..++..++.....+..+++..+....+...
T Consensus 142 ~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 221 (401)
T PTZ00424 142 KLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTK 221 (401)
T ss_pred HHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHH
Confidence 1225799999998542 3789999999999999887777777777777766555555555554444443322
Q ss_pred -cCCceEEEecccCCccccccc--------------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 960 -TNEDVEVYKYKRLTELQIEDS--------------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 960 -~~~~~~v~~~~r~~~l~~~~~--------------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
...+..+..........-... ....+......+.++|+ +++.++.+++.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~------------ 289 (401)
T PTZ00424 222 FMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE------------ 289 (401)
T ss_pred HcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH------------
Confidence 222222211110000000000 00000111112333333 44444444444332
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
.++.+..+||+|++++|+.++++|+ +|+++|||||++++
T Consensus 290 ---------------------------------------~~~~~~~~h~~~~~~~R~~i~~~f~--~g~~~vLvaT~~l~ 328 (401)
T PTZ00424 290 ---------------------------------------RDFTVSCMHGDMDQKDRDLIMREFR--SGSTRVLITTDLLA 328 (401)
T ss_pred ---------------------------------------CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEEccccc
Confidence 2345889999999999999999999 99999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|||+ ++++||++|. |.+..+|+||+||+||.|++|.++.+..++
T Consensus 329 ~GiDip~v~~VI~~~~--------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~ 374 (401)
T PTZ00424 329 RGIDVQQVSLVINYDL--------------PASPENYIHRIGRSGRFGRKGVAINFVTPD 374 (401)
T ss_pred CCcCcccCCEEEEECC--------------CCCHHHEeecccccccCCCCceEEEEEcHH
Confidence 99999 9999999998 889999999999999999999997666554
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=5.7e-31 Score=332.35 Aligned_cols=280 Identities=18% Similarity=0.136 Sum_probs=191.7
Q ss_pred ccccCCceEEeccCCCCchHHHHH----HHhc--CCcEEEEcchHHHHHHHHHHHhccC---CCceeeecceeeeccC-C
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALE----RFLS--AESGVYCGPLKMLATEVFKKSNDRG---TPCDLITGEEKKFIQG-E 889 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~----~l~~--~~~~lil~Ptr~La~Qi~~~l~~~g---~~v~~~~G~~~~~~~~-~ 889 (1269)
.+++|+|+++++|||||||++|+. .+.+ +.++||++||||||+|+++++++++ .++...+|+....++. .
T Consensus 47 ~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i 126 (742)
T TIGR03817 47 LAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA 126 (742)
T ss_pred HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH
Confidence 358899999999999999999933 3322 4689999999999999999998764 4666777875532221 1
Q ss_pred CCCCCEEEEcccccc------------CCCCeeEEEEecccccccCCchhHHHHHHhcc-------CcceEEEEeecCCh
Q psy12699 890 EKPANHVACTVEMTS------------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL-------MAKEIHVCGEAGAV 950 (1269)
Q Consensus 890 ~~~~~Ivv~T~e~~~------------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-------~~~~~~l~~s~~~~ 950 (1269)
..+++|+++||+++. .+++++++||||+|++.+ .+|.....++..+ ..+.+.++.+++..
T Consensus 127 ~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~ 205 (742)
T TIGR03817 127 REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTA 205 (742)
T ss_pred hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 225899999998653 167899999999999965 4776654444332 23445555555544
Q ss_pred HHHHHHHHHcCCceEEEec-ccCCc-ccc--ccc--------------------cccccCCc--CCCCEEEEe-cHHhHH
Q psy12699 951 DLVKAIMMTTNEDVEVYKY-KRLTE-LQI--EDS--------------------AVGSLDNI--QPGDCIVCF-SKNDVY 1003 (1269)
Q Consensus 951 ~~~~~l~~~~~~~~~v~~~-~r~~~-l~~--~~~--------------------~~~~l~~~--~~g~~iv~~-s~~~~~ 1003 (1269)
+..+......+.++.+... ..+.. ..+ ... ....+..+ ...+.++|+ +++.++
T Consensus 206 n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 206 DPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAE 285 (742)
T ss_pred CHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHH
Confidence 3333333334544443211 11110 000 000 00001000 223566666 777777
Q ss_pred HHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHh
Q psy12699 1004 TVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQA 1083 (1269)
Q Consensus 1004 ~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~ 1083 (1269)
.+++.+++...+. + ...+..+..|||++++++|.+++
T Consensus 286 ~l~~~l~~~l~~~-------------------------------------~------~~l~~~v~~~hgg~~~~eR~~ie 322 (742)
T TIGR03817 286 LVAAIARRLLGEV-------------------------------------D------PDLAERVAAYRAGYLPEDRRELE 322 (742)
T ss_pred HHHHHHHHHHHhh-------------------------------------c------cccccchhheecCCCHHHHHHHH
Confidence 7777765421100 0 00123478899999999999999
Q ss_pred hhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCC
Q psy12699 1084 SKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGS 1159 (1269)
Q Consensus 1084 ~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~ 1159 (1269)
++|+ +|++++|||||++++|||| ++++||++|. |.+.++|+||+|||||.|++|.++...
T Consensus 323 ~~f~--~G~i~vLVaTd~lerGIDI~~vd~VI~~~~--------------P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 323 RALR--DGELLGVATTNALELGVDISGLDAVVIAGF--------------PGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred HHHH--cCCceEEEECchHhccCCcccccEEEEeCC--------------CCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 9999 9999999999999999999 9999999998 889999999999999999999985543
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=5.9e-31 Score=334.38 Aligned_cols=329 Identities=17% Similarity=0.180 Sum_probs=213.0
Q ss_pred HHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 755 YLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 755 ~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+.+...+.||+-.+++|.+.|..+....+ ..+.++.++|||||||||..|+.+.+.+
T Consensus 440 ~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~------~~~~~d~Ll~adTGsGKT~val~a~l~a----------------- 496 (926)
T TIGR00580 440 WQQEFEDSFPFEETPDQLKAIEEIKADME------SPRPMDRLVCGDVGFGKTEVAMRAAFKA----------------- 496 (926)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhhc------ccCcCCEEEECCCCccHHHHHHHHHHHH-----------------
Confidence 33455668899889999988877632211 1122455788888888888766555332
Q ss_pred CCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccC------CCCCCCEEEEcccccc
Q psy12699 835 SGKTYHALERFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQG------EEKPANHVACTVEMTS 904 (1269)
Q Consensus 835 sGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~~ 904 (1269)
+.++++++|++||++||.|+++.+++ ++.++..++|.....++. ....++|+|+||..+.
T Consensus 497 ----------l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~ 566 (926)
T TIGR00580 497 ----------VLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQ 566 (926)
T ss_pred ----------HHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhh
Confidence 24578999999999999999998875 345667777764422221 1235899999998664
Q ss_pred ---CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceE-EEec--ccCCccc--
Q psy12699 905 ---VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVE-VYKY--KRLTELQ-- 976 (1269)
Q Consensus 905 ---~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~-v~~~--~r~~~l~-- 976 (1269)
.+.+++++||||+|+++. .....+..+......++.++|+.+....+......+.. +... .|. ++.
T Consensus 567 ~~v~f~~L~llVIDEahrfgv-----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~-~V~t~ 640 (926)
T TIGR00580 567 KDVKFKDLGLLIIDEEQRFGV-----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL-PVRTF 640 (926)
T ss_pred CCCCcccCCEEEeecccccch-----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc-ceEEE
Confidence 378999999999999854 33344555554545566667766544333322111222 1111 110 000
Q ss_pred cc---ccc-ccc-cCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhh
Q psy12699 977 IE---DSA-VGS-LDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATD 1049 (1269)
Q Consensus 977 ~~---~~~-~~~-l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~ 1049 (1269)
+. ... ... ...+ +.+++++++ ++++++.+++.|++..
T Consensus 641 v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~------------------------------------ 684 (926)
T TIGR00580 641 VMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV------------------------------------ 684 (926)
T ss_pred EEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC------------------------------------
Confidence 00 000 000 0011 122333333 4444444444443210
Q ss_pred hhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCc
Q psy12699 1050 AIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGE 1128 (1269)
Q Consensus 1050 ~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~ 1128 (1269)
.++++..+||+|++++|++++++|+ +|+.+|||||+++++|||+ ++++||+++..++
T Consensus 685 -------------p~~~v~~lHG~m~~~eRe~im~~F~--~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~------- 742 (926)
T TIGR00580 685 -------------PEARIAIAHGQMTENELEEVMLEFY--KGEFQVLVCTTIIETGIDIPNANTIIIERADKF------- 742 (926)
T ss_pred -------------CCCeEEEecCCCCHHHHHHHHHHHH--cCCCCEEEECChhhcccccccCCEEEEecCCCC-------
Confidence 1345889999999999999999999 9999999999999999999 9999999988443
Q ss_pred cccccCCHhHHHHHhcccCCCCCccccccCCCCc--ccccccchhhhh----hhhhHHHhhccC
Q psy12699 1129 REIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA--LNEKGEREIDLI----SVSAALQIAGRA 1186 (1269)
Q Consensus 1129 ~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~--~~~~~~~~~~~~----~~~~~~qia~~~ 1186 (1269)
+.++|+||+||+||.|++|+|++...+. +.+....+++.+ ++++++++|.++
T Consensus 743 ------gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~D 800 (926)
T TIGR00580 743 ------GLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHD 800 (926)
T ss_pred ------CHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 4779999999999999999996665443 344444555444 578899999753
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=1.2e-29 Score=295.87 Aligned_cols=292 Identities=12% Similarity=0.200 Sum_probs=245.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--hhhhHhhhhhHHH
Q psy12699 60 TTIAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYH--RNIFFELMPLPFI 137 (1269)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 137 (1269)
..++..+.+++|+++++..+++||++++. +|+|++++.+|++++++++.+++..+..+.++.. +..++.++|+|++
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLC 123 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999999999999999987 5668889999999998877665544433333332 3467789999999
Q ss_pred HHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHH
Q psy12699 138 YLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNN 217 (1269)
Q Consensus 138 ~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~ 217 (1269)
+.+.....+.|+++++++++++++++.|+|++++++++++||++++++++++++++|+++++.++.++++.|++++++|+
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~ 203 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSN 203 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHH
Confidence 87777778899999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC----CCChHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHhh-----cccchHHHHHHHHHHH
Q psy12699 218 FLTAVNGVYTKKKLDPKK----DMGKYGLMFYSSVFMLPVTVIFIYLSDDY--AKVLEY-----EYLWDMWFQIQFILSC 286 (1269)
Q Consensus 218 ~~~a~~~v~~k~~l~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ll~~~ 286 (1269)
+++|+|+++.|+.+++.. +.++..+.+++.++++++++|+.+..|.. ...+.. ........+..++.++
T Consensus 204 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~ 283 (350)
T PTZ00343 204 LGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSG 283 (350)
T ss_pred HHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 999999999999875432 35677788888999999999988766532 222210 0111123344567788
Q ss_pred HHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 287 CMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
+..++.|.+.|++++++||+++++.+++|+++++++|+++|||+ ++..+++|++++++|+++|++.|
T Consensus 284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~-lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC-CchHhHHHHHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999995 59999999999999999998753
No 38
>KOG0332|consensus
Probab=99.97 E-value=1.6e-30 Score=280.33 Aligned_cols=278 Identities=19% Similarity=0.203 Sum_probs=202.2
Q ss_pred CCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceee---eccCCCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKK---FIQGEEKPA 893 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~---~~~~~~~~~ 893 (1269)
.+|+|.+++.|+|||.+|...++. .+++++++||||||.|+-+.+.++|....+-..+..+ .........
T Consensus 129 p~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~e 208 (477)
T KOG0332|consen 129 PQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTE 208 (477)
T ss_pred chhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchh
Confidence 578888999999999998655554 6889999999999999999999999865332222111 112223367
Q ss_pred CEEEEccccc-c--------CCCCeeEEEEecccccccCC-chhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCc
Q psy12699 894 NHVACTVEMT-S--------VNIPYEVAVIDEIQMMRDIT-RGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNED 963 (1269)
Q Consensus 894 ~Ivv~T~e~~-~--------~l~~~~~lViDEah~~~d~~-rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~ 963 (1269)
+|+++||... + .+..++++|+||||.|.|.+ ++..-.++...+++..+.+.++++-.+.+..+....-++
T Consensus 209 qIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn 288 (477)
T KOG0332|consen 209 QIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPN 288 (477)
T ss_pred heeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCC
Confidence 9999998822 2 26789999999999997643 444555666677777888888898888888887553222
Q ss_pred ---eEEEecccCC-c---cccc----ccc----ccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhh
Q psy12699 964 ---VEVYKYKRLT-E---LQIE----DSA----VGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTT 1027 (1269)
Q Consensus 964 ---~~v~~~~r~~-~---l~~~----~~~----~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~ 1027 (1269)
+.++..+-.. + +... +.. .+....+.-|+.++|+ +++.+..++..+.+.|+.
T Consensus 289 ~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~------------ 356 (477)
T KOG0332|consen 289 ANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ------------ 356 (477)
T ss_pred CceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce------------
Confidence 2222211111 0 0000 000 1112223446777777 999999999999888776
Q ss_pred HHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccc
Q psy12699 1028 KLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLN 1107 (1269)
Q Consensus 1028 r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GID 1107 (1269)
|..+||.|..++|..+++.|| .|+.+|||+||+++||||
T Consensus 357 ---------------------------------------V~~l~G~l~~~~R~~ii~~Fr--~g~~kVLitTnV~ARGiD 395 (477)
T KOG0332|consen 357 ---------------------------------------VSLLHGDLTVEQRAAIIDRFR--EGKEKVLITTNVCARGID 395 (477)
T ss_pred ---------------------------------------eEEeeccchhHHHHHHHHHHh--cCcceEEEEechhhcccc
Confidence 667788888999999999999 999999999999999999
Q ss_pred c-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1108 L-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1108 i-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+ .|..|||||++.-. .|+ -+.+.|+||+|||||+|++|.++.+.+..
T Consensus 396 v~qVs~VvNydlP~~~---~~~-----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 396 VAQVSVVVNYDLPVKY---TGE-----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred cceEEEEEecCCcccc---CCC-----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 9 99999999984311 132 46899999999999999999987655443
No 39
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.1e-29 Score=319.95 Aligned_cols=285 Identities=17% Similarity=0.141 Sum_probs=191.9
Q ss_pred cCCceEEeccCCCCchHHHHHHHh----cCCcEEEEcchHHHHHHHHHHHh-ccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERFL----SAESGVYCGPLKMLATEVFKKSN-DRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l~----~~~~~lil~Ptr~La~Qi~~~l~-~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
++++++++||||||||.++...++ .+.+++|++|||++|.|+++++. +++..++..+|+..+.+.....+++|+|
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~v 95 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEV 95 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEEE
Confidence 345555555555555555533222 35689999999999999999994 5777777777766555544445789999
Q ss_pred Ecccccc-------CCCCeeEEEEecccc-cccCCchhHHHHHH-hccCcc-eEEEEeecCChHHHHHHHHHcCCceEEE
Q psy12699 898 CTVEMTS-------VNIPYEVAVIDEIQM-MRDITRGWAWTRAL-LGLMAK-EIHVCGEAGAVDLVKAIMMTTNEDVEVY 967 (1269)
Q Consensus 898 ~T~e~~~-------~l~~~~~lViDEah~-~~d~~rg~~~~~~l-l~l~~~-~~~l~~s~~~~~~~~~l~~~~~~~~~v~ 967 (1269)
+|++.+. .+++++++||||+|+ ..+.+.+..+...+ ..+..+ ++.+++++-+...+..++ ++...+.
T Consensus 96 ~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l---~~~~vI~ 172 (819)
T TIGR01970 96 VTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLL---PDAPVVE 172 (819)
T ss_pred ECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHc---CCCcEEE
Confidence 9977332 378999999999996 46655655443333 334444 334444443333333333 2211222
Q ss_pred ecccCCcc--ccccc------------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHh
Q psy12699 968 KYKRLTEL--QIEDS------------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQA 1032 (1269)
Q Consensus 968 ~~~r~~~l--~~~~~------------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~ 1032 (1269)
...+..++ .|... .+..+-.-..|+++||+ ++++++.+++.|++...
T Consensus 173 ~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------------------ 234 (819)
T TIGR01970 173 SEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD------------------ 234 (819)
T ss_pred ecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC------------------
Confidence 22221111 11100 00000011357888888 88888888888864210
Q ss_pred cccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-Cce
Q psy12699 1033 SKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIR 1111 (1269)
Q Consensus 1033 ~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~ 1111 (1269)
.++.+.++||+|++++|+++++.|+ +|+++||||||++|+|||| +|+
T Consensus 235 ------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkVlVATnIAErgItIp~V~ 282 (819)
T TIGR01970 235 ------------------------------SDVLICPLYGELSLAAQDRAIKPDP--QGRRKVVLATNIAETSLTIEGIR 282 (819)
T ss_pred ------------------------------CCcEEEEecCCCCHHHHHHHHhhcc--cCCeEEEEecchHhhcccccCce
Confidence 1234889999999999999999999 9999999999999999999 999
Q ss_pred EEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCccccccCCCC
Q psy12699 1112 RVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1112 ~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p 1161 (1269)
+|||+|..|.. ||+ .|... ..|+|.++|.||+|||||. ++|.|+....+
T Consensus 283 ~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~ 335 (819)
T TIGR01970 283 VVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSE 335 (819)
T ss_pred EEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCH
Confidence 99999998865 666 45443 6799999999999999998 78888555443
No 40
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=6e-30 Score=325.03 Aligned_cols=296 Identities=21% Similarity=0.210 Sum_probs=198.7
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceeeeccCCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
+.+|+|++++||||||||+++..++ ..+++++|++|+|+||.|+++++++ .|.++...+|+...... .....
T Consensus 34 l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~~~~~ 112 (674)
T PRK01172 34 LRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD-FIKRY 112 (674)
T ss_pred HhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh-hhccC
Confidence 4678999999999999999884433 3478999999999999999998865 46778888887543211 12367
Q ss_pred CEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhcc---CcceEEEEeecCChHHHHHHHHHcCC
Q psy12699 894 NHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL---MAKEIHVCGEAGAVDLVKAIMMTTNE 962 (1269)
Q Consensus 894 ~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l---~~~~~~l~~s~~~~~~~~~l~~~~~~ 962 (1269)
+|+|+|||.+. .+.+++++|+||+|+++|.+||..++.++..+ ..+...+..+++. +..+++..+.+.
T Consensus 113 dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl-~n~~~la~wl~~ 191 (674)
T PRK01172 113 DVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATV-SNANELAQWLNA 191 (674)
T ss_pred CEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc-CCHHHHHHHhCC
Confidence 99999998433 26789999999999999999999888775433 2222222223332 223445444332
Q ss_pred ceEEEecccCCccccc----cc------------cccccCC-c-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 963 DVEVYKYKRLTELQIE----DS------------AVGSLDN-I-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 963 ~~~v~~~~r~~~l~~~----~~------------~~~~l~~-~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
.. +....|++|+... .. ....+.. . +.++++||+ ++++++.+++.|.+......... .
T Consensus 192 ~~-~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~--~ 268 (674)
T PRK01172 192 SL-IKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFK--V 268 (674)
T ss_pred Cc-cCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccc--c
Confidence 11 2222233333210 00 0000111 1 345788888 99999999999876432110000 0
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
..+ +.......+.+++.+| +++|||+|++++|+.+++.|+ +|.++|||||++++
T Consensus 269 ~~~----------------------~~~~~~~~L~~~l~~g--v~~~hagl~~~eR~~ve~~f~--~g~i~VLvaT~~la 322 (674)
T PRK01172 269 SSE----------------------NNNVYDDSLNEMLPHG--VAFHHAGLSNEQRRFIEEMFR--NRYIKVIVATPTLA 322 (674)
T ss_pred ccc----------------------ccccccHHHHHHHhcC--EEEecCCCCHHHHHHHHHHHH--cCCCeEEEecchhh
Confidence 000 0000111223344555 899999999999999999999 99999999999999
Q ss_pred cccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc
Q psy12699 1104 MGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1104 ~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
+|+|++.+.||+.+..+++ . ....|.+..+|.||+|||||.|.+
T Consensus 323 ~Gvnipa~~VII~~~~~~~--~---~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 323 AGVNLPARLVIVRDITRYG--N---GGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred ccCCCcceEEEEcCceEeC--C---CCceeCCHHHHHHHhhcCCCCCCC
Confidence 9999977899998886653 1 123589999999999999998854
No 41
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.6e-29 Score=291.10 Aligned_cols=291 Identities=14% Similarity=0.213 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhh
Q psy12699 64 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMV 143 (1269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (1269)
..+.++.|++++++++++||++++. +++|.+++++|++++.+++.+.+..+..+.++.++++++.+++.|++++++..
T Consensus 3 ~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 3 TGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999986 67788899999999988776664433334456678889999999999999999
Q ss_pred hccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHHHHHHHH
Q psy12699 144 FGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNFLTAVN 223 (1269)
Q Consensus 144 ~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~~~~a~~ 223 (1269)
+.|+|++|++++++++++++.|+|++++++++++||++++++++++++++|+++....+.+++..|.+++++|++++++|
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887777778888999999999999999
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-hcc---cch-HHHHHHHHHHHH-HHHHHHHHHH
Q psy12699 224 GVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLE-YEY---LWD-MWFQIQFILSCC-MGFILNYSIM 297 (1269)
Q Consensus 224 ~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~ll~~~v-~~~~~~~~~~ 297 (1269)
.++.|+..+ ..+.+++.+++|+++++++.++|++...++...... ... ... ...+..+++.++ +....+...+
T Consensus 161 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR00817 161 NIFSKKAMT-IKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAF 239 (302)
T ss_pred HHHHHHhhc-cCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999663 236899999999999999999998877654321110 000 011 112222333333 3444555677
Q ss_pred HhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCC
Q psy12699 298 LCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPA 358 (1269)
Q Consensus 298 ~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~ 358 (1269)
.+++++||++++++++++|++++++|+++|||+ ++..+++|+++++.|+++|++.|.+++
T Consensus 240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~-lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK-ISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHccCCchHHHHHhhhhhhheeeeehhhcCCC-CchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999995 599999999999999999998765543
No 42
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.5e-30 Score=318.46 Aligned_cols=330 Identities=19% Similarity=0.213 Sum_probs=238.2
Q ss_pred HHHHHHhhCCCCCcccccccccCC-CCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 755 YLRHAKQMFPHLDCMDDLKKISDL-RNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 755 ~l~~~k~~~p~~~~~~~l~~i~~l-~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+.......|||-+|+||+++|.++ +++.+..|+.| ++||+.|.|||..|+++...+.
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDR-------LiCGDVGFGKTEVAmRAAFkAV--------------- 640 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDR-------LICGDVGFGKTEVAMRAAFKAV--------------- 640 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchh-------eeecCcCCcHHHHHHHHHHHHh---------------
Confidence 445677799999999999999988 44455555555 8999999999999999885553
Q ss_pred CCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccC------CCCCCCEEEEccccc
Q psy12699 834 NSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQG------EEKPANHVACTVEMT 903 (1269)
Q Consensus 834 GsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~ 903 (1269)
..++++.+++||..||+|+++.+++ +.+++..+..-....++. .+...||+|||+.++
T Consensus 641 ------------~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL 708 (1139)
T COG1197 641 ------------MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL 708 (1139)
T ss_pred ------------cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh
Confidence 5688999999999999999988865 444555555433333322 445889999999987
Q ss_pred cC---CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEe---cccCCcccc
Q psy12699 904 SV---NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYK---YKRLTELQI 977 (1269)
Q Consensus 904 ~~---l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~---~~r~~~l~~ 977 (1269)
+. +.+++++||||.|+++- .-...+..+..+.-.+.-++||+|..-.+...--++..+.. ..|..-.++
T Consensus 709 ~kdv~FkdLGLlIIDEEqRFGV-----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 709 SKDVKFKDLGLLIIDEEQRFGV-----KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred CCCcEEecCCeEEEechhhcCc-----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEE
Confidence 73 89999999999999964 44555666655444445566777655444433222333211 111110011
Q ss_pred ----cccccc--ccCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhh
Q psy12699 978 ----EDSAVG--SLDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATD 1049 (1269)
Q Consensus 978 ----~~~~~~--~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~ 1049 (1269)
.+..+. .++.+ +.|++.+.. ..++++++++.|++.-. +.
T Consensus 784 V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP-----------Ea---------------------- 830 (1139)
T COG1197 784 VSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP-----------EA---------------------- 830 (1139)
T ss_pred EecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC-----------ce----------------------
Confidence 011110 12233 334544333 66778888887766322 21
Q ss_pred hhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCc
Q psy12699 1050 AIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGE 1128 (1269)
Q Consensus 1050 ~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~ 1128 (1269)
+|++-||.|+.++-+.++.+|. +|+.+|||||.++|.|||| +++++|..+..++ |
T Consensus 831 ----------------rI~vaHGQM~e~eLE~vM~~F~--~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f-----G- 886 (1139)
T COG1197 831 ----------------RIAVAHGQMRERELEEVMLDFY--NGEYDVLVCTTIIETGIDIPNANTIIIERADKF-----G- 886 (1139)
T ss_pred ----------------EEEEeecCCCHHHHHHHHHHHH--cCCCCEEEEeeeeecCcCCCCCceEEEeccccc-----c-
Confidence 2788899999999999999999 9999999999999999999 9999999998665 4
Q ss_pred cccccCCHhHHHHHhcccCCCCCccccccCCCC--cccccccchhhhh----hhhhHHHhhccCC
Q psy12699 1129 REIDLISVSAALQIAGRAGRFNTHFEKLAGSHP--ALNEKGEREIDLI----SVSAALQIAGRAG 1187 (1269)
Q Consensus 1129 ~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p--~~~~~~~~~~~~~----~~~~~~qia~~~g 1187 (1269)
.++.+|..||+||..+++||.+..+| .+.+..+++++.+ .+++++++|.++-
T Consensus 887 -------LsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DL 944 (1139)
T COG1197 887 -------LAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDL 944 (1139)
T ss_pred -------HHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcch
Confidence 89999999999999999999555554 5677777766666 7999999998654
No 43
>KOG0922|consensus
Probab=99.97 E-value=8.4e-30 Score=296.27 Aligned_cols=281 Identities=22% Similarity=0.314 Sum_probs=210.5
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH-hc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS-ND 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l-~~ 870 (1269)
+++++++.|+||||||+| +||+|.+. +.+. .+++.+.+|+|..|..+++|+ .+
T Consensus 65 ~nqvlIviGeTGsGKSTQ-ipQyL~ea------------G~~~-------------~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQ-IPQYLAEA------------GFAS-------------SGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred HCCEEEEEcCCCCCcccc-HhHHHHhc------------cccc-------------CCcEEeecCchHHHHHHHHHHHHH
Confidence 568899999999999999 99998773 2222 334778999999999999999 46
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccc-------ccCCCCeeEEEEecccccccCCchhHHHHHHhccCc-----
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEM-------TSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA----- 938 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~-------~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~----- 938 (1269)
.|.+.+-.+|+..++++.....++|.+.|-.+ .+.+++|+++|+||||++. ..+++++++.+
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERs------l~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERS------LHTDILLGLLKKILKK 192 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhh------hHHHHHHHHHHHHHhc
Confidence 88889999999999998877799999999543 3469999999999999994 56777766643
Q ss_pred --c-eEEEEeecCChHHHHHHHHHcCCceEEEecccCCcccc--------ccccccc----cCCcCCCCEEEEe-cHHhH
Q psy12699 939 --K-EIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQI--------EDSAVGS----LDNIQPGDCIVCF-SKNDV 1002 (1269)
Q Consensus 939 --~-~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~--------~~~~~~~----l~~~~~g~~iv~~-s~~~~ 1002 (1269)
+ .+.+++++-..+.+.+++..+. .+.+.....++...| .+..+.. ...-++||++||. +++++
T Consensus 193 R~~LklIimSATlda~kfS~yF~~a~-i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNNAP-ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcCCc-eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 1 3455666666666666664421 122222222222222 2222211 2234778999999 99999
Q ss_pred HHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHH
Q psy12699 1003 YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQ 1082 (1269)
Q Consensus 1003 ~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v 1082 (1269)
+.+++.|.+..... +.. ++. -+.++||.||.+++.
T Consensus 272 e~~~~~l~e~~~~~-------~~~---------------~~~---------------------~~lply~aL~~e~Q~-- 306 (674)
T KOG0922|consen 272 EAACELLRERAKSL-------PED---------------CPE---------------------LILPLYGALPSEEQS-- 306 (674)
T ss_pred HHHHHHHHHHhhhc-------ccc---------------Ccc---------------------eeeeecccCCHHHhh--
Confidence 99999998754321 100 000 177899999999999
Q ss_pred hhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCC
Q psy12699 1083 ASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1083 ~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~ 1151 (1269)
+.|. .|.|.+||++|||++|++|+| +|.+|||.|..|.. ||+ .|... ..|+|.++..||.|||||.|.
T Consensus 307 -rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p 380 (674)
T KOG0922|consen 307 -RVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP 380 (674)
T ss_pred -ccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC
Confidence 6677 557999999999999999999 99999999999988 888 56553 889999999999999999654
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=1.5e-29 Score=315.47 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=192.6
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeecc------CCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQ------GEEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~------~~~~~~ 893 (1269)
+++|+|+++++|||+|||++| +.++...+.++|++|+++|+.|+.++++..|.....+.+.....+. ......
T Consensus 37 il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~ 116 (607)
T PRK11057 37 VLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQI 116 (607)
T ss_pred HHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Confidence 478999999999999999999 5555667889999999999999999999998887776665432221 122357
Q ss_pred CEEEEccccccC--------CCCeeEEEEecccccccCCc--hhHHH---HHHhccCcceEEEEeecCChHHHHHHHHHc
Q psy12699 894 NHVACTVEMTSV--------NIPYEVAVIDEIQMMRDITR--GWAWT---RALLGLMAKEIHVCGEAGAVDLVKAIMMTT 960 (1269)
Q Consensus 894 ~Ivv~T~e~~~~--------l~~~~~lViDEah~~~d~~r--g~~~~---~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~ 960 (1269)
+++++|||.+.. ..+++++||||||++.+.+. ...+. .+...++..++..++++.+.....++....
T Consensus 117 ~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l 196 (607)
T PRK11057 117 KLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLL 196 (607)
T ss_pred cEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHh
Confidence 899999995441 45799999999999976432 22222 122223333344333333333233444332
Q ss_pred C--CceE-EEecccCCccccc--c------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhH
Q psy12699 961 N--EDVE-VYKYKRLTELQIE--D------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 961 ~--~~~~-v~~~~r~~~l~~~--~------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r 1028 (1269)
+ ++.. +....|+. +.+. . .....+.....+..+||+ ++++++.+++.|.+.+.
T Consensus 197 ~l~~~~~~~~~~~r~n-l~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~-------------- 261 (607)
T PRK11057 197 GLNDPLIQISSFDRPN-IRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGI-------------- 261 (607)
T ss_pred CCCCeEEEECCCCCCc-ceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCC--------------
Confidence 2 2221 22222221 1110 0 001111222334556666 88888888888866543
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
.+..+||+|++++|+++++.|+ +|+.+|||||++++||||+
T Consensus 262 -------------------------------------~v~~~Ha~l~~~~R~~i~~~F~--~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 262 -------------------------------------SAAAYHAGLDNDVRADVQEAFQ--RDDLQIVVATVAFGMGINK 302 (607)
T ss_pred -------------------------------------CEEEecCCCCHHHHHHHHHHHH--CCCCCEEEEechhhccCCC
Confidence 3788999999999999999999 8999999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|++||++|. |.|.++|+||+|||||.|.+|.++++..|.
T Consensus 303 p~V~~VI~~d~--------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~ 343 (607)
T PRK11057 303 PNVRFVVHFDI--------------PRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (607)
T ss_pred CCcCEEEEeCC--------------CCCHHHHHHHhhhccCCCCCceEEEEeCHH
Confidence 9999999998 889999999999999999999997766665
No 45
>KOG0341|consensus
Probab=99.97 E-value=3.8e-31 Score=284.77 Aligned_cols=274 Identities=19% Similarity=0.136 Sum_probs=203.9
Q ss_pred cccCCceEEeccCCCCchHHHH-----HHHh----------cCCcEEEEcchHHHHHHHHHHHhcc-------CC---Cc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL-----ERFL----------SAESGVYCGPLKMLATEVFKKSNDR-------GT---PC 875 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l-----~~l~----------~~~~~lil~Ptr~La~Qi~~~l~~~-------g~---~v 875 (1269)
+++|+|.+..|-||||||+++. -++. .++-+++++|+||||.|+++-+..+ |. ++
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 5788999999999999988771 1111 1788999999999999999766542 32 56
Q ss_pred eeeecceeeeccCC--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEe
Q psy12699 876 DLITGEEKKFIQGE--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCG 945 (1269)
Q Consensus 876 ~~~~G~~~~~~~~~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~ 945 (1269)
.+..|+....++-+ ..+.+|+|+||..+. .++-.+++.+||||+|.|+++......++..+...++.+++
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF 363 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF 363 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence 77788866554432 237899999998433 27788999999999999999999999999888888899999
Q ss_pred ecCChHHHHHHHHHc-CCceEEEecccCC--------cccccc---ccccccCCcC--CCCEEEEe-cHHhHHHHHHHHH
Q psy12699 946 EAGAVDLVKAIMMTT-NEDVEVYKYKRLT--------ELQIED---SAVGSLDNIQ--PGDCIVCF-SKNDVYTVSRGIE 1010 (1269)
Q Consensus 946 s~~~~~~~~~l~~~~-~~~~~v~~~~r~~--------~l~~~~---~~~~~l~~~~--~g~~iv~~-s~~~~~~l~~~L~ 1010 (1269)
++++...++.++... -.++.+.. .|.- .+.|.. +.+..++.++ ...+++|+ .+.+++.+.++|-
T Consensus 364 SATMP~KIQ~FAkSALVKPvtvNV-GRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLL 442 (610)
T KOG0341|consen 364 SATMPKKIQNFAKSALVKPVTVNV-GRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLL 442 (610)
T ss_pred eccccHHHHHHHHhhcccceEEec-ccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHH
Confidence 999988888888664 33333322 2211 111111 1111122221 12445555 6667777766654
Q ss_pred hcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCC
Q psy12699 1011 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPD 1090 (1269)
Q Consensus 1011 ~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~ 1090 (1269)
-. |..++.+|||-.+++|...++.|+ .
T Consensus 443 lK---------------------------------------------------GVEavaIHGGKDQedR~~ai~afr--~ 469 (610)
T KOG0341|consen 443 LK---------------------------------------------------GVEAVAIHGGKDQEDRHYAIEAFR--A 469 (610)
T ss_pred Hc---------------------------------------------------cceeEEeecCcchhHHHHHHHHHh--c
Confidence 43 445677788888888888889999 9
Q ss_pred CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1091 NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1091 g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|+-+||||||++..|+|+ ++.+|||||+ |-..++|+||+|||||.|+.|.+.++....
T Consensus 470 gkKDVLVATDVASKGLDFp~iqHVINyDM--------------P~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 470 GKKDVLVATDVASKGLDFPDIQHVINYDM--------------PEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred CCCceEEEecchhccCCCccchhhccCCC--------------hHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 999999999999999999 9999999999 889999999999999999999997665443
No 46
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=4.1e-29 Score=315.60 Aligned_cols=286 Identities=17% Similarity=0.160 Sum_probs=191.5
Q ss_pred ccCCceEEeccCCCCchHHHHHHHhc----CCcEEEEcchHHHHHHHHHHHh-ccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERFLS----AESGVYCGPLKMLATEVFKKSN-DRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l~~----~~~~lil~Ptr~La~Qi~~~l~-~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
.++++++++||||||||.++...++. .++++|++|||++|.|+++++. .++.+++..+|+..+.+......++|+
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~ 97 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLE 97 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEE
Confidence 44566666666666666666333332 4589999999999999999994 567767666666555444444467899
Q ss_pred EEcccccc-------CCCCeeEEEEeccccc-ccCCchhHHH-HHHhccCcc-eEEEEeecCChHHHHHHHHHcCCceEE
Q psy12699 897 ACTVEMTS-------VNIPYEVAVIDEIQMM-RDITRGWAWT-RALLGLMAK-EIHVCGEAGAVDLVKAIMMTTNEDVEV 966 (1269)
Q Consensus 897 v~T~e~~~-------~l~~~~~lViDEah~~-~d~~rg~~~~-~~ll~l~~~-~~~l~~s~~~~~~~~~l~~~~~~~~~v 966 (1269)
|+|++.+. .+++++++|+||+|++ .+.+....+. +++..++.+ ++.+++++-+.+.+..+. ++...+
T Consensus 98 v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~---~~~~~I 174 (812)
T PRK11664 98 VVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLL---PDAPVI 174 (812)
T ss_pred EEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhc---CCCCEE
Confidence 99977332 3789999999999985 3333222222 233334444 334444443433333332 222222
Q ss_pred EecccCCccc--cccc------------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHH
Q psy12699 967 YKYKRLTELQ--IEDS------------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQ 1031 (1269)
Q Consensus 967 ~~~~r~~~l~--~~~~------------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~ 1031 (1269)
....+..++. |... .+..+-....|+++||+ ++++++.+++.|++...
T Consensus 175 ~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~----------------- 237 (812)
T PRK11664 175 VSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA----------------- 237 (812)
T ss_pred EecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc-----------------
Confidence 2222222221 1100 00001111357888888 88899999888864210
Q ss_pred hcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-Cc
Q psy12699 1032 ASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SI 1110 (1269)
Q Consensus 1032 ~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v 1110 (1269)
.++.+..+||+|++++|+++++.|+ +|+++||||||++|+|||| +|
T Consensus 238 -------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~--~G~rkVlvATnIAErsLtIp~V 284 (812)
T PRK11664 238 -------------------------------SDVLLCPLYGALSLAEQQKAILPAP--AGRRKVVLATNIAETSLTIEGI 284 (812)
T ss_pred -------------------------------CCceEEEeeCCCCHHHHHHHhcccc--CCCeEEEEecchHHhcccccCc
Confidence 1234788999999999999999999 9999999999999999999 99
Q ss_pred eEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCccccccCCCC
Q psy12699 1111 RRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1111 ~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p 1161 (1269)
++|||+|..|.. ||+ .|..+ ..++|.++|.||+|||||. +.|.|+....+
T Consensus 285 ~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~ 338 (812)
T PRK11664 285 RLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSK 338 (812)
T ss_pred eEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCH
Confidence 999999998865 666 55543 6789999999999999998 68888554443
No 47
>KOG0350|consensus
Probab=99.96 E-value=1.8e-30 Score=289.23 Aligned_cols=295 Identities=17% Similarity=0.142 Sum_probs=170.9
Q ss_pred CCceEEeccCCCCchHHH----HHHHhc----CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccC---
Q psy12699 824 GPLKIHAGPTNSGKTYHA----LERFLS----AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQG--- 888 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~----l~~l~~----~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~--- 888 (1269)
++|+.|.||||||||++| ++.+.. .-|++|++|||+|+.|+++.+.++. ..|...+|..+..+..
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL 262 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQL 262 (620)
T ss_pred CCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHH
Confidence 344555555555555544 222222 4689999999999999999997654 3555566654433221
Q ss_pred CC----CCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--------ce-EEEEee
Q psy12699 889 EE----KPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--------KE-IHVCGE 946 (1269)
Q Consensus 889 ~~----~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--------~~-~~l~~s 946 (1269)
.+ ...||+|+||..+- .+++++++||||||+++|..|+ .|-..+..+.. +. +....+
T Consensus 263 ~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ-~Wl~~v~~~~~~~k~~~~~~nii~~~~~ 341 (620)
T KOG0350|consen 263 ASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ-EWLDTVMSLCKTMKRVACLDNIIRQRQA 341 (620)
T ss_pred hcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH-HHHHHHHHHhCCchhhcChhhhhhhccc
Confidence 11 14599999988332 2889999999999999885443 44333322211 11 111111
Q ss_pred cCChHHHHHHHHHcCCceE-----------------EEecccCCc-cccccccccccCCcCC---CCEEEEecHHhHHHH
Q psy12699 947 AGAVDLVKAIMMTTNEDVE-----------------VYKYKRLTE-LQIEDSAVGSLDNIQP---GDCIVCFSKNDVYTV 1005 (1269)
Q Consensus 947 ~~~~~~~~~l~~~~~~~~~-----------------v~~~~r~~~-l~~~~~~~~~l~~~~~---g~~iv~~s~~~~~~l 1005 (1269)
..+.- ..++....+.... +....-..| +.....+......++. ...+++-.+-....+
T Consensus 342 ~~pt~-~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~ 420 (620)
T KOG0350|consen 342 PQPTV-LSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAV 420 (620)
T ss_pred CCchh-hHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhH
Confidence 11111 1111111011000 000000000 0000000000000111 112222233334444
Q ss_pred HHHHHhcCC-ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhh
Q psy12699 1006 SRGIESRGT-EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQAS 1084 (1269)
Q Consensus 1006 ~~~L~~~~~-~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~ 1084 (1269)
...+..... ++.+...+.+...|+...+. . .+.+...++..+.|+++.+.|.+.++
T Consensus 421 ~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~---------v--------------~~~~~~~~~s~~t~~l~~k~r~k~l~ 477 (620)
T KOG0350|consen 421 YALITSNKLNRTLCFVNSVSSANRLAHVLK---------V--------------EFCSDNFKVSEFTGQLNGKRRYKMLE 477 (620)
T ss_pred HHHHHHhhcceEEEEecchHHHHHHHHHHH---------H--------------HhccccchhhhhhhhhhHHHHHHHHH
Confidence 455555433 33444466666667666633 0 01122233556789999999999999
Q ss_pred hccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCC
Q psy12699 1085 KFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGS 1159 (1269)
Q Consensus 1085 ~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~ 1159 (1269)
+|+ .|.+++|||||+++||+|+ +|+.|||||+ |.+..+|+||+|||||+|+.|+|++..
T Consensus 478 ~f~--~g~i~vLIcSD~laRGiDv~~v~~VINYd~--------------P~~~ktyVHR~GRTARAgq~G~a~tll 537 (620)
T KOG0350|consen 478 KFA--KGDINVLICSDALARGIDVNDVDNVINYDP--------------PASDKTYVHRAGRTARAGQDGYAITLL 537 (620)
T ss_pred HHh--cCCceEEEehhhhhcCCcccccceEeecCC--------------CchhhHHHHhhcccccccCCceEEEee
Confidence 999 9999999999999999999 9999999999 899999999999999999999995543
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=9.3e-29 Score=309.52 Aligned_cols=274 Identities=20% Similarity=0.213 Sum_probs=192.7
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~ 893 (1269)
+++|+|+++++|||+|||++| +.++..++.++|++|+++|+.|+.+++++.|.++..+.++....+.. .....
T Consensus 25 il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~ 104 (591)
T TIGR01389 25 VLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGEL 104 (591)
T ss_pred HHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 478999999999999999999 55566688899999999999999999999999888777764432211 22367
Q ss_pred CEEEEccccccC--------CCCeeEEEEecccccccCC--chhHHHHH---HhccCcceEEEEeecCChHHHHHHHHHc
Q psy12699 894 NHVACTVEMTSV--------NIPYEVAVIDEIQMMRDIT--RGWAWTRA---LLGLMAKEIHVCGEAGAVDLVKAIMMTT 960 (1269)
Q Consensus 894 ~Ivv~T~e~~~~--------l~~~~~lViDEah~~~d~~--rg~~~~~~---ll~l~~~~~~l~~s~~~~~~~~~l~~~~ 960 (1269)
+|+++|||.+.. ..+++++||||||++.+-+ +...+..+ ...++...+..++++.+.....++....
T Consensus 105 ~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l 184 (591)
T TIGR01389 105 KLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELL 184 (591)
T ss_pred CEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHc
Confidence 999999995531 5689999999999997522 22222222 2233333444333333333334454443
Q ss_pred C--CceE-EEecccCCcccccc--------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhH
Q psy12699 961 N--EDVE-VYKYKRLTELQIED--------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 961 ~--~~~~-v~~~~r~~~l~~~~--------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r 1028 (1269)
+ ++.. +....|+. +.+.. .....+.....+..+||+ ++++++.+++.|.+.+
T Consensus 185 ~~~~~~~~~~~~~r~n-l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g--------------- 248 (591)
T TIGR01389 185 RLADANEFITSFDRPN-LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG--------------- 248 (591)
T ss_pred CCCCCCeEecCCCCCC-cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC---------------
Confidence 2 1111 22222221 11110 001111112233455555 7888888887775543
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
+++..|||+|++++|+.+++.|+ +|+++|||||+++++|||+
T Consensus 249 ------------------------------------~~~~~~H~~l~~~~R~~i~~~F~--~g~~~vlVaT~a~~~GID~ 290 (591)
T TIGR01389 249 ------------------------------------ISALAYHAGLSNKVRAENQEDFL--YDDVKVMVATNAFGMGIDK 290 (591)
T ss_pred ------------------------------------CCEEEEECCCCHHHHHHHHHHHH--cCCCcEEEEechhhccCcC
Confidence 33788999999999999999999 9999999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|++||++++ |.|.++|+||+|||||+|+.|.++.+..+.
T Consensus 291 p~v~~VI~~~~--------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~ 331 (591)
T TIGR01389 291 PNVRFVIHYDM--------------PGNLESYYQEAGRAGRDGLPAEAILLYSPA 331 (591)
T ss_pred CCCCEEEEcCC--------------CCCHHHHhhhhccccCCCCCceEEEecCHH
Confidence 9999999998 889999999999999999999996665554
No 49
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=2e-28 Score=301.46 Aligned_cols=300 Identities=18% Similarity=0.093 Sum_probs=185.4
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHH---hcCCcEEEEcchHHHHHHHHHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERF---LSAESGVYCGPLKMLATEVFKK 867 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l---~~~~~~lil~Ptr~La~Qi~~~ 867 (1269)
.+++++++.|+||||||+| +|+||.+..-++.+-.. +..+ ..++++++++||||||.|+.++
T Consensus 177 ~~gkdvIv~A~TGSGKTtq-vPq~l~~~~flf~~l~~--------------l~~~~~~~~~~~ilvt~PrreLa~qi~~~ 241 (675)
T PHA02653 177 ISRKPVVLTGGTGVGKTSQ-VPKLLLWFNYLFGGFDN--------------LDKIDPNFIERPIVLSLPRVALVRLHSIT 241 (675)
T ss_pred HhCCCEEEECCCCCCchhH-HHHHHHHhhhccchhhh--------------hhhcccccCCcEEEEECcHHHHHHHHHHH
Confidence 3567777888888888876 77776552111110000 0000 1246899999999999999999
Q ss_pred Hhc-c------CCCceeeecceeeec-cCCCCCCCEEEEcccc-ccCCCCeeEEEEecccccccCCchhHHHHHHhccCc
Q psy12699 868 SND-R------GTPCDLITGEEKKFI-QGEEKPANHVACTVEM-TSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA 938 (1269)
Q Consensus 868 l~~-~------g~~v~~~~G~~~~~~-~~~~~~~~Ivv~T~e~-~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~ 938 (1269)
+.+ . |.++.+..|+..... .......+|+++|+.+ +..+.+++++||||||++.+.+ ......+..+..
T Consensus 242 i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~ 319 (675)
T PHA02653 242 LLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHID 319 (675)
T ss_pred HHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccch--hHHHHHHHHhhh
Confidence 854 2 334677788754210 1112257899999875 3468999999999999996543 222222222222
Q ss_pred -ceEEEEeecCChHHHHHHHHHcCCceEEEecccC-Cccc--cccc-----------------cccccCC---cCCCCEE
Q psy12699 939 -KEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRL-TELQ--IEDS-----------------AVGSLDN---IQPGDCI 994 (1269)
Q Consensus 939 -~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~-~~l~--~~~~-----------------~~~~l~~---~~~g~~i 994 (1269)
....++.++|..+..+.+....+++..+....+. .++. +... ....+.. ...++++
T Consensus 320 ~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iL 399 (675)
T PHA02653 320 KIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGI 399 (675)
T ss_pred hcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEE
Confidence 2245556666544444444433333333322221 1111 1000 0011111 1235677
Q ss_pred EEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCC
Q psy12699 995 VCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGS 1073 (1269)
Q Consensus 995 v~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~ 1073 (1269)
||+ ++++++.+++.|++.. .++.+.++||+
T Consensus 400 VFlpg~~ei~~l~~~L~~~~-------------------------------------------------~~~~v~~LHG~ 430 (675)
T PHA02653 400 VFVASVSQCEEYKKYLEKRL-------------------------------------------------PIYDFYIIHGK 430 (675)
T ss_pred EEECcHHHHHHHHHHHHhhc-------------------------------------------------CCceEEeccCC
Confidence 777 7888888887776531 02347888999
Q ss_pred CCHHhHHHHhhhc-cCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC
Q psy12699 1074 LPPTTKLAQASKF-NDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1074 l~~~eR~~v~~~F-~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~ 1151 (1269)
|+++ ++.+++| + +|+++||||||++|||||| +|++|||+|..+......|. ..|+|.++|.||+|||||. +
T Consensus 431 Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~--~~~iSkasa~QRaGRAGR~-~ 503 (675)
T PHA02653 431 VPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGK--EMFISKSMRTQRKGRVGRV-S 503 (675)
T ss_pred cCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCc--ccccCHHHHHHhccCcCCC-C
Confidence 9975 3445666 6 7999999999999999999 99999999965532111232 2478999999999999999 7
Q ss_pred ccccccCCCCcc
Q psy12699 1152 HFEKLAGSHPAL 1163 (1269)
Q Consensus 1152 ~g~~~~~~~p~~ 1163 (1269)
+|.|+....++.
T Consensus 504 ~G~c~rLyt~~~ 515 (675)
T PHA02653 504 PGTYVYFYDLDL 515 (675)
T ss_pred CCeEEEEECHHH
Confidence 899966665553
No 50
>KOG0346|consensus
Probab=99.96 E-value=3.5e-29 Score=274.87 Aligned_cols=276 Identities=18% Similarity=0.158 Sum_probs=188.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c---------CCcEEEEcchHHHHHHHHHHHhccCC------Cceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S---------AESGVYCGPLKMLATEVFKKSNDRGT------PCDLITGE 881 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~---------~~~~lil~Ptr~La~Qi~~~l~~~g~------~v~~~~G~ 881 (1269)
+++|||+++.|.||||||.+|+..+. . ++.+++++||||||+|+|..+.++-. ++.-++..
T Consensus 53 aLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~ 132 (569)
T KOG0346|consen 53 ALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASS 132 (569)
T ss_pred hhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 37788888888888888888833322 1 67899999999999999988876422 22222222
Q ss_pred eeeeccC--CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh
Q psy12699 882 EKKFIQG--EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV 950 (1269)
Q Consensus 882 ~~~~~~~--~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~ 950 (1269)
....... -...++|+|+||..+. .+..++++|+||||.++.-++...+..+...+|+.-+.++.+++..
T Consensus 133 ~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~ 212 (569)
T KOG0346|consen 133 MSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLS 212 (569)
T ss_pred cchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhh
Confidence 1111111 1127899999987332 3779999999999999887777788888888987766667777777
Q ss_pred HHHHHHHHH-cCCceEE--EecccCCcccccccc--------------ccccCCcCCCCEEEEe-cHHhHHHHHHHHHhc
Q psy12699 951 DLVKAIMMT-TNEDVEV--YKYKRLTELQIEDSA--------------VGSLDNIQPGDCIVCF-SKNDVYTVSRGIESR 1012 (1269)
Q Consensus 951 ~~~~~l~~~-~~~~~~v--~~~~r~~~l~~~~~~--------------~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~ 1012 (1269)
+.+..+-.. +..++.+ .+.+-+.+-...... +-.++- -.|..++|+ +.+.|+++.-.|+..
T Consensus 213 dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqF 291 (569)
T KOG0346|consen 213 DDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQF 291 (569)
T ss_pred hHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHh
Confidence 777666544 3344443 222222111111000 001111 235555555 888888888888888
Q ss_pred CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCC
Q psy12699 1013 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNP 1092 (1269)
Q Consensus 1013 ~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~ 1092 (1269)
|.+.+++.+.+|...|.+.+ +.|+ .|.
T Consensus 292 GiksciLNseLP~NSR~Hii---------------------------------------------------~QFN--kG~ 318 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHII---------------------------------------------------EQFN--KGL 318 (569)
T ss_pred CcHhhhhcccccccchhhHH---------------------------------------------------HHhh--Ccc
Confidence 88766666666666665555 5555 555
Q ss_pred eeEEEEcC-----------------------------------cccccccc-CceEEEEcCCCCCCcccCCccccccCCH
Q psy12699 1093 CKVMVATD-----------------------------------AIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISV 1136 (1269)
Q Consensus 1093 ~~VLVaTd-----------------------------------v~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 1136 (1269)
++++|||| -.+||||+ +|.+|||+|+ |.+.
T Consensus 319 YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~--------------P~t~ 384 (569)
T KOG0346|consen 319 YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF--------------PETV 384 (569)
T ss_pred eeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC--------------CCch
Confidence 55555555 25799999 9999999999 8999
Q ss_pred hHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1137 SAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1137 ~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
..|+||+|||+|++++|.++.+..|.+.
T Consensus 385 ~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 385 TSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred HHHHHhccccccCCCCCceEEEecchHH
Confidence 9999999999999999999888888744
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=2.1e-28 Score=308.25 Aligned_cols=345 Identities=17% Similarity=0.174 Sum_probs=206.0
Q ss_pred HHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCC
Q psy12699 757 RHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSG 836 (1269)
Q Consensus 757 ~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsG 836 (1269)
+...+.+|+--+..|.+.+.++..... ....+..+++||||||||..|+.+.+.
T Consensus 252 ~~~~~~l~f~lt~~Q~~ai~~I~~d~~------~~~~~~~Ll~~~TGSGKT~va~~~il~-------------------- 305 (681)
T PRK10917 252 KKFLASLPFELTGAQKRVVAEILADLA------SPKPMNRLLQGDVGSGKTVVAALAALA-------------------- 305 (681)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhh------ccCCceEEEECCCCCcHHHHHHHHHHH--------------------
Confidence 334456787777777777766532111 011123466777777777765544422
Q ss_pred chHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC------CCCCCCEEEEccccccC-
Q psy12699 837 KTYHALERFLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG------EEKPANHVACTVEMTSV- 905 (1269)
Q Consensus 837 KTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~~~- 905 (1269)
++.++.+++|++||++||.|++++++++ |.++.+++|+....+.. ....++|+|||++.+..
T Consensus 306 -------~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~ 378 (681)
T PRK10917 306 -------AIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD 378 (681)
T ss_pred -------HHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc
Confidence 2245789999999999999999998753 57889999986532211 23368999999986653
Q ss_pred --CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEecccCCcccccccccc
Q psy12699 906 --NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVG 983 (1269)
Q Consensus 906 --l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~~ 983 (1269)
+.+++++||||+|+++..+|. .+.........+..++|+.+....+......++.... +.+.. ..
T Consensus 379 v~~~~l~lvVIDE~Hrfg~~qr~-----~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~-~~p~~----r~--- 445 (681)
T PRK10917 379 VEFHNLGLVIIDEQHRFGVEQRL-----ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVID-ELPPG----RK--- 445 (681)
T ss_pred chhcccceEEEechhhhhHHHHH-----HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEe-cCCCC----CC---
Confidence 789999999999998654333 2222222233455666665543333221111111111 00000 00
Q ss_pred ccCCcCCCCEEEEe-cHHhH-HHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccc
Q psy12699 984 SLDNIQPGDCIVCF-SKNDV-YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIE 1061 (1269)
Q Consensus 984 ~l~~~~~g~~iv~~-s~~~~-~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~ 1061 (1269)
.+ ...++.. .++.+ +.+.+.+ +.+.++.+++......+..... . +.+.. ..+....
T Consensus 446 ~i-----~~~~~~~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~~l~~~--------~-----~~~~~---~~L~~~~ 503 (681)
T PRK10917 446 PI-----TTVVIPDSRRDEVYERIREEI-AKGRQAYVVCPLIEESEKLDLQ--------S-----AEETY---EELQEAF 503 (681)
T ss_pred Cc-----EEEEeCcccHHHHHHHHHHHH-HcCCcEEEEEcccccccchhHH--------H-----HHHHH---HHHHHHC
Confidence 00 0011111 22222 2233333 4455666666433221110000 0 00000 0000000
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
.++++..+||+|++++|++++++|+ +|+.+|||||+++++|+|+ ++++||+++.+++ ..++++
T Consensus 504 -~~~~v~~lHG~m~~~eR~~i~~~F~--~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~-------------gls~lh 567 (681)
T PRK10917 504 -PELRVGLLHGRMKPAEKDAVMAAFK--AGEIDILVATTVIEVGVDVPNATVMVIENAERF-------------GLAQLH 567 (681)
T ss_pred -CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEECcceeeCcccCCCcEEEEeCCCCC-------------CHHHHH
Confidence 1256999999999999999999999 9999999999999999999 9999999998433 478999
Q ss_pred HHhcccCCCCCccccccCCCCcccccccchhhhh-hhhhHHHhhcc
Q psy12699 1141 QIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLI-SVSAALQIAGR 1185 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~-~~~~~~qia~~ 1185 (1269)
||+||+||.|++|+|++..+...++....+++.+ +...++.||..
T Consensus 568 Q~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~ 613 (681)
T PRK10917 568 QLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEK 613 (681)
T ss_pred HHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999997776433333344444444 34556666553
No 52
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=1.2e-28 Score=314.50 Aligned_cols=312 Identities=22% Similarity=0.213 Sum_probs=202.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h-cCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L-SAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~-~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+.+|+|+++++|||||||+++..++ . .+.+++|++|+|+|+.|+++++++ .|.++...+|+.....+ ....
T Consensus 36 ~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~-~~~~ 114 (720)
T PRK00254 36 VLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE-WLGK 114 (720)
T ss_pred HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh-hhcc
Confidence 5789999999999999999983332 2 378999999999999999988864 46788889998543221 1236
Q ss_pred CCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCce
Q psy12699 893 ANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDV 964 (1269)
Q Consensus 893 ~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~ 964 (1269)
++|+|+|||.+. .+++++++|+||+|++++.+||..++.++..+..+...+..+++.. ..+++..+.+...
T Consensus 115 ~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~-n~~~la~wl~~~~ 193 (720)
T PRK00254 115 YDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG-NAEELAEWLNAEL 193 (720)
T ss_pred CCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC-CHHHHHHHhCCcc
Confidence 899999998543 3678999999999999999999999988877755433333333322 2344444433221
Q ss_pred EEEecccCCccccc----------cccc--------ccc-CCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 965 EVYKYKRLTELQIE----------DSAV--------GSL-DNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 965 ~v~~~~r~~~l~~~----------~~~~--------~~l-~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
+....|++++... +... ..+ +.+ ..++++||+ +++.++.++..+.+...... ..
T Consensus 194 -~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~----~~ 268 (720)
T PRK00254 194 -VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFL----TK 268 (720)
T ss_pred -ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhc----Cc
Confidence 2222333333110 0000 000 111 234777777 99999998888865422100 00
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
+.........+..+. ......+...+..| |++|||+|++++|+.+++.|+ +|.++|||||++++
T Consensus 269 ~~~~~~~~~~~~~~~------------~~~~~~L~~~l~~g--v~~hHagl~~~eR~~ve~~F~--~G~i~VLvaT~tLa 332 (720)
T PRK00254 269 PELRALKELADSLEE------------NPTNEKLKKALRGG--VAFHHAGLGRTERVLIEDAFR--EGLIKVITATPTLS 332 (720)
T ss_pred hhHHHHHHHHHHHhc------------CCCcHHHHHHHhhC--EEEeCCCCCHHHHHHHHHHHH--CCCCeEEEeCcHHh
Confidence 110111111000000 00011122333444 999999999999999999999 99999999999999
Q ss_pred cccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC--CccccccCCC
Q psy12699 1104 MGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN--THFEKLAGSH 1160 (1269)
Q Consensus 1104 ~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G--~~g~~~~~~~ 1160 (1269)
+|+|++...||..+..+++ ..| ..+.+..+|.||+|||||.| ..|.++....
T Consensus 333 ~Gvnipa~~vVI~~~~~~~--~~~---~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 333 AGINLPAFRVIIRDTKRYS--NFG---WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred hhcCCCceEEEECCceEcC--CCC---ceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 9999966666666654442 112 23567899999999999976 4577755543
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=4.2e-28 Score=312.49 Aligned_cols=269 Identities=20% Similarity=0.277 Sum_probs=177.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h---------cCCcEEEEcchHHHHHHHHHHHhc-----------c-----
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L---------SAESGVYCGPLKMLATEVFKKSND-----------R----- 871 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~---------~~~~~lil~Ptr~La~Qi~~~l~~-----------~----- 871 (1269)
+++|+|++++||||||||++|+..+ . .+.+++|++|||+|++|+++++.+ .
T Consensus 44 il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~ 123 (876)
T PRK13767 44 IHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELP 123 (876)
T ss_pred HHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 4678999999999999999883322 2 134699999999999999876541 1
Q ss_pred CCCceeeecceeeeccC--CCCCCCEEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhcc---
Q psy12699 872 GTPCDLITGEEKKFIQG--EEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL--- 936 (1269)
Q Consensus 872 g~~v~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l--- 936 (1269)
+.++.+.+|+....++. ....++|+|+|||.+. .+.+++++|+||+|++.+..||..+...+..+
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 34567788886543322 1236899999999543 26789999999999999988998776554322
Q ss_pred C-cceEEEEeecCC--hHHHHHHHHHc-----CCceEEEec--ccCCccccccc---------------cccccCC-c-C
Q psy12699 937 M-AKEIHVCGEAGA--VDLVKAIMMTT-----NEDVEVYKY--KRLTELQIEDS---------------AVGSLDN-I-Q 989 (1269)
Q Consensus 937 ~-~~~~~l~~s~~~--~~~~~~l~~~~-----~~~~~v~~~--~r~~~l~~~~~---------------~~~~l~~-~-~ 989 (1269)
. ...+.+..+++. .+.+..+.... ..++.+... .+..++..... ....+.. + +
T Consensus 204 ~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~ 283 (876)
T PRK13767 204 AGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE 283 (876)
T ss_pred cCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhc
Confidence 2 222333333332 22232222111 122222211 11111110000 0000100 1 2
Q ss_pred CCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeE
Q psy12699 990 PGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVA 1068 (1269)
Q Consensus 990 ~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~ 1068 (1269)
.++++||+ +++.++.++..|.+..... ..+..+.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~---------------------------------------------~~~~~i~ 318 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEE---------------------------------------------YDEDNIG 318 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhh---------------------------------------------cccccee
Confidence 34566666 7777877777775421100 0122488
Q ss_pred EEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccC
Q psy12699 1069 VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAG 1147 (1269)
Q Consensus 1069 ~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaG 1147 (1269)
.|||+|++++|..+++.|+ +|+++|||||+++++|||+ ++++||+++. |.+.++|+||+||||
T Consensus 319 ~hHg~ls~~~R~~ve~~fk--~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~--------------P~sv~~ylQRiGRaG 382 (876)
T PRK13767 319 AHHSSLSREVRLEVEEKLK--RGELKVVVSSTSLELGIDIGYIDLVVLLGS--------------PKSVSRLLQRIGRAG 382 (876)
T ss_pred eeeCCCCHHHHHHHHHHHH--cCCCeEEEECChHHhcCCCCCCcEEEEeCC--------------CCCHHHHHHhcccCC
Confidence 9999999999999999999 9999999999999999999 9999999998 889999999999999
Q ss_pred CCC
Q psy12699 1148 RFN 1150 (1269)
Q Consensus 1148 R~G 1150 (1269)
|.+
T Consensus 383 R~~ 385 (876)
T PRK13767 383 HRL 385 (876)
T ss_pred CCC
Confidence 864
No 54
>KOG0952|consensus
Probab=99.96 E-value=3.1e-28 Score=291.89 Aligned_cols=292 Identities=20% Similarity=0.231 Sum_probs=217.8
Q ss_pred ccCCceEEeccCCCCchHHHHHHHhc--------------CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeeccee
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERFLS--------------AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEK 883 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l~~--------------~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~ 883 (1269)
-++.|.++|||||||||.+|+.++++ +-+++|++|+|+||.++++.+.+ +|.+|..+||+..
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~q 203 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQ 203 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcch
Confidence 45789999999999999999544432 56899999999999999988754 5789999999976
Q ss_pred eeccCCCCCCCEEEEccccccC-----------CCCeeEEEEecccccccCCchhHHHHHHhcc------CcceEEEEee
Q psy12699 884 KFIQGEEKPANHVACTVEMTSV-----------NIPYEVAVIDEIQMMRDITRGWAWTRALLGL------MAKEIHVCGE 946 (1269)
Q Consensus 884 ~~~~~~~~~~~Ivv~T~e~~~~-----------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l------~~~~~~l~~s 946 (1269)
....+ -..++|+|.|||..+. .+.++++||||+|.+- +.||...+.++.+. ....+++++-
T Consensus 204 l~~te-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh-d~RGpvlEtiVaRtlr~vessqs~IRivgL 281 (1230)
T KOG0952|consen 204 LTKTE-IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH-DDRGPVLETIVARTLRLVESSQSMIRIVGL 281 (1230)
T ss_pred hhHHH-HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc-CcccchHHHHHHHHHHHHHhhhhheEEEEe
Confidence 54433 4589999999997762 6789999999999995 47999987776443 3456788888
Q ss_pred cCChHHHHHHHHHcCCc-----eEEEecccCCcccccccccc------------------ccCCcCCC-CEEEEe-cHHh
Q psy12699 947 AGAVDLVKAIMMTTNED-----VEVYKYKRLTELQIEDSAVG------------------SLDNIQPG-DCIVCF-SKND 1001 (1269)
Q Consensus 947 ~~~~~~~~~l~~~~~~~-----~~v~~~~r~~~l~~~~~~~~------------------~l~~~~~g-~~iv~~-s~~~ 1001 (1269)
.+..|+..+++.+.+-+ +.+....|++|+........ ..+.+..| +++||+ +|++
T Consensus 282 SATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 282 SATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred eccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 88888888888776543 22556667777754321100 01112344 777777 8999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHH
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLA 1081 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~ 1081 (1269)
+.+.|+.|.+........-... +..|++++ .++.+.| .++||+||..++|..
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~-~~~~~k~l-------------------------~elf~~g--~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFL-PSPRNKQL-------------------------KELFQQG--MGIHHAGMLRSDRQL 413 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccC-CChhhHHH-------------------------HHHHHhh--hhhcccccchhhHHH
Confidence 9999988877543322111111 11233333 2344455 789999999999999
Q ss_pred HhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCC
Q psy12699 1082 QASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148 (1269)
Q Consensus 1082 v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR 1148 (1269)
+++.|. .|.++||+||.+++.|+|+++..||.-|.+.|++.+ |. +...+..+.+|..|||||
T Consensus 414 ~E~~F~--~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydssk-g~--f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 414 VEKEFK--EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSK-GS--FVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred HHHHHh--cCCceEEEecceeeeccCCcceEEEecCCccccccc-Cc--eeeehHHHHHHHHhccCC
Confidence 999999 999999999999999999999999999987665332 32 456788999999999999
No 55
>KOG0347|consensus
Probab=99.96 E-value=4.2e-29 Score=280.64 Aligned_cols=293 Identities=19% Similarity=0.143 Sum_probs=188.2
Q ss_pred cccCc-eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCc--EEEEcchHHHHHHHH
Q psy12699 789 RSISR-RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAES--GVYCGPLKMLATEVF 865 (1269)
Q Consensus 789 ~~~~r-~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~--~lil~Ptr~La~Qi~ 865 (1269)
..+++ .|++..++||||||.++=-+++... + -.||-+-.--..-.+.++ +||++||||||.|+.
T Consensus 214 ~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l---~----------~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 214 AAIRGKVDILGAAETGSGKTLAFGIPIVERL---L----------ESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred HhhccchhcccccccCCCceeeecchhhhhh---h----------hccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 33443 7888888888888887533332211 0 001111110000122455 999999999999999
Q ss_pred HHHhc----cCCCceeeecceeeeccC--CCCCCCEEEEcccccc-----------CCCCeeEEEEecccccccCCchhH
Q psy12699 866 KKSND----RGTPCDLITGEEKKFIQG--EEKPANHVACTVEMTS-----------VNIPYEVAVIDEIQMMRDITRGWA 928 (1269)
Q Consensus 866 ~~l~~----~g~~v~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~~-----------~l~~~~~lViDEah~~~d~~rg~~ 928 (1269)
+.+.. -++++..++||.....|. -+..++|+|+||+.+. .+.+++++|+||+|+|.+.+.-..
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~E 360 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEE 360 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHH
Confidence 88864 356788899986655443 2337999999987442 378999999999999987776666
Q ss_pred HHHHHhccC-----cceEEEEeecCChH-H--------------------HHHHHHHc---CCceEEEecccCCc-----
Q psy12699 929 WTRALLGLM-----AKEIHVCGEAGAVD-L--------------------VKAIMMTT---NEDVEVYKYKRLTE----- 974 (1269)
Q Consensus 929 ~~~~ll~l~-----~~~~~l~~s~~~~~-~--------------------~~~l~~~~---~~~~~v~~~~r~~~----- 974 (1269)
++.++..+. .+++.++++++..- . ++.+.... +.+ .+....+...
T Consensus 361 ls~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp-kiiD~t~q~~ta~~l 439 (731)
T KOG0347|consen 361 LSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP-KIIDLTPQSATASTL 439 (731)
T ss_pred HHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC-eeEecCcchhHHHHH
Confidence 677765553 23455555554321 0 11111111 111 1111111000
Q ss_pred --cccccc-------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccc
Q psy12699 975 --LQIEDS-------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1044 (1269)
Q Consensus 975 --l~~~~~-------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~ 1044 (1269)
-..... ....+.. -+|..+||+ +.+.+.++.-.|...
T Consensus 440 ~Es~I~C~~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L-------------------------------- 486 (731)
T KOG0347|consen 440 TESLIECPPLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNL-------------------------------- 486 (731)
T ss_pred HHHhhcCCccccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhc--------------------------------
Confidence 000000 0000111 344444444 555555555554433
Q ss_pred hhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCc
Q psy12699 1045 MVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSL 1123 (1269)
Q Consensus 1045 l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~ 1123 (1269)
+++..++|+.|.+++|.+.+++|+ +..-.||||||+++||+|| +|.|||+|..
T Consensus 487 -------------------~i~p~~LHA~M~QKqRLknLEkF~--~~~~~VLiaTDVAARGLDIp~V~HVIHYqV----- 540 (731)
T KOG0347|consen 487 -------------------DIPPLPLHASMIQKQRLKNLEKFK--QSPSGVLIATDVAARGLDIPGVQHVIHYQV----- 540 (731)
T ss_pred -------------------CCCCchhhHHHHHHHHHHhHHHHh--cCCCeEEEeehhhhccCCCCCcceEEEeec-----
Confidence 344678899999999999999999 7888999999999999999 9999999998
Q ss_pred ccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcc
Q psy12699 1124 NEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPAL 1163 (1269)
Q Consensus 1124 ~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~ 1163 (1269)
|.+.+-|+||.|||+|++++|..+....|++
T Consensus 541 ---------PrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 541 ---------PRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred ---------CCccceeEecccccccccCCCeEEEEeChHH
Confidence 8889999999999999999999877777763
No 56
>KOG0334|consensus
Probab=99.96 E-value=8.7e-29 Score=300.43 Aligned_cols=280 Identities=19% Similarity=0.206 Sum_probs=208.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc------------CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS------------AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~------------~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~ 884 (1269)
+++|+|+|.+|.||||||+.|+..++. ++-++|++||||||.|+++.++. .++.+..++|+...
T Consensus 399 ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~ 478 (997)
T KOG0334|consen 399 IMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGI 478 (997)
T ss_pred hccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccH
Confidence 378888888888888888888433332 78899999999999999988865 46678888898766
Q ss_pred eccCC--CCCCCEEEEccc-ccc----------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChH
Q psy12699 885 FIQGE--EKPANHVACTVE-MTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD 951 (1269)
Q Consensus 885 ~~~~~--~~~~~Ivv~T~e-~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~ 951 (1269)
..+.. ..++.|+||||. +++ .+.++.++|+||||+|.|+++.+....++..+.+..++++++++-..
T Consensus 479 ~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr 558 (997)
T KOG0334|consen 479 SQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPR 558 (997)
T ss_pred HHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhH
Confidence 55542 226999999987 333 26677799999999999999999999999999888888888877766
Q ss_pred HHHHHHHH-cCCceEEEecccCC-----ccccc-----cc----cccccC-CcCCCCEEEEe-cHHhHHHHHHHHHhcCC
Q psy12699 952 LVKAIMMT-TNEDVEVYKYKRLT-----ELQIE-----DS----AVGSLD-NIQPGDCIVCF-SKNDVYTVSRGIESRGT 1014 (1269)
Q Consensus 952 ~~~~l~~~-~~~~~~v~~~~r~~-----~l~~~-----~~----~~~~l~-~~~~g~~iv~~-s~~~~~~l~~~L~~~~~ 1014 (1269)
.+..++.. ...++++....+-+ ...+. .. ..+.+. ....+..+||+ ++..|+.+.+.|.+.+.
T Consensus 559 ~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~ 638 (997)
T KOG0334|consen 559 SMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY 638 (997)
T ss_pred HHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc
Confidence 67776643 22444432211110 00000 00 000010 11345666666 66667777777665544
Q ss_pred ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCee
Q psy12699 1015 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK 1094 (1269)
Q Consensus 1015 ~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~ 1094 (1269)
. +..+||+.++.+|..+++.|+ ++.++
T Consensus 639 ~---------------------------------------------------~~slHGgv~q~dR~sti~dfK--~~~~~ 665 (997)
T KOG0334|consen 639 N---------------------------------------------------CDSLHGGVDQHDRSSTIEDFK--NGVVN 665 (997)
T ss_pred c---------------------------------------------------hhhhcCCCchHHHHhHHHHHh--ccCce
Confidence 3 444799999999999999999 99999
Q ss_pred EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcccccc
Q psy12699 1095 VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKG 1167 (1269)
Q Consensus 1095 VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~ 1167 (1269)
+||||++++||+|+ ++..||||+. |-..++|+||.|||||+|++|.|+++..|+...+.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~--------------pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a 725 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDF--------------PNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYA 725 (997)
T ss_pred EEEehhhhhcccccccceEEEEccc--------------chhHHHHHHHhcccccCCccceeEEEeChHHhhhH
Confidence 99999999999999 9999999999 66788999999999999999999999988544443
No 57
>KOG0344|consensus
Probab=99.96 E-value=1.5e-28 Score=281.62 Aligned_cols=286 Identities=16% Similarity=0.138 Sum_probs=183.2
Q ss_pred ccCCceEEeccCCCCchHHHHH----HHh--------cCCcEEEEcchHHHHHHHHHHHhccCCC------ceeeeccee
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALE----RFL--------SAESGVYCGPLKMLATEVFKKSNDRGTP------CDLITGEEK 883 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~----~l~--------~~~~~lil~Ptr~La~Qi~~~l~~~g~~------v~~~~G~~~ 883 (1269)
++++|++.|+|||||||+++.. .+. .+-+++|+.|||+||.|+++++.++..+ .........
T Consensus 171 l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~ 250 (593)
T KOG0344|consen 171 LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAY 250 (593)
T ss_pred hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccc
Confidence 4456666666666666666511 111 1568999999999999999999876632 111111100
Q ss_pred eeccC----CCCCCCEEEEcccccc----------CCCCeeEEEEecccccccC-CchhHHHHHHhccCcceEEE-Eeec
Q psy12699 884 KFIQG----EEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDI-TRGWAWTRALLGLMAKEIHV-CGEA 947 (1269)
Q Consensus 884 ~~~~~----~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~-~rg~~~~~~ll~l~~~~~~l-~~s~ 947 (1269)
. .+. ....+++++.||-.+- .+.++.++|+||+|++.++ .+-....+++..+..+.+++ ++++
T Consensus 251 ~-~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSa 329 (593)
T KOG0344|consen 251 P-SQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSA 329 (593)
T ss_pred h-hhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhc
Confidence 0 010 1125789999975211 2789999999999999887 55556677777776655543 3556
Q ss_pred CChHHHHHHHHHcCCc-eEEEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCce-EEEeCCCC
Q psy12699 948 GAVDLVKAIMMTTNED-VEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEV-AVIYGSLP 1024 (1269)
Q Consensus 948 ~~~~~~~~l~~~~~~~-~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~-~~i~g~l~ 1024 (1269)
+....+++++...-.. ..+....+... ...+. +-++|+ +.....-..+.+-..|.+. ..++ ..
T Consensus 330 t~~~~VEE~~~~i~~~~~~vivg~~~sa----------~~~V~--QelvF~gse~~K~lA~rq~v~~g~~PP~lIf--VQ 395 (593)
T KOG0344|consen 330 TISVYVEEWAELIKSDLKRVIVGLRNSA----------NETVD--QELVFCGSEKGKLLALRQLVASGFKPPVLIF--VQ 395 (593)
T ss_pred cccHHHHHHHHHhhccceeEEEecchhH----------hhhhh--hhheeeecchhHHHHHHHHHhccCCCCeEEE--Ee
Confidence 6667788887654322 22332222211 11111 122333 2222222222333333211 1111 00
Q ss_pred hhhHHHHhcccCCCCCCccchhhhhhhccCcccccc-ccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1025 PTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGI-ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1025 ~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l-~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
..+|-.++ ++.| .-.++.+.++||..++.+|++++++|| .|+++||+|||+++
T Consensus 396 s~eRak~L------------------------~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicTdll~ 449 (593)
T KOG0344|consen 396 SKERAKQL------------------------FEELEIYDNINVDVIHGERSQKQRDETMERFR--IGKIWVLICTDLLA 449 (593)
T ss_pred cHHHHHHH------------------------HHHhhhccCcceeeEecccchhHHHHHHHHHh--ccCeeEEEehhhhh
Confidence 11222222 1122 234667999999999999999999999 99999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||+|+ +|+.|||||+ |.+..+|+||+||+||+|+.|.|++++..+
T Consensus 450 RGiDf~gvn~VInyD~--------------p~s~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 450 RGIDFKGVNLVINYDF--------------PQSDLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred ccccccCcceEEecCC--------------CchhHHHHHHhhccCCCCCCcceEEEeccc
Confidence 99999 9999999999 788999999999999999999998887664
No 58
>KOG0923|consensus
Probab=99.95 E-value=7.4e-28 Score=275.35 Aligned_cols=284 Identities=22% Similarity=0.277 Sum_probs=205.2
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH-hc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS-ND 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l-~~ 870 (1269)
.++++++.|+||||||+| +||+|.+. |=| ..++++-+.+|+|..|..++.|+ ++
T Consensus 279 e~QVLiI~GeTGSGKTTQ-iPQyL~Ea-----------------Gyt-------k~gk~IgcTQPRRVAAmSVAaRVA~E 333 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQ-IPQYLYEA-----------------GYT-------KGGKKIGCTQPRRVAAMSVAARVAEE 333 (902)
T ss_pred hCcEEEEEcCCCCCcccc-ccHHHHhc-----------------ccc-------cCCceEeecCcchHHHHHHHHHHHHH
Confidence 578999999999999999 99998874 211 22445778889999999999998 56
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccccccCCchhHHHHHHhccCc-----
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA----- 938 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~----- 938 (1269)
+|.+.+--+|+..++++.....+-|-++|-+|+. .+.+|+++||||||++. ..+++|.++-+
T Consensus 334 MgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERT------L~TDILfgLvKDIar~ 407 (902)
T KOG0923|consen 334 MGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERT------LHTDILFGLVKDIARF 407 (902)
T ss_pred hCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhh------hhhhHHHHHHHHHHhh
Confidence 8999888999999998887778889999977553 48899999999999983 44566655532
Q ss_pred --ce-EEEEeecCChHHHHHHHHHcCCceEEEecccCCcc--------ccccccccccCC----cCCCCEEEEe-cHHhH
Q psy12699 939 --KE-IHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTEL--------QIEDSAVGSLDN----IQPGDCIVCF-SKNDV 1002 (1269)
Q Consensus 939 --~~-~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l--------~~~~~~~~~l~~----~~~g~~iv~~-s~~~~ 1002 (1269)
+- +++++++...+.+..+++... -+.+.....++.+ .|.+..+..+.. -+.||++||. .++++
T Consensus 408 RpdLKllIsSAT~DAekFS~fFDdap-IF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEI 486 (902)
T KOG0923|consen 408 RPDLKLLISSATMDAEKFSAFFDDAP-IFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEI 486 (902)
T ss_pred CCcceEEeeccccCHHHHHHhccCCc-EEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHH
Confidence 22 233344444444555543211 1111111112222 222222222222 2558999998 88888
Q ss_pred HHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHH
Q psy12699 1003 YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQ 1082 (1269)
Q Consensus 1003 ~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v 1082 (1269)
+...+.|.+.... + ......+ -+.++|+.||.+.+.
T Consensus 487 Et~~e~l~~~~~~----------------L------Gski~el--------------------iv~PiYaNLPselQa-- 522 (902)
T KOG0923|consen 487 ETVKENLKERCRR----------------L------GSKIREL--------------------IVLPIYANLPSELQA-- 522 (902)
T ss_pred HHHHHHHHHHHHH----------------h------ccccceE--------------------EEeeccccCChHHHH--
Confidence 8888777653221 0 0011122 278899999999999
Q ss_pred hhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCc
Q psy12699 1083 ASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1083 ~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
+-|. .|+|.++|++|||+++++|+| +|.+||+.|..|.+ ||+ .|..+ ..|+|.++..||+|||||.|..
T Consensus 523 -kIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG 597 (902)
T KOG0923|consen 523 -KIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG 597 (902)
T ss_pred -hhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC
Confidence 5555 568999999999999999999 99999999999988 888 67765 8899999999999999999875
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1e-27 Score=284.23 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=203.6
Q ss_pred ccccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKP 892 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~ 892 (1269)
.+++|+|+++..|||.||++|| +.++...+-+|++.|..+|.....+.++..|++...+.+.....+.. ..+.
T Consensus 28 ~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~ 107 (590)
T COG0514 28 ALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQ 107 (590)
T ss_pred HHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCc
Confidence 3588999999999999999999 78888888999999999999999999999998777666653332222 2335
Q ss_pred CCEEEEccccccC--------CCCeeEEEEecccccccCCchhHHHHH-------HhccCcceEEEEeecCChHHHHHHH
Q psy12699 893 ANHVACTVEMTSV--------NIPYEVAVIDEIQMMRDITRGWAWTRA-------LLGLMAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 893 ~~Ivv~T~e~~~~--------l~~~~~lViDEah~~~d~~rg~~~~~~-------ll~l~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
.++++-+||.+.. ..++.++||||||++++ +|+++... ...++...++.+.++.+.....++.
T Consensus 108 ~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq--WGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~ 185 (590)
T COG0514 108 LKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ--WGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIR 185 (590)
T ss_pred eeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh--cCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHH
Confidence 7999999996652 45899999999999964 55554322 2344433444443344444445555
Q ss_pred HHcC--C-ceEEEecccCCccccc--cc--ccc---ccC---CcCCC-CEEEEecHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 958 MTTN--E-DVEVYKYKRLTELQIE--DS--AVG---SLD---NIQPG-DCIVCFSKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 958 ~~~~--~-~~~v~~~~r~~~l~~~--~~--~~~---~l~---~~~~g-~~iv~~s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
...+ . ...+....|+. +.+. .. ... -+. ....+ .+|.|.||++++.+++.|.+.|.+
T Consensus 186 ~~L~l~~~~~~~~sfdRpN-i~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-------- 256 (590)
T COG0514 186 EQLGLQDANIFRGSFDRPN-LALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS-------- 256 (590)
T ss_pred HHhcCCCcceEEecCCCch-hhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCc--------
Confidence 4432 1 23344444442 1111 00 000 111 11222 455556999999999999877654
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
+..|||||+.++|+.++++|. +++.+|+|||.+++
T Consensus 257 -------------------------------------------a~~YHaGl~~~eR~~~q~~f~--~~~~~iiVAT~AFG 291 (590)
T COG0514 257 -------------------------------------------AGAYHAGLSNEERERVQQAFL--NDEIKVMVATNAFG 291 (590)
T ss_pred -------------------------------------------eEEecCCCCHHHHHHHHHHHh--cCCCcEEEEecccc
Confidence 788999999999999999999 99999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPAL 1163 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~ 1163 (1269)
||||. ||++|||+++ |.|.++|+|.+|||||+|...+|++...|+.
T Consensus 292 MGIdKpdVRfViH~~l--------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 292 MGIDKPDVRFVIHYDL--------------PGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred CccCCCCceEEEEecC--------------CCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 99999 9999999999 8999999999999999999999977777764
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=5.6e-28 Score=302.57 Aligned_cols=317 Identities=17% Similarity=0.154 Sum_probs=186.8
Q ss_pred HHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCch
Q psy12699 759 AKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKT 838 (1269)
Q Consensus 759 ~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKT 838 (1269)
..+.+|+--+..|.+.+.++..... ..+. ...+++||||||||..|+.+++.
T Consensus 228 ~~~~lpf~lt~~Q~~ai~~I~~~~~---~~~~---~~~Ll~g~TGSGKT~va~l~il~---------------------- 279 (630)
T TIGR00643 228 FLASLPFKLTRAQKRVVKEILQDLK---SDVP---MNRLLQGDVGSGKTLVAALAMLA---------------------- 279 (630)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhc---cCCC---ccEEEECCCCCcHHHHHHHHHHH----------------------
Confidence 3446777666666666655521100 0011 12366777777777665544422
Q ss_pred HHHHHHHhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC------CCCCCCEEEEcccccc---C
Q psy12699 839 YHALERFLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG------EEKPANHVACTVEMTS---V 905 (1269)
Q Consensus 839 l~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~~---~ 905 (1269)
.+.++.+++|++||++||.|++++++++ |.++.+++|+....+.. ....++|+|+|+..+. .
T Consensus 280 -----~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~ 354 (630)
T TIGR00643 280 -----AIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE 354 (630)
T ss_pred -----HHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc
Confidence 2245789999999999999999988753 57888999986543211 2336799999998654 3
Q ss_pred CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEecccCCcccccccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSL 985 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~~~l 985 (1269)
+.+++++||||+|+++..+|...+..... . .....++.++++.+....+.. .+ +..+...... |.
T Consensus 355 ~~~l~lvVIDEaH~fg~~qr~~l~~~~~~-~-~~~~~l~~SATp~prtl~l~~-~~-~l~~~~i~~~-p~---------- 419 (630)
T TIGR00643 355 FKRLALVIIDEQHRFGVEQRKKLREKGQG-G-FTPHVLVMSATPIPRTLALTV-YG-DLDTSIIDEL-PP---------- 419 (630)
T ss_pred ccccceEEEechhhccHHHHHHHHHhccc-C-CCCCEEEEeCCCCcHHHHHHh-cC-CcceeeeccC-CC----------
Confidence 78999999999999876444333222110 0 122334455555442222211 11 1111000000 00
Q ss_pred CCcCCCCEEEEecHHhHHHHHHHHH---hcCCceEEEeCCCChhhHH--HHhcccCCCCCCccchhhhhhhccCcccccc
Q psy12699 986 DNIQPGDCIVCFSKNDVYTVSRGIE---SRGTEVAVIYGSLPPTTKL--AQASKFNDPDNPCKVMVATDAIGMGLNFRGI 1060 (1269)
Q Consensus 986 ~~~~~g~~iv~~s~~~~~~l~~~L~---~~~~~~~~i~g~l~~~~r~--~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l 1060 (1269)
-.............-..+.+.+. ..+.++.+++......+.. ..+ ..+. ..+...
T Consensus 420 --~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a----------~~~~--------~~L~~~ 479 (630)
T TIGR00643 420 --GRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAA----------EALY--------ERLKKA 479 (630)
T ss_pred --CCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHH----------HHHH--------HHHHhh
Confidence 00000001111111122222222 2345555555333211110 000 0000 000111
Q ss_pred ccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1061 ~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
. .++++..+||+|++++|++++++|+ +|+.+|||||+++++|||+ +++.||+++.++ .+.++|
T Consensus 480 ~-~~~~v~~lHG~m~~~eR~~i~~~F~--~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r-------------~gls~l 543 (630)
T TIGR00643 480 F-PKYNVGLLHGRMKSDEKEAVMEEFR--EGEVDILVATTVIEVGVDVPNATVMVIEDAER-------------FGLSQL 543 (630)
T ss_pred C-CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEECceeecCcccCCCcEEEEeCCCc-------------CCHHHH
Confidence 1 3567999999999999999999999 9999999999999999999 999999999833 347899
Q ss_pred HHHhcccCCCCCccccccCC
Q psy12699 1140 LQIAGRAGRFNTHFEKLAGS 1159 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~~~~~ 1159 (1269)
+||+||+||.|++|+|+...
T Consensus 544 hQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 544 HQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHhhhcccCCCCcEEEEEE
Confidence 99999999999999996665
No 61
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=2.8e-27 Score=302.14 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=188.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHh-c
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSN-D 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~-~ 870 (1269)
.+++++++|+||||||+| +|+++.+. |.|+ .+.+++..|+|..|.++++++. +
T Consensus 88 ~~~VviI~GeTGSGKTTq-lPq~lle~---------------g~g~----------~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQ-LPKICLEL---------------GRGV----------KGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred hCCeEEEECCCCCCHHHH-HHHHHHHc---------------CCCC----------CCceeeCCCcHHHHHHHHHHHHHH
Confidence 567899999999999998 99986652 1111 1345667797766666666663 3
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccc-cccCCchhHH-HHHHhccCcceE
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQM-MRDITRGWAW-TRALLGLMAKEI 941 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~-~~d~~rg~~~-~~~ll~l~~~~~ 941 (1269)
++..++..+|+..+++.....+++|+++|++++. .+++++++||||||+ +.+.++-... ...+...+..++
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 4444555567665555544557999999977332 489999999999996 5665543322 222222122234
Q ss_pred EEEeecCChHHHHHHHHHcCCc--eEEEecccCCccccccc--------------ccc---ccCCcCCCCEEEEe-cHHh
Q psy12699 942 HVCGEAGAVDLVKAIMMTTNED--VEVYKYKRLTELQIEDS--------------AVG---SLDNIQPGDCIVCF-SKND 1001 (1269)
Q Consensus 942 ~l~~s~~~~~~~~~l~~~~~~~--~~v~~~~r~~~l~~~~~--------------~~~---~l~~~~~g~~iv~~-s~~~ 1001 (1269)
.+++++.+.. .+....+.. +.+.....++...|... ... .+..-.+|+++||+ ++++
T Consensus 222 ILmSATid~e---~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 222 IITSATIDPE---RFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGERE 298 (1294)
T ss_pred EEeeCCCCHH---HHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Confidence 4444333332 333332221 22221111111111110 000 01122457888888 9999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHH
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLA 1081 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~ 1081 (1269)
++.+++.|++.+.. ...+.++||+|++++|++
T Consensus 299 Ie~lae~L~~~~~~------------------------------------------------~~~VlpLhg~Ls~~eQ~~ 330 (1294)
T PRK11131 299 IRDTADALNKLNLR------------------------------------------------HTEILPLYARLSNSEQNR 330 (1294)
T ss_pred HHHHHHHHHhcCCC------------------------------------------------cceEeecccCCCHHHHHH
Confidence 99999998765432 112778999999999996
Q ss_pred HhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCccccc
Q psy12699 1082 QASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTHFEKL 1156 (1269)
Q Consensus 1082 v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~g~~~ 1156 (1269)
+++. .|.++||||||++|+|||| +|++|||+|..|.. ||+ .|... ..|+|.++|.||+|||||. ++|.|+
T Consensus 331 Vf~~----~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~ 405 (1294)
T PRK11131 331 VFQS----HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICI 405 (1294)
T ss_pred Hhcc----cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEE
Confidence 6553 5789999999999999999 99999999998876 776 44332 6689999999999999999 688886
Q ss_pred cCCCC
Q psy12699 1157 AGSHP 1161 (1269)
Q Consensus 1157 ~~~~p 1161 (1269)
....+
T Consensus 406 rLyte 410 (1294)
T PRK11131 406 RLYSE 410 (1294)
T ss_pred EeCCH
Confidence 55544
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=1.1e-27 Score=311.36 Aligned_cols=266 Identities=19% Similarity=0.198 Sum_probs=168.6
Q ss_pred CCcEEEEcchHHHHHHHHHHHhc----------------cCCCceeeecceeeeccC--CCCCCCEEEEcccccc-----
Q psy12699 848 AESGVYCGPLKMLATEVFKKSND----------------RGTPCDLITGEEKKFIQG--EEKPANHVACTVEMTS----- 904 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~----------------~g~~v~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~~----- 904 (1269)
+.++||++|+|+|++|++++++. .+++++..+|+....++. ....++|+|+|||.+.
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts 116 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS 116 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh
Confidence 46899999999999999988752 245778899987654432 1236899999999442
Q ss_pred ----CCCCeeEEEEecccccccCCchhHHHHHHhcc----CcceEEEEeecCChHHHHHHHHHcC--CceEEEe--cccC
Q psy12699 905 ----VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL----MAKEIHVCGEAGAVDLVKAIMMTTN--EDVEVYK--YKRL 972 (1269)
Q Consensus 905 ----~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l----~~~~~~l~~s~~~~~~~~~l~~~~~--~~~~v~~--~~r~ 972 (1269)
.++++++|||||+|.+.+..||..+...+..+ ..+.+.+..+++..+ .+++....+ +++.+.. ..+.
T Consensus 117 k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r~ 195 (1490)
T PRK09751 117 RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMRH 195 (1490)
T ss_pred hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCcc
Confidence 37889999999999999888998765544222 223333443333332 344444432 2333321 1111
Q ss_pred Ccccccccc---------------------c---------cccCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEe
Q psy12699 973 TELQIEDSA---------------------V---------GSLDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIY 1020 (1269)
Q Consensus 973 ~~l~~~~~~---------------------~---------~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~ 1020 (1269)
.++.+.... . ..+..+ ..+++|||+ +++.++.++..|++...+.. .
T Consensus 196 ~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~--~ 273 (1490)
T PRK09751 196 PQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARL--Q 273 (1490)
T ss_pred cceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhc--c
Confidence 111110000 0 001111 235677777 99999999999976432100 0
Q ss_pred CCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccC-CceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEc
Q psy12699 1021 GSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESR-GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT 1099 (1269)
Q Consensus 1021 g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~-gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaT 1099 (1269)
+..+........ .+. .+.....+... ...+..|||+|++++|..+++.|+ +|++++||||
T Consensus 274 ~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK--~G~LrvLVAT 334 (1490)
T PRK09751 274 RSPSIAVDAAHF---EST--------------SGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALK--SGELRCVVAT 334 (1490)
T ss_pred ccccccchhhhh---hhc--------------cccchhccccccceeeeeccccCCHHHHHHHHHHHH--hCCceEEEeC
Confidence 000000000000 000 00000000000 123678999999999999999999 9999999999
Q ss_pred Ccccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCC
Q psy12699 1100 DAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRF 1149 (1269)
Q Consensus 1100 dv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~ 1149 (1269)
+.+++|||| ++++||+++. |.+.++|+||+|||||.
T Consensus 335 ssLELGIDIg~VDlVIq~gs--------------P~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 335 SSLELGIDMGAVDLVIQVAT--------------PLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred cHHHccCCcccCCEEEEeCC--------------CCCHHHHHHHhCCCCCC
Confidence 999999999 8999999998 89999999999999995
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=5.4e-28 Score=272.68 Aligned_cols=282 Identities=23% Similarity=0.263 Sum_probs=211.6
Q ss_pred HhhhcccccCCceEEeccCCCCchHHH----HHHHhc-CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeee
Q psy12699 815 LSAESGVYCGPLKIHAGPTNSGKTYHA----LERFLS-AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKF 885 (1269)
Q Consensus 815 l~~~~~l~~g~~vlv~apTGsGKTl~~----l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~ 885 (1269)
|....|+++|+|++|+++|+||||+++ +..++. +++-+|++|.-+||+|.|+.+++ +|.++.+-.|..+..
T Consensus 223 laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk 302 (830)
T COG1202 223 LAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIK 302 (830)
T ss_pred hhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhc
Confidence 444578999999999999999999998 445555 89999999999999999988854 677788878865554
Q ss_pred ccC------CCCCCCEEEEcccccc-------CCCCeeEEEEecccccccCCchhHHHHHHhc---cCc-ceEE-EEeec
Q psy12699 886 IQG------EEKPANHVACTVEMTS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLG---LMA-KEIH-VCGEA 947 (1269)
Q Consensus 886 ~~~------~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~---l~~-~~~~-l~~s~ 947 (1269)
... ...++||+|+|+|-.+ .+.+++.+||||+|.+.|.+||..+.-.+-. +.+ .++. +.++-
T Consensus 303 ~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV 382 (830)
T COG1202 303 TREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV 382 (830)
T ss_pred ccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec
Confidence 432 2337899999998333 3889999999999999999999987544432 222 3333 33333
Q ss_pred CChHHHHHHHHHcCCceEEEecccCCcccccccc-------ccc------------cCCcCCCCEEEEe-cHHhHHHHHH
Q psy12699 948 GAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSA-------VGS------------LDNIQPGDCIVCF-SKNDVYTVSR 1007 (1269)
Q Consensus 948 ~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~-------~~~------------l~~~~~g~~iv~~-s~~~~~~l~~ 1007 (1269)
. +-++++...+-.. +...+||+|+...-.. ... -..--+||+|||. |++.|..+++
T Consensus 383 g---Np~elA~~l~a~l-V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~ 458 (830)
T COG1202 383 G---NPEELAKKLGAKL-VLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELAD 458 (830)
T ss_pred C---ChHHHHHHhCCee-EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHH
Confidence 2 3455665554322 4455778877542110 000 0112357899888 9999999999
Q ss_pred HHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhcc
Q psy12699 1008 GIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1087 (1269)
Q Consensus 1008 ~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~ 1087 (1269)
.|...|.+ +.+||+|||..+|+.++..|.
T Consensus 459 ~L~~kG~~---------------------------------------------------a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 459 ALTGKGLK---------------------------------------------------AAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HhhcCCcc---------------------------------------------------cccccCCCcHHHHHHHHHHHh
Confidence 88765544 778999999999999999999
Q ss_pred CCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc--cccccCCCCc
Q psy12699 1088 DPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH--FEKLAGSHPA 1162 (1269)
Q Consensus 1088 ~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~--g~~~~~~~p~ 1162 (1269)
++.+.++|+|.+++.|+|+++..||+-.+.. | ..|+|+.+|.|+.|||||-+-+ |.+.+...|+
T Consensus 488 --~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM------G---~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 488 --AQELAAVVTTAALAAGVDFPASQVIFESLAM------G---IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred --cCCcceEeehhhhhcCCCCchHHHHHHHHHc------c---cccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999999999999999999877622 4 3599999999999999997754 6665555554
No 64
>KOG1443|consensus
Probab=99.95 E-value=8e-27 Score=246.90 Aligned_cols=290 Identities=17% Similarity=0.211 Sum_probs=248.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhccccc----CCCCh-hhhHhhhhh
Q psy12699 60 TTIAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQF----PNYHR-NIFFELMPL 134 (1269)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~----~~~~~-~~~~~~~~~ 134 (1269)
++...+..+++|+++++++++++|+.-.+ |++|.+++.+|.++-+++....++...... ...+| ..++++.|.
T Consensus 13 ~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPt 90 (349)
T KOG1443|consen 13 NRVLTLALVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPT 90 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhh
Confidence 44666677799999999999999998766 556677999999988888766654432221 23444 456688899
Q ss_pred HHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHH
Q psy12699 135 PFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVL 214 (1269)
Q Consensus 135 ~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l 214 (1269)
|++.++++.++|+|+.|+++++|+|.|+.+++|+++++.+|.-|+++|.....++++.+|++++++.+.+|+..|+++.+
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~ 170 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL 170 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CCCChHHHHHHHHHHHHHHHHHHHHHhhhhHH-----HHhhcccc-hHHHHHHHHHHH
Q psy12699 215 LNNFLTAVNGVYTKKKLDPK--KDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAK-----VLEYEYLW-DMWFQIQFILSC 286 (1269)
Q Consensus 215 ~s~~~~a~~~v~~k~~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~ll~~~ 286 (1269)
+|+++.|++|.+.+.++++. .+.+|...+++.++.+.+.++|..+.+|+... .+...... -......+.+.|
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g 250 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG 250 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence 99999999999999988543 24689999999999999999999888876532 23322222 233455677889
Q ss_pred HHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 287 CMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
..++++.++.|..+.+++.+|.++++.+|.+++.++|..+.++.. +..+|+|.++.+.|+..|..
T Consensus 251 ~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~l-s~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 251 LLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQL-SLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999954 99999999999999999943
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=2.4e-27 Score=279.15 Aligned_cols=344 Identities=19% Similarity=0.226 Sum_probs=239.0
Q ss_pred HHHHHhhCCCCCcccccccccCC-CCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 756 LRHAKQMFPHLDCMDDLKKISDL-RNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 756 l~~~k~~~p~~~~~~~l~~i~~l-~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++...+..|+--|..|.+.+.++ .+....+|+.| ++.|+.|||||..|+-+.+.+
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~R-------LlQGDVGSGKTvVA~laml~a----------------- 307 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNR-------LLQGDVGSGKTVVALLAMLAA----------------- 307 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHH-------HhccCcCCCHHHHHHHHHHHH-----------------
Confidence 34445578988899998888877 45555666666 789999999999877666444
Q ss_pred CCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccC------CCCCCCEEEEcccccc
Q psy12699 835 SGKTYHALERFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQG------EEKPANHVACTVEMTS 904 (1269)
Q Consensus 835 sGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~~ 904 (1269)
+..|.++..++||-.||.|+++.+.+ +|+++++++|..+..... .+...+|+|||+.++.
T Consensus 308 ----------i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 308 ----------IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred ----------HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 36689999999999999999988765 577899999976554332 3447899999988665
Q ss_pred ---CCCCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeecCChHHHHHHHHHcCCceEEEecccCCccccccc
Q psy12699 905 ---VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDS 980 (1269)
Q Consensus 905 ---~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~ 980 (1269)
.+.++.++|+||-||++-.+|. .|..--. ..-.++.++||+|..-.+..... -
T Consensus 378 d~V~F~~LgLVIiDEQHRFGV~QR~-----~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD------------------l 434 (677)
T COG1200 378 DKVEFHNLGLVIIDEQHRFGVHQRL-----ALREKGEQNPHVLVMTATPIPRTLALTAFGD------------------L 434 (677)
T ss_pred cceeecceeEEEEeccccccHHHHH-----HHHHhCCCCCcEEEEeCCCchHHHHHHHhcc------------------c
Confidence 3899999999999999753332 2222222 23345566777764433332111 1
Q ss_pred cccccCCcCCC-CEEE--EecHHhHHHHHHHHH---hcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccC
Q psy12699 981 AVGSLDNIQPG-DCIV--CFSKNDVYTVSRGIE---SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1054 (1269)
Q Consensus 981 ~~~~l~~~~~g-~~iv--~~s~~~~~~l~~~L~---~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~ 1054 (1269)
.+..++.+++| +-|. ....++..++.+.++ ..|.++..+|--....++..-. ....+.
T Consensus 435 dvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~--------~a~~~~-------- 498 (677)
T COG1200 435 DVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQ--------AAEELY-------- 498 (677)
T ss_pred cchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhh--------hHHHHH--------
Confidence 11234445555 1111 112222233333332 2577777777555444322200 000000
Q ss_pred ccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCcccccc
Q psy12699 1055 LNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDL 1133 (1269)
Q Consensus 1055 ~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p 1133 (1269)
..+. -.-.+..++.+||.|+++|+++++++|+ +|+++|||||.++|.|||+ |+...|+.+..+| |
T Consensus 499 ~~L~-~~~~~~~vgL~HGrm~~~eKd~vM~~Fk--~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERF-----G------ 564 (677)
T COG1200 499 EELK-SFLPELKVGLVHGRMKPAEKDAVMEAFK--EGEIDILVATTVIEVGVDVPNATVMVIENAERF-----G------ 564 (677)
T ss_pred HHHH-HHcccceeEEEecCCChHHHHHHHHHHH--cCCCcEEEEeeEEEecccCCCCeEEEEechhhh-----h------
Confidence 0001 0112345999999999999999999999 9999999999999999999 9999999999666 4
Q ss_pred CCHhHHHHHhcccCCCCCccccccCCCCcccccccchhhhh-hhhhHHHhhccCCC
Q psy12699 1134 ISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLI-SVSAALQIAGRAGR 1188 (1269)
Q Consensus 1134 ~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~-~~~~~~qia~~~g~ 1188 (1269)
.++.+|..||+||.+.+++|++...|...+.++.+++.+ +-.+++.||..+-+
T Consensus 565 --LaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLk 618 (677)
T COG1200 565 --LAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLK 618 (677)
T ss_pred --HHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHh
Confidence 899999999999999999999888888877777877777 67888888876543
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1.2e-26 Score=297.62 Aligned_cols=288 Identities=19% Similarity=0.193 Sum_probs=197.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH-hc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS-ND 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l-~~ 870 (1269)
.+++++++|+||||||+| +|+++.+. |-| ..++++++.|+|..|..+++++ ++
T Consensus 81 ~~~vvii~g~TGSGKTTq-lPq~lle~---------------~~~----------~~~~I~~tQPRRlAA~svA~RvA~e 134 (1283)
T TIGR01967 81 ENQVVIIAGETGSGKTTQ-LPKICLEL---------------GRG----------SHGLIGHTQPRRLAARTVAQRIAEE 134 (1283)
T ss_pred hCceEEEeCCCCCCcHHH-HHHHHHHc---------------CCC----------CCceEecCCccHHHHHHHHHHHHHH
Confidence 467899999999999998 88886652 111 1235677889999999999998 45
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccc-cccCCchhHH-HHHHhccCcceE
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQM-MRDITRGWAW-TRALLGLMAKEI 941 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~-~~d~~rg~~~-~~~ll~l~~~~~ 941 (1269)
+|.+++..+|+..+.+......++|.++|++++- .+.+++++||||+|+ ..+.++...+ .+++...+.-++
T Consensus 135 lg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKl 214 (1283)
T TIGR01967 135 LGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKI 214 (1283)
T ss_pred hCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeE
Confidence 8888999999877777666668899999977432 488999999999996 5665544433 333222222344
Q ss_pred EEEeecCChHHHHHHHHHcCCceEEEeccc--CCccccccc--------------cccccC---CcCCCCEEEEe-cHHh
Q psy12699 942 HVCGEAGAVDLVKAIMMTTNEDVEVYKYKR--LTELQIEDS--------------AVGSLD---NIQPGDCIVCF-SKND 1001 (1269)
Q Consensus 942 ~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r--~~~l~~~~~--------------~~~~l~---~~~~g~~iv~~-s~~~ 1001 (1269)
.+++++.+...+..++ +....+....+ ++...|... ....+. .-.+|+++||+ ++++
T Consensus 215 IlmSATld~~~fa~~F---~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 215 IITSATIDPERFSRHF---NNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred EEEeCCcCHHHHHHHh---cCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 4454444433333332 22111211122 111111100 000011 11457899888 8999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHH
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLA 1081 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~ 1081 (1269)
++.+++.|++.+.. ++.+.++||+|++++|++
T Consensus 292 I~~l~~~L~~~~~~------------------------------------------------~~~VlpLhg~Ls~~eQ~~ 323 (1283)
T TIGR01967 292 IRDAAEILRKRNLR------------------------------------------------HTEILPLYARLSNKEQQR 323 (1283)
T ss_pred HHHHHHHHHhcCCC------------------------------------------------CcEEEeccCCCCHHHHHH
Confidence 99999988764321 123788999999999996
Q ss_pred HhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCccccc
Q psy12699 1082 QASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTHFEKL 1156 (1269)
Q Consensus 1082 v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~g~~~ 1156 (1269)
+ |++ .+..+||||||++|+|||| +|++|||+|+.|.. |++ .|... ..|+|.++|.||+|||||.| .|.|+
T Consensus 324 v---f~~-~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cy 398 (1283)
T TIGR01967 324 V---FQP-HSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICI 398 (1283)
T ss_pred H---hCC-CCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEE
Confidence 6 552 2347999999999999999 99999999998866 776 45443 67899999999999999998 88885
Q ss_pred cCCCC
Q psy12699 1157 AGSHP 1161 (1269)
Q Consensus 1157 ~~~~p 1161 (1269)
.....
T Consensus 399 RLyte 403 (1283)
T TIGR01967 399 RLYSE 403 (1283)
T ss_pred EecCH
Confidence 54433
No 67
>KOG4284|consensus
Probab=99.95 E-value=1.2e-27 Score=272.42 Aligned_cols=294 Identities=17% Similarity=0.142 Sum_probs=202.6
Q ss_pred ccCCceEEeccCCCCchHHH----HHHHh---cCCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA----LERFL---SAESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~----l~~l~---~~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~~ 889 (1269)
+.+-|+||+|..|+|||++| +..+- ...+.+|++||||+|.|+.+.+.+. |.+|.+..|+.....+..
T Consensus 60 ~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~ 139 (980)
T KOG4284|consen 60 FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLI 139 (980)
T ss_pred hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhh
Confidence 67889999999999999987 22222 2678999999999999999888764 458999999876543332
Q ss_pred -CCCCCEEEEcccccc--------CCCCeeEEEEeccccccc-CCchhHHHHHHhccCcceEEEEeecCChHHHHHHH-H
Q psy12699 890 -EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM-M 958 (1269)
Q Consensus 890 -~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~-~ 958 (1269)
-.+++|+|+||+.+. ...+++++|+||||.+.| ..+......++..+|+.++.+..+++...++.... .
T Consensus 140 rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk 219 (980)
T KOG4284|consen 140 RLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSK 219 (980)
T ss_pred hhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHH
Confidence 237899999988432 267999999999999987 55777888889999987776666666655554443 3
Q ss_pred HcCCceEEEecccCCccccccccccccCCcCCCCEEEEe-cH-HhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccC
Q psy12699 959 TTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SK-NDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1036 (1269)
Q Consensus 959 ~~~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~-~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~ 1036 (1269)
...++..++...+.+.+. .-.++++.. +. ...+.....++..+. +-...+..+++-|.
T Consensus 220 ~mrdp~lVr~n~~d~~L~------------GikQyv~~~~s~nnsveemrlklq~L~~--------vf~~ipy~QAlVF~ 279 (980)
T KOG4284|consen 220 FMRDPALVRFNADDVQLF------------GIKQYVVAKCSPNNSVEEMRLKLQKLTH--------VFKSIPYVQALVFC 279 (980)
T ss_pred HhcccceeecccCCceee------------chhheeeeccCCcchHHHHHHHHHHHHH--------HHhhCchHHHHhhh
Confidence 344444444333322211 112233222 21 222222222322211 11111222333333
Q ss_pred CCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEE
Q psy12699 1037 DPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIF 1115 (1269)
Q Consensus 1037 ~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~ 1115 (1269)
+....++.+. ..|-..|+++.++.|.|++.+|..+++.+| +-.++|||+||..+||||- +|+.|||
T Consensus 280 ~~~sra~~~a-----------~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rILVsTDLtaRGIDa~~vNLVVN 346 (980)
T KOG4284|consen 280 DQISRAEPIA-----------THLKSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRILVSTDLTARGIDADNVNLVVN 346 (980)
T ss_pred hhhhhhhHHH-----------HHhhccCCCeEEeccccchhHHHHHHHHhh--hceEEEEEecchhhccCCccccceEEe
Confidence 3222222221 123356777888888888888888888888 7789999999999999999 9999999
Q ss_pred cCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1116 YSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1116 ~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
.|. |.+-+.|.||+|||||+|.+|.++++...+
T Consensus 347 iD~--------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 347 IDA--------------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred cCC--------------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 998 899999999999999999999998776655
No 68
>KOG0924|consensus
Probab=99.94 E-value=7.6e-27 Score=266.99 Aligned_cols=305 Identities=23% Similarity=0.257 Sum_probs=214.9
Q ss_pred HHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCC
Q psy12699 756 LRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNS 835 (1269)
Q Consensus 756 l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGs 835 (1269)
.+|-+|-.|.+.++++|-++.. .+++++++|+||||||+| ++|+|++. |-
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir--------------~n~vvvivgETGSGKTTQ-l~QyL~ed---------------GY 397 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIR--------------ENQVVVIVGETGSGKTTQ-LAQYLYED---------------GY 397 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHh--------------hCcEEEEEecCCCCchhh-hHHHHHhc---------------cc
Confidence 4577778888888887766543 467899999999999999 88987763 11
Q ss_pred CchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH-hccCCCceeeecceeeeccCCCCCCCEEEEccccc-------cCCC
Q psy12699 836 GKTYHALERFLSAESGVYCGPLKMLATEVFKKS-NDRGTPCDLITGEEKKFIQGEEKPANHVACTVEMT-------SVNI 907 (1269)
Q Consensus 836 GKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l-~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~-------~~l~ 907 (1269)
| ..+-+-+.+|+|..|..+++++ .++|...+.-+|+..++++.....+.|-++|-..+ ..+.
T Consensus 398 ~----------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~ 467 (1042)
T KOG0924|consen 398 A----------DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLD 467 (1042)
T ss_pred c----------cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhh
Confidence 1 1344556779999999999999 56888888899999999887777889999995533 2489
Q ss_pred CeeEEEEecccccccCCchhHHHHHHhccCc------ceE-EEEeecCChHHHHHHHHHcCCc--eEEEecccCCccccc
Q psy12699 908 PYEVAVIDEIQMMRDITRGWAWTRALLGLMA------KEI-HVCGEAGAVDLVKAIMMTTNED--VEVYKYKRLTELQIE 978 (1269)
Q Consensus 908 ~~~~lViDEah~~~d~~rg~~~~~~ll~l~~------~~~-~l~~s~~~~~~~~~l~~~~~~~--~~v~~~~r~~~l~~~ 978 (1269)
+|+++|+||||++. ..++++.|+.+ ..+ +++.+++.. .+++....|.. +.+.....++.+.|.
T Consensus 468 kYSviImDEAHERs------lNtDilfGllk~~larRrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTyPV~~~~~ 539 (1042)
T KOG0924|consen 468 KYSVIIMDEAHERS------LNTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTYPVEIMYT 539 (1042)
T ss_pred heeEEEechhhhcc------cchHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHHhCCCceeeecCCccceEEEec
Confidence 99999999999994 44555544432 122 333333332 33444333321 222222222222222
Q ss_pred c--------cccc----ccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccch
Q psy12699 979 D--------SAVG----SLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1045 (1269)
Q Consensus 979 ~--------~~~~----~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l 1045 (1269)
. ..+. ....-.+|+++||. ++++++-.+..+.+. ..++..
T Consensus 540 k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~----------------l~ql~~----------- 592 (1042)
T KOG0924|consen 540 KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEK----------------LEQLDS----------- 592 (1042)
T ss_pred cCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHH----------------HHhhhc-----------
Confidence 1 1111 11223668999998 777777777666442 111100
Q ss_pred hhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-c
Q psy12699 1046 VATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-L 1123 (1269)
Q Consensus 1046 ~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~ 1123 (1269)
-...++.|.++++.||.+.+.++.+. .+.|.++++||||++|++++| +|.+||++|..|.+ |
T Consensus 593 --------------~~~~~L~vlpiYSQLp~dlQ~kiFq~--a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 593 --------------APTTDLAVLPIYSQLPADLQAKIFQK--AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred --------------CCCCceEEEeehhhCchhhhhhhccc--CCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 00134559999999999999955554 448999999999999999999 99999999999988 8
Q ss_pred cc-CCcc--ccccCCHhHHHHHhcccCCCCC
Q psy12699 1124 NE-KGER--EIDLISVSAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1124 ~~-~G~~--~~~p~s~~~y~QR~GRaGR~G~ 1151 (1269)
|+ .|.+ ++.|+|.++..||.|||||.|.
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p 687 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTGP 687 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCCC
Confidence 88 6765 3889999999999999999764
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=284.69 Aligned_cols=263 Identities=21% Similarity=0.312 Sum_probs=189.1
Q ss_pred cccCCceEEeccCCCCchHHHH----HHHhc--------CCcEEEEcchHHHHHHHHHHHh----ccCCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL----ERFLS--------AESGVYCGPLKMLATEVFKKSN----DRGTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l----~~l~~--------~~~~lil~Ptr~La~Qi~~~l~----~~g~~v~~~~G~~~~ 884 (1269)
+.+|+|++++||||||||++|+ ..+.+ +-.++|+.|.|+|.+.+.+++. .+|.++.+.+|+...
T Consensus 34 i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~ 113 (814)
T COG1201 34 IHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQ 113 (814)
T ss_pred HhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCCh
Confidence 4788899999999999998883 22222 2468999999999999999986 478899999999766
Q ss_pred eccC--CCCCCCEEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhcc---Cc--ceEEEEeec
Q psy12699 885 FIQG--EEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL---MA--KEIHVCGEA 947 (1269)
Q Consensus 885 ~~~~--~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l---~~--~~~~l~~s~ 947 (1269)
.+.. ....+||+++|||.+. .+.+++++||||+|.+.+..||..+...+..+ .. .++-+.++-
T Consensus 114 ~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV 193 (814)
T COG1201 114 SEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV 193 (814)
T ss_pred HHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc
Confidence 5443 2338999999999554 28899999999999999999999886555333 22 233444555
Q ss_pred CChHHHHHHHHHcCCceEEEec--ccCCcccccccc-------------ccccCC-c-CCCCEEEEe-cHHhHHHHHHHH
Q psy12699 948 GAVDLVKAIMMTTNEDVEVYKY--KRLTELQIEDSA-------------VGSLDN-I-QPGDCIVCF-SKNDVYTVSRGI 1009 (1269)
Q Consensus 948 ~~~~~~~~l~~~~~~~~~v~~~--~r~~~l~~~~~~-------------~~~l~~-~-~~g~~iv~~-s~~~~~~l~~~L 1009 (1269)
.+...+..+....++++++... .+...+...... ...+.. + +...++||. +|..++.++..|
T Consensus 194 ~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L 273 (814)
T COG1201 194 GPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRL 273 (814)
T ss_pred CCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHH
Confidence 5555556655444435554332 222111111100 000100 1 112445555 677777777666
Q ss_pred HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCC
Q psy12699 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDP 1089 (1269)
Q Consensus 1010 ~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~ 1089 (1269)
.+.+. ..+..|||+++.++|..++++|+
T Consensus 274 ~~~~~--------------------------------------------------~~i~~HHgSlSre~R~~vE~~lk-- 301 (814)
T COG1201 274 KKLGP--------------------------------------------------DIIEVHHGSLSRELRLEVEERLK-- 301 (814)
T ss_pred HHhcC--------------------------------------------------CceeeecccccHHHHHHHHHHHh--
Confidence 55432 23889999999999999999999
Q ss_pred CCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCC
Q psy12699 1090 DNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRF 1149 (1269)
Q Consensus 1090 ~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~ 1149 (1269)
+|+.+++|||+.++-|||+ +|+.||+++. |.+.+..+||+||+|+.
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq~~S--------------P~sV~r~lQRiGRsgHr 348 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQLGS--------------PKSVNRFLQRIGRAGHR 348 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEEeCC--------------cHHHHHHhHhccccccc
Confidence 9999999999999999999 9999999997 88999999999999974
No 70
>KOG1442|consensus
Probab=99.94 E-value=1.4e-27 Score=247.64 Aligned_cols=299 Identities=21% Similarity=0.248 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHhhc-----ccccCC--CChhhhHhhh
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTS--YVFPSFKIVALGQLLTTVVVLYVGKKLR-----FIQFPN--YHRNIFFELM 132 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~--~~f~~~~~l~~~q~~~~~lll~~~~~~~-----~~~~~~--~~~~~~~~~~ 132 (1269)
......+..|..+++++.+.||++++. ...+.|.++++.|++.+..++..+.+.. ..+++. ++.+..++++
T Consensus 27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vl 106 (347)
T KOG1442|consen 27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVL 106 (347)
T ss_pred hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhc
Confidence 345567778999999999999999985 4577889999999999998887665432 223332 5667888999
Q ss_pred hhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC---CccchHH
Q psy12699 133 PLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND---LGYNFQG 209 (1269)
Q Consensus 133 ~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G 209 (1269)
|+++.+.+++.+.|++|+|+++++|++-++++.+|+.+++++++|++-+.....+++++++|..+.+..+ ...++.|
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G 186 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG 186 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998766 5677899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHH
Q psy12699 210 YVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMG 289 (1269)
Q Consensus 210 ~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~ 289 (1269)
.++++.|+++.|+..+++|+.+. .....-|.+++|+++.+.+.++|...+.++....+.+++.++..+|..+.++|+++
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~-~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfg 265 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLP-PVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFG 265 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheecc-cccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999773 34556899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCCcccc
Q psy12699 290 FILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPAPVKK 362 (1269)
Q Consensus 290 ~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~~~~~ 362 (1269)
|.+++...|.||.+||+|+.+.++.|.+..+++++.+++|.. +..-|-|-+++++|..+|++.|..+.++++
T Consensus 266 F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~k-s~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 266 FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETK-SGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHh-hhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999966 888899999999999999999877665443
No 71
>KOG0951|consensus
Probab=99.94 E-value=1e-26 Score=281.22 Aligned_cols=310 Identities=19% Similarity=0.231 Sum_probs=224.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc---------------CCcEEEEcchHHHHHHHHHHH----hccCCCceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS---------------AESGVYCGPLKMLATEVFKKS----NDRGTPCDLITGE 881 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~---------------~~~~lil~Ptr~La~Qi~~~l----~~~g~~v~~~~G~ 881 (1269)
+....|+++|||||+|||.+|+..+++ ..+++|++|+++|++++...+ ..+|++|.-.||+
T Consensus 322 l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD 401 (1674)
T KOG0951|consen 322 LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGD 401 (1674)
T ss_pred hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccc
Confidence 445678999999999999999544433 347899999999999998654 4578899999998
Q ss_pred eeeeccCCCCCCCEEEEccccccC----------CCCeeEEEEecccccccCCchhHHHHHHhccC------cceEEEEe
Q psy12699 882 EKKFIQGEEKPANHVACTVEMTSV----------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLM------AKEIHVCG 945 (1269)
Q Consensus 882 ~~~~~~~~~~~~~Ivv~T~e~~~~----------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~------~~~~~l~~ 945 (1269)
.....+ .-..++|+|||||..+. .+-++++||||+|++.| .||...+.+..+.. .+...+.|
T Consensus 402 ~~l~~~-qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVG 479 (1674)
T KOG0951|consen 402 SQLGKE-QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVG 479 (1674)
T ss_pred ccchhh-hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeee
Confidence 654222 12368999999997753 44689999999999954 79999876654332 13456666
Q ss_pred ecCChHHHHHHHHHcCCce----EEEecccCCcccccccccc------------------ccCCcCCCCEEEEe-cHHhH
Q psy12699 946 EAGAVDLVKAIMMTTNEDV----EVYKYKRLTELQIEDSAVG------------------SLDNIQPGDCIVCF-SKNDV 1002 (1269)
Q Consensus 946 s~~~~~~~~~l~~~~~~~~----~v~~~~r~~~l~~~~~~~~------------------~l~~~~~g~~iv~~-s~~~~ 1002 (1269)
..+..|+..+.....+.+. .+....|++|+......+. .+....+++++||+ +|+++
T Consensus 480 LSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET 559 (1674)
T KOG0951|consen 480 LSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKET 559 (1674)
T ss_pred ecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHH
Confidence 6666666666654333222 2455678888875432111 12334567999999 99999
Q ss_pred HHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHH
Q psy12699 1003 YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQ 1082 (1269)
Q Consensus 1003 ~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v 1082 (1269)
.+.|+.++..... .++ ..... .+.....+.+-.++-.....++++|+..| +++||+||...+|+.+
T Consensus 560 ~ktA~aIRd~~le---------~dt-ls~fm--re~s~s~eilrtea~~~kn~dLkdLLpyg--faIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 560 AKTARAIRDKALE---------EDT-LSRFM--REDSASREILRTEAGQAKNPDLKDLLPYG--FAIHHAGLNRKDRELV 625 (1674)
T ss_pred HHHHHHHHHHHhh---------hhH-HHHHH--hcccchhhhhhhhhhcccChhHHHHhhcc--ceeeccCCCcchHHHH
Confidence 9999999864322 111 00000 11122223333444456678889999999 8999999999999999
Q ss_pred hhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCccc-CCccccccCCHhHHHHHhcccCCCCCc
Q psy12699 1083 ASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNE-KGEREIDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1083 ~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~-~G~~~~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
++.|+ +|.++|+|+|.++++|+|++.+.||.-+.+.|+ + +|+ -.++++.+..||.|||||-+-+
T Consensus 626 EdLf~--~g~iqvlvstatlawgvnlpahtViikgtqvy~--pekg~--w~elsp~dv~qmlgragrp~~D 690 (1674)
T KOG0951|consen 626 EDLFA--DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYD--PEKGR--WTELSPLDVMQMLGRAGRPQYD 690 (1674)
T ss_pred HHHHh--cCceeEEEeehhhhhhcCCCcceEEecCccccC--cccCc--cccCCHHHHHHHHhhcCCCccC
Confidence 99999 999999999999999999999999999986654 4 554 3478999999999999996654
No 72
>KOG0947|consensus
Probab=99.94 E-value=2.7e-26 Score=271.80 Aligned_cols=368 Identities=23% Similarity=0.264 Sum_probs=242.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+..|.+++|.|+|++|||++|..++ ..+.|++|..|-++|.+|.++.+++.--.++++||+... +..+.++
T Consensus 309 lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqi-----nPeAsCL 383 (1248)
T KOG0947|consen 309 LERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQI-----NPEASCL 383 (1248)
T ss_pred HHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceee-----CCCcceE
Confidence 4668999999999999999984433 237899999999999999999998765678899999877 3458899
Q ss_pred EEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcC----Cce
Q psy12699 897 ACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTN----EDV 964 (1269)
Q Consensus 897 v~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~----~~~ 964 (1269)
|+|.|++. ..++++++|+||+|.+.|.+||..|+.+++-+|+....++-+++. |+..+++.+.| +.+
T Consensus 384 IMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV-PN~~EFA~WIGRtK~K~I 462 (1248)
T KOG0947|consen 384 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV-PNTLEFADWIGRTKQKTI 462 (1248)
T ss_pred eehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccC-CChHHHHHHhhhccCceE
Confidence 99988554 378999999999999999999999999999998875544433322 23344444433 333
Q ss_pred EE-EecccCCccccccc----cc------------------cccC-----------------------------Cc----
Q psy12699 965 EV-YKYKRLTELQIEDS----AV------------------GSLD-----------------------------NI---- 988 (1269)
Q Consensus 965 ~v-~~~~r~~~l~~~~~----~~------------------~~l~-----------------------------~~---- 988 (1269)
.| ....|++|+++.-. .. .... +.
T Consensus 463 yViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~ 542 (1248)
T KOG0947|consen 463 YVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRG 542 (1248)
T ss_pred EEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccc
Confidence 33 34577887753100 00 0000 00
Q ss_pred -----CCC------------------CEEEE-ecHHhHHHHHHHHHhcCCceEEEeCCCC-hhhHHH--Hh-cccCCCCC
Q psy12699 989 -----QPG------------------DCIVC-FSKNDVYTVSRGIESRGTEVAVIYGSLP-PTTKLA--QA-SKFNDPDN 1040 (1269)
Q Consensus 989 -----~~g------------------~~iv~-~s~~~~~~l~~~L~~~~~~~~~i~g~l~-~~~r~~--~~-~~f~~~~~ 1040 (1269)
.++ .++|| |+|+.|++.++.|......- +.. .+.+.. +. ......+.
T Consensus 543 ~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~-----~~EKseV~lfl~k~~~rLk~~DR 617 (1248)
T KOG0947|consen 543 SGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD-----SKEKSEVHLFLSKAVARLKGEDR 617 (1248)
T ss_pred ccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc-----chhHHHHHHHHHHHHHhcChhhc
Confidence 000 13444 49999999999988765421 000 011100 00 00111111
Q ss_pred CccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCC
Q psy12699 1041 PCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIK 1120 (1269)
Q Consensus 1041 ~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k 1120 (1269)
..+. -...+.++.+| +++||||+-+--++-++..|. .|-+|||+||.++++|||+++++||+.++.|
T Consensus 618 ~LPQ---------vl~m~~ll~RG--iaVHH~GlLPivKE~VE~LFq--rGlVKVLFATETFAMGVNMPARtvVF~Sl~K 684 (1248)
T KOG0947|consen 618 NLPQ---------VLSMRSLLLRG--IAVHHGGLLPIVKEVVELLFQ--RGLVKVLFATETFAMGVNMPARTVVFSSLRK 684 (1248)
T ss_pred cchH---------HHHHHHHHhhc--chhhcccchHHHHHHHHHHHh--cCceEEEeehhhhhhhcCCCceeEEeeehhh
Confidence 1111 12334566777 899999999999999999999 9999999999999999999999999999988
Q ss_pred CCcccCCccccccCCHhHHHHHhcccCCCCCc--ccccc--CCC-CcccccccchhhhhhhhhHHHhhccCCCCcccccc
Q psy12699 1121 PSLNEKGEREIDLISVSAALQIAGRAGRFNTH--FEKLA--GSH-PALNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1195 (1269)
Q Consensus 1121 ~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~--g~~~~--~~~-p~~~~~~~~~~~~~~~~~~~qia~~~g~~~~~~~~ 1195 (1269)
.| |. +.+-+.+-+|.|++|||||.|-+ |+++. ... |+.... -.-|-|..-+..|.|..
T Consensus 685 hD----G~-efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l------------~~li~G~~~~L~SQFRl 747 (1248)
T KOG0947|consen 685 HD----GN-EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATL------------KRLIMGGPTRLESQFRL 747 (1248)
T ss_pred cc----Cc-ceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHH------------hhHhcCCCchhhhhhhh
Confidence 87 43 24567889999999999999865 66632 222 332211 01144555565665655
Q ss_pred cceEeeCCC--ChHHHHHhhcCCCCcccccccccCc
Q psy12699 1196 GFVTTFKPD--DLPILKNLLAQSPEPITKAGLHPTA 1229 (1269)
Q Consensus 1196 ~~v~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 1229 (1269)
.|---+..- +-.+++.+++....+..+....|..
T Consensus 748 TY~MILnLLRve~lrvEdm~krSf~E~~s~~~~~~~ 783 (1248)
T KOG0947|consen 748 TYGMILNLLRVEALRVEDMMKRSFSEFVSQRLSPEH 783 (1248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCHHH
Confidence 543222211 1133445665555555444444433
No 73
>KOG0327|consensus
Probab=99.94 E-value=1.8e-26 Score=252.49 Aligned_cols=269 Identities=18% Similarity=0.182 Sum_probs=196.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~- 888 (1269)
+..|.|+.+++++|+|||.++....+. ..++++++||||||.|+.++....|. ++..++|+.....+.
T Consensus 60 ~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~ 139 (397)
T KOG0327|consen 60 CIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ 139 (397)
T ss_pred cccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh
Confidence 478999999999999999998333322 56789999999999999988877654 555566665443222
Q ss_pred --CCCCCCEEEEccc----cccC----CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 --EEKPANHVACTVE----MTSV----NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e----~~~~----l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
....++|+++||+ +++. .+.++++|+||+|+|+..++...+..+...++.+.+.++.+++..+.+..+..
T Consensus 140 ~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~ 219 (397)
T KOG0327|consen 140 ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTK 219 (397)
T ss_pred hhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHH
Confidence 2236899999986 3331 55799999999999988888888999999998887777878888777777765
Q ss_pred HcCC-ceEEEecccCCcccc--------ccc-cccc---cCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCC
Q psy12699 959 TTNE-DVEVYKYKRLTELQI--------EDS-AVGS---LDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLP 1024 (1269)
Q Consensus 959 ~~~~-~~~v~~~~r~~~l~~--------~~~-~~~~---l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~ 1024 (1269)
...+ ++.+........+.. .+. .... +.+ ...+.++|+ +++.++.+...|...+..
T Consensus 220 ~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~~--------- 289 (397)
T KOG0327|consen 220 KFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGFT--------- 289 (397)
T ss_pred HhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCce---------
Confidence 5433 222211110000110 000 0000 111 223444444 777788887777655554
Q ss_pred hhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccc
Q psy12699 1025 PTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1104 (1269)
Q Consensus 1025 ~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~ 1104 (1269)
+...||.|.+.+|+.+++.|+ .|..+|||.|+.++|
T Consensus 290 ------------------------------------------~s~~~~d~~q~~R~~~~~ef~--~gssrvlIttdl~ar 325 (397)
T KOG0327|consen 290 ------------------------------------------VSAIHGDMEQNERDTLMREFR--SGSSRVLITTDLLAR 325 (397)
T ss_pred ------------------------------------------EEEeecccchhhhhHHHHHhh--cCCceEEeecccccc
Confidence 556688888888888889999 999999999999999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcccccc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLA 1157 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~ 1157 (1269)
|+|+ ++..||||++ |...++|.||+||+||.|++|.++.
T Consensus 326 gidv~~~slvinydl--------------P~~~~~yihR~gr~gr~grkg~~in 365 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDL--------------PARKENYIHRIGRAGRFGRKGVAIN 365 (397)
T ss_pred ccchhhcceeeeecc--------------ccchhhhhhhcccccccCCCceeee
Confidence 9999 9999999999 8889999999999999888876643
No 74
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-25 Score=277.42 Aligned_cols=282 Identities=22% Similarity=0.243 Sum_probs=201.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH-hc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS-ND 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l-~~ 870 (1269)
++++++++||||||||+| +|++|++. + ...++++.++.|+|..|..+++++ ++
T Consensus 64 ~~~vvii~getGsGKTTq-lP~~lle~-g------------------------~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQ-LPQFLLEE-G------------------------LGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred hCCEEEEeCCCCCChHHH-HHHHHHhh-h------------------------cccCCeEEecCchHHHHHHHHHHHHHH
Confidence 568899999999999999 88887763 0 012457788889999999999999 56
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccc-------ccCCCCeeEEEEecccccc-cCCchhHHHHH-HhccCcc-e
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEM-------TSVNIPYEVAVIDEIQMMR-DITRGWAWTRA-LLGLMAK-E 940 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~-------~~~l~~~~~lViDEah~~~-d~~rg~~~~~~-ll~l~~~-~ 940 (1269)
+|.+++-.+|+..+++......+.|-++|-.+ ...++.|+++|+||+|+++ +.+....+... +...+.+ .
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 88899999999999998877789999999542 2359999999999999994 22222222222 2222212 4
Q ss_pred EEEEeecCChHHHHHHHHHcCCceEEEecccCCccccccc-------------cccccCCcCCCCEEEEe-cHHhHHHHH
Q psy12699 941 IHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDS-------------AVGSLDNIQPGDCIVCF-SKNDVYTVS 1006 (1269)
Q Consensus 941 ~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~-------------~~~~l~~~~~g~~iv~~-s~~~~~~l~ 1006 (1269)
+++|+++...+.+..++... ..+++.....++...|... .+.....-.+|++++|+ ++++++.++
T Consensus 198 iIimSATld~~rfs~~f~~a-pvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNA-PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred EEEEecccCHHHHHHHcCCC-CEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 45566555555555554321 1122222222222222111 11112223578999999 999999999
Q ss_pred HHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhc
Q psy12699 1007 RGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKF 1086 (1269)
Q Consensus 1007 ~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F 1086 (1269)
+.|++.... ..+.|.++||.|+.+++.+ .|
T Consensus 277 ~~L~~~~l~-----------------------------------------------~~~~i~PLy~~L~~~eQ~r---vF 306 (845)
T COG1643 277 EWLEKAELG-----------------------------------------------DDLEILPLYGALSAEEQVR---VF 306 (845)
T ss_pred HHHHhcccc-----------------------------------------------CCcEEeeccccCCHHHHHh---hc
Confidence 999771110 1123889999999999994 56
Q ss_pred c-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCC
Q psy12699 1087 N-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1087 ~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G 1150 (1269)
+ .|.|++||++|||++|++|+| +|++|||.|..|.. ||+ .|..+ ..|+|.+++.||.|||||.+
T Consensus 307 ~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~ 376 (845)
T COG1643 307 EPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG 376 (845)
T ss_pred CCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC
Confidence 6 446778899999999999999 99999999999987 887 56553 88999999999999999954
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.4e-26 Score=285.06 Aligned_cols=320 Identities=22% Similarity=0.254 Sum_probs=225.4
Q ss_pred ccccCCceEEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhc-cCC---CceeeecceeeeccCCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSND-RGT---PCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~-~g~---~v~~~~G~~~~~~~~~~~ 891 (1269)
.+..|++++|+||||||||+++.. ++..+.+++|+.|.++|.+|.++++.+ +|. .+++.||+... +.
T Consensus 130 ~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-----N~ 204 (1041)
T COG4581 130 ILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-----NP 204 (1041)
T ss_pred HHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceee-----CC
Confidence 456799999999999999999843 334488899999999999999999954 553 36999999887 45
Q ss_pred CCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcc-eEEEEeecCC-h-HHHHHHHHHc
Q psy12699 892 PANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAK-EIHVCGEAGA-V-DLVKAIMMTT 960 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~-~~~l~~s~~~-~-~~~~~l~~~~ 960 (1269)
++.++|+|.|.+. .+..+..||+||+|.+.|.+||.+|+..++.++.. ++..++++.+ . .+-.++....
T Consensus 205 ~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 205 DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 6899999988554 37899999999999999999999999999999876 4444433322 2 2233333333
Q ss_pred CCceE-EEecccCCcccccccc-----------c-----------cccC----------C--------------------
Q psy12699 961 NEDVE-VYKYKRLTELQIEDSA-----------V-----------GSLD----------N-------------------- 987 (1269)
Q Consensus 961 ~~~~~-v~~~~r~~~l~~~~~~-----------~-----------~~l~----------~-------------------- 987 (1269)
..++. +....|++|+.+.... . ..+. +
T Consensus 285 ~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (1041)
T COG4581 285 SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGP 364 (1041)
T ss_pred CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCccccc
Confidence 44444 6677888887542100 0 0000 0
Q ss_pred ---------cC-CC--CEEE-EecHHhHHHHHHHHHhcCCceEEEeCCCChhhH-HHHhcccCCCCCCccchhhhhhhc-
Q psy12699 988 ---------IQ-PG--DCIV-CFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTK-LAQASKFNDPDNPCKVMVATDAIG- 1052 (1269)
Q Consensus 988 ---------~~-~g--~~iv-~~s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r-~~~~~~f~~~~~~~~~l~~t~~~~- 1052 (1269)
+. .+ ..|+ +|++++|+..+..+...... .-.+.++ .+.+.. +.+..+..++..-
T Consensus 365 ~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~------~~~~~e~~i~~ii~-----~~i~~L~~ed~~lp 433 (1041)
T COG4581 365 AGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLV------LTEEKERAIREIID-----HAIGDLAEEDRELP 433 (1041)
T ss_pred ccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccc------cCCcHHHHHHHHHH-----HHHhhcChhhhcCc
Confidence 00 00 2344 44999999999888654322 1122223 222211 0000011011100
Q ss_pred -cCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCcccc
Q psy12699 1053 -MGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREI 1131 (1269)
Q Consensus 1053 -~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~ 1131 (1269)
.-.....++.+| +++||+||-+..|..+++.|. .|-++|++||.+++.|+|+++++|+++.+.|++ |+ ..
T Consensus 434 ~~~~~~~~~L~RG--iavHH~GlLP~~K~~vE~Lfq--~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~d----G~-~~ 504 (1041)
T COG4581 434 LQILEISALLLRG--IAVHHAGLLPAIKELVEELFQ--EGLVKVVFATETFAIGINMPARTVVFTSLSKFD----GN-GH 504 (1041)
T ss_pred ccHHHHHHHHhhh--hhhhccccchHHHHHHHHHHh--ccceeEEeehhhhhhhcCCcccceeeeeeEEec----CC-ce
Confidence 012234566777 569999999999999999999 999999999999999999999999999999997 53 35
Q ss_pred ccCCHhHHHHHhcccCCCCCc--cccccCCCCccc
Q psy12699 1132 DLISVSAALQIAGRAGRFNTH--FEKLAGSHPALN 1164 (1269)
Q Consensus 1132 ~p~s~~~y~QR~GRaGR~G~~--g~~~~~~~p~~~ 1164 (1269)
++++..+|.|+.|||||.|.+ |.++...+|...
T Consensus 505 r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 505 RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred eecChhHHHHhhhhhccccccccceEEEecCCCCC
Confidence 799999999999999999976 677777666654
No 76
>KOG0948|consensus
Probab=99.94 E-value=1.7e-26 Score=267.04 Aligned_cols=312 Identities=23% Similarity=0.260 Sum_probs=224.7
Q ss_pred cccccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCC
Q psy12699 819 SGVYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 819 ~~l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
+.+-.+++++|+|-|++|||.+|..+ +....|++|..|-++|.+|.|+++.+....|++.||+... +..+.
T Consensus 139 ~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI-----nP~AS 213 (1041)
T KOG0948|consen 139 KCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI-----NPDAS 213 (1041)
T ss_pred hhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee-----CCCCc
Confidence 45677899999999999999998333 3347899999999999999999997766789999999887 34577
Q ss_pred EEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcce-EEEEeecC--ChHHHHHHHHHcCCc
Q psy12699 895 HVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKE-IHVCGEAG--AVDLVKAIMMTTNED 963 (1269)
Q Consensus 895 Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~-~~l~~s~~--~~~~~~~l~~~~~~~ 963 (1269)
.+|+|.|++. .++.+.++|+||+|.|.|.+||..|+.-++-++... ...++++. ...+.++++..-.++
T Consensus 214 CLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQP 293 (1041)
T KOG0948|consen 214 CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQP 293 (1041)
T ss_pred eeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCC
Confidence 8999988664 278999999999999999999999998888776542 22233222 223445555555667
Q ss_pred eE-EEecccCCcccccccc------------------------cccc------C-------Cc-----------------
Q psy12699 964 VE-VYKYKRLTELQIEDSA------------------------VGSL------D-------NI----------------- 988 (1269)
Q Consensus 964 ~~-v~~~~r~~~l~~~~~~------------------------~~~l------~-------~~----------------- 988 (1269)
++ +....|++|+.+.--+ ...+ . ..
T Consensus 294 cHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~k 373 (1041)
T KOG0948|consen 294 CHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYK 373 (1041)
T ss_pred ceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHH
Confidence 77 5677788888542100 0000 0 00
Q ss_pred -------CC-CCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCC-------CCCCccchhhhhhhc
Q psy12699 989 -------QP-GDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFND-------PDNPCKVMVATDAIG 1052 (1269)
Q Consensus 989 -------~~-g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~-------~~~~~~~l~~t~~~~ 1052 (1269)
+. ..+|||. ++++|+..|-++.+.... +++++...-.-|++ .+...+.+
T Consensus 374 iVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN--------~deEk~~V~~iF~nAi~~LseeDr~LPqi------- 438 (1041)
T KOG0948|consen 374 IVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFN--------TDEEKELVETIFNNAIDQLSEEDRELPQI------- 438 (1041)
T ss_pred HHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCC--------ChhHHHHHHHHHHHHHHhcChhhccchHH-------
Confidence 00 1255554 999999999888765443 11221111000110 00000000
Q ss_pred cCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccc
Q psy12699 1053 MGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREID 1132 (1269)
Q Consensus 1053 ~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~ 1132 (1269)
.+..-|+.+| +++|||||-+--++.++-.|. +|-+++|.||.+.++|+|+++++|++....||| |. .++
T Consensus 439 --e~iLPLL~RG--IGIHHsGLLPIlKE~IEILFq--EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfD----G~-~fR 507 (1041)
T KOG0948|consen 439 --ENILPLLRRG--IGIHHSGLLPILKEVIEILFQ--EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFD----GK-KFR 507 (1041)
T ss_pred --HHHHHHHHhc--cccccccchHHHHHHHHHHHh--ccHHHHHHhhhhhhhccCCcceeEEEeeccccC----Cc-cee
Confidence 1222456788 899999999999999999999 999999999999999999999999999999998 53 467
Q ss_pred cCCHhHHHHHhcccCCCCCc--cccccCCCC
Q psy12699 1133 LISVSAALQIAGRAGRFNTH--FEKLAGSHP 1161 (1269)
Q Consensus 1133 p~s~~~y~QR~GRaGR~G~~--g~~~~~~~p 1161 (1269)
++|.-+|+|+.|||||.|.+ |.++.....
T Consensus 508 wissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 508 WISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred eecccceEEecccccccCCCCCceEEEEecC
Confidence 99999999999999999975 666555433
No 77
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=1.3e-25 Score=277.24 Aligned_cols=262 Identities=17% Similarity=0.090 Sum_probs=164.7
Q ss_pred cccCC-ceEEeccCCCCchHHH---HHHHhc---CC-cEEEEcchHHHHHHHHHHHhccC--------------------
Q psy12699 821 VYCGP-LKIHAGPTNSGKTYHA---LERFLS---AE-SGVYCGPLKMLATEVFKKSNDRG-------------------- 872 (1269)
Q Consensus 821 l~~g~-~vlv~apTGsGKTl~~---l~~l~~---~~-~~lil~Ptr~La~Qi~~~l~~~g-------------------- 872 (1269)
+++|+ ++++++|||||||.++ +.++.. .+ +.++++||||||.|+++.+.+++
T Consensus 27 il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~ 106 (844)
T TIGR02621 27 FVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTR 106 (844)
T ss_pred HHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 35676 5777788888888744 222221 23 44557799999999998876543
Q ss_pred -------CCceeeecceeeeccCC--CCCCCEEEEcccccc--------------------CCCCeeEEEEecccccccC
Q psy12699 873 -------TPCDLITGEEKKFIQGE--EKPANHVACTVEMTS--------------------VNIPYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 873 -------~~v~~~~G~~~~~~~~~--~~~~~Ivv~T~e~~~--------------------~l~~~~~lViDEah~~~d~ 923 (1269)
.++..++|+.....+.. ..+++|+|+|++++. .+.+++++|+|||| +++
T Consensus 107 ~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~ 184 (844)
T TIGR02621 107 PEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEP 184 (844)
T ss_pred cccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hcc
Confidence 34566788876554442 237899999976332 14789999999999 577
Q ss_pred CchhHHHHHHhcc--Ccc---eEEEEeecCChHHHHHHHHHc-CCceEEEec-ccCCc---ccccc---c-----ccccc
Q psy12699 924 TRGWAWTRALLGL--MAK---EIHVCGEAGAVDLVKAIMMTT-NEDVEVYKY-KRLTE---LQIED---S-----AVGSL 985 (1269)
Q Consensus 924 ~rg~~~~~~ll~l--~~~---~~~l~~s~~~~~~~~~l~~~~-~~~~~v~~~-~r~~~---l~~~~---~-----~~~~l 985 (1269)
++......++..+ +.. .+.+++++|.......+.... .++..+... .+... ..+.. . ....+
T Consensus 185 gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L 264 (844)
T TIGR02621 185 AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKEL 264 (844)
T ss_pred ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHH
Confidence 8888887777653 322 245556666554343433221 122221111 01000 00000 0 00000
Q ss_pred ---CCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccc
Q psy12699 986 ---DNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIE 1061 (1269)
Q Consensus 986 ---~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~ 1061 (1269)
..-..++++||+ ++++++.+++.|++.+
T Consensus 265 ~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------------------------------------------------ 296 (844)
T TIGR02621 265 NLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK------------------------------------------------ 296 (844)
T ss_pred HHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC------------------------------------------------
Confidence 001223455555 6666666666665432
Q ss_pred cCCceeEEEcCCCCHHhHH-----HHhhhccCCC----CC-------eeEEEEcCccccccccCceEEEEcCCCCCCccc
Q psy12699 1062 SRGTEVAVIYGSLPPTTKL-----AQASKFNDPD----NP-------CKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNE 1125 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~-----~v~~~F~~~~----g~-------~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~ 1125 (1269)
+..+||+|++++|+ ++++.|+ + |+ .+||||||++++||||+.++||++..
T Consensus 297 -----~~lLHG~m~q~dR~~~~~~~il~~Fk--~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a------- 362 (844)
T TIGR02621 297 -----FELLTGTLRGAERDDLVKKEIFNRFL--PQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA------- 362 (844)
T ss_pred -----CeEeeCCCCHHHHhhHHHHHHHHHHh--ccccccccccccccceEEeccchhhhcccCCcceEEECCC-------
Confidence 24578899999888 7788898 4 33 78999999999999997699998554
Q ss_pred CCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1126 KGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1126 ~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
| .++|+||+||+||.|+++.+
T Consensus 363 -------P--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 363 -------P--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred -------C--HHHHHHHhcccCCCCCCCCc
Confidence 4 68999999999999996544
No 78
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=1.4e-25 Score=265.27 Aligned_cols=259 Identities=17% Similarity=0.180 Sum_probs=161.3
Q ss_pred ceEEeccCCCCchHHHHHHHh------cCCcEEEEcchHHHHHHHHHHHhcc-CCCceeeecceeeec-----------c
Q psy12699 826 LKIHAGPTNSGKTYHALERFL------SAESGVYCGPLKMLATEVFKKSNDR-GTPCDLITGEEKKFI-----------Q 887 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~~l~------~~~~~lil~Ptr~La~Qi~~~l~~~-g~~v~~~~G~~~~~~-----------~ 887 (1269)
+++++||||||||.+++..++ .+.+++|++|+|+|+.|+++++++. +.+++..+|...... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 356666666666666633322 2578999999999999999999874 666665555322100 0
Q ss_pred ------C---CCCCCCEEEEcccccc--CCC------------CeeEEEEecccccccCCchhHHHHHHhccC-cceEEE
Q psy12699 888 ------G---EEKPANHVACTVEMTS--VNI------------PYEVAVIDEIQMMRDITRGWAWTRALLGLM-AKEIHV 943 (1269)
Q Consensus 888 ------~---~~~~~~Ivv~T~e~~~--~l~------------~~~~lViDEah~~~d~~rg~~~~~~ll~l~-~~~~~l 943 (1269)
. .....+|+++|++.+. ... ..+++|+||+|++.+..++. +...+..+. .....+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 0125689999988432 111 23799999999998755544 333332222 122344
Q ss_pred EeecCChHHHHHHHHHcCCceEEEecc-----cCCcccc---ccc------ccc-ccCCc-CCCCEEEEe-cHHhHHHHH
Q psy12699 944 CGEAGAVDLVKAIMMTTNEDVEVYKYK-----RLTELQI---EDS------AVG-SLDNI-QPGDCIVCF-SKNDVYTVS 1006 (1269)
Q Consensus 944 ~~s~~~~~~~~~l~~~~~~~~~v~~~~-----r~~~l~~---~~~------~~~-~l~~~-~~g~~iv~~-s~~~~~~l~ 1006 (1269)
..+++..+.+.++.............. +.....+ ... ... .++.. .+++++||+ ++++++.++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 555555566666654322111000000 0000000 000 000 01111 234666666 777788887
Q ss_pred HHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHH----
Q psy12699 1007 RGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQ---- 1082 (1269)
Q Consensus 1007 ~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v---- 1082 (1269)
+.|++.+.. ..+..+||++++.+|++.
T Consensus 240 ~~L~~~~~~-------------------------------------------------~~~~~~h~~~~~~~r~~~~~~~ 270 (358)
T TIGR01587 240 QQLKENAPE-------------------------------------------------EEIMLLHSRFTEKDRAKKEAEL 270 (358)
T ss_pred HHHHhhcCC-------------------------------------------------CeEEEEECCCCHHHHHHHHHHH
Confidence 777654321 127788999999999764
Q ss_pred hhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc
Q psy12699 1083 ASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1083 ~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
++.|+ +|+.+||||||++++|+|++++.||++.. | .++|+||+||+||.|++
T Consensus 271 ~~~f~--~~~~~ilvaT~~~~~GiDi~~~~vi~~~~--------------~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 271 LEEMK--KNEKFVIVATQVIEASLDISADVMITELA--------------P--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred HHHhc--CCCCeEEEECcchhceeccCCCEEEEcCC--------------C--HHHHHHHhccccCCCCC
Confidence 78899 89999999999999999999999998764 3 68999999999998875
No 79
>KOG1444|consensus
Probab=99.93 E-value=1.1e-25 Score=243.53 Aligned_cols=155 Identities=26% Similarity=0.442 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHH
Q psy12699 590 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGN 669 (1269)
Q Consensus 590 ~~~~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~ 669 (1269)
...+.++++||++|+.|+++||+++++|+||...+++++|+++|++++.+++++|+++++++++.++|+|+|++++|.+|
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~ 90 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM 90 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHHh-hhheeeeccCCCcce----ehhhhHhhcC
Q psy12699 670 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYIS-FRRYCLETQSLPVDL----HVVLSDIIQG 744 (1269)
Q Consensus 670 i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~~-~g~~~~~~~d~~f~~----~~~l~~i~~~ 744 (1269)
+++|..||+|+|||||+++|++||++++++|.+++++++++.+|+|++.| +|+.+++.+|.+||. |+..+++.++
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a 170 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA 170 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 999999999999998 7888888776
No 80
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.93 E-value=3.8e-24 Score=245.90 Aligned_cols=276 Identities=24% Similarity=0.339 Sum_probs=234.9
Q ss_pred HHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccchh
Q psy12699 77 FITIVNKSVLTS-YVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLP 155 (1269)
Q Consensus 77 ~~~~~nK~~l~~-~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s 155 (1269)
...++++.++.. ++.++++++++.|++...++..+...... .++.++..++.+++.++++.++..++|.|++|+|++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 344556666664 33447899999999999888776555433 233356667889999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCc----c------chHHHHHHHHHHHHHHHHHH
Q psy12699 156 MFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLG----Y------NFQGYVFVLLNNFLTAVNGV 225 (1269)
Q Consensus 156 ~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~----~------~~~G~ll~l~s~~~~a~~~v 225 (1269)
+++++|++.|+++++++++++++|++++++++++++++|++++...+.. . +..|+++++++.++.|+..+
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~ 171 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGV 171 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876531 1 13499999999999999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12699 226 YTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYL--SDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYN 303 (1269)
Q Consensus 226 ~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~ 303 (1269)
++++++ ++++.+++++++|+++++++..++..+. .+++.+.+.+.... +..+..+++.++++.+.+.+.+.++++.
T Consensus 172 ~qe~~~-~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~-p~~~~~l~~~s~~~~~g~~~i~~~~~~~ 249 (303)
T PF08449_consen 172 YQEKLF-KKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAH-PSVLLYLLLFSLTGALGQFFIFYLIKKF 249 (303)
T ss_pred HHHHHH-HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988 4568899999999999999999998888 67776666654433 3356677888888888888888999999
Q ss_pred CccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 304 SALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 304 s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
||++.+++.++++++++++|+++||+ ++++.+|+|+++++.|+.+|.+.++|+
T Consensus 250 ~al~~t~v~t~Rk~~sillS~~~f~~-~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 250 SALTTTIVTTLRKFLSILLSVIIFGH-PLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhcCC-cCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999998 669999999999999999999988765
No 81
>KOG0337|consensus
Probab=99.92 E-value=1.2e-25 Score=246.26 Aligned_cols=277 Identities=19% Similarity=0.147 Sum_probs=202.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc--------CCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS--------AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~--------~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~ 888 (1269)
+++|++++..|-||||||.+++..+.. +.+++++.||||||.|..+.++++|. ++.+++|+.+..++-
T Consensus 55 iLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf 134 (529)
T KOG0337|consen 55 ILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQF 134 (529)
T ss_pred eeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHH
Confidence 578888888888888888888333322 56999999999999999999988765 677788876665554
Q ss_pred CC--CCCCEEEEccccc--------cCCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 EE--KPANHVACTVEMT--------SVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 ~~--~~~~Ivv~T~e~~--------~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
.. .++||+++||..+ -.++.++++|+||+|++.++++......++..++...+.+.++++....+-++..
T Consensus 135 ~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fak 214 (529)
T KOG0337|consen 135 ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAK 214 (529)
T ss_pred HHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHH
Confidence 22 2799999997632 2388999999999999999999999999999998877777776666544444442
Q ss_pred H-cCCceEEE--ecccCCccc---cc-----c---ccccccCC-cCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCC
Q psy12699 959 T-TNEDVEVY--KYKRLTELQ---IE-----D---SAVGSLDN-IQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGS 1022 (1269)
Q Consensus 959 ~-~~~~~~v~--~~~r~~~l~---~~-----~---~~~~~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~ 1022 (1269)
. ..++..++ ...+..+.. +. + .....+.. +.+.+.++|+ ++..++.+...+...|..+..+|++
T Consensus 215 aGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iyss 294 (529)
T KOG0337|consen 215 AGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSS 294 (529)
T ss_pred ccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccc
Confidence 2 33333333 111111100 00 0 00011111 2233556666 7777888888888888887777777
Q ss_pred CChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcc
Q psy12699 1023 LPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAI 1102 (1269)
Q Consensus 1023 l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~ 1102 (1269)
++++.|.... .+|+ .++..+||.||++
T Consensus 295 lD~~aRk~~~---------------------------------------------------~~F~--~~k~~~lvvTdva 321 (529)
T KOG0337|consen 295 LDQEARKING---------------------------------------------------RDFR--GRKTSILVVTDVA 321 (529)
T ss_pred cChHhhhhcc---------------------------------------------------cccc--CCccceEEEehhh
Confidence 7777765554 7899 8999999999999
Q ss_pred cccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1103 GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1103 ~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
+||+|| -.+.|||||+ |.+..-|+||+||+.|+|+.|.+.....|.+.
T Consensus 322 aRG~diplldnvinyd~--------------p~~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDF--------------PPDDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred hccCCCccccccccccC--------------CCCCceEEEEecchhhccccceEEEEEecccc
Confidence 999999 9999999998 77788999999999999999988555555544
No 82
>KOG0926|consensus
Probab=99.92 E-value=1e-24 Score=253.75 Aligned_cols=328 Identities=19% Similarity=0.238 Sum_probs=206.2
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHh-cc
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSN-DR 871 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~-~~ 871 (1269)
+-++++||+||||||+| +||||+++ |.-+.+. ...+-+=|..|+|..|..+++|+. ++
T Consensus 271 n~vvIIcGeTGsGKTTQ-vPQFLYEA-Gf~s~~~-------------------~~~gmIGITqPRRVAaiamAkRVa~EL 329 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQ-VPQFLYEA-GFASEQS-------------------SSPGMIGITQPRRVAAIAMAKRVAFEL 329 (1172)
T ss_pred CCeEEEecCCCCCcccc-chHHHHHc-ccCCccC-------------------CCCCeeeecCchHHHHHHHHHHHHHHh
Confidence 45789999999999999 99999984 1110000 112344567799999999999984 55
Q ss_pred CCCceeeecceeeeccCCCCCCCEEEEcccc-------ccCCCCeeEEEEecccccccCCchhHHHHHHhccCcc-----
Q psy12699 872 GTPCDLITGEEKKFIQGEEKPANHVACTVEM-------TSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAK----- 939 (1269)
Q Consensus 872 g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~-------~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~----- 939 (1269)
|. .+--+|++.+++......+.|.++|-+. +.++.+|+++|+||||+++ .++++|+|+..+
T Consensus 330 ~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERS------vnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 330 GV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERS------VNTDILIGMLSRIVPLR 402 (1172)
T ss_pred cc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhcc------chHHHHHHHHHHHHHHH
Confidence 55 4555677777777666689999999552 2358999999999999995 667777665321
Q ss_pred -------------eEEEE-eecCChHHH--HHHHHHcCCceEE--------EecccCCccccccccc----cccCCcCCC
Q psy12699 940 -------------EIHVC-GEAGAVDLV--KAIMMTTNEDVEV--------YKYKRLTELQIEDSAV----GSLDNIQPG 991 (1269)
Q Consensus 940 -------------~~~l~-~s~~~~~~~--~~l~~~~~~~~~v--------~~~~r~~~l~~~~~~~----~~l~~~~~g 991 (1269)
...+| ++.+..++. +.++.....-+.+ .+..+.++..|..... ...+.+++|
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 12333 333333333 2222222111112 2344444555544322 234668999
Q ss_pred CEEEEe-cHHhHHHHHHHHHhcCCceE---------EEeCCCChhhHHHHhc-----ccCC------CCCCccchhhh--
Q psy12699 992 DCIVCF-SKNDVYTVSRGIESRGTEVA---------VIYGSLPPTTKLAQAS-----KFND------PDNPCKVMVAT-- 1048 (1269)
Q Consensus 992 ~~iv~~-s~~~~~~l~~~L~~~~~~~~---------~i~g~l~~~~r~~~~~-----~f~~------~~~~~~~l~~t-- 1048 (1269)
.++||+ +++++.++++.|++.-.... -.+..+.. .+..... +|.. .......+.-.
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~-~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKE-NPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccccc-chhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 999999 99999999999987522100 00000000 0000000 0100 00000011100
Q ss_pred -------hhh------ccCccccccc--------------cCCceeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcC
Q psy12699 1049 -------DAI------GMGLNFRGIE--------------SRGTEVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATD 1100 (1269)
Q Consensus 1049 -------~~~------~~~~~~~~l~--------------~~gi~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTd 1100 (1269)
... ..|..-.... ..-..|.++++-|+.+++. +.|. .|+|.+-++||||
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~---RVF~~~p~g~RLcVVaTN 638 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQM---RVFDEVPKGERLCVVATN 638 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhh---hhccCCCCCceEEEEecc
Confidence 000 0000000000 1124688999999999998 5555 6699999999999
Q ss_pred cccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccCCHhHHHHHhcccCCCCCc
Q psy12699 1101 AIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1101 v~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
+++++++| +|+|||++|..|.. ||. +|.+. ..++|.++.-||+|||||.|..
T Consensus 639 VAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG 695 (1172)
T KOG0926|consen 639 VAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG 695 (1172)
T ss_pred chhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC
Confidence 99999999 99999999999888 888 67664 8899999999999999998863
No 83
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.92 E-value=1e-24 Score=219.49 Aligned_cols=287 Identities=19% Similarity=0.337 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhh
Q psy12699 65 ISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVF 144 (1269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (1269)
...++.|+.+++.|++.||++++..||+.-..+.+.|-+.+.+.+.++++.+...++ ...++.|+|.+++....++.
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt 84 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYT 84 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHh
Confidence 356789999999999999999999899988889999999988888887777665543 66789999999999999999
Q ss_pred ccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC--------ccchHHHHHHHHH
Q psy12699 145 GLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL--------GYNFQGYVFVLLN 216 (1269)
Q Consensus 145 ~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~--------~~~~~G~ll~l~s 216 (1269)
+..+|+|++++.|++.|+++.+.++....+|++.+++-....+.++++..-+++.++|. ..| .|++|+...
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~N 163 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTN 163 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehh
Confidence 99999999999999999999999999999999999999999999999999999999887 334 699999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy12699 217 NFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSI 296 (1269)
Q Consensus 217 ~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~ 296 (1269)
++..+.+....|+..+ -.....++.+||.++++.++++.+++++|+|.+- ..........+.++.++|+++++.+++.
T Consensus 164 clssaafVL~mrkri~-ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl~svgiSy~s 241 (309)
T COG5070 164 CLSSAAFVLIMRKRIK-LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGLCSVGISYCS 241 (309)
T ss_pred hHhHHHHHHHHHHhhc-ccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999998663 3345678999999999999999999999988543 1111222223446889999999999999
Q ss_pred HHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCC
Q psy12699 297 MLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPA 358 (1269)
Q Consensus 297 ~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~ 358 (1269)
-||++.+|++++++++.+.+....+.|.++|+++. +..++..+.+-.++..+|...+.+++
T Consensus 242 aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~-nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 242 AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPV-NFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999966 99999999999999999998876543
No 84
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.90 E-value=9.7e-23 Score=236.44 Aligned_cols=289 Identities=11% Similarity=0.066 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-Hhhcc-cccCCCChhhhHhhhhhHHHH
Q psy12699 61 TIAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVG-KKLRF-IQFPNYHRNIFFELMPLPFIY 138 (1269)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~ 138 (1269)
..+++++++.-.+++.++..+.|.+++. |+++.. +.++|++++.+++..+ ...++ .+.++.+++.+..++..|++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~-~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSK-GLNIYP-FLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHC-CCCccH-HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 3677889999999999999999999975 888655 5567776666555433 32222 223334566667777777776
Q ss_pred HHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHH------hcccCCcceehhhHHHhhhceeeeec-CC--------
Q psy12699 139 LGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYV------LHIVPNRSVKITVGMMIGGAVIAALN-DL-------- 203 (1269)
Q Consensus 139 ~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~------~~ek~~~~~~~~i~l~~~Gv~l~~~~-~~-------- 203 (1269)
++...+.+++++|+|++.+.++.++.|++++++++++ ++||++++++++++++++|++++... +.
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 5666688999999999999999999999999999999 69999999999999999999876532 10
Q ss_pred ----------------ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Q psy12699 204 ----------------GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDY-AK 266 (1269)
Q Consensus 204 ----------------~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 266 (1269)
.....|.+++++|+++||+|++++|+..++ ..+....+++++.++.+.+++++...++. ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~ 246 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS 246 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 112559999999999999999999996632 23445667777776666666655554321 11
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhh
Q psy12699 267 VLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIG 346 (1269)
Q Consensus 267 ~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G 346 (1269)
.|.. .++...+ .+++.+++..+..+.+++++++.+|..++++.++.|++++++|++++||. +++.+++|+++++.|
T Consensus 247 ~~~~--~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~-lt~~~~iG~~LIl~G 322 (358)
T PLN00411 247 VWII--HFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS-LYLGCLIGGILITLG 322 (358)
T ss_pred ccee--ccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHH
Confidence 1211 1222322 35556665544444477899999999999999999999999999999995 599999999999999
Q ss_pred hhhhhhhccCC
Q psy12699 347 SILYTIVTFKP 357 (1269)
Q Consensus 347 ~~l~~~~~~~~ 357 (1269)
+++..+.+.++
T Consensus 323 v~l~~~~~~~~ 333 (358)
T PLN00411 323 FYAVMWGKANE 333 (358)
T ss_pred HHHHHhhhhhh
Confidence 99998866554
No 85
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=4e-23 Score=252.72 Aligned_cols=281 Identities=15% Similarity=0.121 Sum_probs=171.0
Q ss_pred cccCCceEEeccCCCCchHHHHHH----HhcC-CcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLSA-ESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~~-~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~~~~ 891 (1269)
++.+++.++++|||+|||+++... +.++ .+++|++||++|+.|+.+++++++. .+..+.|+... ..
T Consensus 126 ~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~-----~~ 200 (501)
T PHA02558 126 GLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAK-----DT 200 (501)
T ss_pred HHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCccc-----CC
Confidence 466788999999999999987322 2233 3899999999999999999988653 23234444222 12
Q ss_pred CCCEEEEcccccc-----CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHH---HHHHHHHcCCc
Q psy12699 892 PANHVACTVEMTS-----VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDL---VKAIMMTTNED 963 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~-----~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~---~~~l~~~~~~~ 963 (1269)
+.+|+|+|++.+. .+++++++|+||||++... .+..++..++.....+..++++.+. ...+....|+.
T Consensus 201 ~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i 276 (501)
T PHA02558 201 DAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANILQYVGLFGDI 276 (501)
T ss_pred CCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHHHHHHhhCCc
Confidence 5789999988443 3679999999999999643 5666666664333334444444321 11122233432
Q ss_pred eEEEeccc------CCccccccccc----cccCCcCCCC------EEEEe-cHH-hHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 964 VEVYKYKR------LTELQIEDSAV----GSLDNIQPGD------CIVCF-SKN-DVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 964 ~~v~~~~r------~~~l~~~~~~~----~~l~~~~~g~------~iv~~-s~~-~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
.......+ ..+..+..... ........++ .++-. .|+ .+..++..+.+.+.+..+++.....
T Consensus 277 ~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h 356 (501)
T PHA02558 277 FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEH 356 (501)
T ss_pred eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHH
Confidence 22111100 00000000000 0000000000 01011 111 1222333333344455554433222
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEc-Ccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT-DAIGM 1104 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaT-dv~~~ 1104 (1269)
.+.... .|...|.++..+||++++++|+++++.|+ +|+.+||||| +++++
T Consensus 357 ~~~L~~---------------------------~L~~~g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 357 GKPLYE---------------------------MLKKVYDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYGVFST 407 (501)
T ss_pred HHHHHH---------------------------HHHHcCCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcceecc
Confidence 222211 23345677999999999999999999999 8999999999 89999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHF 1153 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g 1153 (1269)
|+|+ ++++||++++ +.|...|+||+||++|.+..+
T Consensus 408 G~Dip~ld~vIl~~p--------------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIFAHP--------------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEEecC--------------CcchhhhhhhhhccccCCCCC
Confidence 9999 9999999887 567889999999999977654
No 86
>KOG0352|consensus
Probab=99.89 E-value=8e-23 Score=223.57 Aligned_cols=270 Identities=19% Similarity=0.204 Sum_probs=183.1
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC--------CCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG--------EEK 891 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~--------~~~ 891 (1269)
+...+|+.|++|||+||++|| +.++..+.-.+++.|..+|.....+.+..+.+++..+....+-.+.. +..
T Consensus 33 VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp 112 (641)
T KOG0352|consen 33 VKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKP 112 (641)
T ss_pred HhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCC
Confidence 345689999999999999999 77777778899999999999999999988777665544432221111 233
Q ss_pred CCCEEEEccccccC------------CCCeeEEEEecccccccCCchhHHHHHHhcc-------CcceEEEEeecCChHH
Q psy12699 892 PANHVACTVEMTSV------------NIPYEVAVIDEIQMMRDITRGWAWTRALLGL-------MAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~~------------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-------~~~~~~l~~s~~~~~~ 952 (1269)
+..+++-|||+... -..+.++|+||||+.+ ++|.++..-.+.| +.-..+-+.++.....
T Consensus 113 ~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS--QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~V 190 (641)
T KOG0352|consen 113 TIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS--QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKV 190 (641)
T ss_pred ceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh--hhccccCcchhhhhhHHhhCCCCceEEeecccChhH
Confidence 67899999996541 4468999999999995 4666554332222 1122222222222222
Q ss_pred HHHHHHH--cCCceEE-EecccCCcccccc------------------ccccc---cCCcC---CC-CEEEEecHHhHHH
Q psy12699 953 VKAIMMT--TNEDVEV-YKYKRLTELQIED------------------SAVGS---LDNIQ---PG-DCIVCFSKNDVYT 1004 (1269)
Q Consensus 953 ~~~l~~~--~~~~~~v-~~~~r~~~l~~~~------------------~~~~~---l~~~~---~g-~~iv~~s~~~~~~ 1004 (1269)
-++++.. ...++-+ ........+-|.. ..+.. ...-+ .| .++.|-+|++|++
T Consensus 191 qEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq 270 (641)
T KOG0352|consen 191 QEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQ 270 (641)
T ss_pred HHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHH
Confidence 3444422 2222221 1100001111110 00000 01111 12 2333448999999
Q ss_pred HHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhh
Q psy12699 1005 VSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQAS 1084 (1269)
Q Consensus 1005 l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~ 1084 (1269)
++-.+...|. +...||+||...||.++.+
T Consensus 271 ~AI~l~~~Gi---------------------------------------------------~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 271 VAIMLEIAGI---------------------------------------------------PAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred HHHHhhhcCc---------------------------------------------------chHHHhcccccchhHHHHH
Confidence 8887766554 4667899999999999999
Q ss_pred hccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCC
Q psy12699 1085 KFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGS 1159 (1269)
Q Consensus 1085 ~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~ 1159 (1269)
++. +++..|++||.-++||+|- +|++||+++. |.+.+-|+|..|||||+|...+|-+++
T Consensus 300 ~WM--~~~~PvI~AT~SFGMGVDKp~VRFViHW~~--------------~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 300 KWM--NNEIPVIAATVSFGMGVDKPDVRFVIHWSP--------------SQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHh--cCCCCEEEEEeccccccCCcceeEEEecCc--------------hhhhHHHHHhccccccCCCccceeeee
Confidence 999 9999999999999999999 9999999998 788999999999999999999994443
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.9e-22 Score=225.76 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=77.3
Q ss_pred CceEEeccCCCCchHHHHHHHh----c-CCcEEEEcchHHHHHHHHHHHhc-cCC---CceeeecceeeeccCCCC-CCC
Q psy12699 825 PLKIHAGPTNSGKTYHALERFL----S-AESGVYCGPLKMLATEVFKKSND-RGT---PCDLITGEEKKFIQGEEK-PAN 894 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~----~-~~~~lil~Ptr~La~Qi~~~l~~-~g~---~v~~~~G~~~~~~~~~~~-~~~ 894 (1269)
+|.+++.|||-|||.+|..-+. . ++++++++|||-|+.|+++.+.+ .|. .+..++|..+..+....| ..+
T Consensus 30 ~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~k 109 (542)
T COG1111 30 KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKK 109 (542)
T ss_pred cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCC
Confidence 4999999999999999833222 2 45899999999999999999966 555 466899987765555555 789
Q ss_pred EEEEccccccC--------CCCeeEEEEeccccc
Q psy12699 895 HVACTVEMTSV--------NIPYEVAVIDEIQMM 920 (1269)
Q Consensus 895 Ivv~T~e~~~~--------l~~~~~lViDEah~~ 920 (1269)
|+|+||+...+ +.++.++|+||||+-
T Consensus 110 VfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 110 VFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred EEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 99999995432 779999999999998
No 88
>KOG0920|consensus
Probab=99.88 E-value=1.4e-21 Score=240.52 Aligned_cols=287 Identities=16% Similarity=0.191 Sum_probs=189.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHh-c
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSN-D 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~-~ 870 (1269)
++++++++|+||||||+| +||++++.. +.+ ....++++.+|+|.-|..+++|+. +
T Consensus 187 ~~qVvvIsGeTGcGKTTQ-vpQfiLd~~-~~~----------------------~~~~~IicTQPRRIsAIsvAeRVa~E 242 (924)
T KOG0920|consen 187 ENQVVVISGETGCGKTTQ-VPQFILDEA-IES----------------------GAACNIICTQPRRISAISVAERVAKE 242 (924)
T ss_pred hCceEEEeCCCCCCchhh-hhHHHHHHH-Hhc----------------------CCCCeEEecCCchHHHHHHHHHHHHH
Confidence 568999999999999999 666655520 000 023567888899999999999994 5
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccc-------ccCCCCeeEEEEeccccccc-CCchhHHHHHHhcc-CcceE
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEM-------TSVNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGL-MAKEI 941 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~-------~~~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l-~~~~~ 941 (1269)
.+..++-.+|++.+.+......+.+.+||... ...+.++.++|+||+|++.- .++--..-+.++.. +.=.+
T Consensus 243 R~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 243 RGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred hccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 77788888898888777666679999999552 23588999999999999932 22222222333333 22355
Q ss_pred EEEeecCChHHHHHHHHHcCCceEEEecccCCccccccccc---------------------------------------
Q psy12699 942 HVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAV--------------------------------------- 982 (1269)
Q Consensus 942 ~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~--------------------------------------- 982 (1269)
.+|+++...+.+.+++..+. .+.+.....++...+.++.+
T Consensus 323 ILMSAT~dae~fs~YF~~~p-vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 323 ILMSATLDAELFSDYFGGCP-VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred EEeeeecchHHHHHHhCCCc-eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 66766666666666664211 11121111111111111000
Q ss_pred ---ccc-CCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccc
Q psy12699 983 ---GSL-DNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNF 1057 (1269)
Q Consensus 983 ---~~l-~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~ 1057 (1269)
..+ +.-..|.++||. +-.++..+.+.|+....- .+
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f--------------------~~-------------------- 441 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF--------------------AD-------------------- 441 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc--------------------cc--------------------
Confidence 000 011234455555 666666666655443211 00
Q ss_pred cccccCCceeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCcc--cc
Q psy12699 1058 RGIESRGTEVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGER--EI 1131 (1269)
Q Consensus 1058 ~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~--~~ 1131 (1269)
....-+.++|+.|+.+|++ ..|+ .|.|.+||++|||++|.+|+| +|-+|||.+..|.. ||+ .+.. ..
T Consensus 442 ----~~~~~ilplHs~~~s~eQ~---~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~ 514 (924)
T KOG0920|consen 442 ----SLKFAILPLHSSIPSEEQQ---AVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLL 514 (924)
T ss_pred ----ccceEEEeccccCChHHHH---HhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhhe
Confidence 0112378889999999999 5566 668999999999999999999 99999999999988 887 2322 37
Q ss_pred ccCCHhHHHHHhcccCCCC
Q psy12699 1132 DLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1132 ~p~s~~~y~QR~GRaGR~G 1150 (1269)
.|.|.++..||+|||||..
T Consensus 515 ~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 515 SWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred eeccccchHHhcccccCcc
Confidence 7999999999999999954
No 89
>KOG0351|consensus
Probab=99.88 E-value=2.8e-22 Score=251.38 Aligned_cols=273 Identities=22% Similarity=0.241 Sum_probs=197.0
Q ss_pred ccccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC--------CC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG--------EE 890 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~--------~~ 890 (1269)
..+.|+|+++.+|||.||++|| +.+++.++-.+++.|...|.+.+...+...+++...+.+++...++. .+
T Consensus 275 ~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~ 354 (941)
T KOG0351|consen 275 ATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGN 354 (941)
T ss_pred HHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCC
Confidence 4689999999999999999999 77888888999999999999999999988888888888775543221 12
Q ss_pred CCCCEEEEccccccC----------CCC---eeEEEEecccccccCCchhHHHHH-------HhccCcceEEEEeecCCh
Q psy12699 891 KPANHVACTVEMTSV----------NIP---YEVAVIDEIQMMRDITRGWAWTRA-------LLGLMAKEIHVCGEAGAV 950 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~~----------l~~---~~~lViDEah~~~d~~rg~~~~~~-------ll~l~~~~~~l~~s~~~~ 950 (1269)
...+|++.|||+... +.. +.++||||||+.+ ++|+.+..- ....+.-.++-+.+++..
T Consensus 355 ~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS--qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~ 432 (941)
T KOG0351|consen 355 PIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS--QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATE 432 (941)
T ss_pred CeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh--hhcccccHHHHHHHHHHhhCCCCCeEEeehhccH
Confidence 267999999995541 444 8999999999995 355544222 122222233333333333
Q ss_pred HHHHHHHHHcCCc-eE-EE-ecccCCccccccc----------cccccCCcCCC-C-EEEEecHHhHHHHHHHHHhcCCc
Q psy12699 951 DLVKAIMMTTNED-VE-VY-KYKRLTELQIEDS----------AVGSLDNIQPG-D-CIVCFSKNDVYTVSRGIESRGTE 1015 (1269)
Q Consensus 951 ~~~~~l~~~~~~~-~~-v~-~~~r~~~l~~~~~----------~~~~l~~~~~g-~-~iv~~s~~~~~~l~~~L~~~~~~ 1015 (1269)
...+++....+-. .. +. ...|+ .+.|.-. ....+....++ . +|.|.++++|+.++..|++.+.+
T Consensus 433 ~v~~DIi~~L~l~~~~~~~~sfnR~-NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~ 511 (941)
T KOG0351|consen 433 RVREDVIRSLGLRNPELFKSSFNRP-NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS 511 (941)
T ss_pred HHHHHHHHHhCCCCcceecccCCCC-CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh
Confidence 3345555443211 11 11 11121 1211111 01112222333 3 34444999999999999887643
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeE
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1095 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~V 1095 (1269)
...||+||+..+|+.+.++|. .++++|
T Consensus 512 ---------------------------------------------------a~~YHAGl~~~~R~~Vq~~w~--~~~~~V 538 (941)
T KOG0351|consen 512 ---------------------------------------------------AAFYHAGLPPKERETVQKAWM--SDKIRV 538 (941)
T ss_pred ---------------------------------------------------hHhhhcCCCHHHHHHHHHHHh--cCCCeE
Confidence 567899999999999999999 899999
Q ss_pred EEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1096 MVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1096 LVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|||=+++||||. +|+.||+|++ |-|.+.|+|-+|||||+|...+|+++..+.
T Consensus 539 ivATVAFGMGIdK~DVR~ViH~~l--------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIHYSL--------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EEEEeeccCCCCCCceeEEEECCC--------------chhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999999 9999999999 889999999999999999999997777665
No 90
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.87 E-value=2e-21 Score=227.55 Aligned_cols=254 Identities=13% Similarity=0.171 Sum_probs=145.4
Q ss_pred cccCC--ceEEeccCCCCchHHHHHHHh-cCCcEEEEcchHHHHHHHHHHHhcc--------CCCceeeecceeee----
Q psy12699 821 VYCGP--LKIHAGPTNSGKTYHALERFL-SAESGVYCGPLKMLATEVFKKSNDR--------GTPCDLITGEEKKF---- 885 (1269)
Q Consensus 821 l~~g~--~vlv~apTGsGKTl~~l~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~--------g~~v~~~~G~~~~~---- 885 (1269)
+.+++ +++++||||||||.+++.+++ ...+++|++|+++|++|++++++++ +..+..++|.....
T Consensus 9 ~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~ 88 (357)
T TIGR03158 9 LQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEY 88 (357)
T ss_pred HHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHh
Confidence 35555 378899999999999955544 4568999999999999999988653 23344556641110
Q ss_pred c-------cC-----------CCCCCCEEEEccccccC----------------CCCeeEEEEecccccccCCchh-H--
Q psy12699 886 I-------QG-----------EEKPANHVACTVEMTSV----------------NIPYEVAVIDEIQMMRDITRGW-A-- 928 (1269)
Q Consensus 886 ~-------~~-----------~~~~~~Ivv~T~e~~~~----------------l~~~~~lViDEah~~~d~~rg~-~-- 928 (1269)
. .. ....++|+++||+++.. +.+++++|+||+|.+...+... .
T Consensus 89 ~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~ 168 (357)
T TIGR03158 89 ANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFL 168 (357)
T ss_pred hhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhh
Confidence 0 00 01246778888875541 4789999999999995422211 1
Q ss_pred --HHHHHhccC-cceEEEEeecCChHHHHHHHHH--cCCceEEEecc-------------------cCC--cccc--cc-
Q psy12699 929 --WTRALLGLM-AKEIHVCGEAGAVDLVKAIMMT--TNEDVEVYKYK-------------------RLT--ELQI--ED- 979 (1269)
Q Consensus 929 --~~~~ll~l~-~~~~~l~~s~~~~~~~~~l~~~--~~~~~~v~~~~-------------------r~~--~l~~--~~- 979 (1269)
....+.... ..++.+++++.+....+.+... .+.++...... |++ ++.. ..
T Consensus 169 l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 248 (357)
T TIGR03158 169 LAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPA 248 (357)
T ss_pred hHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeC
Confidence 111111111 2344444444444434444332 33333221111 000 0000 00
Q ss_pred -----c----ccc----ccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccch
Q psy12699 980 -----S----AVG----SLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1045 (1269)
Q Consensus 980 -----~----~~~----~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l 1045 (1269)
. ..+ .++..+.+.++||+ +++.++.+++.|++.+.
T Consensus 249 ~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~------------------------------- 297 (357)
T TIGR03158 249 PDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGL------------------------------- 297 (357)
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCC-------------------------------
Confidence 0 000 00001122344444 55555555555543221
Q ss_pred hhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCccc
Q psy12699 1046 VATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNE 1125 (1269)
Q Consensus 1046 ~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~ 1125 (1269)
++.+..+||.+++++|++. ++.+||||||+++||||++.++|| ++
T Consensus 298 ------------------~~~~~~l~g~~~~~~R~~~--------~~~~iLVaTdv~~rGiDi~~~~vi-~~-------- 342 (357)
T TIGR03158 298 ------------------GDDIGRITGFAPKKDRERA--------MQFDILLGTSTVDVGVDFKRDWLI-FS-------- 342 (357)
T ss_pred ------------------CceEEeeecCCCHHHHHHh--------ccCCEEEEecHHhcccCCCCceEE-EC--------
Confidence 2236778999999988632 357899999999999999444777 43
Q ss_pred CCccccccCCHhHHHHHhcccC
Q psy12699 1126 KGEREIDLISVSAALQIAGRAG 1147 (1269)
Q Consensus 1126 ~G~~~~~p~s~~~y~QR~GRaG 1147 (1269)
|.+.++|+||+||+|
T Consensus 343 -------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -------ARDAAAFWQRLGRLG 357 (357)
T ss_pred -------CCCHHHHhhhcccCC
Confidence 456899999999998
No 91
>PRK09401 reverse gyrase; Reviewed
Probab=99.87 E-value=6.2e-22 Score=258.14 Aligned_cols=261 Identities=16% Similarity=0.152 Sum_probs=160.3
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCC----Cceeeecceee-eccC--
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKK-FIQG-- 888 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~-~~~~-- 888 (1269)
.++.|+|++++||||||||..++.. ..++.+++|++|||+|+.|+++++++++. .+..++|+... ..+.
T Consensus 91 ~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~ 170 (1176)
T PRK09401 91 RLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEE 170 (1176)
T ss_pred HHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHH
Confidence 3578999999999999999755221 12378999999999999999999987654 44445554321 0010
Q ss_pred -----CCCCCCEEEEcccccc----C--CCCeeEEEEecccccccCC-----------ch-hHHHHHHhccCc-------
Q psy12699 889 -----EEKPANHVACTVEMTS----V--NIPYEVAVIDEIQMMRDIT-----------RG-WAWTRALLGLMA------- 938 (1269)
Q Consensus 889 -----~~~~~~Ivv~T~e~~~----~--l~~~~~lViDEah~~~d~~-----------rg-~~~~~~ll~l~~------- 938 (1269)
....++|+|+||+.+. . ..+++++|+||||++++.+ +. .....++..++.
T Consensus 171 ~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~ 250 (1176)
T PRK09401 171 FLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEI 250 (1176)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchh
Confidence 1235899999998443 1 3469999999999998733 32 233334333321
Q ss_pred -----------------ceEEEEeecCChHH-HHH-HHHHcCCceEEEec---ccCCccccc------cccccccCCcCC
Q psy12699 939 -----------------KEIHVCGEAGAVDL-VKA-IMMTTNEDVEVYKY---KRLTELQIE------DSAVGSLDNIQP 990 (1269)
Q Consensus 939 -----------------~~~~l~~s~~~~~~-~~~-l~~~~~~~~~v~~~---~r~~~l~~~------~~~~~~l~~~~~ 990 (1269)
+.+++++++|..+. .+. ++... -.+.+... .+.+...+. ......+..+.
T Consensus 251 ~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~l-l~~~v~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~- 328 (1176)
T PRK09401 251 YEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFREL-LGFEVGSPVFYLRNIVDSYIVDEDSVEKLVELVKRLG- 328 (1176)
T ss_pred hhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhcc-ceEEecCcccccCCceEEEEEcccHHHHHHHHHHhcC-
Confidence 34566666666542 222 22111 00111110 010000000 00111112222
Q ss_pred CCEEEEe-cHHh---HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCce
Q psy12699 991 GDCIVCF-SKND---VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTE 1066 (1269)
Q Consensus 991 g~~iv~~-s~~~---~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~ 1066 (1269)
++.+||+ +++. ++.+++.|++.|. +
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi---------------------------------------------------~ 357 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGI---------------------------------------------------N 357 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCC---------------------------------------------------c
Confidence 2344444 4333 6666666665544 4
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE----cCcccccccc-C-ceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA----TDAIGMGLNL-S-IRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa----Tdv~~~GIDi-~-v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
+..+||+| + +.+++|+ +|+++|||| ||+++||||+ + |++|||||.+++.++ ....+.+.
T Consensus 358 v~~~hg~l---~--~~l~~F~--~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~--------~~~~~~~~ 422 (1176)
T PRK09401 358 AELAISGF---E--RKFEKFE--EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS--------LEEELAPP 422 (1176)
T ss_pred EEEEeCcH---H--HHHHHHH--CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe--------ccccccCH
Confidence 67778888 2 2249999 999999999 6999999999 8 899999999775411 12356789
Q ss_pred HHhcccCC
Q psy12699 1141 QIAGRAGR 1148 (1269)
Q Consensus 1141 QR~GRaGR 1148 (1269)
||.||+-+
T Consensus 423 ~~~~r~~~ 430 (1176)
T PRK09401 423 FLLLRLLS 430 (1176)
T ss_pred HHHHHHHh
Confidence 99999954
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.6e-21 Score=238.19 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=76.5
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc----Cce-----EEEEcCCCCCCcccCCccc
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL----SIR-----RVIFYSLIKPSLNEKGERE 1130 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi----~v~-----~VI~~~~~k~~~~~~G~~~ 1130 (1269)
|...|+++..+||.+.++++..+..+++ +| +|+||||+++||+|| +|+ +||+++.
T Consensus 448 L~~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------ 511 (790)
T PRK09200 448 LDEAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------ 511 (790)
T ss_pred HHHCCCCEEEecCCccHHHHHHHHHcCC--CC--eEEEEccchhcCcCCCcccccccccCcEEEeccC------------
Confidence 4456899999999999999988888877 55 799999999999999 687 9999998
Q ss_pred cccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1131 IDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1131 ~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
|.+...|.||+|||||.|.+|.++.+..++.+
T Consensus 512 --p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 512 --MESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred --CCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 88999999999999999999999776666533
No 93
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=1.4e-21 Score=259.53 Aligned_cols=273 Identities=11% Similarity=0.102 Sum_probs=162.9
Q ss_pred cccCCceEEeccCCCCchHHHH-HH---HhcCCcEEEEcchHHHHHHHHHHHhccC------CCceeeecceeeeccC--
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL-ER---FLSAESGVYCGPLKMLATEVFKKSNDRG------TPCDLITGEEKKFIQG-- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l-~~---l~~~~~~lil~Ptr~La~Qi~~~l~~~g------~~v~~~~G~~~~~~~~-- 888 (1269)
+++|+|++++||||||||++++ .+ ..++.+++|++|||+|+.|+++++++++ .++..++|+....++.
T Consensus 91 il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~ 170 (1638)
T PRK14701 91 ILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF 170 (1638)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH
Confidence 5789999999999999998652 11 1247799999999999999999998743 3445566765443321
Q ss_pred ----CCCCCCEEEEccccccC------CCCeeEEEEeccccccc-----------CCchhHHHH----HH----------
Q psy12699 889 ----EEKPANHVACTVEMTSV------NIPYEVAVIDEIQMMRD-----------ITRGWAWTR----AL---------- 933 (1269)
Q Consensus 889 ----~~~~~~Ivv~T~e~~~~------l~~~~~lViDEah~~~d-----------~~rg~~~~~----~l---------- 933 (1269)
....++|+|+||+.+.. ..+++++|+||||++++ .++...... ++
T Consensus 171 ~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~ 250 (1638)
T PRK14701 171 LERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIED 250 (1638)
T ss_pred HHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccch
Confidence 12358999999995442 25799999999999976 344333322 11
Q ss_pred ------------hccCcc-eEEEEeecCChH--HHHHHHHHcCCceEEEecccCCccc-----cc-------cccccccC
Q psy12699 934 ------------LGLMAK-EIHVCGEAGAVD--LVKAIMMTTNEDVEVYKYKRLTELQ-----IE-------DSAVGSLD 986 (1269)
Q Consensus 934 ------------l~l~~~-~~~l~~s~~~~~--~~~~l~~~~~~~~~v~~~~r~~~l~-----~~-------~~~~~~l~ 986 (1269)
..++.. ++.++++++..+ ....++. +...+........+. +. ......+.
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~---~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~ 327 (1638)
T PRK14701 251 AMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR---ELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLK 327 (1638)
T ss_pred hhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh---cCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHH
Confidence 112222 335556666553 2233321 222221111000000 00 00011111
Q ss_pred CcCCCCEEEEe-cHHh---HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccccccc
Q psy12699 987 NIQPGDCIVCF-SKND---VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIES 1062 (1269)
Q Consensus 987 ~~~~g~~iv~~-s~~~---~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~ 1062 (1269)
... ...+||+ +++. ++++++.|.+
T Consensus 328 ~~g-~~gIVF~~t~~~~e~ae~la~~L~~--------------------------------------------------- 355 (1638)
T PRK14701 328 KLG-KGGLIFVPIDEGAEKAEEIEKYLLE--------------------------------------------------- 355 (1638)
T ss_pred hCC-CCeEEEEeccccchHHHHHHHHHHH---------------------------------------------------
Confidence 121 1233333 3332 3444444444
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEc----Ccccccccc-C-ceEEEEcCCCCCCcccCCccc--cccC
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT----DAIGMGLNL-S-IRRVIFYSLIKPSLNEKGERE--IDLI 1134 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaT----dv~~~GIDi-~-v~~VI~~~~~k~~~~~~G~~~--~~p~ 1134 (1269)
.|+++..+||+ |...+++|+ +|+++||||| |+++||||+ + |++|||+|++|+.++-....+ ..-.
T Consensus 356 ~Gi~a~~~h~~-----R~~~l~~F~--~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~ 428 (1638)
T PRK14701 356 DGFKIELVSAK-----NKKGFDLFE--EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRIL 428 (1638)
T ss_pred CCCeEEEecch-----HHHHHHHHH--cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhh
Confidence 35557788884 788889999 9999999999 599999999 7 999999999886522111100 0000
Q ss_pred CHhHHHHHhcccCCCCCcccc
Q psy12699 1135 SVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1135 s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
......++.||+||.|..+.+
T Consensus 429 ~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 429 GLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred cchHHHHHhhhhcccCCcchh
Confidence 012234566999999987665
No 94
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.3e-20 Score=228.45 Aligned_cols=85 Identities=21% Similarity=0.132 Sum_probs=70.2
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-Cce--------EEEEcCCCCCCcccCCccc
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIR--------RVIFYSLIKPSLNEKGERE 1130 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~--------~VI~~~~~k~~~~~~G~~~ 1130 (1269)
|...|+++..+||+++.+++..+..+++ +.+|+||||+++||+|| ... +||+++.
T Consensus 493 L~~~gi~~~~Lhg~~~~rE~~ii~~ag~----~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~------------ 556 (656)
T PRK12898 493 LREAGLPHQVLNAKQDAEEAAIVARAGQ----RGRITVATNMAGRGTDIKLEPGVAARGGLHVILTER------------ 556 (656)
T ss_pred HHHCCCCEEEeeCCcHHHHHHHHHHcCC----CCcEEEEccchhcccCcCCccchhhcCCCEEEEcCC------------
Confidence 4467899999999977666655554444 45699999999999999 343 8999998
Q ss_pred cccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1131 IDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1131 ~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|.+...|.||+|||||.|.+|.++.+..++
T Consensus 557 --P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 557 --HDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred --CCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 889999999999999999999997776665
No 95
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=243.80 Aligned_cols=299 Identities=18% Similarity=0.143 Sum_probs=185.8
Q ss_pred cccccCCceEEeccCCCCchHHHHHHH----hcC--CcEEEEcchHHHHHHHHHHHhcc----C--CCceeeecceeeec
Q psy12699 819 SGVYCGPLKIHAGPTNSGKTYHALERF----LSA--ESGVYCGPLKMLATEVFKKSNDR----G--TPCDLITGEEKKFI 886 (1269)
Q Consensus 819 ~~l~~g~~vlv~apTGsGKTl~~l~~l----~~~--~~~lil~Ptr~La~Qi~~~l~~~----g--~~v~~~~G~~~~~~ 886 (1269)
+.+.+|||++|+.|||||||.+|+..+ +++ .++|++-||++||+.+.++++++ + +..+..+|+....+
T Consensus 80 ~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~ 159 (851)
T COG1205 80 RLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEE 159 (851)
T ss_pred HHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHH
Confidence 446789999999999999999994443 343 46699999999999999999763 3 46677888876544
Q ss_pred cC--CCCCCCEEEEccccccC------------CCCeeEEEEecccccccCCchhHHHHHHhcc-------CcceEEEEe
Q psy12699 887 QG--EEKPANHVACTVEMTSV------------NIPYEVAVIDEIQMMRDITRGWAWTRALLGL-------MAKEIHVCG 945 (1269)
Q Consensus 887 ~~--~~~~~~Ivv~T~e~~~~------------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-------~~~~~~l~~ 945 (1269)
.+ -..+++|++++|+|++. ++++++||+||+|-. +..+|......+..| ..+.+.++.
T Consensus 160 r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~ 238 (851)
T COG1205 160 RRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRYGSPLQIICT 238 (851)
T ss_pred HHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhccCCCceEEEE
Confidence 32 24479999999998762 778999999999988 334555443333222 224455555
Q ss_pred ecCChHHHHHHHHHcCCceEE-Ee-cccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 946 EAGAVDLVKAIMMTTNEDVEV-YK-YKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 946 s~~~~~~~~~l~~~~~~~~~v-~~-~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
+++....-+...+..+.++.. .. ...+....+.............+ +.-....+...++..+-+.+.+..+.+.+-
T Consensus 239 SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~--~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr 316 (851)
T COG1205 239 SATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAES--IRRSALAELATLAALLVRNGIQTLVFFRSR 316 (851)
T ss_pred eccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhh--cccchHHHHHHHHHHHHHcCceEEEEEehh
Confidence 444332222222333444343 11 11111110000000000000000 101122334444444545555554444333
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
.+.++...-.. ..+. ... ......+..|||+|..++|.+++..|+ .|+.+++++|++++
T Consensus 317 ~~~e~~~~~~~--------~~~~----------~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~--~g~~~~~~st~Ale 375 (851)
T COG1205 317 KQVELLYLSPR--------RRLV----------REG-GKLLDAVSTYRAGLHREERRRIEAEFK--EGELLGVIATNALE 375 (851)
T ss_pred hhhhhhhhchh--------HHHh----------hcc-hhhhhheeeccccCCHHHHHHHHHHHh--cCCccEEecchhhh
Confidence 22222210000 0000 000 111234889999999999999999999 99999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccC-CHhHHHHHhcccCCCCCcccc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLI-SVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~-s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
-|||| +++.||.++. |. +..++.||+||+||.++.+..
T Consensus 376 lgidiG~ldavi~~g~--------------P~~s~~~~~Q~~GRaGR~~~~~l~ 415 (851)
T COG1205 376 LGIDIGSLDAVIAYGY--------------PGVSVLSFRQRAGRAGRRGQESLV 415 (851)
T ss_pred hceeehhhhhHhhcCC--------------CCchHHHHHHhhhhccCCCCCceE
Confidence 99999 9999999998 77 899999999999999966554
No 96
>KOG0925|consensus
Probab=99.85 E-value=7.8e-21 Score=211.35 Aligned_cols=280 Identities=21% Similarity=0.230 Sum_probs=188.5
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHh-c
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSN-D 870 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~-~ 870 (1269)
++++++++|+||||||+| +|+|..+. .+.....+.+..|+|..|.++++|+. +
T Consensus 61 ~nQ~~v~vGetgsGKttQ-iPq~~~~~-------------------------~~~~~~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 61 NNQIIVLVGETGSGKTTQ-IPQFVLEY-------------------------ELSHLTGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred cCceEEEEecCCCCcccc-CcHHHHHH-------------------------HHhhccceeecCchHHHHHHHHHHHHHH
Confidence 678999999999999999 99994442 11223566778899999999999985 5
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccccccCCchhHHHHHHhccCc-----
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA----- 938 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~----- 938 (1269)
+....+--+|+..++++....++-+-+||-+|+- .+.+++++|+||||++. .-++++.|+.+
T Consensus 115 MDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERt------lATDiLmGllk~v~~~ 188 (699)
T KOG0925|consen 115 MDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERT------LATDILMGLLKEVVRN 188 (699)
T ss_pred hccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhh------HHHHHHHHHHHHHHhh
Confidence 7777777778877777655555566778855432 48999999999999983 34555555432
Q ss_pred ---ceEEEEeecCChHHHHHHHHHcCCceEEEecccCCccccc--------cccccc----cCCcCCCCEEEEe-cHHhH
Q psy12699 939 ---KEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIE--------DSAVGS----LDNIQPGDCIVCF-SKNDV 1002 (1269)
Q Consensus 939 ---~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~--------~~~~~~----l~~~~~g~~iv~~-s~~~~ 1002 (1269)
-.+.+++++...+.++.++.... -+.+.. ..++++.|. +..+.. ...-.+|++++|. +.+++
T Consensus 189 rpdLk~vvmSatl~a~Kfq~yf~n~P-ll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeI 266 (699)
T KOG0925|consen 189 RPDLKLVVMSATLDAEKFQRYFGNAP-LLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEI 266 (699)
T ss_pred CCCceEEEeecccchHHHHHHhCCCC-eeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHH
Confidence 24556666666666666653211 111211 222222222 111111 1222588999998 88999
Q ss_pred HHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHH
Q psy12699 1003 YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQ 1082 (1269)
Q Consensus 1003 ~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v 1082 (1269)
+..++.+..++.... + +. -.+.|.++| +.+++
T Consensus 267 e~aC~~i~re~~~L~-------~---------------~~--------------------g~l~v~PLy----P~~qq-- 298 (699)
T KOG0925|consen 267 EDACRKISREVDNLG-------P---------------QV--------------------GPLKVVPLY----PAQQQ-- 298 (699)
T ss_pred HHHHHHHHHHHHhhc-------c---------------cc--------------------CCceEEecC----chhhc--
Confidence 999998875443210 0 00 012377777 44444
Q ss_pred hhhccC------CCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-cccCCcc---ccccCCHhHHHHHhcccCCCCC
Q psy12699 1083 ASKFND------PDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNEKGER---EIDLISVSAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1083 ~~~F~~------~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~~G~~---~~~p~s~~~y~QR~GRaGR~G~ 1151 (1269)
+-|++ +.-.+||+|+|++++..+.+ +|.+||+.|+.|.+ ||+.=+- -.+|+|+++..||+|||||...
T Consensus 299 -~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p 377 (699)
T KOG0925|consen 299 -RIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 377 (699)
T ss_pred -cccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC
Confidence 33441 12257999999999999999 99999999999988 9983322 2889999999999999999654
Q ss_pred cccc
Q psy12699 1152 HFEK 1155 (1269)
Q Consensus 1152 ~g~~ 1155 (1269)
|.|
T Consensus 378 -Gkc 380 (699)
T KOG0925|consen 378 -GKC 380 (699)
T ss_pred -Cce
Confidence 445
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=5.9e-20 Score=223.64 Aligned_cols=290 Identities=20% Similarity=0.139 Sum_probs=178.0
Q ss_pred eEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 827 KIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 827 vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
.++.++||+|||+++..+ .+.+.++.+++||++||.|.++.+.. +|.++++++|+....++.....++|+++
T Consensus 72 ~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~~dIvyG 151 (745)
T TIGR00963 72 KIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYG 151 (745)
T ss_pred ceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcCCCEEEE
Confidence 489999999999988322 23478899999999999999988764 5778899998866544444447899999
Q ss_pred ccccc---------------cCCCCeeEEEEecccccc-cCCchhHH---------------HHHHhccCcc--------
Q psy12699 899 TVEMT---------------SVNIPYEVAVIDEIQMMR-DITRGWAW---------------TRALLGLMAK-------- 939 (1269)
Q Consensus 899 T~e~~---------------~~l~~~~~lViDEah~~~-d~~rg~~~---------------~~~ll~l~~~-------- 939 (1269)
|+.-+ ..+++++++||||+|.++ |..|-... +.+...+..+
T Consensus 152 T~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~ 231 (745)
T TIGR00963 152 TNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEK 231 (745)
T ss_pred CCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecC
Confidence 97733 126789999999999984 33322110 1111111100
Q ss_pred --eEEEEe----------------ecCChHHHHHHH--------------------------HHcCC-------------
Q psy12699 940 --EIHVCG----------------EAGAVDLVKAIM--------------------------MTTNE------------- 962 (1269)
Q Consensus 940 --~~~l~~----------------s~~~~~~~~~l~--------------------------~~~~~------------- 962 (1269)
.+.+.. ......+...+. ..+|+
T Consensus 232 ~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQ 311 (745)
T TIGR00963 232 NRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQ 311 (745)
T ss_pred CCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHH
Confidence 000000 000000100000 00111
Q ss_pred ------ceEEEe----------------cccCCccc-------------ccc-----ccccccCCcCCCCEEEEe-cHHh
Q psy12699 963 ------DVEVYK----------------YKRLTELQ-------------IED-----SAVGSLDNIQPGDCIVCF-SKND 1001 (1269)
Q Consensus 963 ------~~~v~~----------------~~r~~~l~-------------~~~-----~~~~~l~~~~~g~~iv~~-s~~~ 1001 (1269)
.+.+.. |.+..-++ |.- ++..........+.+ +. ..+.
T Consensus 312 aiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i-~~t~~~k 390 (745)
T TIGR00963 312 AIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLV-YKTEEEK 390 (745)
T ss_pred HHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeE-EcCHHHH
Confidence 111110 11110000 000 000001111122333 43 3333
Q ss_pred HHHHHHHH---HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHh
Q psy12699 1002 VYTVSRGI---ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTT 1078 (1269)
Q Consensus 1002 ~~~l~~~L---~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~e 1078 (1269)
...+.+.+ .+.+..+.+...+....+..... |...|++...+||+ +.+
T Consensus 391 ~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~---------------------------L~~~gi~~~~Lna~--q~~ 441 (745)
T TIGR00963 391 WKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNL---------------------------LKERGIPHNVLNAK--NHE 441 (745)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH---------------------------HHHcCCCeEEeeCC--hHH
Confidence 44444444 33466666666655555555444 34568888999999 889
Q ss_pred HHHHhhhccCCCCCeeEEEEcCcccccccc-C--c-----eEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC
Q psy12699 1079 KLAQASKFNDPDNPCKVMVATDAIGMGLNL-S--I-----RRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1079 R~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~--v-----~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
|+..+..|+ .+...|+||||+++||+|| . | -+||+++. |-|...|.||+|||||.|
T Consensus 442 rEa~ii~~a--g~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~--------------p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 442 REAEIIAQA--GRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER--------------HESRRIDNQLRGRSGRQG 505 (745)
T ss_pred HHHHHHHhc--CCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC--------------CCcHHHHHHHhccccCCC
Confidence 999999999 8999999999999999999 6 4 49999998 889999999999999999
Q ss_pred CccccccCCCCc
Q psy12699 1151 THFEKLAGSHPA 1162 (1269)
Q Consensus 1151 ~~g~~~~~~~p~ 1162 (1269)
..|.+..+...+
T Consensus 506 ~~G~s~~~ls~e 517 (745)
T TIGR00963 506 DPGSSRFFLSLE 517 (745)
T ss_pred CCcceEEEEecc
Confidence 999985555554
No 98
>KOG1581|consensus
Probab=99.84 E-value=2.8e-19 Score=190.69 Aligned_cols=261 Identities=15% Similarity=0.123 Sum_probs=225.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHH
Q psy12699 91 FPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMI 170 (1269)
Q Consensus 91 f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~l 170 (1269)
|..+.|+.+.|-+.+.++.+.+....... ......++++...++...++..+++.||+|+|.++.++.|++..+.|++
T Consensus 48 F~~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 48 FEHSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 77888999999999999886655443322 3345567778888889999999999999999999999999999999999
Q ss_pred HHHHHhcccCCcceehhhHHHhhhceeeeecCC---------ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHH
Q psy12699 171 AEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL---------GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYG 241 (1269)
Q Consensus 171 ls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~---------~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~ 241 (1269)
+..++.++|+++.+++..+++.+||.++...+. .+.+.|++++..+.++.++.+..|.+++ +.++.+++.
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf-~~~k~s~~~ 204 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF-KKYKVSSLH 204 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh-ccCCccHhH
Confidence 999999999999999999999999998877422 2458999999999999999999999988 567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHH
Q psy12699 242 LMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTY 321 (1269)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~l 321 (1269)
++++.++++++......+..+.+.+..++.. ..+..+.-+++.++++.+.+++.|+.+++.||++.+++.+.+.+++++
T Consensus 205 mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~ 283 (327)
T KOG1581|consen 205 MMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM 283 (327)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999888666666655555433 234455678888899999999999999999999999999999999999
Q ss_pred HHhhccCcccccccceeehhhhhhhhhhhhhhccC
Q psy12699 322 LGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFK 356 (1269)
Q Consensus 322 ls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~ 356 (1269)
++.++||++. +..+|+|..+++.|+++-.+.+.+
T Consensus 284 lS~i~f~h~~-s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 284 LSCIVFGHPL-SSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHhCCcc-chhhccCeeeehHHHHHHHHHHHh
Confidence 9999999955 999999999999999988877766
No 99
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.84 E-value=7.4e-20 Score=224.35 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=73.0
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccC----------ceEEEEcCCCCCCcccCCcc
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS----------IRRVIFYSLIKPSLNEKGER 1129 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~----------v~~VI~~~~~k~~~~~~G~~ 1129 (1269)
|...|+++.++||.+.+++|..+.++++ +| +|+||||+++||+||+ +.+|++++.
T Consensus 444 L~~~gi~~~~L~a~~~~~E~~ii~~ag~--~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~----------- 508 (762)
T TIGR03714 444 LLREGIPHNLLNAQNAAKEAQIIAEAGQ--KG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERM----------- 508 (762)
T ss_pred HHHCCCCEEEecCCChHHHHHHHHHcCC--CC--eEEEEccccccccCCCCCccccccCCeEEEEecCC-----------
Confidence 3467899999999999999998888887 55 7999999999999994 678888887
Q ss_pred ccccCCHhHHHHHhcccCCCCCccccccCCCCccccc
Q psy12699 1130 EIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEK 1166 (1269)
Q Consensus 1130 ~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~ 1166 (1269)
|....+ .||+|||||.|.+|.++.+..++.+-.
T Consensus 509 ---ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 509 ---ENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred ---CCcHHH-HHhhhcccCCCCceeEEEEEccchhhh
Confidence 444455 999999999999999977777664433
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=8.2e-20 Score=224.11 Aligned_cols=275 Identities=14% Similarity=0.106 Sum_probs=161.2
Q ss_pred CceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCCCCCCCEEEEc
Q psy12699 825 PLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGEEKPANHVACT 899 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~~~~~~Ivv~T 899 (1269)
++.++++|||+|||++++.++.. .+++||++|+++|+.|+.+++.++. ..+...+|+.+.. .....+|+|+|
T Consensus 274 r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~---~~~~~~VvVtT 350 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER---FHGEAGVVVST 350 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc---cccCCcEEEEE
Confidence 47899999999999999766554 6789999999999999999998753 2455566653321 11247899999
Q ss_pred ccccc--------------CC--CCeeEEEEecccccccCCchhHHHHHHhccCcc-eEEEEeecCChH-HHHHHHHHcC
Q psy12699 900 VEMTS--------------VN--IPYEVAVIDEIQMMRDITRGWAWTRALLGLMAK-EIHVCGEAGAVD-LVKAIMMTTN 961 (1269)
Q Consensus 900 ~e~~~--------------~l--~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~-~~~l~~s~~~~~-~~~~l~~~~~ 961 (1269)
++++. .+ ..++++|+||||++.. ..+..++..+.+. .+-+.+++...+ ....+....|
T Consensus 351 Yq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiG 426 (732)
T TIGR00603 351 YSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIG 426 (732)
T ss_pred HHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcC
Confidence 87552 12 3689999999999943 3566666555443 333334332111 1222332333
Q ss_pred CceEEEec------ccCCccccccccc--------cccCC-cCCCCEEEEecHHhHHH---HHHHHHhcCCceEEEeCCC
Q psy12699 962 EDVEVYKY------KRLTELQIEDSAV--------GSLDN-IQPGDCIVCFSKNDVYT---VSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 962 ~~~~v~~~------~r~~~l~~~~~~~--------~~l~~-~~~g~~iv~~s~~~~~~---l~~~L~~~~~~~~~i~g~l 1023 (1269)
+.+.-... ....+..+..... ..+.. ......+...+...... +.+.-+..+.++.++....
T Consensus 427 P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~ 506 (732)
T TIGR00603 427 PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNV 506 (732)
T ss_pred CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCH
Confidence 32211000 0001100000000 00000 00001111111111111 1111111223332222221
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCC-CeeEEEEcCcc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDN-PCKVMVATDAI 1102 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g-~~~VLVaTdv~ 1102 (1269)
....... +. +.+.++||++++++|+++++.|+ +| .+++||+|+++
T Consensus 507 ~~l~~~a----------------------------~~----L~~~~I~G~ts~~ER~~il~~Fr--~~~~i~vLv~SkVg 552 (732)
T TIGR00603 507 FALKEYA----------------------------IK----LGKPFIYGPTSQQERMQILQNFQ--HNPKVNTIFLSKVG 552 (732)
T ss_pred HHHHHHH----------------------------HH----cCCceEECCCCHHHHHHHHHHHH--hCCCccEEEEeccc
Confidence 1111111 11 12456899999999999999998 54 88999999999
Q ss_pred cccccc-CceEEEEcCCCCCCcccCCcccccc-CCHhHHHHHhcccCCCCCccc
Q psy12699 1103 GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDL-ISVSAALQIAGRAGRFNTHFE 1154 (1269)
Q Consensus 1103 ~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p-~s~~~y~QR~GRaGR~G~~g~ 1154 (1269)
.+|||+ ++++||+++. | -|..+|+||+||++|.+++|.
T Consensus 553 deGIDlP~a~vvI~~s~--------------~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 553 DTSIDLPEANVLIQISS--------------HYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred ccccCCCCCCEEEEeCC--------------CCCCHHHHHHHhcccccCCCCCc
Confidence 999999 9999999986 3 479999999999999987765
No 101
>PRK13766 Hef nuclease; Provisional
Probab=99.83 E-value=5.8e-20 Score=238.37 Aligned_cols=68 Identities=26% Similarity=0.373 Sum_probs=62.7
Q ss_pred cCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCC
Q psy12699 1071 YGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRF 1149 (1269)
Q Consensus 1071 Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~ 1149 (1269)
|++|++.+|.+++++|+ +|+.+|||||+++++|+|+ ++++||+||+ |.+...|+||+||+||.
T Consensus 404 ~~~~~~~~r~~~~~~F~--~g~~~vLvaT~~~~eGldi~~~~~VI~yd~--------------~~s~~r~iQR~GR~gR~ 467 (773)
T PRK13766 404 DKGMSQKEQIEILDKFR--AGEFNVLVSTSVAEEGLDIPSVDLVIFYEP--------------VPSEIRSIQRKGRTGRQ 467 (773)
T ss_pred cCCCCHHHHHHHHHHHH--cCCCCEEEECChhhcCCCcccCCEEEEeCC--------------CCCHHHHHHHhcccCcC
Confidence 56799999999999999 8999999999999999999 9999999998 67899999999999998
Q ss_pred CCcccc
Q psy12699 1150 NTHFEK 1155 (1269)
Q Consensus 1150 G~~g~~ 1155 (1269)
|+ |.+
T Consensus 468 ~~-~~v 472 (773)
T PRK13766 468 EE-GRV 472 (773)
T ss_pred CC-CEE
Confidence 76 555
No 102
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.83 E-value=1.1e-18 Score=200.66 Aligned_cols=278 Identities=11% Similarity=0.121 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHH-HH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIY-LG 140 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 140 (1269)
...++.+++|+..+. ..|..+.+ ++ |..+.++|++++.+.+....+. ++.+ ++.++..+++. ..
T Consensus 7 l~~l~~~~~Wg~~~~----~~k~~~~~--~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~---~~~~~~~g~~~~~~ 71 (299)
T PRK11453 7 VLALLVVVVWGLNFV----VIKVGLHN--MP-PLMLAGLRFMLVAFPAIFFVAR-----PKVP---LNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHhhhHH----HHHHHHhc--CC-HHHHHHHHHHHHHHHHHHHhcC-----CCCc---hHHHHHHHHHHHHH
Confidence 445666777777776 55877754 66 5567788877655444332211 1111 22344445443 34
Q ss_pred Hhhhccccccc-cchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC---CccchHHHHHHHHH
Q psy12699 141 NMVFGLGGTKE-LSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND---LGYNFQGYVFVLLN 216 (1269)
Q Consensus 141 ~~~~~~~sL~~-is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G~ll~l~s 216 (1269)
...+.+.+++| +|++.+.++.++.|+++.+++++++|||++++++++++++++|+.++..++ .+.+..|.++++++
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~a 151 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAA 151 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHH
Confidence 44566778887 688999999999999999999999999999999999999999998887542 22345799999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-
Q psy12699 217 NFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS- 295 (1269)
Q Consensus 217 ~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~- 295 (1269)
+++++++.+++|+..++..........++++.++.+...+.....+............+...|..+++.++++..+.+.
T Consensus 152 al~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l 231 (299)
T PRK11453 152 AFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGI 231 (299)
T ss_pred HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999543222223344455555555444443333333221111111123445677788888888888777
Q ss_pred HHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 296 IMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 296 ~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
.++.+++.++.+.+++..++|++++++|++++||.+ +..+++|++++++|+++..+.++
T Consensus 232 ~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~-~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 232 WGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERL-TGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHHHHHhcchh
Confidence 557899999999999999999999999999999965 99999999999999998776654
No 103
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.82 E-value=1.2e-18 Score=197.43 Aligned_cols=274 Identities=13% Similarity=0.108 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH--HhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccch
Q psy12699 77 FITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVG--KKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSL 154 (1269)
Q Consensus 77 ~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~ 154 (1269)
+....+..+-+. |++.|.+-++..++.-.++.... .+.+..+....-+..+++.+.++++...+.++.+.|++|+++
T Consensus 27 ~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv 105 (334)
T PF06027_consen 27 GTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV 105 (334)
T ss_pred hHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 334455655555 88877666666555444433221 121211222223456778888899999999999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC---------ccchHHHHHHHHHHHHHHHHHH
Q psy12699 155 PMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL---------GYNFQGYVFVLLNNFLTAVNGV 225 (1269)
Q Consensus 155 s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~---------~~~~~G~ll~l~s~~~~a~~~v 225 (1269)
+.++++.+++.+|+++++++++++|+++.+++|++++++|++++...|. +....|.+++++|+++||++++
T Consensus 106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV 185 (334)
T PF06027_consen 106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV 185 (334)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877652 2347999999999999999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q psy12699 226 YTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSA 305 (1269)
Q Consensus 226 ~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~ 305 (1269)
++++.++ +.+..+...+..+++++++.+...+.| ........+ +...+.+++..+++-+......-..++..||
T Consensus 186 ~~E~~v~---~~~~~~~lg~~Glfg~ii~~iq~~ile-~~~i~~~~w--~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssA 259 (334)
T PF06027_consen 186 LEEKLVK---KAPRVEFLGMLGLFGFIISGIQLAILE-RSGIESIHW--TSQVIGLLVGYALCLFLFYSLVPIVLRMSSA 259 (334)
T ss_pred HHHHhcc---cCCHHHHHHHHHHHHHHHHHHHHHhee-hhhhhccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999773 357788888899999999888776664 333333332 3333333333344334333334567999999
Q ss_pred cchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCCC
Q psy12699 306 LTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKPA 358 (1269)
Q Consensus 306 ~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~~ 358 (1269)
+.+.+.-....++++++++++||+.. ++..++|.+++++|.++|+..+.+..
T Consensus 260 t~~nLsLLTsd~~ali~~i~~f~~~~-~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 260 TFFNLSLLTSDFYALIIDIFFFGYKF-SWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred ceeehHHHHhhHHHHHHHHHhcCccc-cHHHHHHHHHHHHHhheEEccCCccc
Confidence 99999888999999999999999965 99999999999999999997765543
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1e-19 Score=220.81 Aligned_cols=323 Identities=15% Similarity=0.152 Sum_probs=167.2
Q ss_pred EeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc-cCCCceeeecceeeeccC------CCCCCCEEE
Q psy12699 829 HAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND-RGTPCDLITGEEKKFIQG------EEKPANHVA 897 (1269)
Q Consensus 829 v~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~-~g~~v~~~~G~~~~~~~~------~~~~~~Ivv 897 (1269)
+.+|||||||.+++.. +.++++++|++|+++|+.|+++++++ ++.++.+++|+....+.. ..+..+|+|
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVV 81 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVI 81 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEE
Confidence 4567777777666332 23478999999999999999999975 677888888765432211 223679999
Q ss_pred Ecccc-ccCCCCeeEEEEecccccccCC-chhHH--HH-H-HhccCcceEEEEeecCChHHHHHHHHHcCCceEE-Eecc
Q psy12699 898 CTVEM-TSVNIPYEVAVIDEIQMMRDIT-RGWAW--TR-A-LLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEV-YKYK 970 (1269)
Q Consensus 898 ~T~e~-~~~l~~~~~lViDEah~~~d~~-rg~~~--~~-~-ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v-~~~~ 970 (1269)
+|+.. ...+.+++++||||+|.....+ .+..+ .+ + +.........+++++++. .+.+.......... .-.+
T Consensus 82 GTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs--les~~~~~~g~~~~~~l~~ 159 (505)
T TIGR00595 82 GTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS--LESYHNAKQKAYRLLVLTR 159 (505)
T ss_pred CChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC--HHHHHHHhcCCeEEeechh
Confidence 99873 3348899999999999985322 12211 11 1 111112233445566655 23332221111221 1111
Q ss_pred cC-----Cccccc------------ccccccc-CCcCCC-CEEEEecHHh------HHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 971 RL-----TELQIE------------DSAVGSL-DNIQPG-DCIVCFSKND------VYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 971 r~-----~~l~~~------------~~~~~~l-~~~~~g-~~iv~~s~~~------~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
|. ...... ....+.+ +.++.| ++++|.+++. |......++...-.+...|..-..
T Consensus 160 r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~ 239 (505)
T TIGR00595 160 RVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEG 239 (505)
T ss_pred hhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCC
Confidence 10 000000 0001111 112333 5666653321 111111111000000011100000
Q ss_pred hhHHHHhcccCC-CCCCccchhhhhhhccCcccc----cccc--CCceeEEEcCCCCHHhH--HHHhhhccCCCCCeeEE
Q psy12699 1026 TTKLAQASKFND-PDNPCKVMVATDAIGMGLNFR----GIES--RGTEVAVIYGSLPPTTK--LAQASKFNDPDNPCKVM 1096 (1269)
Q Consensus 1026 ~~r~~~~~~f~~-~~~~~~~l~~t~~~~~~~~~~----~l~~--~gi~v~~~Hg~l~~~eR--~~v~~~F~~~~g~~~VL 1096 (1269)
.-+-... .+.. ....|+.--..+....|.-.. .+.+ .+.++..+|++++..++ +++++.|+ +|+.+||
T Consensus 240 ~l~Ch~C-g~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~--~g~~~IL 316 (505)
T TIGR00595 240 KLRCHYC-GYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFA--NGKADIL 316 (505)
T ss_pred eEEcCCC-cCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHh--cCCCCEE
Confidence 0000000 0000 011111111000011110000 1111 14678999999998877 89999999 9999999
Q ss_pred EEcCcccccccc-CceEEEEcCCCC----CCcccCCccccccCCHhHHHHHhcccCCCCCccccc-cCCCCc
Q psy12699 1097 VATDAIGMGLNL-SIRRVIFYSLIK----PSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKL-AGSHPA 1162 (1269)
Q Consensus 1097 VaTdv~~~GIDi-~v~~VI~~~~~k----~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~-~~~~p~ 1162 (1269)
|+|+++++|+|+ +|+.|+..+... +||+.. -...+.|.|++||+||.+++|.++ ....|+
T Consensus 317 VgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~------E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 317 IGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAA------ERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred EeCcccccCCCCCcccEEEEEcCcccccCcccchH------HHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999 999986544421 112110 124678999999999999999984 333443
No 105
>KOG1441|consensus
Probab=99.82 E-value=7.2e-21 Score=212.36 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=142.2
Q ss_pred hHHHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCC-ChhhhhhhchhhHHHHHH
Q psy12699 591 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNY-HRNIFFELMPLPFIYLGN 669 (1269)
Q Consensus 591 ~~~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~p~~~~~~~~ 669 (1269)
.......+|.++|++.+++||++|+.|+||+|++++++|++++++...+++.+|..+.++. +...++.++|++++|+++
T Consensus 17 ~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~ 96 (316)
T KOG1441|consen 17 RIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCIS 96 (316)
T ss_pred HHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHH
Confidence 3445577788999999999999999999999999999999999999999999999998876 448999999999999999
Q ss_pred HhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCcceehhhhHhhcC
Q psy12699 670 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPVDLHVVLSDIIQG 744 (1269)
Q Consensus 670 i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f~~~~~l~~i~~~ 744 (1269)
++++|.||++++|||||++|+++|+++++++++++++++++.+++++++ +.|+++++++|++||+++.+.++...
T Consensus 97 ~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~ 172 (316)
T KOG1441|consen 97 HVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISN 172 (316)
T ss_pred HHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 69999999999999997666655443
No 106
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.82 E-value=6.9e-20 Score=239.55 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=147.8
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCC----Cc---eeeecceeeeccC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGT----PC---DLITGEEKKFIQG 888 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~----~v---~~~~G~~~~~~~~ 888 (1269)
.++.|+|++++||||||||..++.. ..++++++|++|||+||.|+++++++++. .+ +.++|+....++.
T Consensus 89 ~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~ 168 (1171)
T TIGR01054 89 RVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKK 168 (1171)
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHH
Confidence 3588999999999999999754221 12378999999999999999999876543 22 2356765433221
Q ss_pred ------CCCCCCEEEEcccccc----CCC-CeeEEEEecccccccCC-----------chh-HHHHHH------------
Q psy12699 889 ------EEKPANHVACTVEMTS----VNI-PYEVAVIDEIQMMRDIT-----------RGW-AWTRAL------------ 933 (1269)
Q Consensus 889 ------~~~~~~Ivv~T~e~~~----~l~-~~~~lViDEah~~~d~~-----------rg~-~~~~~l------------ 933 (1269)
.+.+++|+|+||+.+. .+. +++++|+||||++++.+ +.. ..+.++
T Consensus 169 ~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~ 248 (1171)
T TIGR01054 169 EFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRA 248 (1171)
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchH
Confidence 1235899999988443 133 89999999999998743 322 122221
Q ss_pred ----------hccCcc--eEEEEeecCC-hHHHH-HHHHHcCCceEEEecc---cCCcccc------ccccccccCCcCC
Q psy12699 934 ----------LGLMAK--EIHVCGEAGA-VDLVK-AIMMTTNEDVEVYKYK---RLTELQI------EDSAVGSLDNIQP 990 (1269)
Q Consensus 934 ----------l~l~~~--~~~l~~s~~~-~~~~~-~l~~~~~~~~~v~~~~---r~~~l~~------~~~~~~~l~~~~~ 990 (1269)
..++.+ .+++++++|. ....+ .++... -.+.+.... +.....+ .......+....
T Consensus 249 ~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l-l~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~- 326 (1171)
T TIGR01054 249 LHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL-LGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLG- 326 (1171)
T ss_pred HHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc-cceEecCccccccceEEEEEecccHHHHHHHHHHHcC-
Confidence 112222 2245566662 22222 222110 011111100 0000000 000111122222
Q ss_pred CCEEEEe-cH---HhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCce
Q psy12699 991 GDCIVCF-SK---NDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTE 1066 (1269)
Q Consensus 991 g~~iv~~-s~---~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~ 1066 (1269)
+..+||+ ++ +.++++++.|++.|. +
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~---------------------------------------------------~ 355 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGV---------------------------------------------------K 355 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCc---------------------------------------------------e
Confidence 2344444 44 666666666655444 4
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEE----cCcccccccc-C-ceEEEEcCCCCCC
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA----TDAIGMGLNL-S-IRRVIFYSLIKPS 1122 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVa----Tdv~~~GIDi-~-v~~VI~~~~~k~~ 1122 (1269)
+..+||++++ .++++|+ +|+++|||| ||+++||||+ + |++|||||++++.
T Consensus 356 a~~lhg~~~~----~~l~~Fr--~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 356 AVAYHATKPK----EDYEKFA--EGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred EEEEeCCCCH----HHHHHHH--cCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 6777888762 5679999 999999999 5999999999 8 8999999998865
No 107
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.81 E-value=2.3e-19 Score=225.48 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=172.2
Q ss_pred CCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc-cCCCceeeecceeeeccC------CCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND-RGTPCDLITGEEKKFIQG------EEKP 892 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~-~g~~v~~~~G~~~~~~~~------~~~~ 892 (1269)
++++++.+|||||||.+++.. +..++++++++||++|+.|+++++++ +|.++..++|+....++. ....
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE 241 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 467888888888888877433 23478999999999999999999976 688888888875443221 2236
Q ss_pred CCEEEEccccc-cCCCCeeEEEEecccccccCC-chhHH--HH-HH-hccCcceEEEEeecCChHHHHHHHHHcCCceE-
Q psy12699 893 ANHVACTVEMT-SVNIPYEVAVIDEIQMMRDIT-RGWAW--TR-AL-LGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVE- 965 (1269)
Q Consensus 893 ~~Ivv~T~e~~-~~l~~~~~lViDEah~~~d~~-rg~~~--~~-~l-l~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~- 965 (1269)
.+|+|+|+..+ ..+.+++++|+||+|..+..+ .+..+ .+ +. .........+++++++.. +.+.......+.
T Consensus 242 ~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~--~s~~~~~~g~~~~ 319 (679)
T PRK05580 242 AKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSL--ESLANAQQGRYRL 319 (679)
T ss_pred CCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCH--HHHHHHhccceeE
Confidence 79999998743 458899999999999875322 12111 11 11 122223345556666652 222211111111
Q ss_pred EEecccC----Cc-ccccc---------------cccccc-CCcCCC-CEEEEecHHh------HHHHHHHHHhcCCceE
Q psy12699 966 VYKYKRL----TE-LQIED---------------SAVGSL-DNIQPG-DCIVCFSKND------VYTVSRGIESRGTEVA 1017 (1269)
Q Consensus 966 v~~~~r~----~~-l~~~~---------------~~~~~l-~~~~~g-~~iv~~s~~~------~~~l~~~L~~~~~~~~ 1017 (1269)
+.-.+|. .| ....+ .....+ +.+..| +++++..++. |......++. ..|.
T Consensus 320 ~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C--~~C~ 397 (679)
T PRK05580 320 LRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAEC--PHCD 397 (679)
T ss_pred EEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCC--CCCC
Confidence 1111111 00 00000 000011 112333 5666553321 1111111100 0111
Q ss_pred --EEeCCCChhhHHHHhcccCCC----CCCccchhhhhhhccCcccc----cccc--CCceeEEEcCCCCH--HhHHHHh
Q psy12699 1018 --VIYGSLPPTTKLAQASKFNDP----DNPCKVMVATDAIGMGLNFR----GIES--RGTEVAVIYGSLPP--TTKLAQA 1083 (1269)
Q Consensus 1018 --~i~g~l~~~~r~~~~~~f~~~----~~~~~~l~~t~~~~~~~~~~----~l~~--~gi~v~~~Hg~l~~--~eR~~v~ 1083 (1269)
..|...... -...++.. ...|+.--.......|.-.. .+.. .+.++...|+++.+ +++++++
T Consensus 398 ~~l~~h~~~~~----l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l 473 (679)
T PRK05580 398 ASLTLHRFQRR----LRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLL 473 (679)
T ss_pred CceeEECCCCe----EECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHH
Confidence 011000000 00000000 11111110000001111111 1111 25678999999975 5789999
Q ss_pred hhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCC----CcccCCccccccCCHhHHHHHhcccCCCCCccccc
Q psy12699 1084 SKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKP----SLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKL 1156 (1269)
Q Consensus 1084 ~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~----~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~ 1156 (1269)
+.|+ +|+.+|||+|+++++|+|+ +|+.|+..+.... ||+. + -...+.|+|++||+||.+++|.++
T Consensus 474 ~~f~--~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra-~-----Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 474 AQFA--RGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRA-S-----ERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred HHHh--cCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccch-H-----HHHHHHHHHHHhhccCCCCCCEEE
Confidence 9999 9999999999999999999 9999976654221 1211 1 123688999999999999999994
No 108
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.81 E-value=2.9e-18 Score=196.33 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHH-HHHh
Q psy12699 64 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIY-LGNM 142 (1269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 142 (1269)
.+...++|+..++ ..|...+ +++ |..+++.|++++.+++......++.+ ..+++.++.....|++. ....
T Consensus 13 ~~~~~~iWg~~~~----~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 13 LFALYIIWGSTYL----VIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHhhHHH----HHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 4445555665555 6788776 456 45577888887776665443333222 22455566666667653 5566
Q ss_pred hhccccc-cccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeec-CCccchHHHHHHHHHHHHH
Q psy12699 143 VFGLGGT-KELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALN-DLGYNFQGYVFVLLNNFLT 220 (1269)
Q Consensus 143 ~~~~~sL-~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~-~~~~~~~G~ll~l~s~~~~ 220 (1269)
.+.+.+. ++++++.++++.++.|+++.+++.+ +|||++++++++++++++|+.++..+ +.+.+..|.++++++++++
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~ 162 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASW 162 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHH
Confidence 7778888 9999999999999999999999985 69999999999999999999887643 3345568999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-HHHh
Q psy12699 221 AVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS-IMLC 299 (1269)
Q Consensus 221 a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~-~~~~ 299 (1269)
|++.++.|+.- + .++.....++..++.+.+.++....+.... ...+...|..+++.++++..+.+. .+++
T Consensus 163 a~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~i~~s~~~~~l~~~~ 233 (292)
T PRK11272 163 AFGSVWSSRLP-L---PVGMMAGAAEMLAAGVVLLIASLLSGERLT-----ALPTLSGFLALGYLAVFGSIIAISAYMYL 233 (292)
T ss_pred HHHHHHHHhcC-C---CcchHHHHHHHHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999832 2 234556677777777777776554432110 112334456677777777666665 6689
Q ss_pred hhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 300 TQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 300 i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
+++.++...+++..++|++++++|++++||.+ +..+++|+++++.|+++.++.+.
T Consensus 234 ~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~-t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 234 LRNVRPALATSYAYVNPVVAVLLGTGLGGETL-SPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999965 99999999999999999877554
No 109
>KOG1580|consensus
Probab=99.81 E-value=1e-19 Score=184.89 Aligned_cols=257 Identities=11% Similarity=0.075 Sum_probs=216.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHH
Q psy12699 91 FPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMI 170 (1269)
Q Consensus 91 f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~l 170 (1269)
|.+...++++|+.+..+..-++...+. ....+....+....+++.+.+.+..+|.+++|+|.++..+-|++.|+.+++
T Consensus 50 FTfalaLVf~qC~~N~vfAkvl~~ir~--~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 50 FTFALALVFFQCTANTVFAKVLFLIRK--KTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred ehHHHHHHHHHHHHHHHHHHhheeecc--cccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 777888999999999887755443332 122344445667778888999999999999999999999999999999999
Q ss_pred HHHHHhcccCCcceehhhHHHhhhceeeeecCC-------ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHH
Q psy12699 171 AEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL-------GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLM 243 (1269)
Q Consensus 171 ls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~-------~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~ 243 (1269)
+++++.+++++|+++..++++++||+++.+.+. .....|-++.++|....++....|.+ ++..++.+.-.++
T Consensus 128 lGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdr-ira~yq~~g~~MM 206 (337)
T KOG1580|consen 128 LGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDR-IRASYQRTGTSMM 206 (337)
T ss_pred eehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHH-HHHhhccCchhhH
Confidence 999999999999999999999999999877532 22357999999999999999999998 5456677889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHH
Q psy12699 244 FYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLG 323 (1269)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls 323 (1269)
+|+++++.+.+..-.+++|+..+...+...+ +..|.-+.+.++.+.+.+++.|..+...||++.|++.+.++.++++.|
T Consensus 207 ~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh-P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~S 285 (337)
T KOG1580|consen 207 FYTNLWSTLYLGAGLLFTGELWEFFYFVQRH-PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILIS 285 (337)
T ss_pred HHHHHHHHHHhhhhheehhhHHHHHHHHHhc-cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHH
Confidence 9999999999988888888765555444332 334456777788888999999999999999999999999999999999
Q ss_pred hhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 324 MFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 324 ~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
+++|++ +++..||+|.++++.|...-..
T Consensus 286 Vllf~n-pls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 286 VLLFNN-PLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHhcC-cCcHHHHHHHHHHHHHhhhHhh
Confidence 999999 5699999999999999876543
No 110
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.81 E-value=2.3e-18 Score=197.43 Aligned_cols=268 Identities=13% Similarity=0.057 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGN 141 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (1269)
+..++++++|+..+. ..|..+.. +| |..+.+.|+..+.+++..... . ++.++...+.++..++.+++.
T Consensus 7 l~~l~a~~~Wg~~~~----~~k~~~~~--~~-P~~~~~~R~~~a~l~l~~~~~--~---~~~~~~~~~~~~~~~l~~~~~ 74 (295)
T PRK11689 7 LIGLIAILLWSTMVG----LIRGVSES--LG-PVGGAAMIYSVSGLLLLLTVG--F---PRLRQFPKRYLLAGGLLFVSY 74 (295)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHcc--CC-hHHHHHHHHHHHHHHHHHHcc--c---cccccccHHHHHHHhHHHHHH
Confidence 455566677776665 67887765 55 555777888887776654321 1 111222222333334445566
Q ss_pred hhhccccccc----cchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCc-----------cc
Q psy12699 142 MVFGLGGTKE----LSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLG-----------YN 206 (1269)
Q Consensus 142 ~~~~~~sL~~----is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~-----------~~ 206 (1269)
..+.+.+++| .+++.+.++.++.|+++.+++++++|||++++++++++++++|++++..++.+ ..
T Consensus 75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 154 (295)
T PRK11689 75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASN 154 (295)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccC
Confidence 6666666654 57778889999999999999999999999999999999999999888755321 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSC 286 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 286 (1269)
..|.+++++|++++|+|.++.|+.. + +.++....+ ..+.+.+.+.....+.. . ...+...|..+++.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~--~~~~~~~~~---~~~~~~l~~~~~~~~~~----~--~~~~~~~~~~l~~~~ 222 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-R--GKNGITLFF---ILTALALWIKYFLSPQP----A--MVFSLPAIIKLLLAA 222 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-C--CCCchhHHH---HHHHHHHHHHHHHhcCc----c--ccCCHHHHHHHHHHH
Confidence 5699999999999999999999943 2 345554422 22223333322222211 1 112334455566666
Q ss_pred HHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 287 CMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
+.+.+..++.++++++.+|...+++.+++|++++++|++++||.+ +..+++|+++++.|+++..+..
T Consensus 223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~-~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPL-SFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhHHHHhhhH
Confidence 654444555788999999999999999999999999999999965 9999999999999998876554
No 111
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.81 E-value=5.2e-18 Score=194.25 Aligned_cols=271 Identities=14% Similarity=0.028 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGN 141 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (1269)
.+++..+++-.++..+...+.|+++.. +++. .+.++|++++.+++.+..+.++ .+.+++.++..+..|++..+.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~-~~~~~R~~~a~l~l~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL--VGAP-GVTALRLALGTLILIAIFKPWR---LRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH--cCHH-HHHHHHHHHHHHHHHHHHhHHh---ccCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555666689999875 5644 4777888887766655433222 123456666677778877888
Q ss_pred hhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC---CccchHHHHHHHHHHH
Q psy12699 142 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND---LGYNFQGYVFVLLNNF 218 (1269)
Q Consensus 142 ~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G~ll~l~s~~ 218 (1269)
..+.+++++|+|++.++++.++.|+++++++. |++.. +.++.++++|+.++...+ .+.+..|.++++++++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~ 158 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGA 158 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHH
Confidence 88899999999999999999999999998873 55543 456778899988765322 2345679999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-HH
Q psy12699 219 LTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS-IM 297 (1269)
Q Consensus 219 ~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~-~~ 297 (1269)
++|+|.++.|+.. + +.++..+ .+...++.+.++++....+. ....+...|..+++.|+++..+.+. .+
T Consensus 159 ~~a~~~v~~r~~~-~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 159 CWAIYILSGQRAG-A--EHGPATV-AIGSLIAALIFVPIGALQAG-------EALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHh-c--cCCchHH-HHHHHHHHHHHHHHHHHccC-------cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999954 2 3455555 45556666666666554321 0112333444566778887777775 67
Q ss_pred HhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccC
Q psy12699 298 LCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFK 356 (1269)
Q Consensus 298 ~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~ 356 (1269)
+++++.+|..++++.+++|++++++|+++|||.+ +..+++|+++++.|++.+.+..++
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~-~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETL-TLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999965 999999999999999999866544
No 112
>KOG0353|consensus
Probab=99.81 E-value=2.5e-19 Score=193.00 Aligned_cols=274 Identities=21% Similarity=0.249 Sum_probs=190.0
Q ss_pred hhcccccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC-------
Q psy12699 817 AESGVYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------- 888 (1269)
Q Consensus 817 ~~~~l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------- 888 (1269)
+....+.|++.++..|||.||++|| +.++...+-+++++|...|.....-.++++|+...++....+..+..
T Consensus 102 ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~ 181 (695)
T KOG0353|consen 102 AINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAIT 181 (695)
T ss_pred HhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHc
Confidence 4456789999999999999999999 88888899999999999999999999999998766655443322111
Q ss_pred -CCCCCCEEEEccccccC-------------CCCeeEEEEecccccccCCchhHHHH------HH-hccCcceE-EEEee
Q psy12699 889 -EEKPANHVACTVEMTSV-------------NIPYEVAVIDEIQMMRDITRGWAWTR------AL-LGLMAKEI-HVCGE 946 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~~-------------l~~~~~lViDEah~~~d~~rg~~~~~------~l-l~l~~~~~-~l~~s 946 (1269)
.+...++++.|||.+.. ...+.++-|||+|+-+ ++|.++.. ++ ..++...+ -+.++
T Consensus 182 nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccs--qwghdfr~dy~~l~ilkrqf~~~~iigltat 259 (695)
T KOG0353|consen 182 NKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCS--QWGHDFRPDYKALGILKRQFKGAPIIGLTAT 259 (695)
T ss_pred CCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehh--hhCcccCcchHHHHHHHHhCCCCceeeeehh
Confidence 23357899999995541 5689999999999985 34444321 11 11222222 23333
Q ss_pred cCCh--HHHHHHHHHcCCceEEE-ecccCCccccc--------c----ccccccCCc--CCCCEEEEecHHhHHHHHHHH
Q psy12699 947 AGAV--DLVKAIMMTTNEDVEVY-KYKRLTELQIE--------D----SAVGSLDNI--QPGDCIVCFSKNDVYTVSRGI 1009 (1269)
Q Consensus 947 ~~~~--~~~~~l~~~~~~~~~v~-~~~r~~~l~~~--------~----~~~~~l~~~--~~g~~iv~~s~~~~~~l~~~L 1009 (1269)
++.. +..+++..... .+.++ ...|+ .+.|. + .....+..- ....+|.|++++++++++..|
T Consensus 260 atn~vl~d~k~il~ie~-~~tf~a~fnr~-nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al 337 (695)
T KOG0353|consen 260 ATNHVLDDAKDILCIEA-AFTFRAGFNRP-NLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL 337 (695)
T ss_pred hhcchhhHHHHHHhHHh-hheeecccCCC-CceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH
Confidence 3222 22333321110 01111 11121 11111 1 111112111 222577788999999999998
Q ss_pred HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCC
Q psy12699 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDP 1089 (1269)
Q Consensus 1010 ~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~ 1089 (1269)
+..|.. ...||+.|.+++|.-+.+.+.
T Consensus 338 kn~gi~---------------------------------------------------a~~yha~lep~dks~~hq~w~-- 364 (695)
T KOG0353|consen 338 KNHGIH---------------------------------------------------AGAYHANLEPEDKSGAHQGWI-- 364 (695)
T ss_pred HhcCcc---------------------------------------------------ccccccccCcccccccccccc--
Confidence 876654 566788888888888888899
Q ss_pred CCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH---------------------------
Q psy12699 1090 DNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ--------------------------- 1141 (1269)
Q Consensus 1090 ~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q--------------------------- 1141 (1269)
.|++.|+|||-..++|||- +|++||+..+ |.|.++|+|
T Consensus 365 a~eiqvivatvafgmgidkpdvrfvihhsl--------------~ksienyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 365 AGEIQVIVATVAFGMGIDKPDVRFVIHHSL--------------PKSIENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred ccceEEEEEEeeecccCCCCCeeEEEeccc--------------chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 9999999999999999999 9999999998 778999999
Q ss_pred ----------------HhcccCCCCCccccccCCCC
Q psy12699 1142 ----------------IAGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1142 ----------------R~GRaGR~G~~g~~~~~~~p 1161 (1269)
..|||||++.+..|++++.-
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 88999999999999777543
No 113
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.80 E-value=1.6e-18 Score=195.58 Aligned_cols=251 Identities=16% Similarity=0.131 Sum_probs=195.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHH-HHHHHhhhccccccccchhHHH
Q psy12699 80 IVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPF-IYLGNMVFGLGGTKELSLPMFT 158 (1269)
Q Consensus 80 ~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~sL~~is~s~~~ 158 (1269)
+..|+.++. ..| +..+.++|++++.+++....+.+ + +++.++..+..+. ..++...+.+.|++|++++.++
T Consensus 6 ~~~k~~~~~-~~~-~~~~~~~r~~~~~l~l~~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ 77 (260)
T TIGR00950 6 VVIGQYLEG-QVP-LYFAVFRRLIFALLLLLPLLRRR-----P-PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA 77 (260)
T ss_pred HHHHHHHhc-CCC-HHHHHHHHHHHHHHHHHHHHHhc-----c-CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 467888765 334 66688888888877765544332 1 3334445555554 4688888999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC-CccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy12699 159 MLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND-LGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDM 237 (1269)
Q Consensus 159 ~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~-~~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~ 237 (1269)
++.++.|+++++++.+++|||++++++.+++++++|++++...+ .+.+..|++++++++++++.+.++.|+.. +..+.
T Consensus 78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~ 156 (260)
T TIGR00950 78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLV-KKEGP 156 (260)
T ss_pred HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCc
Confidence 99999999999999999999999999999999999998876543 44557899999999999999999999965 32333
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-HHHhhhccCccchhhhhhhHH
Q psy12699 238 GKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS-IMLCTQYNSALTTTIIGCLKN 316 (1269)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~-~~~~i~~~s~~t~sv~~~lk~ 316 (1269)
++.....+.+.++.++++++....++... .+...|..+++.++++....+. .++++++.++.+.+++.+++|
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 157 ELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34555556777888888777665543211 1333455567777776655555 778999999999999999999
Q ss_pred HHHHHHHhhccCcccccccceeehhhhhhhh
Q psy12699 317 ILLTYLGMFIGGDYVYSVNNFIGINISIIGS 347 (1269)
Q Consensus 317 v~~~lls~l~fge~~~s~~~~iG~~iil~G~ 347 (1269)
++++++++++++|++ +..+++|+++++.|+
T Consensus 230 v~~~ll~~~~~~E~~-~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGETL-SLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHHHHHhc
Confidence 999999999999965 999999999999886
No 114
>KOG0950|consensus
Probab=99.80 E-value=3.3e-19 Score=214.65 Aligned_cols=321 Identities=19% Similarity=0.184 Sum_probs=197.5
Q ss_pred hhcccccCCceEEeccCCCCchHHHHHH-----HhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeecc
Q psy12699 817 AESGVYCGPLKIHAGPTNSGKTYHALER-----FLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 817 ~~~~l~~g~~vlv~apTGsGKTl~~l~~-----l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~ 887 (1269)
....+++++|++..+||+.|||+++... +..++.++.+.|...-+.+....+.. .|.++....|......
T Consensus 233 s~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~- 311 (1008)
T KOG0950|consen 233 SLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK- 311 (1008)
T ss_pred cchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-
Confidence 3345678999999999999999999222 22377888888888888887777655 4555555555432211
Q ss_pred CCCCCCCEEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhcc----CcceEEEEeecCChH--
Q psy12699 888 GEEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL----MAKEIHVCGEAGAVD-- 951 (1269)
Q Consensus 888 ~~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l----~~~~~~l~~s~~~~~-- 951 (1269)
.....++.|||.|+.+ .+..++++|+||-|+++|.+||...+..+.+. ....+.++|..+..+
T Consensus 312 -~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 312 -RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred -cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 1225689999999554 27789999999999999999999987776432 222333444433333
Q ss_pred -HHHHHHHHc-----CCceEEEecccCCcccccc---cc--------------------ccc-cCCcCCC-CEEEEe-cH
Q psy12699 952 -LVKAIMMTT-----NEDVEVYKYKRLTELQIED---SA--------------------VGS-LDNIQPG-DCIVCF-SK 999 (1269)
Q Consensus 952 -~~~~l~~~~-----~~~~~v~~~~r~~~l~~~~---~~--------------------~~~-l~~~~~g-~~iv~~-s~ 999 (1269)
.++++.+.. -++++..++..+...-+.. .. +.. -+.++.+ .+++|+ +|
T Consensus 391 ~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk 470 (1008)
T KOG0950|consen 391 SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSK 470 (1008)
T ss_pred HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcc
Confidence 344443211 1222222222211111111 00 000 0112344 477777 99
Q ss_pred HhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhH
Q psy12699 1000 NDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTK 1079 (1269)
Q Consensus 1000 ~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR 1079 (1269)
+.|+.++..+...-.+...-+..+.+.+.......-...... -...+.+-...| +.+||+|++.++|
T Consensus 471 ~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~-----------ld~Vl~~ti~~G--vAyHhaGLT~eER 537 (1008)
T KOG0950|consen 471 KNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI-----------LDPVLAKTIPYG--VAYHHAGLTSEER 537 (1008)
T ss_pred cchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc-----------cchHHheecccc--ceecccccccchH
Confidence 999999977655322211000111100111111000000000 001112223344 8999999999999
Q ss_pred HHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc--ccccc
Q psy12699 1080 LAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH--FEKLA 1157 (1269)
Q Consensus 1080 ~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~--g~~~~ 1157 (1269)
+.++..|+ +|...|++||++++.|+|.+++.||.--+ .+ |. .+.+.-+|.||+|||||+|-+ |.+++
T Consensus 538 ~~iE~afr--~g~i~vl~aTSTlaaGVNLPArRVIiraP-~~-----g~---~~l~~~~YkQM~GRAGR~gidT~GdsiL 606 (1008)
T KOG0950|consen 538 EIIEAAFR--EGNIFVLVATSTLAAGVNLPARRVIIRAP-YV-----GR---EFLTRLEYKQMVGRAGRTGIDTLGDSIL 606 (1008)
T ss_pred HHHHHHHH--hcCeEEEEecchhhccCcCCcceeEEeCC-cc-----cc---chhhhhhHHhhhhhhhhcccccCcceEE
Confidence 99999999 99999999999999999999999998765 22 32 368899999999999999864 66666
Q ss_pred CCCCcc
Q psy12699 1158 GSHPAL 1163 (1269)
Q Consensus 1158 ~~~p~~ 1163 (1269)
...+..
T Consensus 607 I~k~~e 612 (1008)
T KOG0950|consen 607 IIKSSE 612 (1008)
T ss_pred Eeeccc
Confidence 555553
No 115
>KOG0329|consensus
Probab=99.80 E-value=2e-20 Score=192.38 Aligned_cols=254 Identities=16% Similarity=0.110 Sum_probs=158.0
Q ss_pred ccCCceEEeccCCCCchHHH-HHHHhc------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA-LERFLS------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~-l~~l~~------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~~ 889 (1269)
.-|-|++.+|..|.|||.++ +..+.. ...+++++.|||||-|+.++...+ +.++++..|+.......+
T Consensus 77 ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee 156 (387)
T KOG0329|consen 77 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE 156 (387)
T ss_pred hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH
Confidence 44789999999999999888 333222 346789999999999998665443 347888999987655442
Q ss_pred C--CCCCEEEEccccc-c-------CCCCeeEEEEecccccccC-CchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 890 E--KPANHVACTVEMT-S-------VNIPYEVAVIDEIQMMRDI-TRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 890 ~--~~~~Ivv~T~e~~-~-------~l~~~~~lViDEah~~~d~-~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
. .-++|+|+||..+ . .+++++..|+||+|.|++. +.....+.+....+.+.+.++++++....++..+.
T Consensus 157 ~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 157 LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHH
Confidence 2 2689999998832 2 3889999999999988531 22234455556666677778888887777776664
Q ss_pred Hc-CCceEEEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccC
Q psy12699 959 TT-NEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1036 (1269)
Q Consensus 959 ~~-~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~ 1036 (1269)
.. .++.++.. .+...-.+..+ .+..+-. ..+.-.++.+.|....+.-
T Consensus 237 kFmQdPmEi~v---------DdE~KLtLHGL--qQ~YvkLke~eKNrkl~dLLd~LeFNQ-------------------- 285 (387)
T KOG0329|consen 237 KFMQDPMEIFV---------DDEAKLTLHGL--QQYYVKLKENEKNRKLNDLLDVLEFNQ-------------------- 285 (387)
T ss_pred hhhcCchhhhc---------cchhhhhhhhH--HHHHHhhhhhhhhhhhhhhhhhhhhcc--------------------
Confidence 42 22222111 01100001000 0000000 0000011111111111110
Q ss_pred CCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEE
Q psy12699 1037 DPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIF 1115 (1269)
Q Consensus 1037 ~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~ 1115 (1269)
+.++--.. +| -.|. .+ +||||+.+||+|| .++.|+|
T Consensus 286 ------------------------------VvIFvKsv---~R----l~f~-----kr-~vat~lfgrgmdiervNi~~N 322 (387)
T KOG0329|consen 286 ------------------------------VVIFVKSV---QR----LSFQ-----KR-LVATDLFGRGMDIERVNIVFN 322 (387)
T ss_pred ------------------------------eeEeeehh---hh----hhhh-----hh-hHHhhhhccccCcccceeeec
Confidence 11111111 11 1144 23 9999999999999 9999999
Q ss_pred cCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCcc
Q psy12699 1116 YSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPAL 1163 (1269)
Q Consensus 1116 ~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~ 1163 (1269)
||+ |-+.++|+||+|||||.|.+|-++++...+.
T Consensus 323 Ydm--------------p~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 323 YDM--------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred cCC--------------CCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999 8889999999999999999999988766553
No 116
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.79 E-value=6.4e-18 Score=193.83 Aligned_cols=276 Identities=11% Similarity=0.017 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhccc--ccC-C-CChhhhHhhhhhHHHH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFI--QFP-N-YHRNIFFELMPLPFIY 138 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~--~~~-~-~~~~~~~~~~~~~l~~ 138 (1269)
++++.+++..+++.....+.|.+ . +++ |..++++|++++.+++......++. ..+ . .+++.+...+..++..
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI 83 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 44444444444455555567875 2 466 4567788888776644333221111 100 0 0222222223334556
Q ss_pred HHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHHH
Q psy12699 139 LGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNF 218 (1269)
Q Consensus 139 ~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~~ 218 (1269)
+++..++++|++++|++.++++.++.|+++++++++++|||+++++|++++++++|++++...+.+. .++++++++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~ 159 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAF 159 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999998876433222 246888999
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy12699 219 LTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIML 298 (1269)
Q Consensus 219 ~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~ 298 (1269)
+||+|.++.|+.. .+...+......+..+++.+..+++. ......+. ......+..+.+.++.+....++.++
T Consensus 160 ~~a~~~i~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 160 SFAFYGLVRKKIA-VEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMG---QNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHHc---cCCccccc---CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999843 21112333334444444443322211 10000000 11111233445555555566666888
Q ss_pred hhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 299 CTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 299 ~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
++++.+|...+++.+++|++++++|++++||.+ +..+++|+++++.|+.+.....
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~-~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKP-GADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999966 9999999999988887776443
No 117
>PRK09694 helicase Cas3; Provisional
Probab=99.79 E-value=1.6e-18 Score=218.97 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=57.7
Q ss_pred ceeEEEcCCCCHHhHH----HHhhhc-cCCCCC---eeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCH
Q psy12699 1065 TEVAVIYGSLPPTTKL----AQASKF-NDPDNP---CKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISV 1136 (1269)
Q Consensus 1065 i~v~~~Hg~l~~~eR~----~v~~~F-~~~~g~---~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 1136 (1269)
.++..+||+++..+|+ ++++.| + +|+ .+|||||+++|+||||++|.+|.... | .
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk--~g~r~~~~ILVaTQViE~GLDId~DvlItdla--------------P--i 649 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGK--NGKRNQGRILVATQVVEQSLDLDFDWLITQLC--------------P--V 649 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHh--cCCcCCCeEEEECcchhheeecCCCeEEECCC--------------C--H
Confidence 3488999999999995 456678 4 454 47999999999999999998887543 4 6
Q ss_pred hHHHHHhcccCCCCCc
Q psy12699 1137 SAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1137 ~~y~QR~GRaGR~G~~ 1152 (1269)
+.++||+||+||.+++
T Consensus 650 dsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 650 DLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHhccCCCCCC
Confidence 8999999999998864
No 118
>KOG0354|consensus
Probab=99.79 E-value=2e-18 Score=207.29 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=62.7
Q ss_pred CCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC
Q psy12699 1072 GSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1072 g~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
.+|++.++.++++.|+ +|+++|||||+++|.|+|| .++.||-||. -.++-..+||.|| ||+.
T Consensus 456 ~gmtqk~Q~evl~~Fr--~G~~NvLVATSV~EEGLDI~ec~lVIcYd~--------------~snpIrmIQrrGR-gRa~ 518 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFR--DGEINVLVATSVAEEGLDIGECNLVICYDY--------------SSNPIRMVQRRGR-GRAR 518 (746)
T ss_pred cccCHHHHHHHHHHHh--CCCccEEEEecchhccCCcccccEEEEecC--------------CccHHHHHHHhcc-cccc
Confidence 6899999999999999 9999999999999999999 9999999998 3457789999999 9977
Q ss_pred CccccccCC
Q psy12699 1151 THFEKLAGS 1159 (1269)
Q Consensus 1151 ~~g~~~~~~ 1159 (1269)
+.-.+++..
T Consensus 519 ns~~vll~t 527 (746)
T KOG0354|consen 519 NSKCVLLTT 527 (746)
T ss_pred CCeEEEEEc
Confidence 665554433
No 119
>KOG0349|consensus
Probab=99.78 E-value=2e-18 Score=189.18 Aligned_cols=296 Identities=16% Similarity=0.131 Sum_probs=178.7
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCC-----Cc--eeeecceeeeccC--CCCCCCEEEEcccccc--------CCCCee
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGT-----PC--DLITGEEKKFIQG--EEKPANHVACTVEMTS--------VNIPYE 910 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~-----~v--~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~ 910 (1269)
.++++|+-|.||||.|+++.++++.. ++ -++.|+....+|. ...+.+|+|+||..+. .+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 68899999999999999997776532 22 2555655444443 2337899999987433 267899
Q ss_pred EEEEecccccccCCchhHHHHHHhccCc---c----eEEEEeecCC----hHHHHHHH------HHcCCc----------
Q psy12699 911 VAVIDEIQMMRDITRGWAWTRALLGLMA---K----EIHVCGEAGA----VDLVKAIM------MTTNED---------- 963 (1269)
Q Consensus 911 ~lViDEah~~~d~~rg~~~~~~ll~l~~---~----~~~l~~s~~~----~~~~~~l~------~~~~~~---------- 963 (1269)
++|+||+|.++..+....+.+..-.++. + +..+|+..-. .+.-+.+. +..+++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999764443333333222211 1 1112211100 01111110 000000
Q ss_pred ----------------------eEEEecccCCcccc-----------ccccccccCCcCCCCEEEEe-cHHhHHHHHHHH
Q psy12699 964 ----------------------VEVYKYKRLTELQI-----------EDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGI 1009 (1269)
Q Consensus 964 ----------------------~~v~~~~r~~~l~~-----------~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L 1009 (1269)
+.-..+-++..... .+..+..+++....++|+|+ ++.+|+.+.+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 00000001100000 00111122333445677777 888888888888
Q ss_pred HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCC
Q psy12699 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDP 1089 (1269)
Q Consensus 1010 ~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~ 1089 (1269)
.+.+.+ .+++..+||+..+.||.+.++.|+
T Consensus 526 ~qkgg~------------------------------------------------~~scvclhgDrkP~Erk~nle~Fk-- 555 (725)
T KOG0349|consen 526 NQKGGK------------------------------------------------HYSCVCLHGDRKPDERKANLESFK-- 555 (725)
T ss_pred HHcCCc------------------------------------------------cceeEEEecCCChhHHHHHHHhhh--
Confidence 776542 234888899999999999999999
Q ss_pred CCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccccccc
Q psy12699 1090 DNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGE 1168 (1269)
Q Consensus 1090 ~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~ 1168 (1269)
++..+.|||||+++||+|| ++.++||..+ |.+..+|+||+||+||+.+-|-++.......+
T Consensus 556 k~dvkflictdvaargldi~g~p~~invtl--------------pd~k~nyvhrigrvgraermglaislvat~~e---- 617 (725)
T KOG0349|consen 556 KFDVKFLICTDVAARGLDITGLPFMINVTL--------------PDDKTNYVHRIGRVGRAERMGLAISLVATVPE---- 617 (725)
T ss_pred hcCeEEEEEehhhhccccccCCceEEEEec--------------CcccchhhhhhhccchhhhcceeEEEeeccch----
Confidence 9999999999999999999 9999999998 78899999999999999988887433221100
Q ss_pred chhhhhhhhhHHHhhccCCCCcccc--cccceEeeCCCCh-HHHHHhhcCCC
Q psy12699 1169 REIDLISVSAALQIAGRAGRFNTHF--EKGFVTTFKPDDL-PILKNLLAQSP 1217 (1269)
Q Consensus 1169 ~~~~~~~~~~~~qia~~~g~~~~~~--~~~~v~~~~~~~~-~~l~~~~~~~~ 1217 (1269)
++=.-.-...+.+...+.. ..|-+-|+++..+ ..+++.++-..
T Consensus 618 ------kvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti 663 (725)
T KOG0349|consen 618 ------KVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITI 663 (725)
T ss_pred ------heeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhccee
Confidence 0101122233444444442 4566777765433 44666554433
No 120
>KOG1582|consensus
Probab=99.76 E-value=7.1e-18 Score=175.28 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=244.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHH
Q psy12699 60 TTIAKISTALFYALCSLFITIVNKSVLTSYVFP-SFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIY 138 (1269)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~-~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (1269)
+-...+++....++.+....++..++++..||. +.|.+++.|++.-..+.++....- +..+ +...++....++++.
T Consensus 40 kw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~--~~k~-r~iP~rtY~~la~~t 116 (367)
T KOG1582|consen 40 KWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI--QTKR-RVIPWRTYVILAFLT 116 (367)
T ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee--cccc-eecchhHhhhhHhhh
Confidence 334555666667777888888999999988986 788899999887765554433221 1111 233456677788888
Q ss_pred HHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC----CccchHHHHHHH
Q psy12699 139 LGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND----LGYNFQGYVFVL 214 (1269)
Q Consensus 139 ~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~----~~~~~~G~ll~l 214 (1269)
.+++.++|.|+.|++.+...+.|++..+.+++.+.++-++|+++..+.+..++.+|.++++..| ..|+..|+.+.-
T Consensus 117 ~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIs 196 (367)
T KOG1582|consen 117 VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMIS 196 (367)
T ss_pred hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998865 468899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy12699 215 LNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNY 294 (1269)
Q Consensus 215 ~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~ 294 (1269)
.|.++.|+-.-+|++.+ +....+..++++|...+++++++.....+++..+.|.+...+....+...++-+..+++...
T Consensus 197 gALl~DA~iGNvQEk~m-~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~ 275 (367)
T KOG1582|consen 197 GALLADAVIGNVQEKAM-KMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIV 275 (367)
T ss_pred HHHHHHHHhhHHHHHHH-hhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHH
Confidence 99999999999999988 44566789999999999999999999999999999987665555555566666666777666
Q ss_pred HHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 295 SIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 295 ~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
+....++..++.+++.+.+.++.+++++|+++|.. |+|....-|..+++.|+++-.+.+.
T Consensus 276 ~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsK-PfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 276 FVLALIKLFGALIAATVTTARKAVTILLSFLLFSK-PFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcC-chHHHHhhhhHHHHHHHHhhcccCC
Confidence 66678999999999999999999999999999998 7899999999999999999887763
No 121
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.76 E-value=2e-17 Score=210.16 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=76.1
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
..|+++..+||+|++.+|+++.+.|++++|..+|||||+++++|+|+ .+++|||||+ |.++..|.
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDl--------------P~nP~~~e 581 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDL--------------PFNPDLLE 581 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecC--------------CCCHHHHH
Confidence 45888999999999999999999999434579999999999999999 9999999999 99999999
Q ss_pred HHhcccCCCCCccccccCC
Q psy12699 1141 QIAGRAGRFNTHFEKLAGS 1159 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~~~~~ 1159 (1269)
||+||+||.|+++.+..+.
T Consensus 582 QRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 582 QRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred HHhcccccCCCCceEEEEE
Confidence 9999999999998874443
No 122
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.74 E-value=5.6e-18 Score=171.16 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=140.0
Q ss_pred HHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHHHhh
Q psy12699 593 ISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVF 672 (1269)
Q Consensus 593 ~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 672 (1269)
..+++.||.+|+.|++-||++++..+|++-..+.+.|.++|++.+.+++.+|++++. ...+|+|+|.+++.+.||.+
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt 84 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYT 84 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999998865 67799999999999999999
Q ss_pred hhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCC--------Ccce---ehhhhH
Q psy12699 673 GLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSL--------PVDL---HVVLSD 740 (1269)
Q Consensus 673 ~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~--------~f~~---~~~l~~ 740 (1269)
+..||+|++||.|+++|++|++.++.+|.+++|++.......|.++ ++..++++++|. .+|. |+..|+
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Nc 164 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNC 164 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhh
Confidence 9999999999999999999999999999999999999999999998 599999999999 6776 899999
Q ss_pred hhcC
Q psy12699 741 IIQG 744 (1269)
Q Consensus 741 i~~~ 744 (1269)
+..+
T Consensus 165 lssa 168 (309)
T COG5070 165 LSSA 168 (309)
T ss_pred HhHH
Confidence 9877
No 123
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.73 E-value=8.6e-17 Score=193.16 Aligned_cols=278 Identities=18% Similarity=0.162 Sum_probs=160.1
Q ss_pred CCceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhcc-CC--CceeeecceeeeccCCCCCCCEEEEc
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDR-GT--PCDLITGEEKKFIQGEEKPANHVACT 899 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~-g~--~v~~~~G~~~~~~~~~~~~~~Ivv~T 899 (1269)
++..++++|||+|||.+++..+.. ..+++|++||++|+.|+++++.+. +. .++...|+..... ..+|+|+|
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~vat 129 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELE-----PAKVTVAT 129 (442)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccC-----CCcEEEEE
Confidence 889999999999999999776665 455999999999999999887654 33 3566666644311 14799999
Q ss_pred cccccC--------CCCeeEEEEecccccccCCchhHHHHHHhccCcce--EEEEeecCChH--HHHHHHHHcCCceE-E
Q psy12699 900 VEMTSV--------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKE--IHVCGEAGAVD--LVKAIMMTTNEDVE-V 966 (1269)
Q Consensus 900 ~e~~~~--------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~--~~l~~s~~~~~--~~~~l~~~~~~~~~-v 966 (1269)
.+.+.. ..+++++|+||||+...+ .+..+...+.... +-+.+++...+ ....+....|..+. +
T Consensus 130 ~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~ 205 (442)
T COG1061 130 VQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEV 205 (442)
T ss_pred hHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeec
Confidence 774332 337999999999999753 2222332222221 12222211111 23334443331111 1
Q ss_pred E-----ecccCCccccccccccc-------cCCc--CCC---------------CEEEEecHHhHHHHHHHHHhc--CCc
Q psy12699 967 Y-----KYKRLTELQIEDSAVGS-------LDNI--QPG---------------DCIVCFSKNDVYTVSRGIESR--GTE 1015 (1269)
Q Consensus 967 ~-----~~~r~~~l~~~~~~~~~-------l~~~--~~g---------------~~iv~~s~~~~~~l~~~L~~~--~~~ 1015 (1269)
. ......|..+....... .... ... ..+..........+...+... +.+
T Consensus 206 ~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (442)
T COG1061 206 SLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDK 285 (442)
T ss_pred CHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCc
Confidence 0 00111111111100000 0000 000 000011122222222222221 122
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeE
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKV 1095 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~V 1095 (1269)
+.++..+..+...... .+...|+ +..+.|..+.+||+++++.|+ .|.+++
T Consensus 286 ~lif~~~~~~a~~i~~---------------------------~~~~~~~-~~~it~~t~~~eR~~il~~fr--~g~~~~ 335 (442)
T COG1061 286 TLIFASDVEHAYEIAK---------------------------LFLAPGI-VEAITGETPKEEREAILERFR--TGGIKV 335 (442)
T ss_pred EEEEeccHHHHHHHHH---------------------------HhcCCCc-eEEEECCCCHHHHHHHHHHHH--cCCCCE
Confidence 2222222222211111 2233444 778899999999999999999 888999
Q ss_pred EEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCC-CCCccc
Q psy12699 1096 MVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR-FNTHFE 1154 (1269)
Q Consensus 1096 LVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR-~G~~g~ 1154 (1269)
||++.++..|+|+ +++.+|..+. ..|...|.||+||.-| ...++.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~--------------t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRP--------------TGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCC--------------CCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999 9999999887 4679999999999999 343443
No 124
>KOG1442|consensus
Probab=99.71 E-value=1.3e-18 Score=181.34 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhHhhHhhhhhhhhhcc--CCCChhHHHHHHHHHHHHHHHHHHHHc-----CccccC--CCChhhhhhhch
Q psy12699 591 AKISTALFYALCSLFITIVNKSVLTS--YVFPSFKIVALGQLLTTVVVLYVGKKL-----RFIQFP--NYHRNIFFELMP 661 (1269)
Q Consensus 591 ~~~~~~~~y~~~S~~~~~~NK~~l~~--~~f~~~~~l~~~q~~~~~~~~~~~~~~-----g~~~~~--~~~~~~~~~~~p 661 (1269)
+...++..|+++||+++|+||+++++ -..+.|.|.+++||+++..+|.+++++ +.+++| +++.+.+++++|
T Consensus 28 ~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlp 107 (347)
T KOG1442|consen 28 QVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLP 107 (347)
T ss_pred chhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcc
Confidence 34557788999999999999999998 578899999999999999999988753 566666 466699999999
Q ss_pred hhHHHHHHHhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccC---CCcce---
Q psy12699 662 LPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQS---LPVDL--- 734 (1269)
Q Consensus 662 ~~~~~~~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d---~~f~~--- 734 (1269)
++++|++||.++|+||+|++|+||++-|++|.+|++++.|++++++.+.....+|.+ |+|-.++.=.| -.+.|
T Consensus 108 lsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~Gv 187 (347)
T KOG1442|consen 108 LSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGV 187 (347)
T ss_pred hhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhh
Confidence 999999999999999999999999999999999999999999999999999999998 46666654444 23444
Q ss_pred -ehhhhHhhcC
Q psy12699 735 -HVVLSDIIQG 744 (1269)
Q Consensus 735 -~~~l~~i~~~ 744 (1269)
+++++.++.+
T Consensus 188 ifGVlaSl~vA 198 (347)
T KOG1442|consen 188 IFGVLASLAVA 198 (347)
T ss_pred HHHHHHHHHHH
Confidence 3555555444
No 125
>KOG0949|consensus
Probab=99.70 E-value=6.6e-17 Score=193.06 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=94.6
Q ss_pred ccCCceEEeccCCCCchHHH---HHHHhc---CCcEEEEcchHHHHHHHHHHHhccC-C----CceeeecceeeeccCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA---LERFLS---AESGVYCGPLKMLATEVFKKSNDRG-T----PCDLITGEEKKFIQGEE 890 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~---l~~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g-~----~v~~~~G~~~~~~~~~~ 890 (1269)
-.++..+++|||.+|||.+. +...++ ...+++++||++|++|+...+..+- . .-..+.|...+.-+...
T Consensus 524 Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp 603 (1330)
T KOG0949|consen 524 DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINP 603 (1330)
T ss_pred hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCc
Confidence 34667788888888888664 444444 6778999999999999987664321 1 11112233222222245
Q ss_pred CCCCEEEEcccccc-----------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH
Q psy12699 891 KPANHVACTVEMTS-----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~-----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
+.++|+|+-||.+. +..+++++|+||+|.++.++-|..|+..+...++.-+.+.++..++.....+.
T Consensus 604 ~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~L~LSATigN~~l~qkWl 681 (1330)
T KOG0949|consen 604 WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPFLVLSATIGNPNLFQKWL 681 (1330)
T ss_pred hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCeeEEecccCCHHHHHHHH
Confidence 68999999988332 25689999999999999998999999998887777777777766665544443
No 126
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.8e-16 Score=195.11 Aligned_cols=102 Identities=21% Similarity=0.143 Sum_probs=81.2
Q ss_pred cchhhhhhhccCccccc-cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc----Cce-----E
Q psy12699 1043 KVMVATDAIGMGLNFRG-IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL----SIR-----R 1112 (1269)
Q Consensus 1043 ~~l~~t~~~~~~~~~~~-l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi----~v~-----~ 1112 (1269)
+.|+.+........+.+ |.+.|++...+||++..+|++.+.++++ +|. |+||||+++||.|| +|. +
T Consensus 442 pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~--~g~--VtIATnmAGRGtDI~l~~~V~~~GGLh 517 (796)
T PRK12906 442 PVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQ--RGA--VTIATNMAGRGTDIKLGPGVKELGGLA 517 (796)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCC--Cce--EEEEeccccCCCCCCCCcchhhhCCcE
Confidence 34443333333333332 3457889999999999999998888888 666 99999999999999 577 9
Q ss_pred EEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1113 VIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1113 VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
||+++. |.|...|.||+|||||.|.+|.+..+...+
T Consensus 518 VI~te~--------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 518 VIGTER--------------HESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEeeec--------------CCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 999998 889999999999999999999996665555
No 127
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.2e-15 Score=164.61 Aligned_cols=260 Identities=15% Similarity=0.181 Sum_probs=156.3
Q ss_pred cccCCceEEeccCCCCchHHH----HHHHhcCCcEEEEcchHHHHHHHHHHHhc-c-CCCceeeecceeeeccCCCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA----LERFLSAESGVYCGPLKMLATEVFKKSND-R-GTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~----l~~l~~~~~~lil~Ptr~La~Qi~~~l~~-~-g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
+-+.++.++.|-||+|||... ..++..|.++.+..|+...+.+++.|+++ + +..+.+++|+...+- ..+
T Consensus 113 i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f-----r~p 187 (441)
T COG4098 113 IKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF-----RAP 187 (441)
T ss_pred HHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc-----ccc
Confidence 466789999999999999765 33444589999999999999999999976 3 357778888854422 367
Q ss_pred EEEEc-cccccCCCCeeEEEEecccccccCCchhHHHHHHhccCcc-eEEEEeecCCh-HHHHHHHHHcCCceEEE----
Q psy12699 895 HVACT-VEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAK-EIHVCGEAGAV-DLVKAIMMTTNEDVEVY---- 967 (1269)
Q Consensus 895 Ivv~T-~e~~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~-~~~l~~s~~~~-~~~~~l~~~~~~~~~v~---- 967 (1269)
++|+| ++.+..-+.+|++||||+|-+-= .-...+..++.....+ .-.+.-++++. .+.+++....-..+.+.
T Consensus 188 lvVaTtHQLlrFk~aFD~liIDEVDAFP~-~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH 266 (441)
T COG4098 188 LVVATTHQLLRFKQAFDLLIIDEVDAFPF-SDDQSLQYAVKKARKKEGATIYLTATPTKKLERKILKGNLRILKLPARFH 266 (441)
T ss_pred EEEEehHHHHHHHhhccEEEEeccccccc-cCCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhCCeeEeecchhhc
Confidence 88887 66777888999999999998710 1112333333333222 12233334443 33344332111111111
Q ss_pred ecccCCcccccc----ccc----------cccC-CcCCC-CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHH
Q psy12699 968 KYKRLTELQIED----SAV----------GSLD-NIQPG-DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLA 1030 (1269)
Q Consensus 968 ~~~r~~~l~~~~----~~~----------~~l~-~~~~g-~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~ 1030 (1269)
...-++|-.... +.+ ..++ ..+.| ..++|+ +....+++++.|++.-...
T Consensus 267 ~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~-------------- 332 (441)
T COG4098 267 GKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE-------------- 332 (441)
T ss_pred CCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc--------------
Confidence 111111111100 000 0000 01122 344444 6666666666663321110
Q ss_pred HhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-C
Q psy12699 1031 QASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-S 1109 (1269)
Q Consensus 1031 ~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~ 1109 (1269)
.++..|+. ...|.+..+.|| +|+.++|++|.++|||+++ +
T Consensus 333 -----------------------------------~i~~Vhs~--d~~R~EkV~~fR--~G~~~lLiTTTILERGVTfp~ 373 (441)
T COG4098 333 -----------------------------------TIASVHSE--DQHRKEKVEAFR--DGKITLLITTTILERGVTFPN 373 (441)
T ss_pred -----------------------------------ceeeeecc--CccHHHHHHHHH--cCceEEEEEeehhhccccccc
Confidence 13344443 345666679999 9999999999999999999 9
Q ss_pred ceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC
Q psy12699 1110 IRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1110 v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~ 1151 (1269)
|+..+.-.- . +-.+.+..+|.+||+||.-.
T Consensus 374 vdV~Vlgae-h-----------~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 374 VDVFVLGAE-H-----------RVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred ceEEEecCC-c-----------ccccHHHHHHHhhhccCCCc
Confidence 986654322 1 13578999999999999543
No 128
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.68 E-value=1.3e-15 Score=173.58 Aligned_cols=267 Identities=13% Similarity=0.082 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-HHHHhh-cccccCCCChhhhHhhhhhHHHHHHHhhhc
Q psy12699 68 ALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVL-YVGKKL-RFIQFPNYHRNIFFELMPLPFIYLGNMVFG 145 (1269)
Q Consensus 68 ~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (1269)
.++..++.....+..|...++ . + + .++..+..+.+++ ++.... .....++.+++.+..++..++...+...+.
T Consensus 6 ~~~aa~~~a~~~~~~k~~~~~-~-~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 6 VVFSALMHAGWNLMAKSHADK-E-P-D--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHhhcCCc-h-h-H--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 344444555555577855544 1 1 2 1233333333333 222221 112222323333334444455578888888
Q ss_pred cccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC-ccchHHHHHHHHHHHHHHHHH
Q psy12699 146 LGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL-GYNFQGYVFVLLNNFLTAVNG 224 (1269)
Q Consensus 146 ~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~-~~~~~G~ll~l~s~~~~a~~~ 224 (1269)
+.++++.+++.+..+.++.|+++.++++++++|++++++|+|++++++|++++...+. ..+..|.++++++++++++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987765432 345578889999999999999
Q ss_pred HHHHhhcCCCCCCChH-HHHHHHHHHHHHHH-HHHHHHh---hhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12699 225 VYTKKKLDPKKDMGKY-GLMFYSSVFMLPVT-VIFIYLS---DDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLC 299 (1269)
Q Consensus 225 v~~k~~l~~~~~~~~~-~l~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~ 299 (1269)
++.|+.. + +.++. ....+.. .+.+.. +++..+. ++. . +. ......+..+..+++.+.+...+.+++
T Consensus 161 i~~k~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~s~l~~~l~~~a 231 (281)
T TIGR03340 161 LSDKAAA-L--GVPAFYSALGYLG-IGFLAMGWPFLLLYLKRHGR-S-MF---PYARQILPSATLGGLMIGGAYALVLWA 231 (281)
T ss_pred hhccccc-c--chhcccccHHHHH-HHHHHHHHHHHHHHHHHhcc-c-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888742 1 22222 1222221 222211 2222211 110 0 00 011122223334444444445557789
Q ss_pred hhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhh
Q psy12699 300 TQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSIL 349 (1269)
Q Consensus 300 i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l 349 (1269)
+++.++...+.+.++.|++++++|++++||.+ +..+++|++++++|+++
T Consensus 232 l~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~-~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 232 MTRLPVATVVALRNTSIVFAVVLGIWFLNERW-YLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HhhCCceEEEeecccHHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999965 99999999999999875
No 129
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1.4e-15 Score=188.12 Aligned_cols=99 Identities=19% Similarity=0.063 Sum_probs=74.8
Q ss_pred ceEEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 826 LKIHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
.-++.++||+|||+++.. ..+.+..+.+++||++||.|.++.+.. +|.++++++|+....++.....+||++
T Consensus 97 G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y~~dIvy 176 (896)
T PRK13104 97 GNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAYKADIVY 176 (896)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHhCCCEEE
Confidence 347888999999988822 224477899999999999999988865 577889999986554444444789999
Q ss_pred Eccccc--c----C---------CCCeeEEEEeccccc-ccCC
Q psy12699 898 CTVEMT--S----V---------NIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 898 ~T~e~~--~----~---------l~~~~~lViDEah~~-~d~~ 924 (1269)
+|+..+ + . .+.+.++||||||.+ .|+.
T Consensus 177 gT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 177 GTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred ECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 998743 1 1 258999999999987 3433
No 130
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=2.7e-14 Score=163.67 Aligned_cols=274 Identities=14% Similarity=0.140 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhh
Q psy12699 65 ISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVF 144 (1269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (1269)
....+++.+.+.......|..... ..++....+.+.+...++.......+.....+...+..+..+..++.......+
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (292)
T COG0697 9 LLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLL 86 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 344444555555555566666544 233444556577766665333332221111111112223344444557888899
Q ss_pred ccccccccchhHHHHHHHhHHHHHHHHHH-HHhcccCCcceehhhHHHhhhceeeeecCCccc---hHHHHHHHHHHHHH
Q psy12699 145 GLGGTKELSLPMFTMLRRFSILMTMIAEY-YVLHIVPNRSVKITVGMMIGGAVIAALNDLGYN---FQGYVFVLLNNFLT 220 (1269)
Q Consensus 145 ~~~sL~~is~s~~~~i~~~~Pift~lls~-l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~---~~G~ll~l~s~~~~ 220 (1269)
++.++++++++.++++.++.|+++.+++. ++++||++++++++++++++|++++..++...+ ..|.++++++++++
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~ 166 (292)
T COG0697 87 LFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLW 166 (292)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 777999999999999999999999998766543 58999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHH
Q psy12699 221 AVNGVYTKKKLDPKKDMGKYGLMF-YSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFI-LNYSIML 298 (1269)
Q Consensus 221 a~~~v~~k~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~-~~~~~~~ 298 (1269)
+++.++.++.. +.++....+ +... ....+.......+.. .......|..+.+.|+++.. ..++.++
T Consensus 167 a~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~i~~~~~~~ 234 (292)
T COG0697 167 ALYTALVKRLS----RLGPVTLALLLQLL--LALLLLLLFFLSGFG------APILSRAWLLLLYLGVFSTGLAYLLWYY 234 (292)
T ss_pred HHHHHHHHHhc----CCChHHHHHHHHHH--HHHHHHHHHHhcccc------ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999854 345555555 3322 111111111111110 12233445567777777775 4445778
Q ss_pred hhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhh
Q psy12699 299 CTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIV 353 (1269)
Q Consensus 299 ~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~ 353 (1269)
.++..++...+++..+.+++++++++++++|.+ +..+++|+++++.|+.+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~-~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPL-SPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999966 999999999999999998765
No 131
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=5.2e-15 Score=183.13 Aligned_cols=98 Identities=20% Similarity=0.081 Sum_probs=75.5
Q ss_pred eEEeccCCCCchHHHHH-H---HhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 827 KIHAGPTNSGKTYHALE-R---FLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 827 vlv~apTGsGKTl~~l~-~---l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
-+..++||+|||+++.. + .+.+..+-+++||++||.|.++.+.. +|.++++++|+....++.+...++|+++
T Consensus 97 ~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~~dI~yg 176 (830)
T PRK12904 97 KIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYG 176 (830)
T ss_pred chhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcCCCeEEE
Confidence 38889999999998822 2 23477888999999999999988764 5789999999876655554457999999
Q ss_pred ccccc--c-------------CCCCeeEEEEeccccc-ccCC
Q psy12699 899 TVEMT--S-------------VNIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 899 T~e~~--~-------------~l~~~~~lViDEah~~-~d~~ 924 (1269)
|+.-+ + ..+.+.++||||||.+ .|+.
T Consensus 177 T~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 177 TNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred CCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 96633 1 1568999999999987 3443
No 132
>KOG3912|consensus
Probab=99.64 E-value=4.2e-15 Score=155.66 Aligned_cols=283 Identities=18% Similarity=0.200 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHHHHHHHhhccc-ccCC--------C--Chhhh--
Q psy12699 67 TALFYALCSLFITIVNKSVLT-----SYVFPSFKIVALGQLLTTVVVLYVGKKLRFI-QFPN--------Y--HRNIF-- 128 (1269)
Q Consensus 67 ~~~~~~~~~~~~~~~nK~~l~-----~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~-~~~~--------~--~~~~~-- 128 (1269)
..++..++++.-+++.||+=+ .-||+.|++-+...++.-+++++++...+.. ..+. . ..+.+
T Consensus 7 ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p 86 (372)
T KOG3912|consen 7 LSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP 86 (372)
T ss_pred hhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc
Confidence 334555667777888999765 2358888876777777666666554332211 1010 0 11122
Q ss_pred HhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC------
Q psy12699 129 FELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND------ 202 (1269)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~------ 202 (1269)
..++|.+++-.....+-|.+|.+++++.+||++....+||.+++..+++.+++.++|+++..+..|++++...|
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 35667788988888899999999999999999999999999999999999999999999999999998886643
Q ss_pred ----CccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH-----------------h
Q psy12699 203 ----LGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYL-----------------S 261 (1269)
Q Consensus 203 ----~~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~ 261 (1269)
.+.-..|.++.+++-+..|+..++.+|.+ ++++.+|.+...|..+++.+++..++.. .
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l-~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~ 245 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQL-KKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL 245 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhh-hhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence 23347899999999999999999999988 5578999999999999997666554432 1
Q ss_pred hhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehh
Q psy12699 262 DDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGIN 341 (1269)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~ 341 (1269)
++|..+|...... +.....+....+.-.+.|+......+..|+.|-.++..++..+..+++...+.| .|+..++.|.+
T Consensus 246 eD~~~~~~~~~e~-p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E-~f~llqilGFl 323 (372)
T KOG3912|consen 246 EDWGDAFAALQES-PSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE-YFHLLQILGFL 323 (372)
T ss_pred hhHHHHHHHhcCC-chhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH-HHHHHHHHHHH
Confidence 2222222211111 111111111122222346666678899999999999999999999999999999 67999999999
Q ss_pred hhhhhhhhhhh
Q psy12699 342 ISIIGSILYTI 352 (1269)
Q Consensus 342 iil~G~~l~~~ 352 (1269)
+.+.|+++|+.
T Consensus 324 iLi~Gi~lY~~ 334 (372)
T KOG3912|consen 324 ILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHH
Confidence 99999999973
No 133
>KOG1583|consensus
Probab=99.63 E-value=1.1e-15 Score=160.36 Aligned_cols=283 Identities=15% Similarity=0.200 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhcc
Q psy12699 67 TALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGL 146 (1269)
Q Consensus 67 ~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (1269)
..++.++|+... .-..+.+..+ ....++++.|+++...--++... +....+ ++-.++.++.....++....+.|
T Consensus 9 ~~vf~GCcsnvv--~lE~L~~~~p-gsgNLITFaqFlFia~eGlif~s-kf~~~k--~kiplk~Y~i~V~mFF~vnv~NN 82 (330)
T KOG1583|consen 9 SLVFGGCCSNVV--FLELLVRNEP-GSGNLITFAQFLFIATEGLIFTS-KFFTVK--PKIPLKDYAITVAMFFIVNVTNN 82 (330)
T ss_pred HHHHHhhhchHH--HHHHHHHhCC-CCeeehHHHHHHHHHHhceeeec-cccccC--CCCchhhhheehheeeeeeeecc
Confidence 334445554433 3355555422 23456889998766554333221 111111 22234455555555677778999
Q ss_pred ccccc-cchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC-------------------ccc
Q psy12699 147 GGTKE-LSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL-------------------GYN 206 (1269)
Q Consensus 147 ~sL~~-is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~-------------------~~~ 206 (1269)
+++++ +|++...++++-+++.++++++++++++++.+++.+++++.+|+++.++.+. -.|
T Consensus 83 ~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w 162 (330)
T KOG1583|consen 83 YALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWW 162 (330)
T ss_pred ceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHH
Confidence 99999 8999999999999999999999999999999999999999999999876311 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHhhc-------ccchHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFI-YLSDDYAKVLEYE-------YLWDMWF 278 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~ 278 (1269)
..|+.+...+.+..|.-.++++..+ ++++.++-+.+||+.+++++..+... -+..+|...+..+ ...-+..
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y-~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~ 241 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTY-QKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSM 241 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHH
Confidence 5799999999999999999999988 55788999999999999888765432 1122233333321 0112445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 279 QIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 279 ~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
|+++++.++..++.--..+.....++++|++++-++++.++.++|++.|.+ +++++.|+|.+++++|.++|.-...+.
T Consensus 242 ~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~N-pft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 242 WVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFEN-PFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecC-CCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 777888877766655556667789999999999999999999999999999 789999999999999999998655443
No 134
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.63 E-value=4.6e-15 Score=193.19 Aligned_cols=66 Identities=26% Similarity=0.366 Sum_probs=57.5
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCe-eEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPC-KVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAG 1144 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~-~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~G 1144 (1269)
+..+||+.+ +++.++++|+ ++.. +|+|++|++.+|+|+ +|++||+++. +.|...|.||+|
T Consensus 734 v~~itg~~~--~~~~li~~Fk--~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp--------------vkS~~lf~QmIG 795 (1123)
T PRK11448 734 VIKITGSID--KPDQLIRRFK--NERLPNIVVTVDLLTTGIDVPSICNLVFLRR--------------VRSRILYEQMLG 795 (1123)
T ss_pred eEEEeCCcc--chHHHHHHHh--CCCCCeEEEEecccccCCCcccccEEEEecC--------------CCCHHHHHHHHh
Confidence 566788875 5677999999 6665 799999999999999 9999999998 678999999999
Q ss_pred ccCCCC
Q psy12699 1145 RAGRFN 1150 (1269)
Q Consensus 1145 RaGR~G 1150 (1269)
|+.|..
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999953
No 135
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.62 E-value=3.2e-15 Score=174.83 Aligned_cols=153 Identities=12% Similarity=0.014 Sum_probs=132.1
Q ss_pred hhHHHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCC--hhhhhhhchhhHHHH
Q psy12699 590 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYH--RNIFFELMPLPFIYL 667 (1269)
Q Consensus 590 ~~~~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~p~~~~~~ 667 (1269)
.+..+..+.|..+|+..+++||++++.+ |+|++++++|++++++++.+++..|..+.++++ +...++++|+++++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4555666667778899999999999985 556669999999999988888888877666664 357899999999999
Q ss_pred HHHhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCccee----hhhhHhh
Q psy12699 668 GNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPVDLH----VVLSDII 742 (1269)
Q Consensus 668 ~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f~~~----~~l~~i~ 742 (1269)
+.....+.|+++.+++|+|++|+++|++++++.+++++++++++.++++++ ++|+++++.+|.+|++. ++++.++
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 205 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG 205 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999 69999999999999984 4455554
Q ss_pred cC
Q psy12699 743 QG 744 (1269)
Q Consensus 743 ~~ 744 (1269)
.+
T Consensus 206 ~a 207 (350)
T PTZ00343 206 SS 207 (350)
T ss_pred HH
Confidence 44
No 136
>KOG4510|consensus
Probab=99.61 E-value=2e-16 Score=164.63 Aligned_cols=219 Identities=13% Similarity=0.106 Sum_probs=178.2
Q ss_pred HhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC-----
Q psy12699 129 FELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL----- 203 (1269)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~----- 203 (1269)
+.+++.|+..+.+..+.|+|+.|+|++.++++.+++|+||.+++++++||+++....++.++.+.||++++.+.+
T Consensus 98 ~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~ 177 (346)
T KOG4510|consen 98 KWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDT 177 (346)
T ss_pred EEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCC
Confidence 355667888888888999999999999999999999999999999999999999999999999999999987421
Q ss_pred ---------ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccc
Q psy12699 204 ---------GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLW 274 (1269)
Q Consensus 204 ---------~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1269)
+.+..|.+.++.+++..|.-.|+.|+ +++ +.+....+.|..+++++..++.....++ ++.++..
T Consensus 178 t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~-iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~----~~lP~cg 250 (346)
T KOG4510|consen 178 TEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRY-IGK--NAHAIMSVSYFSLITLVVSLIGCASIGA----VQLPHCG 250 (346)
T ss_pred ccccccccccccCCchHHHHHhHhhhhhHHHHHHH-hhc--cccEEEEehHHHHHHHHHHHHHHhhccc----eecCccc
Confidence 23457888899999988888888888 533 4667777777777777777766554442 2333221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 275 DMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 275 ~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
.-|++++..|++++..++.....++.--+--.++..+...+++.+.-+++|++.| ++++|+|+++++.+.++....|
T Consensus 251 --kdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~P-t~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 251 --KDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWP-TIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred --cceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCC-hHHHhhceeeeehhHHHHHHHH
Confidence 2234567779999999999888777666667788899999999999999999988 9999999999999999888766
Q ss_pred cCC
Q psy12699 355 FKP 357 (1269)
Q Consensus 355 ~~~ 357 (1269)
...
T Consensus 328 wa~ 330 (346)
T KOG4510|consen 328 WAG 330 (346)
T ss_pred Hhc
Confidence 543
No 137
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.60 E-value=5.8e-14 Score=157.94 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH-hhccc-----ccCCCChhh-hHhhhhhH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGK-KLRFI-----QFPNYHRNI-FFELMPLP 135 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~-~~~~~-----~~~~~~~~~-~~~~~~~~ 135 (1269)
..++++++|+..+. +.|.+ . +++ |..++++|++++.+++.+.. ..++. +.+..+++. +..+...+
T Consensus 6 ~~i~a~~~wg~~~~----~~k~~-~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 6 VSLLASFLFGYMYY----YSKLL-K--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred HHHHHHHHHHHHHH----HHHHh-c--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 34444455555444 77873 3 356 55678888887776654322 22211 111111221 22345566
Q ss_pred HHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHH
Q psy12699 136 FIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLL 215 (1269)
Q Consensus 136 l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~ 215 (1269)
++.+++..++++|+++++++.++++.++.|+|+++++++++|||+++++|++++++++|++++..++.+.. .++++
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~ 153 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALV 153 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999987754322221 46788
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q psy12699 216 NNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS 295 (1269)
Q Consensus 216 s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~ 295 (1269)
+++++|+|.+..|+.- + . +......+ .+...+...+.... .++... ........|..+++.|+++.+..++
T Consensus 154 aa~~~a~~~i~~~~~~-~-~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~g~~t~i~~~l 224 (256)
T TIGR00688 154 LAFSFTAYGLIRKALK-N-T--DLAGFCLE-TLSLMPVAIYYLLQ-TDFATV---QQTNPFPIWLLLVLAGLITGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHhhcC-C-C--CcchHHHH-HHHHHHHHHHHHHH-hccCcc---cccCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999833 2 1 22222221 12222222221111 111110 0001112345566666766665666
Q ss_pred HHHhhhccCccchhhhhhhHHHHHHHHHhhc
Q psy12699 296 IMLCTQYNSALTTTIIGCLKNILLTYLGMFI 326 (1269)
Q Consensus 296 ~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~ 326 (1269)
.++++++.++...+++.+++|++++++|+++
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999864
No 138
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.57 E-value=1.2e-14 Score=167.76 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=129.6
Q ss_pred HHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHHHhh
Q psy12699 593 ISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVF 672 (1269)
Q Consensus 593 ~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i~~ 672 (1269)
....+.|.++|++++++||++++. |++|++++++|++++++.+.++++.+..+.++++++..+.++|++++++.++.+
T Consensus 4 ~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 4 GLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999986 666777999999999999988877777777788899999999999999999999
Q ss_pred hhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCcceehhh
Q psy12699 673 GLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPVDLHVVL 738 (1269)
Q Consensus 673 ~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f~~~~~l 738 (1269)
+|.|+++.+++++|++|+++|++++++++++++++++++.++++++ ++|+++.+.+|.++++.+.+
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~ 148 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFL 148 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHH
Confidence 9999999999999999999999999999999999999999999999 69999988888888874433
No 139
>KOG2765|consensus
Probab=99.57 E-value=1.2e-14 Score=159.26 Aligned_cols=227 Identities=17% Similarity=0.132 Sum_probs=179.1
Q ss_pred hHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC----
Q psy12699 128 FFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL---- 203 (1269)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~---- 203 (1269)
.+.-+.++.+.++..+++|.||.|++++..+++.+++-+||++++.+|..||+++.+.+++++.++||++++.++.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3444555666788999999999999999999999999999999999999999999999999999999999998743
Q ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHH
Q psy12699 204 ----GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPK-KDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWF 278 (1269)
Q Consensus 204 ----~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1269)
+-...|.+++++++++||+|.++.|+...++ .+.+--....|..++.++++.|..++.... ..-.++......+
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e~F~lP~~~q~ 317 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEERFELPSSTQF 317 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccCcccCCCCcee
Confidence 3347999999999999999999999988655 366666677788888888887765554321 1111111222222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 279 QIQFILSCCMGF-ILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 279 ~~~ll~~~v~~~-~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
..+++.++++. +--|++.++.-.++|++.++...+...++++.-+++=|. .+++..++|.+.+++|.+..++.....
T Consensus 318 -~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~-~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 318 -SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGK-HPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred -EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHhheecccccc
Confidence 22444444444 445667789999999999999999999999999988677 559999999999999999998766443
No 140
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.54 E-value=3.6e-14 Score=146.37 Aligned_cols=143 Identities=26% Similarity=0.442 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC----CCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc-----c-chHHH
Q psy12699 209 GYVFVLLNNFLTAVNGVYTKKKLDPK----KDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEY-----L-WDMWF 278 (1269)
Q Consensus 209 G~ll~l~s~~~~a~~~v~~k~~l~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~ 278 (1269)
|++++++|+++.|+++++.|+.+++. .+.+++++++|+++.++++++|.+++.|++........ . .+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78999999999999999999988663 68899999999999999999999999887652222111 1 14466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 279 QIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 279 ~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
+..++.+|+++++.|++.+++++++||+++++++.+|.++++++|+++|||+ ++..+++|+++.++|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~-~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP-ITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc-CCHHHHHHHHHHHHHHheeeC
Confidence 7789999999999999999999999999999999999999999999999996 599999999999999999975
No 141
>KOG2234|consensus
Probab=99.54 E-value=5.5e-13 Score=147.63 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHhhc----ccccCCC------ChhhhHhhh
Q psy12699 65 ISTALFYALCSLFITIVNKSVLTSYV--FPSFKIVALGQLLTTVVVLYVGKKLR----FIQFPNY------HRNIFFELM 132 (1269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~nK~~l~~~~--f~~~~~l~~~q~~~~~lll~~~~~~~----~~~~~~~------~~~~~~~~~ 132 (1269)
.+..+.--+...++.+..++.-+..+ |.+...+...+.+-..+++.+..+.. ....+.+ .++...++.
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~ 96 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS 96 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence 34445555667777778888776543 44444444444433333332222111 1111111 222344566
Q ss_pred hhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC----------
Q psy12699 133 PLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND---------- 202 (1269)
Q Consensus 133 ~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~---------- 202 (1269)
..++++++..++.+.++.+++++++++...+..+.|+++..+++++|.++++|.++++.++|+.+.-.+.
T Consensus 97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~ 176 (345)
T KOG2234|consen 97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSES 176 (345)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCC
Confidence 6688999999999999999999999999999999999999999999999999999999999999886321
Q ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HhhcccchHHHH
Q psy12699 203 -LGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKV--LEYEYLWDMWFQ 279 (1269)
Q Consensus 203 -~~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 279 (1269)
....+.|+...+++++++++..++.+++++ ..+.+.|........++.++.+...+..+ +... ..+...++...|
T Consensus 177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK-~s~~s~wi~NiqL~~~g~~f~~l~~~~~d-~~~i~~~gff~G~s~~vw 254 (345)
T KOG2234|consen 177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILK-GSNVSLWIRNIQLYFFGILFNLLTILLQD-GEAINEYGFFYGYSSIVW 254 (345)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHhhcc-ccccccCCccccccHHHH
Confidence 123478999999999999999999999994 44566776666677777777777655543 2222 223445677778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 280 IQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 280 ~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
+.++..++-|.+++ +++|+.+...-.....+..+++.+.|+++||-.+ |..-.+|+.+++.++.+|...+.+.
T Consensus 255 ~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~-t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 255 LVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQL-TLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHHHhhcCCccc
Confidence 88888887777665 5678888888888889999999999999998866 9999999999999999999555443
No 142
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.54 E-value=1.4e-13 Score=175.12 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=58.5
Q ss_pred eEEEcCCCCHHhHHHHhhhccC--CCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFND--PDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAG 1144 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~--~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~G 1144 (1269)
+..+||.+...+|.+.++..+. ..+...|+|||.++|.|+|++.+.+| .+ +.+.++.+||+|
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mI-Te---------------~aPidSLIQR~G 530 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLI-TE---------------LAPIDSLIQRAG 530 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeee-ec---------------CCCHHHHHHHHH
Confidence 6677888888888887774331 15788999999999999999999776 33 356899999999
Q ss_pred ccCCCC--Ccccc
Q psy12699 1145 RAGRFN--THFEK 1155 (1269)
Q Consensus 1145 RaGR~G--~~g~~ 1155 (1269)
|++|.| .+|.+
T Consensus 531 Rv~R~g~~~~~~~ 543 (733)
T COG1203 531 RVNRHGKKENGKI 543 (733)
T ss_pred HHhhcccccCCce
Confidence 999999 45555
No 143
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.54 E-value=7.8e-13 Score=150.78 Aligned_cols=266 Identities=16% Similarity=0.159 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-HhhcccccCCCC-hhhhHhhhhhHHHHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVG-KKLRFIQFPNYH-RNIFFELMPLPFIYL 139 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 139 (1269)
+..++++++|+..++ ..|.+. ++++++++ +..++.+++.+. ...+. +..+ +..+..-+..|++..
T Consensus 4 l~~lia~~~wGs~g~----~~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~~---~~~~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 4 LIALIPALFWGSFVL----INVKIG---GGPYSQTL---GTTFGALILSIAIAIFVL---PEFWALSIFLVGLLSGAFWA 70 (290)
T ss_pred HHHHHHHHHHhhhHH----HHhccC---CCHHHHHH---HHHHHHHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHH
Confidence 455667777887777 446543 67766543 344444443322 22221 1111 222222333345577
Q ss_pred HHhhhccccccccchhHHHHHHH-hHHHHHHHHHHHHhcccCCcce----ehhhHHHhhhceeeeecCCc-------cc-
Q psy12699 140 GNMVFGLGGTKELSLPMFTMLRR-FSILMTMIAEYYVLHIVPNRSV----KITVGMMIGGAVIAALNDLG-------YN- 206 (1269)
Q Consensus 140 ~~~~~~~~sL~~is~s~~~~i~~-~~Pift~lls~l~~~ek~~~~~----~~~i~l~~~Gv~l~~~~~~~-------~~- 206 (1269)
..+.+++.++++++++.+..+.+ +.++++.+++.++++|+.+.++ +++++++++|+++.+..+.+ .+
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~ 150 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF 150 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence 78899999999999999999988 8888999999999999999999 99999999999988764321 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSC 286 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 286 (1269)
..|++++++|+++|+.|.+..|. . +.+|+..++.+..-..+..+.+.+.... .. .......|..++ .|
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~-~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~-~G 218 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKA-F----GVDGLSVLLPQAIGMVIGGIIFNLGHIL-AK-----PLKKYAILLNIL-PG 218 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-c----CCCcceehhHHHHHHHHHHHHHHHHHhc-cc-----chHHHHHHHHHH-HH
Confidence 68999999999999999999997 3 3678888666655333222222222100 00 011122232333 77
Q ss_pred HHHHHHHHHHHHhhh-ccCccchhhhhhhHHHHHHHHHhhccCcccccccce----eehhhhhhhhhhhhhh
Q psy12699 287 CMGFILNYSIMLCTQ-YNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNF----IGINISIIGSILYTIV 353 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~-~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~----iG~~iil~G~~l~~~~ 353 (1269)
++....+.+.+...+ +.++.+.+++..++++.+++.++++|+|.. +..++ +|+++++.|+.+....
T Consensus 219 i~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~-~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 219 LMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK-TKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC-CcceeehhHHHHHHHHHHHHHHhcc
Confidence 775333444657788 999999999999999999999999999955 99999 9999999999876543
No 144
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=3.3e-13 Score=166.62 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=72.4
Q ss_pred ceEEeccCCCCchHHHH-H---HHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 826 LKIHAGPTNSGKTYHAL-E---RFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l-~---~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
.-++.++||.|||+++. . ..+.+..+.|++|+++||.|.++.+.. +|.+|+.++|+....+....-.+||++
T Consensus 97 G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y~~dI~Y 176 (908)
T PRK13107 97 NRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAYNADITY 176 (908)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcCCCCeEE
Confidence 44778889999998872 2 224477899999999999999987754 688999888876553333334799999
Q ss_pred Eccccc--cC-------------CCCeeEEEEecccccc
Q psy12699 898 CTVEMT--SV-------------NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 898 ~T~e~~--~~-------------l~~~~~lViDEah~~~ 921 (1269)
+|+.-+ +. .+.+.++||||+|.++
T Consensus 177 gT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 177 GTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred eCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 997633 11 3678999999999874
No 145
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.52 E-value=2e-13 Score=150.34 Aligned_cols=212 Identities=18% Similarity=0.263 Sum_probs=171.0
Q ss_pred hhhhHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCc
Q psy12699 125 RNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLG 204 (1269)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~ 204 (1269)
++...++...++++++...+.+.++++++++++++++++..++|++++++++|+|++.++|+++++.++|+++...++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34456667778999999999999999999999999999999999999999999999999999999999999998653211
Q ss_pred -----------------cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy12699 205 -----------------YNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKV 267 (1269)
Q Consensus 205 -----------------~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1269)
....|+++.++++++.|+..++.++++++ .+.+.+.......+++.++.++...+. ++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~-~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~ 171 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKR-SNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI 171 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 13689999999999999999999999954 456777777777888888877765443 22222
Q ss_pred Hh--hcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhh
Q psy12699 268 LE--YEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINIS 343 (1269)
Q Consensus 268 ~~--~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~ii 343 (1269)
.+ +...++...|..++..++.|.+.. +++|+.+...-.....+..+++.++++++||.++ +....+|.+++
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~-s~~f~lg~~~V 244 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPP-SLSFLLGAALV 244 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHhhheecC
Confidence 22 223445566666666666665544 5789999999999999999999999999999955 99888887653
No 146
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.45 E-value=6.2e-12 Score=131.18 Aligned_cols=254 Identities=13% Similarity=0.008 Sum_probs=193.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccchhHHHHH
Q psy12699 81 VNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTML 160 (1269)
Q Consensus 81 ~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i 160 (1269)
+.|.++-..| +.-+++.|..++.+++....+-.+ ++++++++..+...|+.....+.++|.|++.+|.+.+..+
T Consensus 30 ~Ak~LFP~vG---~~g~t~lRl~~aaLIll~l~RPwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAi 103 (292)
T COG5006 30 FAKSLFPLVG---AAGVTALRLAIAALILLALFRPWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAI 103 (292)
T ss_pred HHHHHccccC---hhhHHHHHHHHHHHHHHHHhhHHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 6677765433 555788888777776655443222 4557788888999999988888899999999999999999
Q ss_pred HHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC---CccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy12699 161 RRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND---LGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDM 237 (1269)
Q Consensus 161 ~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~---~~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~ 237 (1269)
-++.|+.+.+++. ++. +..+.+.+.+.|..+..-.. .+.+..|..+++.+..||+.|.+..+|.- + ..
T Consensus 104 EF~GPL~vA~~~s----Rr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g-~--~~ 174 (292)
T COG5006 104 EFTGPLAVALLSS----RRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAG-R--AE 174 (292)
T ss_pred hhccHHHHHHHhc----cch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhc-c--cC
Confidence 9999999888763 333 34556667777776654332 46678999999999999999999999943 2 23
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-HHHhhhccCccchhhhhhhHH
Q psy12699 238 GKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYS-IMLCTQYNSALTTTIIGCLKN 316 (1269)
Q Consensus 238 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~-~~~~i~~~s~~t~sv~~~lk~ 316 (1269)
+.-.-+.+-...+.++.+|+.....+ +..+++..+..-+..++++..+-|+ ...++++.++-++++...++|
T Consensus 175 ~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLeP 247 (292)
T COG5006 175 HGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEP 247 (292)
T ss_pred CCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhH
Confidence 44555666666777777776653321 1123444455566778888888887 777999999999999999999
Q ss_pred HHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 317 ILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 317 v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
.++.+.|++++||.. |..||+|++.++.+..-.++.-+|+
T Consensus 248 a~aAl~G~i~L~e~l-s~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 248 ALAALSGLIFLGETL-TLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhccccccCCC
Confidence 999999999999955 9999999999999988766655443
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.45 E-value=1.1e-13 Score=125.11 Aligned_cols=75 Identities=36% Similarity=0.605 Sum_probs=70.7
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhH
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSA 1138 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~ 1138 (1269)
|...|+++..+||++++++|+.+++.|+ ++..+|||||+++++|+|+ ++++||+++. |.+..+
T Consensus 3 L~~~~~~~~~i~~~~~~~~r~~~~~~f~--~~~~~vli~t~~~~~Gid~~~~~~vi~~~~--------------~~~~~~ 66 (78)
T PF00271_consen 3 LEKKGIKVAIIHGDMSQKERQEILKKFN--SGEIRVLIATDILGEGIDLPDASHVIFYDP--------------PWSPEE 66 (78)
T ss_dssp HHHTTSSEEEESTTSHHHHHHHHHHHHH--TTSSSEEEESCGGTTSSTSTTESEEEESSS--------------ESSHHH
T ss_pred hHHCCCcEEEEECCCCHHHHHHHHHHhh--ccCceEEEeecccccccccccccccccccc--------------CCCHHH
Confidence 3456888999999999999999999999 8889999999999999999 9999999998 889999
Q ss_pred HHHHhcccCCCC
Q psy12699 1139 ALQIAGRAGRFN 1150 (1269)
Q Consensus 1139 y~QR~GRaGR~G 1150 (1269)
|.|++||+||.|
T Consensus 67 ~~Q~~GR~~R~g 78 (78)
T PF00271_consen 67 YIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSTTT
T ss_pred HHHHhhcCCCCC
Confidence 999999999976
No 148
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=5e-12 Score=156.45 Aligned_cols=102 Identities=17% Similarity=0.073 Sum_probs=79.5
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~ 891 (1269)
++..++++++.++||+|||++|...+ +.+..+++++|||+||.|+++.+.. +|.+++.++|+....++.+..
T Consensus 103 ~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y 182 (970)
T PRK12899 103 AIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY 182 (970)
T ss_pred hhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc
Confidence 35778999999999999999994332 2456689999999999999988865 466788888887665554444
Q ss_pred CCCEEEEccccc--cC--------------CCCeeEEEEecccccc
Q psy12699 892 PANHVACTVEMT--SV--------------NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 892 ~~~Ivv~T~e~~--~~--------------l~~~~~lViDEah~~~ 921 (1269)
.++|+||||..+ +. .+.+.++||||||.|+
T Consensus 183 ~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 183 QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 799999998844 21 2356899999999884
No 149
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.42 E-value=1.3e-11 Score=133.07 Aligned_cols=278 Identities=12% Similarity=0.116 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhc--ccccCC--CChhhhHhhhhhHHHH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLR--FIQFPN--YHRNIFFELMPLPFIY 138 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~~ 138 (1269)
++++..+.-++.+..+-++.|.+- +.|.. -+...|.+.++.++.+..... ...... .+++.+..+...+++.
T Consensus 7 ~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~-eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 7 KGILLALLAYLLWGLLPLYFKLLE---PLPAT-EILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHc---cCCHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344444555555555556778764 34533 466677766666554332211 111111 1222333445556677
Q ss_pred HHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCccchHHHHHHHHHHH
Q psy12699 139 LGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNF 218 (1269)
Q Consensus 139 ~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~~~~~G~ll~l~s~~ 218 (1269)
+++...+.+|.+.-.+-.+++=.+..|++.++++.+|+|||+++.+|+++++..+||..-.+...++++..+.+ ++
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~ 158 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----AL 158 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HH
Confidence 88999999999998898999999999999999999999999999999999999999999988888888765544 56
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy12699 219 LTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIML 298 (1269)
Q Consensus 219 ~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~ 298 (1269)
.+++|..+-|+ + +.++.+-...-+++..+.++...+..++... +....+...+.+++++|+.+.+--.+...
T Consensus 159 sf~~Ygl~RK~-~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~---~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 159 SFGLYGLLRKK-L----KVDALTGLTLETLLLLPVALIYLLFLADSGQ---FLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHh-c----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch---hhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 78889866555 4 5777888888777777777777666654333 11112333455677777776665555556
Q ss_pred hhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhccCC
Q psy12699 299 CTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTFKP 357 (1269)
Q Consensus 299 ~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~~~ 357 (1269)
+-++.+=.+.++.++++|....++|+++||| +++..++++.+++-.|..+|.+...++
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E-~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGE-PFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999 569999999999999999998776543
No 150
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.41 E-value=1.5e-12 Score=160.37 Aligned_cols=318 Identities=15% Similarity=0.130 Sum_probs=170.6
Q ss_pred CceEEeccCCCCchHHHHHHHh----cCCcEEEEcchHHHHHHHHHHHh-ccCCCceeeecceeeeccC------CCCCC
Q psy12699 825 PLKIHAGPTNSGKTYHALERFL----SAESGVYCGPLKMLATEVFKKSN-DRGTPCDLITGEEKKFIQG------EEKPA 893 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~----~~~~~lil~Ptr~La~Qi~~~l~-~~g~~v~~~~G~~~~~~~~------~~~~~ 893 (1269)
+..++.+.||||||.+|++.+. +|+++|+++|-..|..|+.++++ .+|.++++.+.+-...+.. .....
T Consensus 218 ~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~ 297 (730)
T COG1198 218 APFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA 297 (730)
T ss_pred cceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc
Confidence 5688899999999998855543 48999999999999999999995 4888888877764433322 23478
Q ss_pred CEEEEccc-cccCCCCeeEEEEecccccccCC----chhHHHHHHhccCc-ceEEEEeecCChHHHHHHHHHcCCceE-E
Q psy12699 894 NHVACTVE-MTSVNIPYEVAVIDEIQMMRDIT----RGWAWTRALLGLMA-KEIHVCGEAGAVDLVKAIMMTTNEDVE-V 966 (1269)
Q Consensus 894 ~Ivv~T~e-~~~~l~~~~~lViDEah~~~d~~----rg~~~~~~ll~l~~-~~~~l~~s~~~~~~~~~l~~~~~~~~~-v 966 (1269)
+|+|||.- ++.-+.+++++||||.|.-.-.+ |-.+-..++..-.. .--.+++++++. ++.+.......+. +
T Consensus 298 ~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~ 375 (730)
T COG1198 298 RVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLL 375 (730)
T ss_pred eEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEE
Confidence 99999977 44459999999999999863111 22333333332222 233566777776 4444433221111 2
Q ss_pred EecccCC-----ccccccc--------------cccccC-CcCCC-CEEEEecHHh-HHHHHHHHHhcC-----CceE--
Q psy12699 967 YKYKRLT-----ELQIEDS--------------AVGSLD-NIQPG-DCIVCFSKND-VYTVSRGIESRG-----TEVA-- 1017 (1269)
Q Consensus 967 ~~~~r~~-----~l~~~~~--------------~~~~l~-~~~~g-~~iv~~s~~~-~~~l~~~L~~~~-----~~~~-- 1017 (1269)
.-..|.. .....+. .++.++ .+..| +.++|.+|+. .-.+ ...+.| ..|.
T Consensus 376 ~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l--~C~~Cg~v~~Cp~Cd~~ 453 (730)
T COG1198 376 RLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLL--LCRDCGYIAECPNCDSP 453 (730)
T ss_pred EccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCcccee--ecccCCCcccCCCCCcc
Confidence 2112211 1111000 000010 11222 4444442221 0000 000000 0111
Q ss_pred -EEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccc------cCCceeEEEcCCCCHHh--HHHHhhhccC
Q psy12699 1018 -VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIE------SRGTEVAVIYGSLPPTT--KLAQASKFND 1088 (1269)
Q Consensus 1018 -~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~------~~gi~v~~~Hg~l~~~e--R~~v~~~F~~ 1088 (1269)
..|.. ...-+-...-.-......|+.--.+.....|.-..+++ --+.++..+-++..... -+..++.|.
T Consensus 454 lt~H~~-~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~- 531 (730)
T COG1198 454 LTLHKA-TGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA- 531 (730)
T ss_pred eEEecC-CCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh-
Confidence 11100 00000000000001111121111111111111111111 11345777766666543 456678899
Q ss_pred CCCCeeEEEEcCcccccccc-CceEEEEcCCC----CCCcccCCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1089 PDNPCKVMVATDAIGMGLNL-SIRRVIFYSLI----KPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1089 ~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~----k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
+|+.+|||.|..++.|.|+ ++..|...+.. .+||++ + -....-+.|-+|||||.+++|.+
T Consensus 532 -~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA-~-----Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 532 -NGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA-S-----ERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred -CCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch-H-----HHHHHHHHHHHhhhccCCCCCeE
Confidence 9999999999999999999 99988654431 222332 1 13467789999999999999988
No 151
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.40 E-value=8.6e-13 Score=143.00 Aligned_cols=138 Identities=18% Similarity=0.048 Sum_probs=100.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h-----cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L-----SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~-----~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~ 887 (1269)
+.+|+|+++++|||+|||++++..+ . .+++++|++|+++|+.|+.+.++++ +.++...+|+....+.
T Consensus 33 ~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (203)
T cd00268 33 LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ 112 (203)
T ss_pred HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH
Confidence 3568899999999999998763322 2 2458999999999999999888765 4456667776443222
Q ss_pred CC--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH
Q psy12699 888 GE--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 888 ~~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
.. ..+++|+|+|++.+. .+.+++++|+||+|++.+.+++......+..+......+..+++..+....+.
T Consensus 113 ~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 113 IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHH
Confidence 11 126899999987332 26789999999999998777777777777777666666777777776666655
Q ss_pred H
Q psy12699 958 M 958 (1269)
Q Consensus 958 ~ 958 (1269)
.
T Consensus 193 ~ 193 (203)
T cd00268 193 R 193 (203)
T ss_pred H
Confidence 3
No 152
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.38 E-value=2.6e-12 Score=156.37 Aligned_cols=253 Identities=16% Similarity=0.191 Sum_probs=155.4
Q ss_pred CCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHH-HHHH---hcCCcEEEEcchHHHHHHHHHHHhccCCCc
Q psy12699 800 GPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHA-LERF---LSAESGVYCGPLKMLATEVFKKSNDRGTPC 875 (1269)
Q Consensus 800 g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~-l~~l---~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v 875 (1269)
-|+|..|+|+ +-++.|+++-+.||||.|||.-. +.++ .+++++++++||+.|+.|+++++++++...
T Consensus 82 ~~ws~QR~Wa---------kR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 82 RPWSAQRVWA---------KRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CchHHHHHHH---------HHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4677777773 34588999999999999998544 2222 347899999999999999999998765422
Q ss_pred e-----e-eecceeeec------cCCCCCCCEEEEcccccc----CCC--CeeEEEEecccccccCCchhHHHHHHhccC
Q psy12699 876 D-----L-ITGEEKKFI------QGEEKPANHVACTVEMTS----VNI--PYEVAVIDEIQMMRDITRGWAWTRALLGLM 937 (1269)
Q Consensus 876 ~-----~-~~G~~~~~~------~~~~~~~~Ivv~T~e~~~----~l~--~~~~lViDEah~~~d~~rg~~~~~~ll~l~ 937 (1269)
+ + .++..+..+ +-++.+.||+|+|.+.+. .+. +++++++|.+|-++..++..+--..++|++
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~ 232 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFS 232 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCC
Confidence 2 2 222211111 114457999999977554 244 799999999998754442221111111111
Q ss_pred c------------------------------------------ceEEEEeecCCh------HHHHHHHHHc-CCceEEEe
Q psy12699 938 A------------------------------------------KEIHVCGEAGAV------DLVKAIMMTT-NEDVEVYK 968 (1269)
Q Consensus 938 ~------------------------------------------~~~~l~~s~~~~------~~~~~l~~~~-~~~~~v~~ 968 (1269)
. .-+++.++++.. ..++.+.... |.. ..
T Consensus 233 eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~---~~ 309 (1187)
T COG1110 233 EEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSG---GE 309 (1187)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCcc---ch
Confidence 1 123444444332 2334443221 110 00
Q ss_pred cccCCcc-----ccccccccccCCcCCCCEEEEe---cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCC
Q psy12699 969 YKRLTEL-----QIEDSAVGSLDNIQPGDCIVCF---SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDN 1040 (1269)
Q Consensus 969 ~~r~~~l-----~~~~~~~~~l~~~~~g~~iv~~---s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~ 1040 (1269)
+-|.+.. .......+.++.+..|..|+.. +++.++++++.|++.|.++..+
T Consensus 310 ~LRNIvD~y~~~~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~--------------------- 368 (1187)
T COG1110 310 GLRNIVDIYVESESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELI--------------------- 368 (1187)
T ss_pred hhhheeeeeccCccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEe---------------------
Confidence 1111100 1122233345556666655444 4778888888888877765443
Q ss_pred CccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcC----cccccccc--CceEEE
Q psy12699 1041 PCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATD----AIGMGLNL--SIRRVI 1114 (1269)
Q Consensus 1041 ~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTd----v~~~GIDi--~v~~VI 1114 (1269)
|+ ..++.++.|. .|++++||... ++-||||+ -++++|
T Consensus 369 ------------------------------~a-----~~~~~le~F~--~GeidvLVGvAsyYG~lVRGlDLP~rirYaI 411 (1187)
T COG1110 369 ------------------------------HA-----EKEEALEDFE--EGEVDVLVGVASYYGVLVRGLDLPHRIRYAV 411 (1187)
T ss_pred ------------------------------ec-----cchhhhhhhc--cCceeEEEEecccccceeecCCchhheeEEE
Confidence 33 1133448899 99999999875 89999999 899999
Q ss_pred EcCCCCCC
Q psy12699 1115 FYSLIKPS 1122 (1269)
Q Consensus 1115 ~~~~~k~~ 1122 (1269)
++|.+|+.
T Consensus 412 F~GvPk~r 419 (1187)
T COG1110 412 FYGVPKFR 419 (1187)
T ss_pred EecCCcee
Confidence 99998665
No 153
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.37 E-value=7.8e-12 Score=160.16 Aligned_cols=80 Identities=29% Similarity=0.354 Sum_probs=72.2
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCC-CCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDP-DNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~-~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
..|++...+||+++.++|+.+++.|+.+ .+..-+|++|.+++.|||+ .+++||+||. |.++...
T Consensus 509 ~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~--------------dWNP~~d 574 (1033)
T PLN03142 509 YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDS--------------DWNPQVD 574 (1033)
T ss_pred HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCC--------------CCChHHH
Confidence 4688899999999999999999999832 3456789999999999999 9999999998 7889999
Q ss_pred HHHhcccCCCCCcccc
Q psy12699 1140 LQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~ 1155 (1269)
.|++||+-|.|++..+
T Consensus 575 ~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 575 LQAQDRAHRIGQKKEV 590 (1033)
T ss_pred HHHHHHhhhcCCCceE
Confidence 9999999999998766
No 154
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.37 E-value=7.8e-13 Score=138.71 Aligned_cols=135 Identities=21% Similarity=0.123 Sum_probs=93.8
Q ss_pred cccCCceEEeccCCCCchHHHHH----HHhcC--CcEEEEcchHHHHHHHHHHHhccCC----Cceeeecceeee-ccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALE----RFLSA--ESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKF-IQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~----~l~~~--~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~-~~~- 888 (1269)
+.+|+++++.+|||+|||.+++. .+.++ .++++++|+++|+.|+++++.+++. ++..++|+.... +..
T Consensus 11 i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (169)
T PF00270_consen 11 IISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQRE 90 (169)
T ss_dssp HHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHH
T ss_pred HHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccc
Confidence 45789999999999999998833 23333 4899999999999999999977543 566677765422 111
Q ss_pred -CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCc--ceEEEEeecCChHHHHH
Q psy12699 889 -EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA--KEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~--~~~~l~~s~~~~~~~~~ 955 (1269)
...+++|+|+||+.+. .+.+++++|+||+|++.+..++..+..++..+.. ....++.++++.+.+++
T Consensus 91 ~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 91 VLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp HHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHH
T ss_pred cccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhh
Confidence 1236999999988433 2456999999999999776666666666554421 23344555555565554
No 155
>KOG0951|consensus
Probab=99.30 E-value=1.6e-11 Score=150.98 Aligned_cols=318 Identities=16% Similarity=0.166 Sum_probs=202.4
Q ss_pred CCceEEeccCCCCchHHHHHHHhc---CCcEEEEcchHHHHHHHHHHHhc-----cCCCceeeecceeeeccCCCCCCCE
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS---AESGVYCGPLKMLATEVFKKSND-----RGTPCDLITGEEKKFIQGEEKPANH 895 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~---~~~~lil~Ptr~La~Qi~~~l~~-----~g~~v~~~~G~~~~~~~~~~~~~~I 895 (1269)
++++++.+|+|||||.++..+++. ..+++|++|.-+.+..+++.+.. .|..+..++|+... +.......++
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~-~lkl~~~~~v 1237 (1674)
T KOG0951|consen 1159 NDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSL-DLKLLQKGQV 1237 (1674)
T ss_pred cceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcccc-chHHhhhcce
Confidence 578999999999999999766665 57899999999999999887743 34456667776543 2222336899
Q ss_pred EEEccccccC---CCCeeEEEEecccccccCCchhHHHHHHh-----ccCcceEEEEeecCChHHHHHHHHH-cCCceEE
Q psy12699 896 VACTVEMTSV---NIPYEVAVIDEIQMMRDITRGWAWTRALL-----GLMAKEIHVCGEAGAVDLVKAIMMT-TNEDVEV 966 (1269)
Q Consensus 896 vv~T~e~~~~---l~~~~~lViDEah~~~d~~rg~~~~~~ll-----~l~~~~~~l~~s~~~~~~~~~l~~~-~~~~~~v 966 (1269)
+++|||..++ .+.+++.|.||.|++++ ..|..++.+.. .-..+.+.+.+-+....+.+++... ....+.+
T Consensus 1238 ii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~ig~s~~~v~Nf 1316 (1674)
T KOG0951|consen 1238 IISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDLIGASSSGVFNF 1316 (1674)
T ss_pred EEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhhccccccceeec
Confidence 9999996664 66899999999999983 34443322111 0011233333322222233444322 2223345
Q ss_pred EecccCCccccccccccc-----------------cCC--cCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChh
Q psy12699 967 YKYKRLTELQIEDSAVGS-----------------LDN--IQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPT 1026 (1269)
Q Consensus 967 ~~~~r~~~l~~~~~~~~~-----------------l~~--~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~ 1026 (1269)
....|++|+...-+.... +.+ ..+...+||. +++.+..++..+-.... ++ .+.
T Consensus 1317 ~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~------~~-~~~ 1389 (1674)
T KOG0951|consen 1317 SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSH------AD-EPD 1389 (1674)
T ss_pred CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhc------cC-cHH
Confidence 667788887654332211 110 1233566666 78878777766543321 11 111
Q ss_pred hHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccc
Q psy12699 1027 TKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGL 1106 (1269)
Q Consensus 1027 ~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GI 1106 (1269)
-... .......++++-+++|+. |-+|+..++..+...|. .|.+.|+|...- ..|+
T Consensus 1390 ~l~~------------------~~e~~~~~l~e~l~~gvg----~e~~s~~d~~iv~~l~e--~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1390 YLLS------------------ELEECDETLRESLKHGVG----HEGLSSNDQEIVQQLFE--AGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred HHHH------------------HHhcchHhhhhccccccc----ccccCcchHHHHHHHHh--cCcEEEEEEEcc-cccc
Confidence 1111 111233444555667743 99999999999999999 999999998877 8999
Q ss_pred ccCceEEEEcCCCCCCcccCCcc-ccccCCHhHHHHHhcccCCCCCccccccCCCCcccccccchhhhhhhhhHHH
Q psy12699 1107 NLSIRRVIFYSLIKPSLNEKGER-EIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQ 1181 (1269)
Q Consensus 1107 Di~v~~VI~~~~~k~~~~~~G~~-~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~q 1181 (1269)
-...+.||..|...|| |.. ++.+.+.++..|+.|||.|+|+ ..+.-.+|..+.+.+-..+.+-+.+.+|
T Consensus 1445 ~~~~~lVvvmgt~~yd----g~e~~~~~y~i~~ll~m~G~a~~~~k--~vi~~~~~~k~yykkfl~e~lPves~lq 1514 (1674)
T KOG0951|consen 1445 KLKAHLVVVMGTQYYD----GKEHSYEDYPIAELLQMVGLASGAGK--CVIMCHTPKKEYYKKFLYEPLPVESHLQ 1514 (1674)
T ss_pred cccceEEEEecceeec----ccccccccCchhHHHHHhhhhcCCcc--EEEEecCchHHHHHHhccCcCchHHHHH
Confidence 9889999999988887 543 3678999999999999999443 2244445554444333333333444444
No 156
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=2e-10 Score=142.88 Aligned_cols=105 Identities=18% Similarity=0.125 Sum_probs=79.6
Q ss_pred ccchhhhhhhccCccccc-cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEE------
Q psy12699 1042 CKVMVATDAIGMGLNFRG-IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRV------ 1113 (1269)
Q Consensus 1042 ~~~l~~t~~~~~~~~~~~-l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~V------ 1113 (1269)
.+.|+++........+.+ |...|++..++|+ .+.+|+..+..|+ .+...|+||||+|+||+|| ....|
T Consensus 599 rpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~A--G~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 599 QPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEA--GQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhc--CCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 344444444433333333 3457888999997 6889999999999 8899999999999999999 43333
Q ss_pred --EEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1114 --IFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1114 --I~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
|+++. |-|...|.||+|||||.|.+|.++++...+.+
T Consensus 675 ~VIgter--------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 675 FILGSER--------------HESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eeeCCCC--------------CchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 55544 77889999999999999999999777666544
No 157
>KOG2766|consensus
Probab=99.21 E-value=1.4e-11 Score=128.02 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhhhcccccccc
Q psy12699 73 LCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKEL 152 (1269)
Q Consensus 73 ~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~i 152 (1269)
.+..+..+.+.++-.. +.+.|..-++..+..-.++......+++ +.-.-.++..+.++++-.-+.++-..|.+|+
T Consensus 28 L~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----~~~~~~~~hYilla~~DVEaNy~vV~AyQyT 102 (336)
T KOG2766|consen 28 LLITSTAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR----KYIKAKWRHYILLAFVDVEANYFVVKAYQYT 102 (336)
T ss_pred HHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh----HHHHHHHHHhhheeEEeecccEEEeeehhhc
Confidence 3344445566666554 5676754444444333333322222222 1122234456777776666777777899999
Q ss_pred chhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC--------ccchHHHHHHHHHHHHHHHHH
Q psy12699 153 SLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL--------GYNFQGYVFVLLNNFLTAVNG 224 (1269)
Q Consensus 153 s~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~--------~~~~~G~ll~l~s~~~~a~~~ 224 (1269)
+.+..+.+-.-..+.+++++|+|++.|+.+.++.|++++++||++++.+|. +....|.+++++++-+||+.+
T Consensus 103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeecc
Confidence 999999999999999999999999999999999999999999999988652 344789999999999999999
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy12699 225 VYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNS 304 (1269)
Q Consensus 225 v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s 304 (1269)
+..+.+. ++.+..+++....++++++..+- ++.+. ....... ++.....++ ...++-|+..-..-..++..|
T Consensus 183 v~EEflv---kn~d~~elm~~lgLfGaIIsaIQ-~i~~~-~~~~tl~--w~~~i~~yl-~f~L~MFllYsl~pil~k~~~ 254 (336)
T KOG2766|consen 183 VSEEFLV---KNADRVELMGFLGLFGAIISAIQ-FIFER-HHVSTLH--WDSAIFLYL-RFALTMFLLYSLAPILIKTNS 254 (336)
T ss_pred ccHHHHH---hcCcHHHHHHHHHHHHHHHHHHH-Hhhhc-cceeeEe--ehHHHHHHH-HHHHHHHHHHHhhHHheecCC
Confidence 9999866 25788999999999999988886 33332 1221111 222221111 122222222212335789999
Q ss_pred ccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 305 ALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 305 ~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
++.+.+.-.....+++++ ..||-+. ++.-.+..+.+..|.++|.-
T Consensus 255 aT~~nlslLTsDmwsl~i--~~FgYhv-~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 255 ATMFNLSLLTSDMWSLLI--RTFGYHV-DWLYFLAFATIATGLIIYST 299 (336)
T ss_pred ceEEEhhHhHHHHHHHHH--HHHhcch-hhhhHHHHHHHHHhhEEeec
Confidence 999998888899999888 6677755 99999999999999999943
No 158
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.18 E-value=3.1e-10 Score=143.37 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=62.4
Q ss_pred CceEEeccCCCCchHHHHH---HH---hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeee-ccCCCCCCCEEE
Q psy12699 825 PLKIHAGPTNSGKTYHALE---RF---LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKF-IQGEEKPANHVA 897 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~---~l---~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~-~~~~~~~~~Ivv 897 (1269)
+..++..|||||||+++.. .+ ...+++++++|+++|..|+.+.+..++..+....+..... ..-.....+|+|
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~iiv 343 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGIII 343 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEEE
Confidence 5678888888888877621 11 2367899999999999999999988765321111110000 000122468999
Q ss_pred EccccccC-----CCCe------eEEEEecccccc
Q psy12699 898 CTVEMTSV-----NIPY------EVAVIDEIQMMR 921 (1269)
Q Consensus 898 ~T~e~~~~-----l~~~------~~lViDEah~~~ 921 (1269)
+|.+.+.. ...+ .++|+||||+..
T Consensus 344 tTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 344 TTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred EEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 99885541 1111 289999999974
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.17 E-value=4.4e-11 Score=108.75 Aligned_cols=73 Identities=38% Similarity=0.512 Sum_probs=68.0
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
..++.+..+||++++++|..+++.|+ ++..+||++|+++++|+|+ ++++||+++. |.+..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~--------------~~~~~~~~ 72 (82)
T smart00490 9 ELGIKVARLHGGLSQEEREEILEKFN--NGKIKVLVATDVAERGLDLPGVDLVIIYDL--------------PWSPASYI 72 (82)
T ss_pred HCCCeEEEEECCCCHHHHHHHHHHHH--cCCCeEEEECChhhCCcChhcCCEEEEeCC--------------CCCHHHHH
Confidence 34677999999999999999999999 8888999999999999999 8999999998 78899999
Q ss_pred HHhcccCCCC
Q psy12699 1141 QIAGRAGRFN 1150 (1269)
Q Consensus 1141 QR~GRaGR~G 1150 (1269)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999965
No 160
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.15 E-value=1.4e-10 Score=115.85 Aligned_cols=73 Identities=34% Similarity=0.408 Sum_probs=68.5
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..+||+++.++|..+.+.|+ ++..++|++|+.+++|+|+ ++++||+++. |.+..++.|++||
T Consensus 55 ~~~~~~~~~~~~~~~~~~~f~--~~~~~ili~t~~~~~G~d~~~~~~vi~~~~--------------~~~~~~~~Q~~GR 118 (131)
T cd00079 55 VAALHGDGSQEEREEVLKDFR--EGEIVVLVATDVIARGIDLPNVSVVINYDL--------------PWSPSSYLQRIGR 118 (131)
T ss_pred EEEEECCCCHHHHHHHHHHHH--cCCCcEEEEcChhhcCcChhhCCEEEEeCC--------------CCCHHHheecccc
Confidence 788899999999999999999 8889999999999999999 8999999998 7889999999999
Q ss_pred cCCCCCcccc
Q psy12699 1146 AGRFNTHFEK 1155 (1269)
Q Consensus 1146 aGR~G~~g~~ 1155 (1269)
+||.|+.|.+
T Consensus 119 ~~R~~~~~~~ 128 (131)
T cd00079 119 AGRAGQKGTA 128 (131)
T ss_pred cccCCCCceE
Confidence 9999987765
No 161
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=1.4e-09 Score=131.83 Aligned_cols=95 Identities=19% Similarity=0.084 Sum_probs=71.8
Q ss_pred eEEeccCCCCchHHHH-H---HHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 827 KIHAGPTNSGKTYHAL-E---RFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 827 vlv~apTGsGKTl~~l-~---~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
-++.+.||+|||+++. . ..+.|..+-+++|+--||.|-++.+.. +|.++++++++....+.++.-.+||+++
T Consensus 94 ~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~~DItYg 173 (764)
T PRK12326 94 DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYACDVTYA 173 (764)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHcCCCEEc
Confidence 3678999999998882 2 224588999999999999999988754 6889999988765443333448999999
Q ss_pred cccccc---------------CCCCeeEEEEecccccc
Q psy12699 899 TVEMTS---------------VNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 899 T~e~~~---------------~l~~~~~lViDEah~~~ 921 (1269)
|..-+. ..+.+.+.||||+|-++
T Consensus 174 Tn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 174 SVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 943111 15679999999999763
No 162
>KOG1443|consensus
Probab=99.13 E-value=1e-10 Score=125.53 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=124.8
Q ss_pred HHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccc----cCCCCh-hhhhhhchhhHHHHHHH
Q psy12699 596 ALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQ----FPNYHR-NIFFELMPLPFIYLGNM 670 (1269)
Q Consensus 596 ~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~----~~~~~~-~~~~~~~p~~~~~~~~i 670 (1269)
++.|-++|+++.++||+.-.. |++|.+++.+|+++-........+.-... ...++| +..|++.|-+++-.+.|
T Consensus 21 Vl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DI 98 (349)
T KOG1443|consen 21 VLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDI 98 (349)
T ss_pred HHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhccc
Confidence 466778999999999998766 55566699999998888777776542222 246888 88999999999999999
Q ss_pred hhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHHh-hhheeeeccCCCccee----hhhhHhhcC
Q psy12699 671 VFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYIS-FRRYCLETQSLPVDLH----VVLSDIIQG 744 (1269)
Q Consensus 671 ~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~~-~g~~~~~~~d~~f~~~----~~l~~i~~~ 744 (1269)
.++|.||+|+++++|+|.|+.+++|++++..+|.-+++++...+.+++| .|+++-++.+-+||.. ++.+..+.+
T Consensus 99 GLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 99 GLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSG 177 (349)
T ss_pred ccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998888886 9999999999999983 444455444
No 163
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.13 E-value=3.7e-10 Score=136.38 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred hcccccCC-ceEEeccCCCCchHHHH---HHHhc---CCcEEEEcchHHHHHHHHHHHhccC---CCceeeecceeeecc
Q psy12699 818 ESGVYCGP-LKIHAGPTNSGKTYHAL---ERFLS---AESGVYCGPLKMLATEVFKKSNDRG---TPCDLITGEEKKFIQ 887 (1269)
Q Consensus 818 ~~~l~~g~-~vlv~apTGsGKTl~~l---~~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g---~~v~~~~G~~~~~~~ 887 (1269)
.+.+-+|+ ..++++.||+|||..|+ ..+.+ -+|+|+++-+++|..|.+..+..+- ..+..+.+....
T Consensus 178 ~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~--- 254 (875)
T COG4096 178 IEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGD--- 254 (875)
T ss_pred HHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCC---
Confidence 34456665 49999999999998773 33333 6899999999999999998887643 345444443211
Q ss_pred CCCCCCCEEEEccccc-c----------C--CCCeeEEEEeccccc
Q psy12699 888 GEEKPANHVACTVEMT-S----------V--NIPYEVAVIDEIQMM 920 (1269)
Q Consensus 888 ~~~~~~~Ivv~T~e~~-~----------~--l~~~~~lViDEah~~ 920 (1269)
..++|.++|++.+ . . -..+|++||||||+=
T Consensus 255 ---~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg 297 (875)
T COG4096 255 ---TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG 297 (875)
T ss_pred ---cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh
Confidence 1478999996522 1 1 345999999999985
No 164
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.12 E-value=1.8e-10 Score=143.63 Aligned_cols=88 Identities=19% Similarity=0.213 Sum_probs=76.8
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ 1141 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q 1141 (1269)
.|+++..+||++++.+|.++++.|+ +|+++|||||+++++|+|+ ++++||++|..++ | .|.+..+|+|
T Consensus 465 ~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dadif-----G----~p~~~~~~iq 533 (655)
T TIGR00631 465 LGIKVRYLHSEIDTLERVEIIRDLR--LGEFDVLVGINLLREGLDLPEVSLVAILDADKE-----G----FLRSERSLIQ 533 (655)
T ss_pred hccceeeeeCCCCHHHHHHHHHHHh--cCCceEEEEcChhcCCeeeCCCcEEEEeCcccc-----c----CCCCHHHHHH
Confidence 3555788899999999999999999 9999999999999999999 9999999997555 4 3788999999
Q ss_pred HhcccCCCCCccccccCCCCc
Q psy12699 1142 IAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1142 R~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|+|||||. .+|.++.+....
T Consensus 534 riGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 534 TIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred HhcCCCCC-CCCEEEEEEcCC
Confidence 99999998 678887665543
No 165
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.11 E-value=4e-09 Score=121.00 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=88.1
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhH
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSA 1138 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~ 1138 (1269)
+...|+.+.++|++...-||.+++++.| .|.++|||.-|.+-.|+|+ .|..|.+.|..|. |- ..|-.+
T Consensus 466 l~e~gikv~YlHSdidTlER~eIirdLR--~G~~DvLVGINLLREGLDiPEVsLVAIlDADKe-----GF----LRse~S 534 (663)
T COG0556 466 LKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLLREGLDLPEVSLVAILDADKE-----GF----LRSERS 534 (663)
T ss_pred HHhcCceEEeeeccchHHHHHHHHHHHh--cCCccEEEeehhhhccCCCcceeEEEEeecCcc-----cc----ccccch
Confidence 3456888999999999999999999999 9999999999999999999 9999999998664 42 567889
Q ss_pred HHHHhcccCCCCCccccccCCCCcccccccchhhhhhhhhHHHhhccC
Q psy12699 1139 ALQIAGRAGRFNTHFEKLAGSHPALNEKGEREIDLISVSAALQIAGRA 1186 (1269)
Q Consensus 1139 y~QR~GRaGR~G~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~qia~~~ 1186 (1269)
.+|-+|||+|. -+|.++.+-.-.-+.+ +..++.-......|++.+.
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~iT~sM-~~Ai~ET~RRR~iQ~~yN~ 580 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKITDSM-QKAIDETERRREIQMAYNE 580 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999994 4566665543222211 2244444566667777643
No 166
>KOG0921|consensus
Probab=99.10 E-value=2.3e-10 Score=136.75 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=65.9
Q ss_pred eeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCc--cccccCCHhHH
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGE--REIDLISVSAA 1139 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~--~~~~p~s~~~y 1139 (1269)
++...|+.++..++. +.|+ .|.|..++++.|++++..+++ ++.+||+.+..+.. +-. +.. ....+.|.-+.
T Consensus 676 ~ilp~Hsq~~~~eqr---kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~ 752 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQR---KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNL 752 (1282)
T ss_pred ccccchhhcccHhhh---hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccch
Confidence 578889999999888 5566 558999999999999999999 99999999876654 222 111 12568889999
Q ss_pred HHHhcccCCCCC
Q psy12699 1140 LQIAGRAGRFNT 1151 (1269)
Q Consensus 1140 ~QR~GRaGR~G~ 1151 (1269)
.||.||+||...
T Consensus 753 eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 753 EQRKGRAGRVRP 764 (1282)
T ss_pred HhhcccCceecc
Confidence 999999999543
No 167
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.06 E-value=8.1e-10 Score=127.32 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=114.1
Q ss_pred HHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHHHhhhh
Q psy12699 595 TALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGL 674 (1269)
Q Consensus 595 ~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~ 674 (1269)
++..|+.+..-.++.+|..-..++.+++.+++++|++++++...+...... .++.+....++++++++++.++.+++|
T Consensus 5 ~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 5 VAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 455666565655666665555566669999999999999888877665433 345566789999999999999999999
Q ss_pred hcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCc
Q psy12699 675 GGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPV 732 (1269)
Q Consensus 675 ~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f 732 (1269)
.||+|+|+|+++++|++.|+.++++++++++|++++.-++++++ ++|+++.+.+|..-
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 99999999999999999999999999999999999999999998 59999999888643
No 168
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.06 E-value=4.7e-10 Score=141.16 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=76.5
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
..|+++..+||++++.+|..+++.|+ +|+++|+|||+++++|+|+ ++++||+++...+ | .|.+..+|+
T Consensus 468 ~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eif-----G----~~~~~~~yi 536 (652)
T PRK05298 468 ELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLLREGLDIPEVSLVAILDADKE-----G----FLRSERSLI 536 (652)
T ss_pred hcceeEEEEECCCCHHHHHHHHHHHH--cCCceEEEEeCHHhCCccccCCcEEEEeCCccc-----c----cCCCHHHHH
Confidence 44666888999999999999999999 8999999999999999999 9999999998655 3 267899999
Q ss_pred HHhcccCCCCCccccccCCC
Q psy12699 1141 QIAGRAGRFNTHFEKLAGSH 1160 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~~~~~~ 1160 (1269)
||+|||||. ++|.++.+..
T Consensus 537 qr~GR~gR~-~~G~~i~~~~ 555 (652)
T PRK05298 537 QTIGRAARN-VNGKVILYAD 555 (652)
T ss_pred HHhccccCC-CCCEEEEEec
Confidence 999999996 7888866654
No 169
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=4.5e-09 Score=130.74 Aligned_cols=100 Identities=20% Similarity=0.060 Sum_probs=75.4
Q ss_pred CceEEeccCCCCchHHHH-H---HHhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEE
Q psy12699 825 PLKIHAGPTNSGKTYHAL-E---RFLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l-~---~l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+--++.+.||+|||+++. . ..+.|..+.+++|+--||.|-++.+.. +|.+|++++++....+.++.-.++|+
T Consensus 96 ~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~ 175 (913)
T PRK13103 96 EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADIT 175 (913)
T ss_pred cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEE
Confidence 345778899999998872 2 234589999999999999999988764 68899999887655444444479999
Q ss_pred EEccccc-----c----------CCCCeeEEEEeccccc-ccCC
Q psy12699 897 ACTVEMT-----S----------VNIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 897 v~T~e~~-----~----------~l~~~~~lViDEah~~-~d~~ 924 (1269)
++|...+ . ..+++.++||||+|.+ .|+.
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 9995532 1 1478999999999987 3443
No 170
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.92 E-value=1.4e-09 Score=119.59 Aligned_cols=188 Identities=20% Similarity=0.252 Sum_probs=132.1
Q ss_pred cchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC---------------------------c
Q psy12699 152 LSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL---------------------------G 204 (1269)
Q Consensus 152 is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~---------------------------~ 204 (1269)
+++|.....++..++++++..+.+.+++++..+++++++++.|++....++. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5788899999999999999999999999999999999999999875322211 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh----hhH--HHHhhcccchHHH
Q psy12699 205 YNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSD----DYA--KVLEYEYLWDMWF 278 (1269)
Q Consensus 205 ~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~ 278 (1269)
..+.|....+.++++.++..+++++..+. ++.. +|...+...+..++..... +.. ..+.+...++...
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKD-GDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV 155 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccC-CCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH
Confidence 34678888888999999999999996532 2222 4433333333222211111 111 1111111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhh
Q psy12699 279 QIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILY 350 (1269)
Q Consensus 279 ~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~ 350 (1269)
|..++. ....+++..+++++.++.+.+++..++++++.++|+++||++ ++..+++|+.+++.|+++|
T Consensus 156 ~~~~~~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~-ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 156 WIVGLL----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK-ISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHH----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHeeeEeC
Confidence 333333 333445577899999999999999999999999999999995 5999999999999998876
No 171
>KOG4150|consensus
Probab=98.92 E-value=9.2e-10 Score=125.47 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=67.8
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..|.||.+.++|.+++...- .|+.+-+|||++++-|||| ..|-|+..|. |.|.+++.|..||
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F--~G~L~giIaTNALELGIDIG~LDAVl~~GF--------------P~S~aNl~QQ~GR 623 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLF--GGKLCGIIATNALELGIDIGHLDAVLHLGF--------------PGSIANLWQQAGR 623 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhh--CCeeeEEEecchhhhccccccceeEEEccC--------------chhHHHHHHHhcc
Confidence 556789999999999999877 7999999999999999999 9999999998 9999999999999
Q ss_pred cCCCCCcccc
Q psy12699 1146 AGRFNTHFEK 1155 (1269)
Q Consensus 1146 aGR~G~~g~~ 1155 (1269)
|||..+..-+
T Consensus 624 AGRRNk~SLa 633 (1034)
T KOG4150|consen 624 AGRRNKPSLA 633 (1034)
T ss_pred ccccCCCceE
Confidence 9999888655
No 172
>KOG4314|consensus
Probab=98.91 E-value=2.4e-09 Score=107.17 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=161.4
Q ss_pred hHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC--Ccc
Q psy12699 128 FFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND--LGY 205 (1269)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~--~~~ 205 (1269)
++...|++++.++..+.+..+|+.++++.++.+..+.-.|+.+++++.++.++...++++.++.+.|++++++.| ...
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 446778888899999999999999999999999999999999999999999999999999999999999999755 456
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHH----HH-HHHHhhhhHHHHhhcccchHHHHH
Q psy12699 206 NFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVT----VI-FIYLSDDYAKVLEYEYLWDMWFQI 280 (1269)
Q Consensus 206 ~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (1269)
.+.|+..++.|++..|+|-++.|+.++.. +--+...+++.++++-+ +| +.+.+... +-|+ ......|.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnA---n~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V-E~~q---sFA~~PWG 205 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNA---NFGDAAHFMSCLGFFNLCFISFPALILAFTGV-EHLQ---SFAAAPWG 205 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHHhhhHHHHHHhch-HHHH---HHhhCCch
Confidence 78999999999999999999999988432 22333333333332221 11 11111111 1111 01112244
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 281 QFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 281 ~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
.+...+.+....|+.....+..+.|...|+-..........+..++ +|..++..-+.|..++.+|.++....+.
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~-q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILF-QELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 5555666666777777777888888888876655555555555544 6656688889999999999998776543
No 173
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.91 E-value=3.3e-09 Score=106.72 Aligned_cols=100 Identities=20% Similarity=0.143 Sum_probs=65.8
Q ss_pred ceEEeccCCCCchHHHHHH---Hh---cCCcEEEEcchHHHHHHHHHHHhccC---CCceeeecceeeeccC--CCCCCC
Q psy12699 826 LKIHAGPTNSGKTYHALER---FL---SAESGVYCGPLKMLATEVFKKSNDRG---TPCDLITGEEKKFIQG--EEKPAN 894 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~~---l~---~~~~~lil~Ptr~La~Qi~~~l~~~g---~~v~~~~G~~~~~~~~--~~~~~~ 894 (1269)
++++.+|||+|||..++.. .. ..+++++++|++.++.|..+++.... .++....++....... .....+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKTD 81 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCCC
Confidence 3455555555555444211 11 35899999999999999998886543 5566666654332211 134789
Q ss_pred EEEEcccccc--------CCCCeeEEEEecccccccCCc
Q psy12699 895 HVACTVEMTS--------VNIPYEVAVIDEIQMMRDITR 925 (1269)
Q Consensus 895 Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~r 925 (1269)
++++|++.+. ...+++++|+||+|.+.+...
T Consensus 82 i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 82 IVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred EEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch
Confidence 9999988443 144899999999999966543
No 174
>KOG0385|consensus
Probab=98.90 E-value=2.2e-08 Score=119.06 Aligned_cols=81 Identities=27% Similarity=0.347 Sum_probs=68.2
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
-+|+...-+.|+++.++|...++.|+ +++.+.=.|++|-+.+-|||+ .+|.||.||. ..++..=
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDS--------------DWNPQ~D 574 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDS--------------DWNPQVD 574 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecC--------------CCCchhh
Confidence 45677888899999999999999999 434567789999999999999 9999999996 3445566
Q ss_pred HHHhcccCCCCCccccc
Q psy12699 1140 LQIAGRAGRFNTHFEKL 1156 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~~ 1156 (1269)
.|-.-||-|-|++..+.
T Consensus 575 LQAmDRaHRIGQ~K~V~ 591 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVV 591 (971)
T ss_pred hHHHHHHHhhCCcCceE
Confidence 78888999999988773
No 175
>KOG1123|consensus
Probab=98.86 E-value=2.8e-08 Score=112.58 Aligned_cols=277 Identities=16% Similarity=0.111 Sum_probs=156.2
Q ss_pred CceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccCCCCCCCEEEEc
Q psy12699 825 PLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQGEEKPANHVACT 899 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~~~~~~~Ivv~T 899 (1269)
++-+++.|.|+|||++.+.+... .+++++++..-.-+.|+.+++..... .++..|.+.+. ....++.|+|.|
T Consensus 321 RSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke---~~~~~~gvvvsT 397 (776)
T KOG1123|consen 321 RSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE---RFPSGAGVVVTT 397 (776)
T ss_pred cCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc---cCCCCCcEEEEe
Confidence 57889999999999988666555 78899999999999999988876432 45556665332 223378899999
Q ss_pred cccccC----------------CCCeeEEEEecccccccCCchhHHH----HHHhccCcceE----------EEEeecCC
Q psy12699 900 VEMTSV----------------NIPYEVAVIDEIQMMRDITRGWAWT----RALLGLMAKEI----------HVCGEAGA 949 (1269)
Q Consensus 900 ~e~~~~----------------l~~~~~lViDEah~~~d~~rg~~~~----~~ll~l~~~~~----------~l~~s~~~ 949 (1269)
+.|... -+.++++++||+|-+-..-+...++ ..-++|.+.-+ .+++..-.
T Consensus 398 YsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlY 477 (776)
T KOG1123|consen 398 YSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLY 477 (776)
T ss_pred eehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhhccceeEEeeccccccccceeecchhh
Confidence 776541 4579999999999884321222221 11245544211 11111000
Q ss_pred hHHHHHHHHHcCCceEEEecccCCcccccccccccc-CCcCCCCEEEEe--cH-HhHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 950 VDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSL-DNIQPGDCIVCF--SK-NDVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 950 ~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~~~l-~~~~~g~~iv~~--s~-~~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
..+.-++. ..|.-..+.-.+--.|....... +-+ ....+...+... ++ +.|+-+.+.-++.|.+..+.-...-.
T Consensus 478 EAnWmdL~-~kGhIA~VqCaEVWCpMt~eFy~-eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 478 EANWMDLQ-KKGHIAKVQCAEVWCPMTPEFYR-EYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred hccHHHHH-hCCceeEEeeeeeecCCCHHHHH-HHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH
Confidence 00001111 12222222222221221110000 000 011111222222 22 23444444444445443332222111
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1105 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~G 1105 (1269)
-.+ .++ +.| =.+++|..++.||-++++.|+. +.+++-+.-+.+..++
T Consensus 556 Lk~-YAi-----------------------------kl~--KpfIYG~Tsq~ERm~ILqnFq~-n~~vNTIFlSKVgDtS 602 (776)
T KOG1123|consen 556 LKE-YAI-----------------------------KLG--KPFIYGPTSQNERMKILQNFQT-NPKVNTIFLSKVGDTS 602 (776)
T ss_pred HHH-HHH-----------------------------HcC--CceEECCCchhHHHHHHHhccc-CCccceEEEeeccCcc
Confidence 111 111 111 2456999999999999999994 5678889999999999
Q ss_pred ccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc
Q psy12699 1106 LNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1106 IDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
+|+ .+++.|..... | -|..+=.||.||.-|+.+.
T Consensus 603 iDLPEAnvLIQISSH-------~------GSRRQEAQRLGRILRAKk~ 637 (776)
T KOG1123|consen 603 IDLPEANVLIQISSH-------G------GSRRQEAQRLGRILRAKKR 637 (776)
T ss_pred ccCCcccEEEEEccc-------c------cchHHHHHHHHHHHHHhhc
Confidence 999 99998987751 1 3467778999999997643
No 176
>KOG0390|consensus
Probab=98.84 E-value=7.6e-08 Score=118.47 Aligned_cols=89 Identities=27% Similarity=0.308 Sum_probs=75.1
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCee-EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK-VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~-VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
-+|..+..+||.|+..+|+.+++.|++|.+..+ .|.+|-+.+.|||+ ++.+||.+|. +.+++.=
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~--------------dWNPa~d 682 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP--------------DWNPAVD 682 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC--------------CCCchhH
Confidence 348899999999999999999999997666644 56677899999999 9999999998 6778888
Q ss_pred HHHhcccCCCCCcccc-----ccCCCCccc
Q psy12699 1140 LQIAGRAGRFNTHFEK-----LAGSHPALN 1164 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~-----~~~~~p~~~ 1164 (1269)
.|-+.|+-|.|++.-| ++-..+++.
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatGtiEEk 712 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATGTIEEK 712 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCCCchHH
Confidence 9999999999999766 444455544
No 177
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.82 E-value=6.3e-08 Score=126.46 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=39.1
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh----cCCcEEEEcchHHHHHHHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL----SAESGVYCGPLKMLATEVFK 866 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~----~~~~~lil~Ptr~La~Qi~~ 866 (1269)
.+.+|+++++.||||+|||++|+.... .+++++|.+||++|..|+..
T Consensus 260 ~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 260 QLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred HhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 356789999999999999999944432 36799999999999999964
No 178
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.78 E-value=2e-08 Score=107.55 Aligned_cols=138 Identities=20% Similarity=0.115 Sum_probs=85.7
Q ss_pred ccC-CceEEeccCCCCchHHHHHHH----hc--CCcEEEEcchHHHHHHHHHHHhccCCC-----ceeeecceeeecc-C
Q psy12699 822 YCG-PLKIHAGPTNSGKTYHALERF----LS--AESGVYCGPLKMLATEVFKKSNDRGTP-----CDLITGEEKKFIQ-G 888 (1269)
Q Consensus 822 ~~g-~~vlv~apTGsGKTl~~l~~l----~~--~~~~lil~Ptr~La~Qi~~~l~~~g~~-----v~~~~G~~~~~~~-~ 888 (1269)
.++ +++++.+|||+|||.++...+ .. ..++++++|++.++.|+.+++.+.... .....+....... .
T Consensus 21 ~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (201)
T smart00487 21 LSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRK 100 (201)
T ss_pred HcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHH
Confidence 444 777888888888877552222 22 278999999999999999999765532 2223332210000 0
Q ss_pred CCCC-CCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 889 EEKP-ANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 889 ~~~~-~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
.... .+++++|++.+. ...+++++|+||+|++.+..+...+..++..+......+..++++.+........
T Consensus 101 ~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 101 LESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred HhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHH
Confidence 1113 399999976332 2457889999999999754566677777665644444455555555555555433
No 179
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.76 E-value=2.8e-08 Score=93.58 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHH
Q psy12699 209 GYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCM 288 (1269)
Q Consensus 209 G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~ 288 (1269)
-.+|+++|++++++..++.|--+ ++.||..-++.-++...+++..+.+..+.+... ...+...|..++++|+.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl---~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lflilSGla 76 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGL---EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhhHHHHH
Confidence 36899999999999999999855 367888888888898888888888888765332 12344456678999988
Q ss_pred HHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 289 GFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 289 ~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
+-...++.|++++.-.+..+..+.-+.+++++++|++++||.+ +..+|+|++++.+|.++..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~l-s~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERL-SLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhCeeeEe
Confidence 8888888999999999999999999999999999999999965 9999999999999998764
No 180
>KOG0387|consensus
Probab=98.74 E-value=1.4e-07 Score=112.97 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=67.6
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ 1141 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q 1141 (1269)
.|+...-+.|..|...|....++|++.....=.|++|.+.+-|+|+ .++.||.+|+ ..+++.=.|
T Consensus 570 ~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDP--------------dWNPStD~Q 635 (923)
T KOG0387|consen 570 KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDP--------------DWNPSTDNQ 635 (923)
T ss_pred CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECC--------------CCCCccchH
Confidence 6888999999999999999999999433444568999999999999 9999999998 345666678
Q ss_pred HhcccCCCCCcccc
Q psy12699 1142 IAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1142 R~GRaGR~G~~g~~ 1155 (1269)
-.-||-|.|++-.+
T Consensus 636 AreRawRiGQkkdV 649 (923)
T KOG0387|consen 636 ARERAWRIGQKKDV 649 (923)
T ss_pred HHHHHHhhcCccce
Confidence 89999999998666
No 181
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=3.3e-07 Score=113.22 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=64.4
Q ss_pred eEEeccCCCCchHHH-HHHH---hcCCcEEEEcchHHHHHHHH----HHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 827 KIHAGPTNSGKTYHA-LERF---LSAESGVYCGPLKMLATEVF----KKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 827 vlv~apTGsGKTl~~-l~~l---~~~~~~lil~Ptr~La~Qi~----~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
-+..+.||-|||+++ +.+. +.|+.+-++..---||.-=+ .-.+-+|..|+++..+....+.+..-.+||+++
T Consensus 94 ~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY~~DItYg 173 (925)
T PRK12903 94 SVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYS 173 (925)
T ss_pred CeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhccCCCeee
Confidence 478899999999988 3332 33666666666666654333 333557889988877644333333347999999
Q ss_pred cccccc---------------CCCCeeEEEEeccccc-ccCC
Q psy12699 899 TVEMTS---------------VNIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 899 T~e~~~---------------~l~~~~~lViDEah~~-~d~~ 924 (1269)
|..-+. ..+.+.+.||||+|-+ .|+.
T Consensus 174 Tn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 174 VHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred cCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 933111 1578999999999986 3444
No 182
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.68 E-value=7.7e-07 Score=110.76 Aligned_cols=101 Identities=21% Similarity=0.137 Sum_probs=74.5
Q ss_pred CCceEEeccCCCCchHHH-HHHH---hcCCcEEEEcchHHHHHHHHHHHh----ccCCCceeeecceeeeccCCCCCCCE
Q psy12699 824 GPLKIHAGPTNSGKTYHA-LERF---LSAESGVYCGPLKMLATEVFKKSN----DRGTPCDLITGEEKKFIQGEEKPANH 895 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~-l~~l---~~~~~~lil~Ptr~La~Qi~~~l~----~~g~~v~~~~G~~~~~~~~~~~~~~I 895 (1269)
.+.-++.+.||.|||+++ +.+. +.|..+-++.+...||.+-++.+. -+|..|+++.++....+.++.-.+||
T Consensus 89 ~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~~DI 168 (870)
T CHL00122 89 NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDI 168 (870)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcCCCC
Confidence 356788999999999988 2322 347888999999999998887764 47889998887765544434447899
Q ss_pred EEEcccccc---------------CCCCeeEEEEeccccc-ccCC
Q psy12699 896 VACTVEMTS---------------VNIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 896 vv~T~e~~~---------------~l~~~~~lViDEah~~-~d~~ 924 (1269)
+++|..-+. ..+.+.+.||||+|-+ .|+.
T Consensus 169 tYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 169 TYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred EecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 999943110 1567999999999976 4543
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.60 E-value=6.1e-07 Score=112.14 Aligned_cols=88 Identities=7% Similarity=-0.135 Sum_probs=65.7
Q ss_pred CCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhc-cC-CCceeeecceeeeccC------CCCCCCEEEEcc
Q psy12699 833 TNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSND-RG-TPCDLITGEEKKFIQG------EEKPANHVACTV 900 (1269)
Q Consensus 833 TGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~-~g-~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~ 900 (1269)
+|||||.+|+..+ ..++++|+++|...|+.|+.+++++ +| .++..++++....+.. .....+|+|||.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 3666666664333 3488999999999999999999975 65 5677777754433222 233679999997
Q ss_pred c-cccCCCCeeEEEEeccccc
Q psy12699 901 E-MTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 901 e-~~~~l~~~~~lViDEah~~ 920 (1269)
. ++.-+.+++++|+||.|.-
T Consensus 249 SAvFaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 249 SAVFAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred eeEEeccCCCCEEEEEcCCch
Confidence 7 5556999999999999965
No 184
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.57 E-value=9.1e-08 Score=101.55 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=64.5
Q ss_pred CCceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccCCCceeeec-----------------ceeee
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRGTPCDLITG-----------------EEKKF 885 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G-----------------~~~~~ 885 (1269)
.+++++.+|||||||.+++..+.+ ..++++++|++.|+.|..+++..++.......+ .....
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDK 104 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHH
T ss_pred CCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccc
Confidence 578999999999999888543222 239999999999999999999654432211110 00000
Q ss_pred ccCCCCCCCEEEEcccccc-------------------CCCCeeEEEEeccccccc
Q psy12699 886 IQGEEKPANHVACTVEMTS-------------------VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 886 ~~~~~~~~~Ivv~T~e~~~-------------------~l~~~~~lViDEah~~~d 922 (1269)
........++.+.|.+.+. .....+++|+||||+...
T Consensus 105 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 105 SESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp HHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 0112336788999854221 134789999999999954
No 185
>COG4889 Predicted helicase [General function prediction only]
Probab=98.55 E-value=5.2e-07 Score=108.31 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=61.5
Q ss_pred eeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHh
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIA 1143 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~ 1143 (1269)
++--..|.|...+|...+..-. .+..+++||---..+..|+|+ -.|.||+++. ..+..+.+|-+
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~p--------------r~smVDIVQaV 566 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDP--------------RSSMVDIVQAV 566 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecC--------------chhHHHHHHHH
Confidence 3444568899999965554322 137889999999999999999 9999999997 35688999999
Q ss_pred cccCCCCC---ccccccCC
Q psy12699 1144 GRAGRFNT---HFEKLAGS 1159 (1269)
Q Consensus 1144 GRaGR~G~---~g~~~~~~ 1159 (1269)
||+-|..+ -||.+++.
T Consensus 567 GRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 567 GRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred HHHHHhCcCCccceEEEEe
Confidence 99999543 36775543
No 186
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.54 E-value=7.1e-07 Score=112.34 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=57.7
Q ss_pred ceeEEEcCCCCHHhHHHHhhhc-----------------------c-CCCCCeeEEEEcCccccccccCceEEEEcCCCC
Q psy12699 1065 TEVAVIYGSLPPTTKLAQASKF-----------------------N-DPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIK 1120 (1269)
Q Consensus 1065 i~v~~~Hg~l~~~eR~~v~~~F-----------------------~-~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k 1120 (1269)
+.+.+|||..+...|..+|+.. + +..+...|+|||.++|.|+|++.+.+|- +
T Consensus 787 i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~-~--- 862 (1110)
T TIGR02562 787 IHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIA-D--- 862 (1110)
T ss_pred eeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeee-c---
Confidence 4578889999999888877553 1 0125779999999999999999998774 2
Q ss_pred CCcccCCccccccCCHhHHHHHhcccCCCCCc
Q psy12699 1121 PSLNEKGEREIDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1121 ~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
|.+.++.+||+||.-|.|+.
T Consensus 863 ------------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 863 ------------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred ------------cCcHHHHHHHhhcccccccC
Confidence 46789999999999998864
No 187
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.54 E-value=1.8e-06 Score=94.78 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=160.1
Q ss_pred hhhHhhhhhHHHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhcccCCccee----hhhHHHhhhceeeee
Q psy12699 126 NIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLHIVPNRSVK----ITVGMMIGGAVIAAL 200 (1269)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~ek~~~~~~----~~i~l~~~Gv~l~~~ 200 (1269)
..+..-+..|++..+.+...+.|++++.+|.+.=+ .....+.+.++++++++|-.+...+ ++++++++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 55666677788999999999999999988876533 3566788999999999998887775 699999999999988
Q ss_pred cCCc--------cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy12699 201 NDLG--------YNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEY 272 (1269)
Q Consensus 201 ~~~~--------~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1269)
.|.+ ....|++..+++.+.|..|.++.+- . +.+++...+=+++-.++..+++..+... ..++-
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~----~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~~~k-- 193 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-F----HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PFFEK-- 193 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-c----CCChhHhHHHHHHHHHHHHHHHhhcccc--ccccc--
Confidence 5532 2256999999999999999999876 2 5788998888877777766666554411 11111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCccccccc----ceeehhhhhhhhh
Q psy12699 273 LWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVN----NFIGINISIIGSI 348 (1269)
Q Consensus 273 ~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~----~~iG~~iil~G~~ 348 (1269)
..| .=+++|++-...|++.+.+.+..+..+.=.++.+..+++++.|+++|+|.. +.. .++|.+++++|.+
T Consensus 194 ----~~~-~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~K-t~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 194 ----KSW-KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKK-TKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred ----chH-HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecC-chhhHHHHHHHHHHHHHhhh
Confidence 111 134566766777888888899999999989999999999999999999976 544 4567777777765
Q ss_pred h
Q psy12699 349 L 349 (1269)
Q Consensus 349 l 349 (1269)
+
T Consensus 268 l 268 (269)
T PF06800_consen 268 L 268 (269)
T ss_pred c
Confidence 4
No 188
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.49 E-value=2.4e-07 Score=91.10 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=61.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhcc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDR 871 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~ 871 (1269)
+++..++--.+|+|||...+|+++.+ ++.++.++|++.|||.++.++++.++..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~--------------------------~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVRE--------------------------AIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHH--------------------------HHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CCceeEEecCCCCCCcccccHHHHHH--------------------------HHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 45666777889999999878877443 3456899999999999999999999865
Q ss_pred CCCceeeecceeeeccCCCCCCCEEEEccccc-----c--CCCCeeEEEEeccccc
Q psy12699 872 GTPCDLITGEEKKFIQGEEKPANHVACTVEMT-----S--VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 872 g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~-----~--~l~~~~~lViDEah~~ 920 (1269)
..++....... ....+.-|-++|...+ + ...+++++|+||+|..
T Consensus 57 ~~~~~t~~~~~-----~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 57 PVRFHTNARMR-----THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp SEEEESTTSS---------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--
T ss_pred CcccCceeeec-----cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC
Confidence 43222111110 1122456778874421 1 2679999999999997
No 189
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.45 E-value=7.7e-07 Score=84.06 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH-HHhhcccccC-CCChhhhHhhhhhHHHHHHHhhhcc
Q psy12699 69 LFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYV-GKKLRFIQFP-NYHRNIFFELMPLPFIYLGNMVFGL 146 (1269)
Q Consensus 69 ~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (1269)
++..++.....++.|.-+++ .+ |.+-++.|.++..+++.. ....++.+.. ..+.+.+..+..-|+...++..++|
T Consensus 9 LLsA~fa~L~~iF~KIGl~~--vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf 85 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLEG--VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHHHHHHHHHHHHHHHhccc--cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHH
Confidence 33334444445588988865 44 334556666655555533 3333333222 2355555556666788899999999
Q ss_pred ccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 147 GGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 147 ~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
.+++.-.+|-..-+-.++|+++.+++++|++|+++...|+|++++++|+++++.
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999998764
No 190
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.43 E-value=8.4e-06 Score=101.50 Aligned_cols=100 Identities=21% Similarity=0.156 Sum_probs=72.9
Q ss_pred CceEEeccCCCCchHHH-HHHH---hcCCcEEEEcchHHHHHHHHHHHh----ccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 825 PLKIHAGPTNSGKTYHA-LERF---LSAESGVYCGPLKMLATEVFKKSN----DRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~-l~~l---~~~~~~lil~Ptr~La~Qi~~~l~----~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+--++.+.||-|||+++ +.+. +.|+.+-++.+..-||..=++.+. -+|..|+++.++....+.+..-.+||+
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DIt 178 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDIT 178 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeE
Confidence 44578899999999887 3333 347888899999999987776654 478899988876554444444489999
Q ss_pred EEcccccc---------------CCCCeeEEEEeccccc-ccCC
Q psy12699 897 ACTVEMTS---------------VNIPYEVAVIDEIQMM-RDIT 924 (1269)
Q Consensus 897 v~T~e~~~---------------~l~~~~~lViDEah~~-~d~~ 924 (1269)
++|..-+. ..+.+.+.||||+|.+ .|+.
T Consensus 179 YgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEA 222 (939)
T PRK12902 179 YATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEA 222 (939)
T ss_pred EecCCcccccchhhhhcccccccccCccceEEEecccceeeccC
Confidence 99944221 1578999999999987 4544
No 191
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.42 E-value=3.6e-07 Score=90.31 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHH-HHHHhhhccccccccchh
Q psy12699 77 FITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFI-YLGNMVFGLGGTKELSLP 155 (1269)
Q Consensus 77 ~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~sL~~is~s 155 (1269)
...+++|...++ ++ +...++++++.+.+++.+....+.......+.+.+...+..+++ ..+...+++.++++++++
T Consensus 5 ~~~~~~k~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 5 IYSVFSKKLLKK--IS-PLSITFWRFLIAGILLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred eHHHHHHHHhcc--CC-HHHHHHHHHHHHHHHHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 345578888876 55 44577777777775222222222222344456666666667766 588999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeee
Q psy12699 156 MFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAA 199 (1269)
Q Consensus 156 ~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~ 199 (1269)
.++++.++.|+++.++++++++|+++++++++++++++|++++.
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987653
No 192
>KOG0384|consensus
Probab=98.34 E-value=4.8e-06 Score=104.51 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=70.0
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhcc-CCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFN-DPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~-~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
.+|++---+.|+++.+.|+..++.|+ +.....-.|+||-+.+-|||+ .+|+||++|. ..++.+=
T Consensus 721 ~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDS--------------DWNPQND 786 (1373)
T KOG0384|consen 721 LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDS--------------DWNPQND 786 (1373)
T ss_pred HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCC--------------CCCcchH
Confidence 45666677899999999999999999 445678999999999999999 9999999997 4557777
Q ss_pred HHHhcccCCCCCcccc
Q psy12699 1140 LQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~ 1155 (1269)
+|---||-|-|++-.+
T Consensus 787 LQAqARaHRIGQkk~V 802 (1373)
T KOG0384|consen 787 LQAQARAHRIGQKKHV 802 (1373)
T ss_pred HHHHHHHHhhcccceE
Confidence 8999999999999877
No 193
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.31 E-value=1.2e-06 Score=86.47 Aligned_cols=124 Identities=20% Similarity=0.274 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHH
Q psy12699 218 FLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMG-FILNYSI 296 (1269)
Q Consensus 218 ~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~-~~~~~~~ 296 (1269)
++||.+.++.|+..+ +.++....++....+.+ ++++..+.+... ....+...+..+++.++++ .+...+.
T Consensus 1 ~~~a~~~~~~k~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK---KISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhc---cCCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHH
Confidence 468899999999663 48999999999999988 666666554432 1122233344455556654 5555557
Q ss_pred HHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 297 MLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 297 ~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
++++++.++...+++..+.|+++.++++++++|.+ +..+++|++++++|+++..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~-~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERP-SWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999966 9999999999999998764
No 194
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.30 E-value=7.9e-07 Score=86.49 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=67.0
Q ss_pred hhhHhhhhhHHHH-HHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCc
Q psy12699 126 NIFFELMPLPFIY-LGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLG 204 (1269)
Q Consensus 126 ~~~~~~~~~~l~~-~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~ 204 (1269)
+.+..+...+++. ..+..++++|+++.+ +...++.++.|+|+++++++++|||++++++++++++++|++++.+++.+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344455556665 488999999999999 58889999999999999999999999999999999999999999877654
No 195
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.22 E-value=3.4e-05 Score=95.30 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=68.0
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhc
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
..+.+.++-+|.|+|||++ +..||...-. ..+.+++++..+|.|+.|.+++++.
T Consensus 47 ~~~~V~vVRSpMGTGKTta-Li~wLk~~l~-------------------------~~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTA-LIRWLKDALK-------------------------NPDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred CCCCeEEEECCCCCCcHHH-HHHHHHHhcc-------------------------CCCCeEEEEEhHHHHHHHHHHHHhh
Confidence 4677889999999999997 5667554200 2368999999999999999999987
Q ss_pred cCCCceeeecceeeeccCCCCCCCEEEEcccccc-----CCCCeeEEEEecccccc
Q psy12699 871 RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-----VNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 871 ~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-----~l~~~~~lViDEah~~~ 921 (1269)
.+..--..+.+..... ......+-+++..+.+. .+.++|+|||||+--..
T Consensus 101 ~~l~gFv~Y~d~~~~~-i~~~~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL 155 (824)
T PF02399_consen 101 AGLSGFVNYLDSDDYI-IDGRPYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVL 155 (824)
T ss_pred cCCCcceeeecccccc-ccccccCeEEEEehhhhhcccccccccCEEEEehHHHHH
Confidence 6543111111111000 01113456666666443 25679999999997653
No 196
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.15 E-value=2.4e-06 Score=105.53 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=41.0
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh------cCCcEEEEcchHHHHHHHHHHHh
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL------SAESGVYCGPLKMLATEVFKKSN 869 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~------~~~~~lil~Ptr~La~Qi~~~l~ 869 (1269)
++.+++.+++.||||+|||++|+.... .+++++|.+||++|+.|+.+.+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 346688899999999999999944432 37899999999999999997664
No 197
>KOG1000|consensus
Probab=98.14 E-value=4e-05 Score=87.72 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=59.4
Q ss_pred ccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1061 ~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
.++++.-.-+.|..++.+|+...+.|...+...=-+++-.++++|+|+ ..+.|++..+ +.++.-.
T Consensus 513 ~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL--------------~wnPgvL 578 (689)
T KOG1000|consen 513 NKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL--------------HWNPGVL 578 (689)
T ss_pred HHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe--------------cCCCceE
Confidence 345555667788999999999999999423333336677889999999 9999999998 4455556
Q ss_pred HHHhcccCCCCCcccc
Q psy12699 1140 LQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~ 1155 (1269)
+|---|+-|.|++.-+
T Consensus 579 lQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSV 594 (689)
T ss_pred Eechhhhhhcccccee
Confidence 6777777777776544
No 198
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.11 E-value=3.5e-05 Score=88.65 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=106.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHH
Q psy12699 205 YNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFIL 284 (1269)
Q Consensus 205 ~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 284 (1269)
....|.+++++++++|+...++.|. . .+.+|.++.++...++.++++++.....+....... ..+...+..++.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~-~---~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKL-I---YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFMLAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-h---cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHHHH
Confidence 3457999999999999999999976 3 258899999999999988777665443322221110 011222223334
Q ss_pred HHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 285 SCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 285 ~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
.++.......+.+++++++++...++..++.|++++++++++++|+. +..+++|+++.++|+++..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~-~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERF-RRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 44444455666889999999999999999999999999999999965 9999999999999999865
No 199
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.05 E-value=3.5e-05 Score=86.74 Aligned_cols=139 Identities=16% Similarity=0.227 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hhcccchHHHHHHHHHHH
Q psy12699 208 QGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVL-EYEYLWDMWFQIQFILSC 286 (1269)
Q Consensus 208 ~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~ 286 (1269)
.|++++++++++++...++.|. +. +.+|.++.++-++++++++++......+..... ..........+..+.+.|
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 4899999999999999999997 42 489999999999998888776554443221111 111001111233456667
Q ss_pred HHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 287 CMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
++......+.+++++++++...+++.+..|++++++++++++|+. +..+++|+++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~-~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERI-SRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 666666677888999999999999999999999999999999965 9999999999999998754
No 200
>KOG0389|consensus
Probab=98.03 E-value=6.5e-05 Score=90.75 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=60.0
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ 1141 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q 1141 (1269)
.|+.-..+.|..+-.+|+.++..|...+.-.-.|++|-+.+-|||+ .+++||.+|.. || |.+ =.|
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d---FN--------P~d---D~Q 865 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID---FN--------PYD---DKQ 865 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC---CC--------Ccc---cch
Confidence 4556777899999999999999999535556679999999999999 99999999972 22 222 245
Q ss_pred HhcccCCCCCcccc
Q psy12699 1142 IAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1142 R~GRaGR~G~~g~~ 1155 (1269)
---|+-|.|+...+
T Consensus 866 AEDRcHRvGQtkpV 879 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPV 879 (941)
T ss_pred hHHHHHhhCCccee
Confidence 55566666666554
No 201
>KOG0392|consensus
Probab=98.00 E-value=7.7e-05 Score=93.68 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=58.7
Q ss_pred EEcCCCCHHhHHHHhhhccCCCC-CeeEE-EEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1069 VIYGSLPPTTKLAQASKFNDPDN-PCKVM-VATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1069 ~~Hg~l~~~eR~~v~~~F~~~~g-~~~VL-VaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
.+.|..++.+|.++.++|+ ++ .++|| ++|-+.+-|+|+ ++|+||+++- | | ++-.=.|-.-|
T Consensus 1372 RLDGSVpp~~R~kiV~~FN--~DptIDvLlLTThVGGLGLNLTGADTVVFvEH---D----------W-NPMrDLQAMDR 1435 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFN--EDPTIDVLLLTTHVGGLGLNLTGADTVVFVEH---D----------W-NPMRDLQAMDR 1435 (1549)
T ss_pred EecCCCCcHHHHHHHHHhc--CCCceeEEEEeeeccccccccCCCceEEEEec---C----------C-CchhhHHHHHH
Confidence 6699999999999999999 44 67775 566799999999 9999999985 1 2 23333899999
Q ss_pred cCCCCCcccc
Q psy12699 1146 AGRFNTHFEK 1155 (1269)
Q Consensus 1146 aGR~G~~g~~ 1155 (1269)
|-|-|++..+
T Consensus 1436 AHRIGQKrvV 1445 (1549)
T KOG0392|consen 1436 AHRIGQKRVV 1445 (1549)
T ss_pred HHhhcCceee
Confidence 9999998766
No 202
>KOG0952|consensus
Probab=98.00 E-value=3.3e-06 Score=104.37 Aligned_cols=151 Identities=21% Similarity=0.130 Sum_probs=101.1
Q ss_pred CCceEEeccCCCCchHHHHHHHhc------CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS------AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~------~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
..++++.+|||+|||++|..++.. +.+++|++|.++|..+-.+++.+ .|.++.-.+|+.... -..-..+
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd-~~~v~~~ 1021 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD-VKAVREA 1021 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC-hhheecC
Confidence 467889999999999999544433 78999999999999888877653 355677777775542 1122378
Q ss_pred CEEEEccccccC----------CCCeeEEEEecccccccCCchhHHHHHHhccCc------ceEEEEeecCChHHHHHHH
Q psy12699 894 NHVACTVEMTSV----------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA------KEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 894 ~Ivv~T~e~~~~----------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~------~~~~l~~s~~~~~~~~~l~ 957 (1269)
+++|.|+|...- .++++.+|+||.|..++ +||..++.+..+... +.+...+-.+...+..++.
T Consensus 1022 ~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla 1100 (1230)
T KOG0952|consen 1022 DIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLA 1100 (1230)
T ss_pred ceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHH
Confidence 999999995542 66899999999999964 678777665544322 3344444444444445555
Q ss_pred HHcCCceE--EEecccCCccc
Q psy12699 958 MTTNEDVE--VYKYKRLTELQ 976 (1269)
Q Consensus 958 ~~~~~~~~--v~~~~r~~~l~ 976 (1269)
++.+..-. .....|++|+.
T Consensus 1101 ~wl~~~~~~nf~~svrpvp~~ 1121 (1230)
T KOG0952|consen 1101 DWLNIKDMYNFRPSVRPVPLE 1121 (1230)
T ss_pred HHhCCCCcCCCCcccccCCce
Confidence 55443222 44455555554
No 203
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.93 E-value=0.0001 Score=83.14 Aligned_cols=132 Identities=13% Similarity=-0.018 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHH-HHHH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFI-YLGN 141 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 141 (1269)
.+.+.+++..+++....++.|....+.+.+. .....+++.++.+++.......... ...+...+..++..+++ ..+.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPEL-LQFTGWVLLLGALLLLPFAWFLGPN-PQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCchH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHH
Confidence 4555556666666666678888876544332 2233356666666554443322111 22234444445555655 4678
Q ss_pred hhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhce
Q psy12699 142 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAV 196 (1269)
Q Consensus 142 ~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~ 196 (1269)
..++++++++++++.++++.++.|++++++++++++|++++.+++|++++++|++
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999974
No 204
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.90 E-value=1.3e-05 Score=103.72 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=38.6
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh---cCCcEEEEcchHHHHHHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL---SAESGVYCGPLKMLATEVF 865 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~---~~~~~lil~Ptr~La~Qi~ 865 (1269)
.+.+++.+++.|+||+|||++|+..+. ++.+++|.+|||+|++|+.
T Consensus 260 ~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 260 DFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred HHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHH
Confidence 356688999999999999999944433 3689999999999999995
No 205
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.89 E-value=6e-05 Score=86.08 Aligned_cols=133 Identities=10% Similarity=0.105 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHH
Q psy12699 210 YVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMG 289 (1269)
Q Consensus 210 ~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~ 289 (1269)
+++.+++++++|.+.+++|+..++ .++ ..++.+....+.++|+...... ...|.. .....|..++.+++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK---EPD--FLWWALLAHSVLLTPYGLWYLA-QVGWSR---LPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc---hhH--HHHHHHHHHHHHHHHHHHHhcc-cCCCCC---cchhhHHHHHHHHHHH
Confidence 578899999999999999985532 223 3466666666666665543210 011111 1122334466677777
Q ss_pred HHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 290 FILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 290 ~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
....++.+.++++.++...+++.+..|+++.++++++|+|.+ +..+++|+++++.|+++..+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~-~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETL-SPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhc
Confidence 777777888999999999999999999999999999999965 99999999999999987653
No 206
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.89 E-value=0.00086 Score=77.05 Aligned_cols=286 Identities=8% Similarity=0.016 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH-Hhhcc----cccCCCChhhhHhhhhhHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVG-KKLRF----IQFPNYHRNIFFELMPLPF 136 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~-~~~~~----~~~~~~~~~~~~~~~~~~l 136 (1269)
..+++++++-++++.+...-.|. .....+...+. ...+++++++... ..... ......+...+..-+..|+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~---v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWS---VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCchhHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 55666666666666666666676 44444444433 2222444443311 11110 1112234444555566678
Q ss_pred HHHHHhhhccccccccchhHHH-HHHHhHHHHHHHHHHHHhcccC---Ccc----eehhhHHHhhhceeeee----cCC-
Q psy12699 137 IYLGNMVFGLGGTKELSLPMFT-MLRRFSILMTMIAEYYVLHIVP---NRS----VKITVGMMIGGAVIAAL----NDL- 203 (1269)
Q Consensus 137 ~~~~~~~~~~~sL~~is~s~~~-~i~~~~Pift~lls~l~~~ek~---~~~----~~~~i~l~~~Gv~l~~~----~~~- 203 (1269)
+..+.+.+...+++|+.+|... +...+..++..++..++++|-. +-. ..++++++++|+++.+. .|.
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 8899999999999999999875 4445667888888888888644 322 35899999999998877 332
Q ss_pred --------ccchHHHHHHHHHHHHHHHHHHHHHhhc--C---CCCCCChHHHHHHHHHHHHHHHHHH----HHH---h-h
Q psy12699 204 --------GYNFQGYVFVLLNNFLTAVNGVYTKKKL--D---PKKDMGKYGLMFYSSVFMLPVTVIF----IYL---S-D 262 (1269)
Q Consensus 204 --------~~~~~G~ll~l~s~~~~a~~~v~~k~~l--~---~~~~~~~~~l~~~~~~~~~~~~~~~----~~~---~-~ 262 (1269)
.....|++++++|.+.++.|......-. . ...+.++.....-+....++-.+.. ..+ . .
T Consensus 162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~ 241 (345)
T PRK13499 162 MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNK 241 (345)
T ss_pred cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1235799999999999999994332211 0 1123444443333333111211111 121 1 1
Q ss_pred hhHHHHhhcccch--HHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhh---hh-hhHHHHHHHHHhhccCccccc---
Q psy12699 263 DYAKVLEYEYLWD--MWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTI---IG-CLKNILLTYLGMFIGGDYVYS--- 333 (1269)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv---~~-~lk~v~~~lls~l~fge~~~s--- 333 (1269)
.+........... ..-.+..++.|++-...+++.++...+.+.....+ +. .+..+++.+-|++ ++|.. +
T Consensus 242 ~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K-~a~~ 319 (345)
T PRK13499 242 DLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWK-GASR 319 (345)
T ss_pred CcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhcc-CCCc
Confidence 1000111111000 11122345566666666666666666665443333 33 6777888888984 89976 5
Q ss_pred ---ccceeehhhhhhhhhhhhhh
Q psy12699 334 ---VNNFIGINISIIGSILYTIV 353 (1269)
Q Consensus 334 ---~~~~iG~~iil~G~~l~~~~ 353 (1269)
...++|++++++|..+....
T Consensus 320 k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 320 RPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHhhc
Confidence 56688999999999887654
No 207
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.87 E-value=5.5e-05 Score=86.25 Aligned_cols=210 Identities=10% Similarity=0.072 Sum_probs=117.7
Q ss_pred HHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC-Cc---cc------
Q psy12699 137 IYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND-LG---YN------ 206 (1269)
Q Consensus 137 ~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~-~~---~~------ 206 (1269)
++.++..+.+.|+.+.|.+..+-+..+..++.++++..+++||++++.+.|++++++|++++.... .+ .+
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~ 138 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIA 138 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHH
Confidence 356777888899999999999999999999999999999999999999999999999987765421 11 10
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHh-hcccchH
Q psy12699 207 ------FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSV---FMLPVTVIFIYLSDDYAKVLE-YEYLWDM 276 (1269)
Q Consensus 207 ------~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 276 (1269)
+..++......++ .+.....++ .+ +.+ +..|..+ ++....+..-....-...... ......+
T Consensus 139 ~~~~~~fl~y~~~~~~~~~-~L~~~~~~r-~g---~~~---i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~ 210 (300)
T PF05653_consen 139 LLSQPGFLVYFILVLVLIL-ILIFFIKPR-YG---RRN---ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP 210 (300)
T ss_pred HhcCcceehhHHHHHHHHH-HHHHhhcch-hc---ccc---eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh
Confidence 1112111111111 111111111 11 111 2223222 222111110000000001110 0112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCccchh-hhhhhHHHHHHHHHhhccCcc-cccc----cceeehhhhhhhhhhh
Q psy12699 277 WFQIQFILSCCMGFILNYSIMLCTQYNSALTTT-IIGCLKNILLTYLGMFIGGDY-VYSV----NNFIGINISIIGSILY 350 (1269)
Q Consensus 277 ~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~s-v~~~lk~v~~~lls~l~fge~-~~s~----~~~iG~~iil~G~~l~ 350 (1269)
..|..++...+++...-++...++++.++.... +...+-...+++-|.++|+|. .++. ....|..+++.|+++.
T Consensus 211 ~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 211 LTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 445444444444444444456688888776654 344455567777888899983 2233 3356778888888877
Q ss_pred hhhc
Q psy12699 351 TIVT 354 (1269)
Q Consensus 351 ~~~~ 354 (1269)
+..+
T Consensus 291 ~~~~ 294 (300)
T PF05653_consen 291 SSSK 294 (300)
T ss_pred eccC
Confidence 5443
No 208
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.00038 Score=88.06 Aligned_cols=98 Identities=21% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCccchhhhhhhccCccccccc-cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCce-------
Q psy12699 1040 NPCKVMVATDAIGMGLNFRGIE-SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIR------- 1111 (1269)
Q Consensus 1040 ~~~~~l~~t~~~~~~~~~~~l~-~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~------- 1111 (1269)
...+.|+.|..++....+.+++ ..|++.-++++..-.+|-+.+-++= ..-.|-||||.|+||-||...
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG----~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAG----QPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcC----CCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 3445555555555444444444 4577666666665444444443332 245789999999999999321
Q ss_pred --EEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1112 --RVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1112 --~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
+||-... +-|..--.|..||+||-|..|..
T Consensus 703 GL~VIgTer--------------heSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 703 GLAIIGTER--------------HESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred CCEEEEccC--------------CCcHHHHHHHhcccccCCCCCcc
Confidence 3444333 66777789999999999999987
No 209
>KOG0330|consensus
Probab=97.79 E-value=0.0002 Score=80.29 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=60.1
Q ss_pred CCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 986 DNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 986 ~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
+....+..+||+ +...+..++-.|+..|..+..+||.|++..|...+..|.. +.+..|++||...+|.+..
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~--~~r~iLv~TDVaSRGLDip 367 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA--GARSILVCTDVASRGLDIP 367 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc--cCCcEEEecchhcccCCCC
Confidence 334446777777 8888999999999999999999999999999999988864 5677899999999887765
No 210
>KOG1002|consensus
Probab=97.78 E-value=0.00016 Score=82.60 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=62.3
Q ss_pred ccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1061 ~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
-+.|++++-+-|+|++..|+..++.|++.....-.|++-.+.+..+|+ .+.+|...|+ |.+++--
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP--------------WWNpaVe 724 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP--------------WWNPAVE 724 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc--------------cccHHHH
Confidence 377899999999999999999999999422334457777888889999 9999999998 6666666
Q ss_pred HHHhcccCCCCCc
Q psy12699 1140 LQIAGRAGRFNTH 1152 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~ 1152 (1269)
.|---|..|-|+.
T Consensus 725 ~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 725 WQAQDRIHRIGQY 737 (791)
T ss_pred hhhhhhHHhhcCc
Confidence 6666666666654
No 211
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.67 E-value=0.00045 Score=71.01 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHhhcccccCC----C-------ChhhhH
Q psy12699 66 STALFYALCSLFITIVNKSVLTS-----YVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPN----Y-------HRNIFF 129 (1269)
Q Consensus 66 ~~~~~~~~~~~~~~~~nK~~l~~-----~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~----~-------~~~~~~ 129 (1269)
+.++...+++..-.++.|.++++ .+++...++.+.......+++......+..+... . ....+.
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 44556666666677788888887 5778666555555555555444433322221110 0 113333
Q ss_pred hhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeee
Q psy12699 130 ELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAA 199 (1269)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~ 199 (1269)
.++..+++..+.....+..++++|+-+++++..+..+++.++++++++|++++.+++|+++.++|+++..
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4555567778888899999999999999999999999999999999999999999999999999998754
No 212
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.60 E-value=0.00041 Score=81.38 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHH
Q psy12699 208 QGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCC 287 (1269)
Q Consensus 208 ~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v 287 (1269)
.-++.+++.-++|+.+.++.|..++ ...++..+.+|-..++.+++++++...+.... + ...+...|..+.+.|+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~--~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~-~---~~~~~~~~~~l~l~g~ 86 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATS--KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS-L---PPLSVSILSKIGLLGF 86 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc-c---CcchHHHHHHHHHHHH
Confidence 3466778889999999999999883 47899999999988988888887765432110 0 1112223445666777
Q ss_pred HHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhc------cCcccccccceeehhhhhhhhhhhhh
Q psy12699 288 MGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFI------GGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 288 ~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~------fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
+++..+.+.++.++++++...+++.++.|+++.++++++ ++|.. +..+++|+++.++|+.+...
T Consensus 87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~-~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS-SVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccc-cHHHHHHHHHHHHHHHHHHH
Confidence 775555567889999999999999999999999999999 68955 99999999999999987654
No 213
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.59 E-value=0.00015 Score=83.37 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=57.0
Q ss_pred cEEEEcchHHHHHHHHHHHhccC----CCceeeecce-ee-eccCCCCCCCEEEEcccccc---------C--CCCeeEE
Q psy12699 850 SGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEE-KK-FIQGEEKPANHVACTVEMTS---------V--NIPYEVA 912 (1269)
Q Consensus 850 ~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~-~~-~~~~~~~~~~Ivv~T~e~~~---------~--l~~~~~l 912 (1269)
++||++|. .+..|+.+++.+.. .++....|.. .. .........+++++|++.+. . ..+++++
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~v 138 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRV 138 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEE
T ss_pred ceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeE
Confidence 49999999 77789999987654 2455555554 11 11122337899999988444 1 3369999
Q ss_pred EEecccccccCCchhHHHHHHhccCcceEEEE
Q psy12699 913 VIDEIQMMRDITRGWAWTRALLGLMAKEIHVC 944 (1269)
Q Consensus 913 ViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~ 944 (1269)
|+||+|.+.+ ........+..+......++
T Consensus 139 IvDEaH~~k~--~~s~~~~~l~~l~~~~~~lL 168 (299)
T PF00176_consen 139 IVDEAHRLKN--KDSKRYKALRKLRARYRWLL 168 (299)
T ss_dssp EETTGGGGTT--TTSHHHHHHHCCCECEEEEE
T ss_pred EEeccccccc--ccccccccccccccceEEee
Confidence 9999999943 23344455555654444433
No 214
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.46 E-value=0.00051 Score=66.24 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 136 FIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 136 l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
+++.++..+...+++.+|++.+..+.++.++++.++++++++|+++++++++++++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34677888888999999999999999999999999999999999999999999999999987653
No 215
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.45 E-value=0.0011 Score=76.36 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHH-HHHHh
Q psy12699 64 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFI-YLGNM 142 (1269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 142 (1269)
+.+.+++-.+++...+++.|...+++ + +..+++...+.+.++..+...... ....+...+...+.++++ ..+..
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGAEH--G-PATVAIGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC--C-chHHHHHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666777775543 3 233344333333333333222211 112233333333455655 46777
Q ss_pred hhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 143 VFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 143 ~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
.++++++++++++.++++..+.|++..++++++++|++++.+++|.+++++|++....
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999999877643
No 216
>KOG0386|consensus
Probab=97.45 E-value=0.00022 Score=88.33 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=66.5
Q ss_pred CceeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH
Q psy12699 1064 GTEVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ 1141 (1269)
Q Consensus 1064 gi~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q 1141 (1269)
++.-..+.|....++|-..++.|+.|+ .....|.+|-..+.|+|+ -+++||.+|. ..++....|
T Consensus 750 ~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds--------------dwnp~~d~q 815 (1157)
T KOG0386|consen 750 EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS--------------DWNPHQDLQ 815 (1157)
T ss_pred hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC--------------CCCchhHHH
Confidence 344566789999999999999999544 456789999999999999 9999999997 345788899
Q ss_pred HhcccCCCCCcccc
Q psy12699 1142 IAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1142 R~GRaGR~G~~g~~ 1155 (1269)
+.-||-|.|++-++
T Consensus 816 aqdrahrigq~~ev 829 (1157)
T KOG0386|consen 816 AQDRAHRIGQKKEV 829 (1157)
T ss_pred HHHHHHHhhchhhe
Confidence 99999999998777
No 217
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.40 E-value=0.00019 Score=94.63 Aligned_cols=47 Identities=9% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc---CceEEEEcCCCCC
Q psy12699 1073 SLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL---SIRRVIFYSLIKP 1121 (1269)
Q Consensus 1073 ~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi---~v~~VI~~~~~k~ 1121 (1269)
++....|.++++.|+ +++-.||++|+.+..|||+ ..++||..+++.+
T Consensus 787 g~~~~~r~~l~~~F~--~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~ 836 (928)
T PRK08074 787 GVSSGSRARLTKQFQ--QFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFA 836 (928)
T ss_pred CCCCCCHHHHHHHHH--hcCCeEEEecCcccCccccCCCceEEEEEecCCCC
Confidence 344456888999999 7778899999999999999 4689999998553
No 218
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.40 E-value=0.0016 Score=71.29 Aligned_cols=142 Identities=14% Similarity=0.221 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHH
Q psy12699 206 NFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILS 285 (1269)
Q Consensus 206 ~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 285 (1269)
+..|+++++.+.+.|++.-.+.|- + +..++.++..+-.++++++++....+...+...++. ..++..++.++++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l---~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~--~~~p~~~~~~~l~ 78 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-L---EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQL--LKQPKTLLMLALT 78 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-H---ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HhCcHHHHHHHHH
Confidence 346999999999999999999987 4 257899999999999999998888887777777662 2334444455555
Q ss_pred HHHHHHHHHH-HHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 286 CCMGFILNYS-IMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 286 ~v~~~~~~~~-~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
+++- ..|.. ..|+...-..+-+|.--++.|++.+++|.++|+|. ++..|++..++..+|+..-.|...
T Consensus 79 a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr-ls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 79 ALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER-LSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHcC
Confidence 5543 34555 44789999999999999999999999999999995 599999999999999987776543
No 219
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.33 E-value=0.0017 Score=74.95 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH-hhccc-----ccCCCChhhhHhhhhhHH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGK-KLRFI-----QFPNYHRNIFFELMPLPF 136 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~-~~~~~-----~~~~~~~~~~~~~~~~~l 136 (1269)
.+.+.++.-.+++....++.|......+-+.......++++.+.+.+.... ..... .....+...+..++.+++
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 345555556666666666777765443323233334455554443332211 11110 011234444555555665
Q ss_pred H-HHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeec
Q psy12699 137 I-YLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALN 201 (1269)
Q Consensus 137 ~-~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~ 201 (1269)
+ ..+...+++.++++.+++.+..+..+.|++..++++++++|++++.+++|.+++++|+.+...+
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 5 4678888899999999999999999999999999999999999999999999999999876543
No 220
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.33 E-value=0.0011 Score=76.19 Aligned_cols=131 Identities=11% Similarity=-0.044 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHhh
Q psy12699 64 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMV 143 (1269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (1269)
+.++++.-.+++...++++|....++ + +... .....+.++........ ......+...+..++..++...+...
T Consensus 157 G~~~~l~aa~~~A~~~v~~k~~~~~~--~-~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 157 SYGLAFIGAFIWAAYCNVTRKYARGK--N-GITL--FFILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C-chhH--HHHHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666778765442 2 2211 22222222222112111 11122344444444555555677888
Q ss_pred hccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 144 FGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 144 ~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
++++++++.+++.++++.++.|++..++++++++|++++.+++|++++++|+++...
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999876643
No 221
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.23 E-value=0.0019 Score=62.83 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhh
Q psy12699 247 SVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGF-ILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMF 325 (1269)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~~~-~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l 325 (1269)
..++.+.+++.....++..+.+....... +..++..|+++. ......++++++.++ ..++...+.|+++.++|++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 5 YLFSVLFLLIILLIRGRLRDLFRALRRKP---WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444434333222221 223445555555 334446678888885 7778899999999999999
Q ss_pred ccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 326 IGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 326 ~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
+|+|.. +...++|++++++|+.+..+...
T Consensus 81 ~~~er~-~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERL-SPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHhhhhc
Confidence 999965 99999999999999999887654
No 222
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.22 E-value=0.0024 Score=73.44 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccC-CCChhhhHhhhhhHHH-HHHHh
Q psy12699 65 ISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFP-NYHRNIFFELMPLPFI-YLGNM 142 (1269)
Q Consensus 65 ~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 142 (1269)
.+.+++-++++....+..|..-.. + +...+.+++.++.+++............ ..+...+..++..+++ ..+..
T Consensus 152 ~l~~l~a~~~~a~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 152 AILILIASASWAFGSVWSSRLPLP---V-GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---c-chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444566664321 1 2335567776666555433222111111 1133444455555655 46778
Q ss_pred hhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeec
Q psy12699 143 VFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALN 201 (1269)
Q Consensus 143 ~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~ 201 (1269)
.++++++++++++.++++..+.|++.+++++++++|++++.+++|.+++++|+++....
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999876543
No 223
>KOG1580|consensus
Probab=97.22 E-value=0.00033 Score=72.96 Aligned_cols=109 Identities=12% Similarity=-0.052 Sum_probs=92.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHHHhhhhhcccccCchHHHHhhhhhHHHHH
Q psy12699 618 VFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTM 697 (1269)
Q Consensus 618 ~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~ 697 (1269)
.|.|...|.++||.+..+...++-... +-.+.|....+....-++-|.+.++.+|.+|+++|-|.--+.|++-|+=++
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVM 126 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIR--KKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVM 126 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeec--ccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCccee
Confidence 388899999999999998887765332 223455556677778899999999999999999999999999999999999
Q ss_pred HHhhhhcccccchhhHHHHHH-hhhheeeecc
Q psy12699 698 IAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQ 728 (1269)
Q Consensus 698 ~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~ 728 (1269)
++..++.+|.++|+-+++++. +.|+++--+.
T Consensus 127 ilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 127 ILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred eeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998 5898875554
No 224
>KOG2922|consensus
Probab=97.14 E-value=0.0013 Score=72.88 Aligned_cols=213 Identities=8% Similarity=0.067 Sum_probs=121.6
Q ss_pred HHH-HHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCCc---c-c---
Q psy12699 135 PFI-YLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLG---Y-N--- 206 (1269)
Q Consensus 135 ~l~-~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~~---~-~--- 206 (1269)
|++ +.++-...+.|+.|.|.+..+-+.+++.++.++++..+++|++++.-.+|++++++|-.+++..... . +
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~e 149 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEE 149 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHH
Confidence 443 6778888899999999999999999999999999999999999999999999999998777652110 0 0
Q ss_pred ------hHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH--hhh-hHH-HHhhcccch
Q psy12699 207 ------FQGYVFVLLNNF-LTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYL--SDD-YAK-VLEYEYLWD 275 (1269)
Q Consensus 207 ------~~G~ll~l~s~~-~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~~~~ 275 (1269)
-.|++.-.+-.+ ...+-..+.+. +.....++.|.++.+++..+-.... .+. ... .........
T Consensus 150 l~~~~~~~~Fliy~~~iil~~~il~~~~~p------~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~ 223 (335)
T KOG2922|consen 150 VWELATEPGFLVYVIIIILIVLILIFFYAP------RYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFY 223 (335)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHheeecc------cccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccccc
Confidence 012221111111 11111122222 1222334555555554432221110 000 000 000111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccch-hhhhhhHHHHHHHHHhhccCccc-cc----ccceeehhhhhhhhhh
Q psy12699 276 MWFQIQFILSCCMGFILNYSIMLCTQYNSALTT-TIIGCLKNILLTYLGMFIGGDYV-YS----VNNFIGINISIIGSIL 349 (1269)
Q Consensus 276 ~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~-sv~~~lk~v~~~lls~l~fge~~-~s----~~~~iG~~iil~G~~l 349 (1269)
+..|..++....+....-.....+++...+..+ .+.-.+-..++++.|.++|.|.. ++ ...+.|..++++|+++
T Consensus 224 ~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl 303 (335)
T KOG2922|consen 224 PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL 303 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence 344444444443333332224446665544444 55556667788888999998821 12 2346788888888887
Q ss_pred hhhh
Q psy12699 350 YTIV 353 (1269)
Q Consensus 350 ~~~~ 353 (1269)
....
T Consensus 304 L~~~ 307 (335)
T KOG2922|consen 304 LHRT 307 (335)
T ss_pred eeee
Confidence 7433
No 225
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.00016 Score=76.41 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=158.9
Q ss_pred CCCChhhhHhhhhhHHHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhcccCCccee----hhhHHHhhhc
Q psy12699 121 PNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLHIVPNRSVK----ITVGMMIGGA 195 (1269)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~ek~~~~~~----~~i~l~~~Gv 195 (1269)
|..+...+.--+.-|++..+.+...+.|++++.+|-+.=+ .....+-+.+++++.++|-.+..+. .++++++.|+
T Consensus 52 p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~ 131 (288)
T COG4975 52 PELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGI 131 (288)
T ss_pred CccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhh
Confidence 4445565555566678889999999999999988876533 3445678889999999998887774 8899999999
Q ss_pred eeeeecCC--------ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy12699 196 VIAALNDL--------GYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKV 267 (1269)
Q Consensus 196 ~l~~~~~~--------~~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1269)
.+.++.|. ++--.|+...+.|.+.|-.|.++.+. . +.+.++...-++.-+.+..+.+...-++.
T Consensus 132 ~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~-f----~v~g~saiLPqAiGMv~~ali~~~~~~~~--- 203 (288)
T COG4975 132 YLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQL-F----DVDGLSAILPQAIGMVIGALILGFFKMEK--- 203 (288)
T ss_pred eEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecc-c----cccchhhhhHHHHHHHHHHHHHhhccccc---
Confidence 99998663 12246888888999999999988886 3 35667777777666666555554443221
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCccccccc----ceeehhhh
Q psy12699 268 LEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVN----NFIGINIS 343 (1269)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~----~~iG~~ii 343 (1269)
..+-..| .-+..|++-...|...+.+-++.+-.|.=-++-+.-+++++-|.++++|+. |.. -++|++++
T Consensus 204 -----~~~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekK-tkkEm~~v~iGiili 276 (288)
T COG4975 204 -----RFNKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKK-TKKEMVYVIIGIILI 276 (288)
T ss_pred -----chHHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccC-chhhhhhhhhhHHHH
Confidence 1111111 234567777777888888888888777766778888999999999999976 554 45788888
Q ss_pred hhhhhhhhhh
Q psy12699 344 IIGSILYTIV 353 (1269)
Q Consensus 344 l~G~~l~~~~ 353 (1269)
++|..+....
T Consensus 277 vvgai~lg~~ 286 (288)
T COG4975 277 VVGAILLGIA 286 (288)
T ss_pred HHHhhhhhee
Confidence 8887765443
No 226
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.01 E-value=0.0056 Score=80.62 Aligned_cols=97 Identities=16% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCceEEeccCCCCchHHH------HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeee---ccCCCCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHA------LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKF---IQGEEKPAN 894 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~------l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~---~~~~~~~~~ 894 (1269)
++..++.=-||||||+.. +......+++++++-+++|-.|+.+.++.++..+......++.. +.-+.....
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~ 352 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGK 352 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCc
Confidence 455677788888888765 22223478999999999999999999987665322211111110 011222568
Q ss_pred EEEEccccccC----------CCCeeEEEEeccccc
Q psy12699 895 HVACTVEMTSV----------NIPYEVAVIDEIQMM 920 (1269)
Q Consensus 895 Ivv~T~e~~~~----------l~~~~~lViDEah~~ 920 (1269)
|+++|.+.+.. -.+==++|+||||+-
T Consensus 353 ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 353 IIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred EEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 99999775542 233457899999997
No 227
>KOG4439|consensus
Probab=96.95 E-value=0.0048 Score=74.17 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=63.8
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCC-CeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDN-PCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g-~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
+.|.....+||....++|+.+.+.|+..+| ..-.|++-.+.+.|+|+ +.+|+|..|+ -.+++-=
T Consensus 768 ~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl--------------HWNPaLE 833 (901)
T KOG4439|consen 768 KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL--------------HWNPALE 833 (901)
T ss_pred hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec--------------ccCHHHH
Confidence 556677888999999999999999994355 44556677888999999 9999999998 2345555
Q ss_pred HHHhcccCCCCCcccc
Q psy12699 1140 LQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~ 1155 (1269)
.|-.-|.-|.|++..+
T Consensus 834 qQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 834 QQACDRIYRMGQKKDV 849 (901)
T ss_pred HHHHHHHHHhcccCce
Confidence 6777888888888665
No 228
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.89 E-value=0.0081 Score=59.47 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHH
Q psy12699 208 QGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCC 287 (1269)
Q Consensus 208 ~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v 287 (1269)
.|+++.+++.++.+.-.++.|+-+++.. ....... . . ..... . .++. ..++.|+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g---~~~~~~~-~-~----~~~~~-~-------------~~p~---~~i~lgl 55 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP---LLSHAWD-F-I----AALLA-F-------------GLAL---RAVLLGL 55 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC---CccchhH-H-H----HHHHH-H-------------hccH---HHHHHHH
Confidence 4889999999999999999998653211 1111000 0 0 00000 0 0110 1233444
Q ss_pred HHHHHHHH-HHHhhhccCccchhhhhhhHHHHHHHHHhh--ccCcccccccceeehhhhhhhhhhhhhhcc
Q psy12699 288 MGFILNYS-IMLCTQYNSALTTTIIGCLKNILLTYLGMF--IGGDYVYSVNNFIGINISIIGSILYTIVTF 355 (1269)
Q Consensus 288 ~~~~~~~~-~~~~i~~~s~~t~sv~~~lk~v~~~lls~l--~fge~~~s~~~~iG~~iil~G~~l~~~~~~ 355 (1269)
..+++++. ..+++++.+...+..+-.+..+...+.++. +|||+. ++.+++|++++++|+++....++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l-s~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF-SLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHhccCCC
Confidence 44555444 557889988888877777777777777774 899955 99999999999999999875443
No 229
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.81 E-value=0.0047 Score=71.14 Aligned_cols=131 Identities=10% Similarity=0.021 Sum_probs=93.0
Q ss_pred hHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHH--HHHcCccccCCCChhhhhhhchhhHHHHHHHhhhhhccc
Q psy12699 601 LCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYV--GKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTK 678 (1269)
Q Consensus 601 ~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~sl~ 678 (1269)
+|..+....+..+-+. +++.|.+=+++-.+..+++... ..+.+.-+....-+...++-+.++++=+..-.+.+.+++
T Consensus 23 l~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555554 7777755555544433332211 122222111122235567777789999999999999999
Q ss_pred ccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCc
Q psy12699 679 ELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPV 732 (1269)
Q Consensus 679 ~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f 732 (1269)
|-|++-.|++...++|++++++++++++|+++.=++++++ ++|+++....|..-
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~ 156 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLS 156 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccc
Confidence 9999999999999999999999999999999999999999 68888888877543
No 230
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.81 E-value=0.0096 Score=58.97 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=61.8
Q ss_pred hhhH-HHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHH--HhcccCCcceehhhHHHhhhceeeeec
Q psy12699 132 MPLP-FIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYY--VLHIVPNRSVKITVGMMIGGAVIAALN 201 (1269)
Q Consensus 132 ~~~~-l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l--~~~ek~~~~~~~~i~l~~~Gv~l~~~~ 201 (1269)
+..+ +++.++..+++.+++..+++.+..+.+..++++.+.++. +++|++++.+++|++++++|++++..+
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 3344 447889999999999999999999999999889888885 899999999999999999999988754
No 231
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=96.65 E-value=0.014 Score=66.83 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHHHHHHHHHhhcccccCCCChhhhHhhhhhHHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLL----TTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFI 137 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~----~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (1269)
.+++++.++-++++....+.+|... .+ |...++.|+. .+.++..... .. ++...+..+..+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~----~~-~~~~~~~~~~g~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG----VD-GLSVLLPQAIGMVIGGIIFNLGHI----LA-KPLKKYAILLNILPGLM 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC----CC-cceehhHHHHHHHHHHHHHHHHHh----cc-cchHHHHHHHHHHHHHH
Confidence 3466666667777777777888652 22 2223333333 4444443331 11 22223333344447777
Q ss_pred HHHHhhhcccccc-ccchhHHHHHHHhHHHHHHHHHHHHhcccCCccee----hhhHHHhhhceeeee
Q psy12699 138 YLGNMVFGLGGTK-ELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVK----ITVGMMIGGAVIAAL 200 (1269)
Q Consensus 138 ~~~~~~~~~~sL~-~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~----~~i~l~~~Gv~l~~~ 200 (1269)
..+...+++.+++ +++++.+.++.+..|+...++++++++|+.+++++ +|++++++|+.+...
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 7778888889999 99999999999999999999999999999999999 999999999887643
No 232
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.64 E-value=0.011 Score=65.19 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=32.1
Q ss_pred ccCCc-eEEeccCCCCchHHH---HHHH---------hcCCcEEEEcchHHHHHHHHHHHhc
Q psy12699 822 YCGPL-KIHAGPTNSGKTYHA---LERF---------LSAESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 822 ~~g~~-vlv~apTGsGKTl~~---l~~l---------~~~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
+.... .++.||.|+|||.+. +..+ ..+.++++++|+...+.++.+++.+
T Consensus 14 ~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 14 LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 44444 666666666666332 2222 3378899999999999999999876
No 233
>PF13245 AAA_19: Part of AAA domain
Probab=96.59 E-value=0.004 Score=55.59 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=29.2
Q ss_pred eEEeccCCCCchHHH---HHHHh-c----CCcEEEEcchHHHHHHHHHHH
Q psy12699 827 KIHAGPTNSGKTYHA---LERFL-S----AESGVYCGPLKMLATEVFKKS 868 (1269)
Q Consensus 827 vlv~apTGsGKTl~~---l~~l~-~----~~~~lil~Ptr~La~Qi~~~l 868 (1269)
+++.+|.|||||... +..+. . +.++++++|++..+.++.+++
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344666666666333 12222 1 678999999999999999999
No 234
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.53 E-value=0.0024 Score=71.14 Aligned_cols=95 Identities=21% Similarity=0.162 Sum_probs=66.4
Q ss_pred ceEEeccCCCCchHHH-HHH---HhcCCcEEEEcchHHHHHHHHHHHh----ccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 826 LKIHAGPTNSGKTYHA-LER---FLSAESGVYCGPLKMLATEVFKKSN----DRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~-l~~---l~~~~~~lil~Ptr~La~Qi~~~l~----~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
.-++...||-|||+++ +.+ .+.|..+=++....-||..=++.+. .+|..++.++++....+..+.-.++|++
T Consensus 92 G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y 171 (266)
T PF07517_consen 92 GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYAADIVY 171 (266)
T ss_dssp TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHHSSEEE
T ss_pred ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHhCcccc
Confidence 3499999999999887 222 2347888888888899877776654 4799999998876543222223688999
Q ss_pred Ecccccc---------------CCCCeeEEEEeccccc
Q psy12699 898 CTVEMTS---------------VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 898 ~T~e~~~---------------~l~~~~~lViDEah~~ 920 (1269)
+|..-+. ..++++++||||+|-+
T Consensus 172 ~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 172 GTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp EEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred cccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9943110 1578999999999987
No 235
>KOG0343|consensus
Probab=96.42 E-value=0.024 Score=66.68 Aligned_cols=70 Identities=20% Similarity=0.279 Sum_probs=56.0
Q ss_pred cCCCCEEEEe-cHHhHHHHHHHHHhc--CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 988 IQPGDCIVCF-SKNDVYTVSRGIESR--GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 988 ~~~g~~iv~~-s~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
......|||+ +.+++..+.+..++. |.+...+||.+.|..|.....+|.. +....|++||...+|.+|..
T Consensus 311 hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 311 HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcc
Confidence 3344567777 889999999888875 6777789999999999998877754 34567889999999999974
No 236
>KOG1581|consensus
Probab=96.29 E-value=0.031 Score=61.59 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=106.4
Q ss_pred HHHHHHHHhHhhHhhhhhhhhhc------cC-----CCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhch
Q psy12699 593 ISTALFYALCSLFITIVNKSVLT------SY-----VFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMP 661 (1269)
Q Consensus 593 ~~~~~~y~~~S~~~~~~NK~~l~------~~-----~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p 661 (1269)
....+++|++.|-..++-=-+|. .| .|..+.||.++|-++|.++-+++-... +-+......+.+..-
T Consensus 11 ~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~--k~~~~~~apl~~y~~ 88 (327)
T KOG1581|consen 11 KIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWW--KKELSGVAPLYKYSL 88 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcc--cccCCCCCchhHHhH
Confidence 34556666666666655544443 24 588999999999999988886554332 222333466778888
Q ss_pred hhHHHHHHHhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHHh-hhheeeeccCC
Q psy12699 662 LPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYIS-FRRYCLETQSL 730 (1269)
Q Consensus 662 ~~~~~~~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~~-~g~~~~~~~d~ 730 (1269)
.++....+-+++-.||+|+|-|.+.+.|++=.+-+++...++++++++..-|++..++ +|+.+-+..+-
T Consensus 89 is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~ 158 (327)
T KOG1581|consen 89 ISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPN 158 (327)
T ss_pred HHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecC
Confidence 8899999999999999999999999999999999999999999999999999988884 88887766543
No 237
>KOG1802|consensus
Probab=96.21 E-value=0.0087 Score=71.52 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=40.3
Q ss_pred ccccCCceEEeccCCCCchHHH---HHHHh--cCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA---LERFL--SAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~---l~~l~--~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
.++...--++++|.|+|||... +..+. .+.++|+++|.-..+.|+++++.+.|.+
T Consensus 421 ~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLK 480 (935)
T KOG1802|consen 421 HVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLK 480 (935)
T ss_pred HHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCce
Confidence 3456666778888888887654 22222 2688999999999999999999876654
No 238
>KOG1583|consensus
Probab=96.20 E-value=0.0021 Score=69.14 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=91.0
Q ss_pred HHHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHH-HHcCccccCCCChhhhhhhchhhHHHHHHH
Q psy12699 592 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVG-KKLRFIQFPNYHRNIFFELMPLPFIYLGNM 670 (1269)
Q Consensus 592 ~~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i 670 (1269)
...+..|-++||..+.+= .+.+.. =.....+|+.|++..+.--.+. ..++.++ +.-..|.++-....|-+.-
T Consensus 6 ~ai~~vf~GCcsnvv~lE--~L~~~~-pgsgNLITFaqFlFia~eGlif~skf~~~k----~kiplk~Y~i~V~mFF~vn 78 (330)
T KOG1583|consen 6 AAISLVFGGCCSNVVFLE--LLVRNE-PGSGNLITFAQFLFIATEGLIFTSKFFTVK----PKIPLKDYAITVAMFFIVN 78 (330)
T ss_pred HHHHHHHHhhhchHHHHH--HHHHhC-CCCeeehHHHHHHHHHHhceeeeccccccC----CCCchhhhheehheeeeee
Confidence 344566666777665442 223222 2233668999987644322221 1222222 2234566666666677777
Q ss_pred hhhhhccccc-CchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeecc
Q psy12699 671 VFGLGGTKEL-SLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQ 728 (1269)
Q Consensus 671 ~~~~~sl~~~-sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~ 728 (1269)
+.||.+|+++ ++|.+.++|+-+++.++++.+++.||++|.+-+.|+++ .+|.++++..
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~ 138 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLF 138 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEee
Confidence 8899999986 99999999999999999999999999999999999999 4999988753
No 239
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.18 E-value=0.0061 Score=59.21 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=61.3
Q ss_pred hhhHHHHHHHhhhccccccccchhHHHHHH-HhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeec
Q psy12699 132 MPLPFIYLGNMVFGLGGTKELSLPMFTMLR-RFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALN 201 (1269)
Q Consensus 132 ~~~~l~~~~~~~~~~~sL~~is~s~~~~i~-~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~ 201 (1269)
....+++.++.++...+++++|++.+..+- ...-+.+.++++++++|++++.++++++++++|++++-..
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 444556788888999999999999988885 6889999999999999999999999999999999887543
No 240
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.17 E-value=0.0074 Score=66.97 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=72.5
Q ss_pred hhhhhhhchhhHHHHHHHhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCC
Q psy12699 653 RNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLP 731 (1269)
Q Consensus 653 ~~~~~~~~p~~~~~~~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~ 731 (1269)
++...++...+++|+..-.+...++++++.+.||+++.+-+++|+++.+++++|+.++.=|+++++ ++|+.+...++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 355677778899999999999999999999999999999999999999999999999999999999 6999888777665
Q ss_pred c
Q psy12699 732 V 732 (1269)
Q Consensus 732 f 732 (1269)
.
T Consensus 94 ~ 94 (244)
T PF04142_consen 94 S 94 (244)
T ss_pred c
Confidence 4
No 241
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.15 E-value=0.05 Score=62.03 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=67.1
Q ss_pred ChhhhHhhhhhHHHHH-HHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 124 HRNIFFELMPLPFIYL-GNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 124 ~~~~~~~~~~~~l~~~-~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
....+..+...+++.. ....+.+.+++..+++..+.+..+.|++.+++++++++|+++..+++|++++++|+.+...
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4555666666676655 5888999999999999999999999999999999999999999999999999999887653
No 242
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.13 E-value=0.038 Score=63.77 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHhhcccchHHHHHHHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPV--TVIFIYLSDDYAKVLEYEYLWDMWFQIQFIL 284 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 284 (1269)
..|+++++++++|++.+.+-+|+ . +.-+|+.. |- ..+++. +.|+....-..+..++.-...+...+..-++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~----k~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-V----KKWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-c----CCCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 57999999999999999999988 4 23345555 32 222211 1111111101123333333345556666777
Q ss_pred HHHHHHHHHHHHHHhhhccCc-cchhhhhhhHHHHHHHHHhhccCccc------ccccceeehhhhhhhhhhhhhhccC
Q psy12699 285 SCCMGFILNYSIMLCTQYNSA-LTTTIIGCLKNILLTYLGMFIGGDYV------YSVNNFIGINISIIGSILYTIVTFK 356 (1269)
Q Consensus 285 ~~v~~~~~~~~~~~~i~~~s~-~t~sv~~~lk~v~~~lls~l~fge~~------~s~~~~iG~~iil~G~~l~~~~~~~ 356 (1269)
+|++-...++.++..+++.+- .+..+..-+..+..++++.+++||.. -....++|.+++++|+++..+.-.+
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 888888888888888888864 45567777889999999999999721 0135678999999999998875433
No 243
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.07 E-value=0.0063 Score=71.82 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.2
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcc--------ccccCCCCeeEEEEeccc
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTV--------EMTSVNIPYEVAVIDEIQ 918 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~--------e~~~~l~~~~~lViDEah 918 (1269)
.+.+++++++...|...+.+.+.+... .. .....+..+ .......+++++|+||||
T Consensus 30 ~~~~~~~l~~n~~l~~~l~~~l~~~~~------~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 30 EGKKVLYLCGNHPLRNKLREQLAKKYN------PK----------LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred cCCceEEEEecchHHHHHHHHHhhhcc------cc----------hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 478899999999999999988864320 00 000011111 122245799999999999
Q ss_pred cccc
Q psy12699 919 MMRD 922 (1269)
Q Consensus 919 ~~~d 922 (1269)
++.+
T Consensus 94 rl~~ 97 (352)
T PF09848_consen 94 RLRT 97 (352)
T ss_pred hhhh
Confidence 9966
No 244
>KOG1803|consensus
Probab=96.06 E-value=0.0088 Score=71.49 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=26.3
Q ss_pred CCCEEEEccc-ccc-C--CCCeeEEEEecccccccCCchhHHHHHH
Q psy12699 892 PANHVACTVE-MTS-V--NIPYEVAVIDEIQMMRDITRGWAWTRAL 933 (1269)
Q Consensus 892 ~~~Ivv~T~e-~~~-~--l~~~~~lViDEah~~~d~~rg~~~~~~l 933 (1269)
+.+++++|.. ... . -..++++|||||-.-.+++ .|-..+
T Consensus 338 n~~VVfaTl~ga~~~~~~~~~fD~vIIDEaaQamE~~---cWipvl 380 (649)
T KOG1803|consen 338 NSRVVFATLGGALDRLLRKRTFDLVIIDEAAQAMEPQ---CWIPVL 380 (649)
T ss_pred ccceEEEeccchhhhhhcccCCCEEEEehhhhhccch---hhhHHh
Confidence 6789999954 222 2 3569999999997665532 555554
No 245
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.03 E-value=0.018 Score=61.87 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC-CCCCCCEEEEccccccCCCCeeEEEEecccccccCCch
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG-EEKPANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRG 926 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~-~~~~~~Ivv~T~e~~~~l~~~~~lViDEah~~~d~~rg 926 (1269)
+.++++++||...+.++.++.. .++.-+..-....... ...... ..+.+++||||+-++..
T Consensus 46 g~~v~~~apT~~Aa~~L~~~~~---~~a~Ti~~~l~~~~~~~~~~~~~-----------~~~~~vliVDEasmv~~---- 107 (196)
T PF13604_consen 46 GKRVIGLAPTNKAAKELREKTG---IEAQTIHSFLYRIPNGDDEGRPE-----------LPKKDVLIVDEASMVDS---- 107 (196)
T ss_dssp T--EEEEESSHHHHHHHHHHHT---S-EEEHHHHTTEECCEECCSSCC------------TSTSEEEESSGGG-BH----
T ss_pred CCeEEEECCcHHHHHHHHHhhC---cchhhHHHHHhcCCccccccccc-----------CCcccEEEEecccccCH----
Confidence 6889999999999999887753 2221111100000000 000001 56677999999999953
Q ss_pred hHHHHHHhccCc--ceEEEEeecCCh
Q psy12699 927 WAWTRALLGLMA--KEIHVCGEAGAV 950 (1269)
Q Consensus 927 ~~~~~~ll~l~~--~~~~l~~s~~~~ 950 (1269)
..+..++..... ..+.++|.....
T Consensus 108 ~~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 108 RQLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp HHHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred HHHHHHHHHHHhcCCEEEEECCcchh
Confidence 234444444433 356677765543
No 246
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.27 Score=62.32 Aligned_cols=100 Identities=17% Similarity=0.057 Sum_probs=64.2
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHh---cCCcEEEEcchHHHH----HHHHHHHhccCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFL---SAESGVYCGPLKMLA----TEVFKKSNDRGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~---~~~~~lil~Ptr~La----~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+.-...-+.-+.||-|||+++ +.+.+ .++.+-++..--=|| .++..-++-+|..+++...+....+++..-.
T Consensus 90 i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~ 169 (822)
T COG0653 90 IVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYA 169 (822)
T ss_pred hhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHh
Confidence 344566788999999999988 32222 244444444433333 3444445567888888777665444444448
Q ss_pred CCEEEEccccc-------c--------CCCCeeEEEEeccccc
Q psy12699 893 ANHVACTVEMT-------S--------VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 893 ~~Ivv~T~e~~-------~--------~l~~~~~lViDEah~~ 920 (1269)
+||..+|..-+ + ......+.|+||+|-+
T Consensus 170 ~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 170 CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 99999993311 1 1557999999999976
No 247
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.69 E-value=0.052 Score=52.42 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=47.4
Q ss_pred HHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 296 IMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 296 ~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
...++++.+.......-.+..+.++++|+++|||+. +..+++|+++++.|+.+..
T Consensus 54 ~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~l-s~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 54 WLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPV-SPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHh
Confidence 445788888877777777999999999999999965 9999999999999998754
No 248
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.66 E-value=0.015 Score=55.84 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHhhhccccccccchhHHHHHHH-hHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 135 PFIYLGNMVFGLGGTKELSLPMFTMLRR-FSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 135 ~l~~~~~~~~~~~sL~~is~s~~~~i~~-~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
-+++.++.++...+++.+|++.+..+.+ ..-+.+.++++++++|++++.++++++++++|++++-.
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456777777788999999999888854 78899999999999999999999999999999988754
No 249
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.58 E-value=0.014 Score=66.80 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=40.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c-CC-----cEEEEcchHHHHHHHHHHHhcc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S-AE-----SGVYCGPLKMLATEVFKKSNDR 871 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~-~~-----~~lil~Ptr~La~Qi~~~l~~~ 871 (1269)
+.+|+++++.||||+|||++++...+ . +. +++|+.+|..+..|....+++.
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46688999999999999998854432 1 33 7999999999999988777654
No 250
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.58 E-value=0.014 Score=66.80 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=40.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c-CC-----cEEEEcchHHHHHHHHHHHhcc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S-AE-----SGVYCGPLKMLATEVFKKSNDR 871 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~-~~-----~~lil~Ptr~La~Qi~~~l~~~ 871 (1269)
+.+|+++++.||||+|||++++...+ . +. +++|+.+|..+..|....+++.
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46688999999999999998854432 1 33 7999999999999988777654
No 251
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.54 E-value=0.02 Score=54.42 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=57.6
Q ss_pred hHHHHHHHhhhccccccccchhHHHHHHH-hHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeee
Q psy12699 134 LPFIYLGNMVFGLGGTKELSLPMFTMLRR-FSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAA 199 (1269)
Q Consensus 134 ~~l~~~~~~~~~~~sL~~is~s~~~~i~~-~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~ 199 (1269)
..+++..+.++...+++.+|++.+..+-. ...+.+.+.++++++|++++.+++++.++++|++..-
T Consensus 35 ~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 35 TVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 34557778888888999999999877766 7789999999999999999999999999999998764
No 252
>KOG0391|consensus
Probab=95.47 E-value=0.044 Score=69.33 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=48.6
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCC
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSL 1118 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~ 1118 (1269)
+|+--.-+.|....++|+..+++|+........+++|--.+.|||+ ++|+||+||.
T Consensus 1299 HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1299 HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 4555666789999999999999999435567889999999999999 9999999996
No 253
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.41 E-value=0.035 Score=70.35 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=26.2
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNS 835 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGs 835 (1269)
...++.||+|+|||+.....+ .. .+..|+.+++++||+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii-~~--~~~~g~~VLv~a~sn~ 212 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELI-RQ--LVKRGLRVLVTAPSNI 212 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHH-HH--HHHcCCCEEEEcCcHH
Confidence 567899999999998743322 21 1345778888888763
No 254
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.38 E-value=0.023 Score=54.19 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccccccccchhHHHHHHH-hHHHHHHHHHHHHhcccCCcceehhhHHHhhhceee
Q psy12699 135 PFIYLGNMVFGLGGTKELSLPMFTMLRR-FSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIA 198 (1269)
Q Consensus 135 ~l~~~~~~~~~~~sL~~is~s~~~~i~~-~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~ 198 (1269)
.+++.++.++...+++++|++.+..+-. ...+.+.+.++++++|++++.+++++.++++|++..
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4456777888888999999999877665 668999999999999999999999999999999764
No 255
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=95.28 E-value=0.065 Score=69.11 Aligned_cols=47 Identities=13% Similarity=-0.082 Sum_probs=36.1
Q ss_pred cCCceEEeccCCCCchHHHHHHHhc------CCcEEEEcchHHHHHHHHHHHh
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERFLS------AESGVYCGPLKMLATEVFKKSN 869 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l~~------~~~~lil~Ptr~La~Qi~~~l~ 869 (1269)
+..++.+.++||+|||.+++..++. ..+.+|++|+.+.-..+.+-++
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhh
Confidence 3467899999999999988555443 4678999999988777765543
No 256
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.27 E-value=0.83 Score=54.57 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=38.8
Q ss_pred CceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCc--ccccccc-CceEEEEcCC
Q psy12699 1064 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDA--IGMGLNL-SIRRVIFYSL 1118 (1269)
Q Consensus 1064 gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv--~~~GIDi-~v~~VI~~~~ 1118 (1269)
+++.+.+|.-.++.+-.+.-..|. +|+.+||+-|.= .=+=..| +|++||+|++
T Consensus 324 ~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~TER~HFfrRy~irGi~~viFY~~ 379 (442)
T PF06862_consen 324 NISFVQISEYTSNSDISRARSQFF--HGRKPILLYTERFHFFRRYRIRGIRHVIFYGP 379 (442)
T ss_pred CCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEEhHHhhhhhceecCCcEEEEECC
Confidence 334555666666666666668899 899999999952 2233567 8999999999
No 257
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.022 Score=53.43 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=56.4
Q ss_pred hHHHHHHHhhhccccccccchhHHHHHHH-hHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeee
Q psy12699 134 LPFIYLGNMVFGLGGTKELSLPMFTMLRR-FSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200 (1269)
Q Consensus 134 ~~l~~~~~~~~~~~sL~~is~s~~~~i~~-~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~ 200 (1269)
.-+++.++..+...+++++|++.+..+-. ...+.+.+.++++++|+.++.+++++.++++|++..-.
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34456777788888999999999776655 45899999999999999999999999999999987543
No 258
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.07 E-value=0.096 Score=52.66 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHH
Q psy12699 209 GYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCM 288 (1269)
Q Consensus 209 G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~ 288 (1269)
.+++++++.++.++...+..++- +. --+|+.-.+.+...+++.+..+.++.++. +. . .......| ....|++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~-~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~-~--~~~~~p~w--~~lGG~l 73 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLG-KA-LGSPLVASFISFGVGFILLLIILLITGRP-SL-A--SLSSVPWW--AYLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-hCccHHHHHHHHHHHHHHHHHHHHHhccc-cc-c--hhccCChH--HhccHHH
Confidence 35678888888888888888743 22 22589999999999999888887777653 11 1 11111222 3348888
Q ss_pred HHHHHHHHHHhhhccCccchhhhhhhHHHHHHH-HHhh-cc--Ccccccccceeehhhhhhhhhh
Q psy12699 289 GFILNYSIMLCTQYNSALTTTIIGCLKNILLTY-LGMF-IG--GDYVYSVNNFIGINISIIGSIL 349 (1269)
Q Consensus 289 ~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~l-ls~l-~f--ge~~~s~~~~iG~~iil~G~~l 349 (1269)
+...-.+..+.+++.++.....+.....++..+ +..+ +| ...++++..++|++++++|+++
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 888888888899999999888777666665543 3332 23 2346689999999999999864
No 259
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.02 E-value=0.095 Score=56.20 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCCEEEEcccccc-CCCCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeecCCh
Q psy12699 892 PANHVACTVEMTS-VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEAGAV 950 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~-~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~~~~ 950 (1269)
...|-+..+..+. .--+-.++|+||||.+.- ..+..++.++.. ..+.++|.....
T Consensus 102 ~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~----~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 102 NGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP----EELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp TTSEEEEEGGGGTT--B-SEEEEE-SGGG--H----HHHHHHHTTB-TT-EEEEEE-----
T ss_pred cCeEEEEehhhhcCccccceEEEEecccCCCH----HHHHHHHcccCCCcEEEEecCceee
Confidence 4567777766443 212349999999999943 245555555543 456677755544
No 260
>KOG1582|consensus
Probab=94.92 E-value=0.12 Score=55.70 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=106.0
Q ss_pred hhhhhhhccCCCC-hhHHHHHHHHHHHHHHHHHHHHcCcccc----CCCChhhhhhhchhhHHHHHHHhhhhhcccccCc
Q psy12699 608 IVNKSVLTSYVFP-SFKIVALGQLLTTVVVLYVGKKLRFIQF----PNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSL 682 (1269)
Q Consensus 608 ~~NK~~l~~~~f~-~~~~l~~~q~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~p~~~~~~~~i~~~~~sl~~~sV 682 (1269)
.+-.++++..+|. +--.+|+.|+++-.. +|++.. ++-....+|.-.-++.+-++++.++|.||.|+|-
T Consensus 60 y~qElif~~~gfkp~GWylTlvQf~~Ysg-------~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNY 132 (367)
T KOG1582|consen 60 YLQELIFNVEGFKPFGWYLTLVQFLVYSG-------FGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNY 132 (367)
T ss_pred HHHHHHhccccCcccchHHHHHHHHHHHh-------hhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccC
Confidence 3456677777765 555599999985332 333331 1222255777788899999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCC----Cccee--hhhhHhhcCcCcccchHhHH
Q psy12699 683 PMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSL----PVDLH--VVLSDIIQGAGHVDDMFPYY 755 (1269)
Q Consensus 683 ~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~----~f~~~--~~l~~i~~~~~~v~~~~~~~ 755 (1269)
|.--++|++-.+=++++..++-|+++++--+.+... ++|-.+-+..|- +||+- +|++..+.. |...-+.
T Consensus 133 PtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~----DA~iGNv 208 (367)
T KOG1582|consen 133 PTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLA----DAVIGNV 208 (367)
T ss_pred cHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHH----HHHhhHH
Confidence 999999999999999999999999999998887777 599888888775 45552 444433322 3344444
Q ss_pred HHHHHhhCCCC
Q psy12699 756 LRHAKQMFPHL 766 (1269)
Q Consensus 756 l~~~k~~~p~~ 766 (1269)
.+.+-+++|.-
T Consensus 209 QEk~m~~~~~s 219 (367)
T KOG1582|consen 209 QEKAMKMNPAS 219 (367)
T ss_pred HHHHHhhCCCC
Confidence 45566677743
No 261
>PRK06526 transposase; Provisional
Probab=94.07 E-value=0.1 Score=58.32 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=43.8
Q ss_pred cccCCceEEeccCCCCchHHHH----HHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL----ERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l----~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+-.++++++.+|+|+|||..+. .+...+.++++ ....+|..++..... .|.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~l~~~~~---------~~~--------------- 149 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVARLAAAHH---------AGR--------------- 149 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHHHHHHHh---------cCc---------------
Confidence 4567899999999999998772 22233555544 344445555432210 000
Q ss_pred EEccccccCCCCeeEEEEecccccc
Q psy12699 897 ACTVEMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 897 v~T~e~~~~l~~~~~lViDEah~~~ 921 (1269)
..+.+..+.+++++||||+|...
T Consensus 150 --~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 150 --LQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred --HHHHHHHhccCCEEEEcccccCC
Confidence 00122235678999999999873
No 262
>PRK04296 thymidine kinase; Provisional
Probab=93.98 E-value=0.022 Score=60.85 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=15.5
Q ss_pred eEEEEECCCCCCcchHHHHHH
Q psy12699 794 RIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.++++.||+|+|||+.++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~ 23 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRA 23 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHH
Confidence 467888888888888755444
No 263
>PRK08181 transposase; Validated
Probab=93.96 E-value=0.11 Score=58.31 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=46.5
Q ss_pred cccCCceEEeccCCCCchHHHH----HHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL----ERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l----~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+-.++++++.+|+|+|||+.+. .+..++.++ +..+..+|..++.....+ +
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v-~f~~~~~L~~~l~~a~~~---------~---------------- 156 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRV-LFTRTTDLVQKLQVARRE---------L---------------- 156 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCce-eeeeHHHHHHHHHHHHhC---------C----------------
Confidence 3467899999999999998762 122334455 444566777766433210 0
Q ss_pred EEcc-ccccCCCCeeEEEEecccccc
Q psy12699 897 ACTV-EMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 897 v~T~-e~~~~l~~~~~lViDEah~~~ 921 (1269)
+. +.+..+.+++++||||.+...
T Consensus 157 --~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 157 --QLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred --cHHHHHHHHhcCCEEEEecccccc
Confidence 11 123346788999999999873
No 264
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.95 E-value=0.11 Score=58.02 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=54.1
Q ss_pred cccCCceEEeccCCCCchHHH---HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA---LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~---l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
+..++++++.+|+|+|||+.+ -..+.+.+.-++.+++.+|+.++......
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~--------------------------- 154 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE--------------------------- 154 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc---------------------------
Confidence 347899999999999999877 22333556778888999999998887753
Q ss_pred Eccc--cccCCCCeeEEEEeccccc
Q psy12699 898 CTVE--MTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 898 ~T~e--~~~~l~~~~~lViDEah~~ 920 (1269)
++.+ ....+.+++++||||.=..
T Consensus 155 ~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 155 GRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred CchHHHHHHHhhcCCEEEEecccCc
Confidence 1111 2334789999999998765
No 265
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=93.81 E-value=0.43 Score=53.16 Aligned_cols=127 Identities=11% Similarity=0.165 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHHHHHHh
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNM 142 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (1269)
+.+...++-.+.+.....+.|+. +.+ ++...+-|.+..++...++.... +.+...+..++. +..|+++.+..
T Consensus 138 kgi~~Ll~stigy~~Y~~~~~~~----~~~-~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~n-il~G~~w~ign 209 (269)
T PF06800_consen 138 KGILALLISTIGYWIYSVIPKAF----HVS-GWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKN-ILTGLIWGIGN 209 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----CCC-hhHhHHHHHHHHHHHHHHHhhcc--cccccccchHHh-hHHHHHHHHHH
Confidence 33444444444445555566653 222 22333444443333333333222 112223333333 45688888888
Q ss_pred hhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCccee----hhhHHHhhhcee
Q psy12699 143 VFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVK----ITVGMMIGGAVI 197 (1269)
Q Consensus 143 ~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~----~~i~l~~~Gv~l 197 (1269)
.++..|.+...++.+..+..+.++...+.+.+++||+-+++++ ++++++++|.++
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999888865 566666666654
No 266
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.69 E-value=0.55 Score=51.51 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=58.4
Q ss_pred hhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhcee
Q psy12699 133 PLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVI 197 (1269)
Q Consensus 133 ~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l 197 (1269)
...+..+....+-++.++|.+..+.+++..+.++++.++++++++++++...|+|+.+++.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33455677777888999999999999999999999999999999999999999999999999865
No 267
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=0.15 Score=65.99 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=35.4
Q ss_pred HhHHHHhhhccC--CCCCeeEEEEc--Ccccccccc---CceEEEEcCCCCC
Q psy12699 1077 TTKLAQASKFND--PDNPCKVMVAT--DAIGMGLNL---SIRRVIFYSLIKP 1121 (1269)
Q Consensus 1077 ~eR~~v~~~F~~--~~g~~~VLVaT--dv~~~GIDi---~v~~VI~~~~~k~ 1121 (1269)
.+++++++.|+. ..++-.||+|+ ..+..|||+ ..+.||..+++.+
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~ 616 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYE 616 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCC
Confidence 467888899961 13455699999 899999999 4899999998653
No 268
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=93.41 E-value=0.18 Score=49.06 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=45.0
Q ss_pred HhhhccCc-cchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 298 LCTQYNSA-LTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 298 ~~i~~~s~-~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
.++++.+- +.+++..-+..+.++++|+++|+|+ +++.+++|++++++|++......
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~-~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDES-LSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhcCC
Confidence 45555543 3347777789999999999999995 59999999999999999876544
No 269
>PF13245 AAA_19: Part of AAA domain
Probab=93.41 E-value=0.1 Score=46.64 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=29.3
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhh--cccccCCceEEeccCC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAE--SGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~--~~l~~g~~vlv~apTG 834 (1269)
.+.+++.||+|||||+.++....... .... ++++++.+||+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~ 52 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTR 52 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCH
Confidence 56677899999999987555543322 1122 88999999985
No 270
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=93.35 E-value=0.5 Score=51.01 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCChhhhHhhhhhHHH-HHHH
Q psy12699 63 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFI-YLGN 141 (1269)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 141 (1269)
.++.+++.-+.++....+..|.+-.. -+....+..-....+.+++++....... .-+++.....-+..+++ ..+=
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhcccc
Confidence 34455566666666666666766531 2223334444444444444443221110 01122222222222222 1333
Q ss_pred hhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeee
Q psy12699 142 MVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAA 199 (1269)
Q Consensus 142 ~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~ 199 (1269)
..+-..++..+|...+.++.++.|.+-.+.++++++|.+++.+|++++.++++++=.+
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 4455669999999999999999999999999999999999999999999988876433
No 271
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.33 E-value=0.28 Score=58.10 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=49.5
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHH-hcCCcEEEEc--chHHHHHHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERF-LSAESGVYCG--PLKMLATEVFKKS 868 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l-~~~~~~lil~--Ptr~La~Qi~~~l 868 (1269)
+.++++++||||+|||+.+. .+.... .... ..+.++.++. +.|.-+.++.+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~a-KLA~~~-----------------------~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~ 228 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIA-KLAAIY-----------------------GINSDDKSLNIKIITIDNYRIGAKKQIQTY 228 (388)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHH-----------------------HhhhccCCCeEEEEeccCccHHHHHHHHHH
Confidence 34688999999999999732 220000 0000 1234444444 7777777666665
Q ss_pred hc-cCCCceeeecceeeeccCCCCCCCEEEEccccccCCCCeeEEEEecccccc
Q psy12699 869 ND-RGTPCDLITGEEKKFIQGEEKPANHVACTVEMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 869 ~~-~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~~l~~~~~lViDEah~~~ 921 (1269)
.+ .|.++....... ++ .+.+..+.++++++||++.+..
T Consensus 229 a~~lgvpv~~~~~~~-----------~l----~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 229 GDIMGIPVKAIESFK-----------DL----KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred hhcCCcceEeeCcHH-----------HH----HHHHHHhCCCCEEEEcCCCCCc
Confidence 43 555432111000 00 0122235789999999999884
No 272
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=93.32 E-value=0.43 Score=45.89 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=46.1
Q ss_pred HhhhccCcc-chhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 298 LCTQYNSAL-TTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 298 ~~i~~~s~~-t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
.++++.+-. .+++..-+..+.++++|+++|+|+ +++.+++|++++++|++..+...
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~-~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 456666543 447778889999999999999995 59999999999999999986543
No 273
>KOG2234|consensus
Probab=93.22 E-value=1.1 Score=51.02 Aligned_cols=142 Identities=12% Similarity=0.064 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhh--HHH---HhhcccchHHHHHHHHHH
Q psy12699 212 FVLLNNFLTAVNGVYTKKKL-DPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDY--AKV---LEYEYLWDMWFQIQFILS 285 (1269)
Q Consensus 212 l~l~s~~~~a~~~v~~k~~l-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~ll~~ 285 (1269)
.+++..+..+......+..- .++.+..|.+..+..=++-.++++...+..+.. ... .....+.++.-...+...
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 33344444444444444311 112345677777777666666666655544211 111 011111122122345566
Q ss_pred HHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 286 CCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 286 ~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
+++-.+-|...|.+..+.+|.++.+...+|.+.+.+++++++++. ++..||...++.+.|+.+..+..
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rk-Ls~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRK-LSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhccC
Confidence 667777777788899999999999999999999999999999994 59999999999999999988444
No 274
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.13 E-value=0.13 Score=47.95 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=34.6
Q ss_pred HHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhcccCCcceehhhHHH
Q psy12699 136 FIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLHIVPNRSVKITVGMM 191 (1269)
Q Consensus 136 l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~ek~~~~~~~~i~l~ 191 (1269)
.++.++.++...+++++|++.+..+ ..+..+.+.+.+.++++|++++.+++++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3578888888999999999998665 4588999999999999999999999998874
No 275
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.94 E-value=0.092 Score=58.03 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHHH
Q psy12699 209 GYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCM 288 (1269)
Q Consensus 209 G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v~ 288 (1269)
|++.+++|+++++...+=.|+ . ...+++-.+++++....+..+++.++.+. +. ++.+-.++|.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~-~---~~gDg~~fQw~~~~~i~~~g~~v~~~~~~-p~-----------f~p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKK-F---DTGDGFFFQWVMCSGIFLVGLVVNLILGF-PP-----------FYPWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEe-c---cCCCcHHHHHHHHHHHHHHHHHHHHhcCC-Cc-----------ceeHHHhhhhh
Confidence 677889999999999888887 3 23577888888887777777666555432 11 11223445555
Q ss_pred HHHHHHHHHHhhhccC-ccchhhhhhhHHHHHHHHHhh-ccCcc----cccccceeehhhhhhhhhhhhhhccCCC
Q psy12699 289 GFILNYSIMLCTQYNS-ALTTTIIGCLKNILLTYLGMF-IGGDY----VYSVNNFIGINISIIGSILYTIVTFKPA 358 (1269)
Q Consensus 289 ~~~~~~~~~~~i~~~s-~~t~sv~~~lk~v~~~lls~l-~fge~----~~s~~~~iG~~iil~G~~l~~~~~~~~~ 358 (1269)
-...|.+..-+++..+ ++-..+.+...-+.....|-+ +||.+ .-.+.+++|++++++|..+|...|...+
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 5555555555555554 233345555555555555533 56542 2257899999999999999988776553
No 276
>PRK08727 hypothetical protein; Validated
Probab=92.92 E-value=0.24 Score=54.78 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=13.2
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
+.+++++||||+|.+.
T Consensus 91 l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 91 LEGRSLVALDGLESIA 106 (233)
T ss_pred HhcCCEEEEeCccccc
Confidence 4566799999999985
No 277
>PRK10536 hypothetical protein; Provisional
Probab=92.85 E-value=0.13 Score=56.66 Aligned_cols=52 Identities=15% Similarity=0.092 Sum_probs=28.4
Q ss_pred CCEEEEcccccc-CCCCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeecC
Q psy12699 893 ANHVACTVEMTS-VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEAG 948 (1269)
Q Consensus 893 ~~Ivv~T~e~~~-~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~~ 948 (1269)
..|.+.....+. .--+-+++|+||||++.. .....++..+.. ..+.++|...
T Consensus 160 ~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 160 GKVEIAPFAYMRGRTFENAVVILDEAQNVTA----AQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred CcEEEecHHHhcCCcccCCEEEEechhcCCH----HHHHHHHhhcCCCCEEEEeCChh
Confidence 346666655332 222448999999999943 233344444433 2445556443
No 278
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.79 E-value=0.17 Score=50.10 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=10.7
Q ss_pred eEEEEecccccc
Q psy12699 910 EVAVIDEIQMMR 921 (1269)
Q Consensus 910 ~~lViDEah~~~ 921 (1269)
.++||||+|++.
T Consensus 89 ~~lviDe~~~l~ 100 (131)
T PF13401_consen 89 VLLVIDEADHLF 100 (131)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEeChHhcC
Confidence 799999999983
No 279
>KOG3912|consensus
Probab=92.74 E-value=0.42 Score=52.08 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=77.0
Q ss_pred hhhhchhhHHHHHHHhhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHH-hhhheeeeccCCCcce
Q psy12699 656 FFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYI-SFRRYCLETQSLPVDL 734 (1269)
Q Consensus 656 ~~~~~p~~~~~~~~i~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~-~~g~~~~~~~d~~f~~ 734 (1269)
.+.++|.+++=...-...+..|-+-+-+-||++|...++|+.+++..+++++....-|+++.. +.|.++.++.|+.-.-
T Consensus 86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~ 165 (372)
T KOG3912|consen 86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT 165 (372)
T ss_pred cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence 556788899999999999999999999999999999999999999999999999999999998 7999999998875432
Q ss_pred --ehhhhHhhcC
Q psy12699 735 --HVVLSDIIQG 744 (1269)
Q Consensus 735 --~~~l~~i~~~ 744 (1269)
..-.++++++
T Consensus 166 ~p~~d~s~iitG 177 (372)
T KOG3912|consen 166 DPYTDYSSIITG 177 (372)
T ss_pred CCccccccchhh
Confidence 3445566555
No 280
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.66 E-value=0.13 Score=66.09 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.9
Q ss_pred hHHHHhhhccC--CCCCeeEEEEcCcccccccc---CceEEEEcCCCCC
Q psy12699 1078 TKLAQASKFND--PDNPCKVMVATDAIGMGLNL---SIRRVIFYSLIKP 1121 (1269)
Q Consensus 1078 eR~~v~~~F~~--~~g~~~VLVaTdv~~~GIDi---~v~~VI~~~~~k~ 1121 (1269)
.|.++++.|++ .+++-.||++|..+..|||+ ..++||..+++.+
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCC
Confidence 46667766651 04667899999999999999 3799999998654
No 281
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.51 Score=44.54 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=46.8
Q ss_pred HhhhccCc-cchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhh
Q psy12699 298 LCTQYNSA-LTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIV 353 (1269)
Q Consensus 298 ~~i~~~s~-~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~ 353 (1269)
.++|+.+- +.+++..-+..+.+++.|+++|+|+ ++...++|+++++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~-l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGES-LSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc-CCHHHHHHHHHHHHHHHHhhhc
Confidence 46676654 4459999999999999999999994 5999999999999999987654
No 282
>KOG0058|consensus
Probab=92.51 E-value=0.47 Score=58.89 Aligned_cols=219 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred HHHHHhhhhcccccchhhHHHHHH--h-hhheeeeccCCCcceehhhhHhhcCcCcccchHhHHHHHHHhhCCCCCcccc
Q psy12699 695 MTMIAEYYVLHIVPNRYLQHQAYI--S-FRRYCLETQSLPVDLHVVLSDIIQGAGHVDDMFPYYLRHAKQMFPHLDCMDD 771 (1269)
Q Consensus 695 ~~~~~~~~~~~~~~s~~~~~s~~~--~-~g~~~~~~~d~~f~~~~~l~~i~~~~~~v~~~~~~~l~~~k~~~p~~~~~~~ 771 (1269)
...++.+++.....+..-+.|.++ + .|..+... ...++.+.++.+...-+|.+.-|.=+=.+.....++.
T Consensus 389 iL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~l-------s~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~ 461 (716)
T KOG0058|consen 389 ILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGL-------SSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDH 461 (716)
T ss_pred HHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcchHHHHHHHhccCCCCCCCCcccccc
Confidence 344566666666666666666665 3 55544433 3668888888888887777655422211111112223
Q ss_pred cccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHH--HHHHhcCC
Q psy12699 772 LKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHA--LERFLSAE 849 (1269)
Q Consensus 772 l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~--l~~l~~~~ 849 (1269)
++...++++-.-.||..... +.++-+ . -.+-.|+.+.+++|.|+|||.++ +.+++...
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~-----------------~Vlk~l--s-fti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt 521 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDV-----------------PVLKNL--S-FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT 521 (716)
T ss_pred ccceEEEEEeeeecCCCCCc-----------------hhhcCc--e-eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 44444444433445522110 000000 0 01233445555566666665544 44445532
Q ss_pred cEEEE---cchHHHHHHHHHHHhc-cCCCc---------eeeecceeeeccC----------------CCCCCCEEEEcc
Q psy12699 850 SGVYC---GPLKMLATEVFKKSND-RGTPC---------DLITGEEKKFIQG----------------EEKPANHVACTV 900 (1269)
Q Consensus 850 ~~lil---~Ptr~La~Qi~~~l~~-~g~~v---------~~~~G~~~~~~~~----------------~~~~~~Ivv~T~ 900 (1269)
.+=|+ .|.+++-.+..++--. -+... .+.+|-....+++ -..+.+=.|+..
T Consensus 522 sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 522 SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred CCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCc
Confidence 23233 2777776666553211 11111 1122221110000 001222233322
Q ss_pred c-ccc------------CCCCeeEEEEecccccccCCchhHHHHHHhccCcce
Q psy12699 901 E-MTS------------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKE 940 (1269)
Q Consensus 901 e-~~~------------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~ 940 (1269)
. .++ ++++-.++|+|||---+|.+-....++++..+..++
T Consensus 602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654 (716)
T ss_pred cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC
Confidence 1 111 378899999999998888887777788876665543
No 283
>KOG1805|consensus
Probab=92.47 E-value=0.19 Score=63.40 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCceEEeccCCCCchHHH---HHHH-hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC-----------
Q psy12699 824 GPLKIHAGPTNSGKTYHA---LERF-LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG----------- 888 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~---l~~l-~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~----------- 888 (1269)
..-.++.+=+|+|||... +..+ ..+++++..+=|...+..+.-+++.+++...-+..+++..++-
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ 764 (1100)
T KOG1805|consen 685 EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSE 764 (1100)
T ss_pred cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccch
Confidence 444677788888887554 3332 3489999999999999999999988776422111121111110
Q ss_pred --------CCCCCCEEEEc----cccccCCCCeeEEEEecccccc
Q psy12699 889 --------EEKPANHVACT----VEMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 889 --------~~~~~~Ivv~T----~e~~~~l~~~~~lViDEah~~~ 921 (1269)
.-.++.||.|| .+-+...+++|+.|||||-.+.
T Consensus 765 ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 765 KSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccc
Confidence 01167888888 3333447789999999998884
No 284
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=92.43 E-value=0.13 Score=53.43 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.5
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccC--CceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCG--PLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g--~~vlv~apTG 834 (1269)
+++.+++.||||+|||+.++..++... .++ ..+++..||.
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~---~~~~~~~~lii~P~~ 54 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRL---QEGKDARVLIIVPTR 54 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTSSSEEEEEESSH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhh---ccCCCceEEEEeecc
Confidence 457789999999999999877775543 333 3788888875
No 285
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.43 E-value=0.32 Score=48.54 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.4
Q ss_pred CCCeeEEEEeccccc
Q psy12699 906 NIPYEVAVIDEIQMM 920 (1269)
Q Consensus 906 l~~~~~lViDEah~~ 920 (1269)
..+..++|+||+|.+
T Consensus 82 ~~~~~~lilDe~~~~ 96 (151)
T cd00009 82 KAKPGVLFIDEIDSL 96 (151)
T ss_pred cCCCeEEEEeChhhh
Confidence 345679999999988
No 286
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.39 E-value=0.13 Score=66.11 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=38.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-----CCcEEEEcchHHHHHHHHHHHh
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-----AESGVYCGPLKMLATEVFKKSN 869 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-----~~~~lil~Ptr~La~Qi~~~l~ 869 (1269)
+.+++.+++.||||+|||+.++.+... +++++|..+|+.|-.|+.++..
T Consensus 31 ~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 31 LKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred HcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 455666999999999999988544433 5889999999999999986653
No 287
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.06 E-value=0.73 Score=56.93 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=67.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhcc
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDR 871 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~ 871 (1269)
+.|-.+.+-|=-.|||+.....+ .++.....+.++++.+|.+.-++++++++..+
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI-------------------------~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~ 307 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLI-------------------------ALALATFRGIKIGYTAHIRKATEPVFEEIGAR 307 (738)
T ss_pred hccceEEEecccCCchhhHHHHH-------------------------HHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 34445566677788888633222 11112235889999999999999999888652
Q ss_pred ------CCCceeeecceeeeccCCCCCCCEEEEcccc--ccCCCCeeEEEEecccccccCCchhHHHHHH
Q psy12699 872 ------GTPCDLITGEEKKFIQGEEKPANHVACTVEM--TSVNIPYEVAVIDEIQMMRDITRGWAWTRAL 933 (1269)
Q Consensus 872 ------g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~--~~~l~~~~~lViDEah~~~d~~rg~~~~~~l 933 (1269)
+..+..+.|+.....-.......|.+++-.. --.-..++++|+|||+.+.++ .+..++
T Consensus 308 le~~f~~~~v~~vkGe~I~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~----al~~il 373 (738)
T PHA03368 308 LRQWFGASRVDHVKGETISFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD----AVQTIM 373 (738)
T ss_pred HhhhcchhheeeecCcEEEEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH----HHHHHH
Confidence 1123344553221111112224677774321 123558999999999999763 454444
No 288
>KOG4510|consensus
Probab=91.99 E-value=0.15 Score=55.04 Aligned_cols=83 Identities=7% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHhhcccccCCCChhhhHhhhhhHHHHHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHH
Q psy12699 112 GKKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMM 191 (1269)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~ 191 (1269)
+...+..+.|. ..++++.+..+|++.++.+.+-..+++.=-++-..+++.+-.+|.++...+|+++.+++..|.|.+++
T Consensus 238 ~~~ig~~~lP~-cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~v 316 (346)
T KOG4510|consen 238 CASIGAVQLPH-CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMV 316 (346)
T ss_pred HhhccceecCc-cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeee
Confidence 33344455555 66667777888999999999999999998888889999999999999999999999999998877665
Q ss_pred hhhc
Q psy12699 192 IGGA 195 (1269)
Q Consensus 192 ~~Gv 195 (1269)
+...
T Consensus 317 vsS~ 320 (346)
T KOG4510|consen 317 VSST 320 (346)
T ss_pred ehhH
Confidence 5443
No 289
>PRK11431 multidrug efflux system protein; Provisional
Probab=91.72 E-value=0.78 Score=43.66 Aligned_cols=54 Identities=9% Similarity=0.149 Sum_probs=45.7
Q ss_pred HhhhccCc-cchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 298 LCTQYNSA-LTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 298 ~~i~~~s~-~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
.+++..+- +.+++..-+..+.++++|+++|+|+. ++.+++|+++++.|++..+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~-~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA-SPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHhhhc
Confidence 45666654 45589999999999999999999954 99999999999999998653
No 290
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=91.72 E-value=0.43 Score=54.72 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHH
Q psy12699 205 YNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFIL 284 (1269)
Q Consensus 205 ~~~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 284 (1269)
.+..|++++++|+++.++-.+++|+-..+..+ +...-- .+ ......++.+|..++.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~------------------~~-----~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG------------------SG-----GRSYLRRPLWWIGLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc------------------ch-----hhHHHhhHHHHHHHHH
Confidence 45789999999999999999999995422221 000000 00 0000112222333332
Q ss_pred HHHHHHHHHHHHHHhhhccCccchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhh
Q psy12699 285 SCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352 (1269)
Q Consensus 285 ~~v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~ 352 (1269)
. +++.. ..+.++...++..++.++.+..++..+++.++++|+ ++...++|.++++.|..+...
T Consensus 60 ~-~~g~~---~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~-~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 M-VLGEI---LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEK-LTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred H-hcchH---HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhccc-chHhHHhhHHHHHhhheeeEE
Confidence 2 22333 345577888888899999999999999999999995 599999999999999987654
No 291
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=91.40 E-value=0.84 Score=43.72 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=44.7
Q ss_pred HhhhccCc-cchhhhhhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 298 LCTQYNSA-LTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 298 ~~i~~~s~-~t~sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
.++++.+- +.+++..-+..+.+++.|+++|+|+. ++.+++|+++++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~-~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL-NRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHhc
Confidence 45666654 44589999999999999999999954 9999999999999998753
No 292
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.35 E-value=0.16 Score=56.23 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=16.2
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+..+++.+|+|+|||+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999875
No 293
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=91.34 E-value=0.23 Score=66.26 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.2
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
..++....++|+++.++|+...+.|..+++..-.+++|.+.+.|+|+ ..++||.+|. +.+++...
T Consensus 733 ~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~--------------~wnp~~~~ 798 (866)
T COG0553 733 ALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP--------------WWNPAVEL 798 (866)
T ss_pred hcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc--------------ccChHHHH
Confidence 34467889999999999999999999434567788888999999999 9999999998 67889999
Q ss_pred HHhcccCCCCCcccc
Q psy12699 1141 QIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~ 1155 (1269)
|...|+-|.|++..+
T Consensus 799 Qa~dRa~RigQ~~~v 813 (866)
T COG0553 799 QAIDRAHRIGQKRPV 813 (866)
T ss_pred HHHHHHHHhcCccee
Confidence 999999999988766
No 294
>PRK12377 putative replication protein; Provisional
Probab=91.32 E-value=0.3 Score=54.30 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=46.3
Q ss_pred CCceEEeccCCCCchHHH---HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcc
Q psy12699 824 GPLKIHAGPTNSGKTYHA---LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTV 900 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~---l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~ 900 (1269)
..++++.+|+|+|||..+ ...+...+..++..+..+|..++...+.. +. . ..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~---------~~-~---------------~~ 155 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN---------GQ-S---------------GE 155 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc---------cc-h---------------HH
Confidence 367999999999999877 22333333444556767777777655421 00 0 01
Q ss_pred ccccCCCCeeEEEEeccccc
Q psy12699 901 EMTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 901 e~~~~l~~~~~lViDEah~~ 920 (1269)
+.+..+.++++|||||.+..
T Consensus 156 ~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 156 KFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHhcCCCEEEEcCCCCC
Confidence 23445689999999999665
No 295
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.21 E-value=0.35 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=13.7
Q ss_pred CCCeeEEEEecccccccCCchhHHHHHHh
Q psy12699 906 NIPYEVAVIDEIQMMRDITRGWAWTRALL 934 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d~~rg~~~~~~ll 934 (1269)
+.+=+++.|||+|++.. ..++.+.
T Consensus 99 l~~~~ILFIDEIHRlnk-----~~qe~Ll 122 (233)
T PF05496_consen 99 LKEGDILFIDEIHRLNK-----AQQEILL 122 (233)
T ss_dssp --TT-EEEECTCCC--H-----HHHHHHH
T ss_pred cCCCcEEEEechhhccH-----HHHHHHH
Confidence 44566999999999953 4455543
No 296
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.17 E-value=0.37 Score=62.15 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeec
Q psy12699 907 IPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEA 947 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~ 947 (1269)
...+++||||++++.. ..+...+..++. .++.++|..
T Consensus 415 ~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcc
Confidence 4678999999999942 233444454543 355666543
No 297
>PRK06921 hypothetical protein; Provisional
Probab=91.08 E-value=0.32 Score=54.92 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=39.9
Q ss_pred CCceEEeccCCCCchHHH---HHHHhc--CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 824 GPLKIHAGPTNSGKTYHA---LERFLS--AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~---l~~l~~--~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
+.++++.+|+|+|||+.+ ...+.+ +..++| .+..++..++...+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y-~~~~~l~~~l~~~~~~~--------------------------- 168 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY-FPFVEGFGDLKDDFDLL--------------------------- 168 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE-EEHHHHHHHHHHHHHHH---------------------------
Confidence 567888888888888766 222232 444444 45556655554332100
Q ss_pred ccccccCCCCeeEEEEecccc
Q psy12699 899 TVEMTSVNIPYEVAVIDEIQM 919 (1269)
Q Consensus 899 T~e~~~~l~~~~~lViDEah~ 919 (1269)
.+.+..+.+.++|||||.|.
T Consensus 169 -~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 169 -EAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred -HHHHHHhcCCCEEEEecccc
Confidence 01123356889999999976
No 298
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.91 E-value=0.59 Score=51.27 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=15.0
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+.++++.+|+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567888888888888776
No 299
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.89 E-value=1.1 Score=45.10 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSC 286 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 286 (1269)
++..++++++.++..+..-+..++- +. --+|+.-.+.....+++.+..+.+..+.. ..+.......+ | ....|
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~-~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pw--W--~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RY-LGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPW--W--AWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HH-cCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCch--H--HHHcc
Confidence 4567778888888888888877743 22 23678888888888888877776664332 22221111112 2 33456
Q ss_pred HHHHHHHHHHHHhhhccCccchhhhhhhHHHHH-HHH---HhhccCcccccccceeehhhhhhhhhhhh
Q psy12699 287 CMGFILNYSIMLCTQYNSALTTTIIGCLKNILL-TYL---GMFIGGDYVYSVNNFIGINISIIGSILYT 351 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s~~t~sv~~~lk~v~~-~ll---s~l~fge~~~s~~~~iG~~iil~G~~l~~ 351 (1269)
+++..+-+.......+.++.+...+.....++. .++ |++-....+++...++|++++++|+++..
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 777766666667778888877765554444433 332 33333334668999999999999966554
No 300
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=90.83 E-value=0.27 Score=47.17 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=55.6
Q ss_pred HhhhhhHHHHHHHhhhccccccccchhHHHHHH-HhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceee
Q psy12699 129 FELMPLPFIYLGNMVFGLGGTKELSLPMFTMLR-RFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIA 198 (1269)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~sL~~is~s~~~~i~-~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~ 198 (1269)
+.++|+.+ +..+...+++.+...++|.+.-+. +++-+||++.++++++|..++++++|++++++|+.+.
T Consensus 43 ~y~ipf~l-Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLL-NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 34444443 444555677888999999888774 8889999999999999999999999999999999875
No 301
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.78 E-value=0.72 Score=52.10 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=16.6
Q ss_pred EEEECCCCCCcchHHHHHHHhh
Q psy12699 796 IFHAGPTNSGKTYHALERFLSA 817 (1269)
Q Consensus 796 v~~~g~TGsGKT~~al~~~l~~ 817 (1269)
++++|+||.|||+. +++|...
T Consensus 64 lLivG~snnGKT~I-i~rF~~~ 84 (302)
T PF05621_consen 64 LLIVGDSNNGKTMI-IERFRRL 84 (302)
T ss_pred eEEecCCCCcHHHH-HHHHHHH
Confidence 68899999999996 6777543
No 302
>KOG2765|consensus
Probab=90.70 E-value=0.73 Score=52.57 Aligned_cols=142 Identities=14% Similarity=0.016 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHH---HHHHhhcccccCCCChhhhHhhhhhHH
Q psy12699 62 IAKISTALFYALCSLFITIVNKSVLTSY--VFPSFKIVALGQLLTTVVVL---YVGKKLRFIQFPNYHRNIFFELMPLPF 136 (1269)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~nK~~l~~~--~f~~~~~l~~~q~~~~~lll---~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (1269)
+.+-+.+++-++.+....++-|.-..+. +.+.+.+..+...+.-+++- +++...+..+++-.+...+..++..++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 4555555556666666666777777655 46766655444433322222 223333333333223333334444554
Q ss_pred H-HHHHhhhccccccccchhHHHHHHHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecCC
Q psy12699 137 I-YLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDL 203 (1269)
Q Consensus 137 ~-~~~~~~~~~~sL~~is~s~~~~i~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~~ 203 (1269)
+ .+++=+++-+|.-.++.-.+++-.+++.+..++...++.++++++..++|.+.+++|.+++...+.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 4 577888999999999999999999999999999999999999999999999999999998877544
No 303
>KOG0336|consensus
Probab=90.60 E-value=2.1 Score=49.08 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=54.0
Q ss_pred CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 992 DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 992 ~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.+|+|+ ++.-++.+...+.-.|.....+||...+.+|...+..|+ .+....|++||...+|.+++.
T Consensus 467 KvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILvaTDlaSRGlDv~D 533 (629)
T KOG0336|consen 467 KVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRILVATDLASRGLDVPD 533 (629)
T ss_pred eEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEEEEEechhhcCCCchh
Confidence 566677 666788888888888999999999999999998887664 456778889999998877764
No 304
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.56 E-value=3.5 Score=41.51 Aligned_cols=128 Identities=8% Similarity=-0.002 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcc-cccCCCChhhhHhhhhhHHHHHHHhhhc
Q psy12699 67 TALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRF-IQFPNYHRNIFFELMPLPFIYLGNMVFG 145 (1269)
Q Consensus 67 ~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (1269)
.+++-++.-.....+|-.+-+..+- |+.-++..+..+++++.+...... ...+....- .++.+.-|++......+.
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~~gs--~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~-p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKALGS--PLVASFISFGVGFILLLIILLITGRPSLASLSSV-PWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHHhcccccchhccC-ChHHhccHHHHHHHHHHH
Confidence 3444455555555566665555442 333455555555555544332222 122222222 334444678888888888
Q ss_pred cccccccchhHHHHHHHhH-HHHHHHHHHH----HhcccCCcceehhhHHHhhhcee
Q psy12699 146 LGGTKELSLPMFTMLRRFS-ILMTMIAEYY----VLHIVPNRSVKITVGMMIGGAVI 197 (1269)
Q Consensus 146 ~~sL~~is~s~~~~i~~~~-Pift~lls~l----~~~ek~~~~~~~~i~l~~~Gv~l 197 (1269)
.++...+.++..+++.-+. .+..++++.+ .-++++++.++++++++++|+++
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8999999998877666555 5666667764 24678999999999999999864
No 305
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=90.44 E-value=0.29 Score=56.57 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=32.2
Q ss_pred CCceEEeccCCCCchHHHHHHH----h----cCCcEEEEcchHHHHHHHHHHHhc
Q psy12699 824 GPLKIHAGPTNSGKTYHALERF----L----SAESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l----~----~~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
..+++|.|..|||||.+.+.++ . ...+++++++|+..|.++.+++.+
T Consensus 13 ~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 13 EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 4556666666666665552221 1 246899999999999999999975
No 306
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.43 E-value=0.29 Score=63.44 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=36.2
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHhc-----C--CcEEEEcchHHHHHHHHHHHhc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFLS-----A--ESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~~-----~--~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
.+.+|++.++.+|||+|||++.+...++ + .+++|++.|..=..|..+++++
T Consensus 25 ~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 25 SLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred HhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3567888888888888888776433322 2 5788888888777777777654
No 307
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=90.40 E-value=0.92 Score=56.96 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeec
Q psy12699 907 IPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEA 947 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~ 947 (1269)
..++++||||+-++.- ..+..++..++. .++.++|..
T Consensus 258 l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 258 LPLDVLVVDEASMVDL----PLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CcccEEEEcccccCCH----HHHHHHHHhcCCCCEEEEECCh
Confidence 4689999999999832 234455555543 356666533
No 308
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.32 E-value=0.13 Score=63.08 Aligned_cols=46 Identities=17% Similarity=0.042 Sum_probs=32.7
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
..+++++++++||||||||..++.+++...+.-..+...++..||-
T Consensus 37 ~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 37 AILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred HHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 3456788999999999999998777766532111123578888984
No 309
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=90.14 E-value=0.43 Score=60.00 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeec
Q psy12699 907 IPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEA 947 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~ 947 (1269)
..++++||||+-++.- ..+...+..++. .++.++|..
T Consensus 264 l~~dvlIvDEaSMvd~----~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 264 LHLDVLVVDEASMVDL----PMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCCeEEEChHhcccH----HHHHHHHHhcccCCEEEEecch
Confidence 3579999999999821 234455555554 356666543
No 310
>PTZ00110 helicase; Provisional
Probab=90.12 E-value=0.3 Score=61.16 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.1
Q ss_pred EEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1017 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1017 ~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
..+||++++++|...+..|.+ +....|++|+..++|.++..
T Consensus 405 ~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv~~rGIDi~~ 445 (545)
T PTZ00110 405 LCIHGDKKQEERTWVLNEFKT--GKSPIMIATDVASRGLDVKD 445 (545)
T ss_pred EEEECCCcHHHHHHHHHHHhc--CCCcEEEEcchhhcCCCccc
Confidence 346888999999888877865 34567899999999987763
No 311
>PTZ00293 thymidine kinase; Provisional
Probab=90.07 E-value=0.53 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=17.1
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
+++.+++||-+||||+..++.+
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i 25 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLV 25 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHH
Confidence 5677889999999998755544
No 312
>PRK08116 hypothetical protein; Validated
Probab=89.94 E-value=0.84 Score=51.57 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred CceEEeccCCCCchHHH---HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEccc
Q psy12699 825 PLKIHAGPTNSGKTYHA---LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTVE 901 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~---l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e 901 (1269)
..+++.+++|+|||+.+ ...+.+....++..+..++..++...+...+ .. ...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--------~~---------------~~~~ 171 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--------KE---------------DENE 171 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--------cc---------------cHHH
Confidence 44899999999999877 2233323344455566677666655443110 00 0112
Q ss_pred cccCCCCeeEEEEeccccc
Q psy12699 902 MTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 902 ~~~~l~~~~~lViDEah~~ 920 (1269)
....+.+.++|||||.+.-
T Consensus 172 ~~~~l~~~dlLviDDlg~e 190 (268)
T PRK08116 172 IIRSLVNADLLILDDLGAE 190 (268)
T ss_pred HHHHhcCCCEEEEecccCC
Confidence 3344678899999999643
No 313
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=89.75 E-value=0.42 Score=56.67 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=44.3
Q ss_pred cCCceEEeccCCCCchHHH--HHHHhc--CCcEEEEcchHHHHHHH-H-HHHh-ccCCCceeeecceeeeccCCCCCCCE
Q psy12699 823 CGPLKIHAGPTNSGKTYHA--LERFLS--AESGVYCGPLKMLATEV-F-KKSN-DRGTPCDLITGEEKKFIQGEEKPANH 895 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~--l~~l~~--~~~~lil~Ptr~La~Qi-~-~~l~-~~g~~v~~~~G~~~~~~~~~~~~~~I 895 (1269)
++.++.+.+|-|+|||.+. +...++ +..+++++||-..|..+ - ..+. .+++++... . ....
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~--~----------~~~~ 88 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNN--E----------KSQC 88 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccccc--c----------cccc
Confidence 3444555555555555443 222222 45677778888777766 2 2221 133322110 0 0001
Q ss_pred EEEc-cccccCCCCeeEEEEecccccc
Q psy12699 896 VACT-VEMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 896 vv~T-~e~~~~l~~~~~lViDEah~~~ 921 (1269)
-+.. ......+.+.+++||||+=++.
T Consensus 89 ~~~~~~~~~~~l~~~~~lIiDEism~~ 115 (364)
T PF05970_consen 89 KISKNSRLRERLRKADVLIIDEISMVS 115 (364)
T ss_pred cccccchhhhhhhhheeeecccccchh
Confidence 0111 1234458899999999998884
No 314
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.75 E-value=27 Score=40.22 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhh-cccc----cCCCChhhhHhhhhhH
Q psy12699 61 TIAKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKL-RFIQ----FPNYHRNIFFELMPLP 135 (1269)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~-~~~~----~~~~~~~~~~~~~~~~ 135 (1269)
.+.+++...+-++++.+..+=-|.+ + +++.-. .=..|.++++++++..... .... ....+.+.+...+..|
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkv-k--~WsWEs-~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKV-K--GWSWES-YWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhc-C--CccHHH-HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 3556666666666666655544433 1 333221 1134777788777554322 1111 1122445566667778
Q ss_pred HHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhc-------ccCCcceehhhHHHhhhceeeeec------
Q psy12699 136 FIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLH-------IVPNRSVKITVGMMIGGAVIAALN------ 201 (1269)
Q Consensus 136 l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~-------ek~~~~~~~~i~l~~~Gv~l~~~~------ 201 (1269)
++..+.-..+-.+++|+.+|+.+.+ -.+.-++=.++-.++.+ .+-....+++++++++|+++....
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 8877777777889999887765422 22223333333233322 223345679999999999887541
Q ss_pred -----CCccc-hHHHHHHHHHHHHHHHHHHHHHh
Q psy12699 202 -----DLGYN-FQGYVFVLLNNFLTAVNGVYTKK 229 (1269)
Q Consensus 202 -----~~~~~-~~G~ll~l~s~~~~a~~~v~~k~ 229 (1269)
..+|+ ..|++++++|.+++|..++-...
T Consensus 161 ~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 161 ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 11233 37999999999999999876543
No 315
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=89.74 E-value=1.5 Score=54.69 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=35.4
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS 868 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l 868 (1269)
+.+.-+.+++.|--|+|||+. ++.+ .+..+++++.||+..|+.+...+
T Consensus 67 p~LPFs~~~itG~AGsGKst~-i~~l-------------------------------~~~l~cvitg~T~vAAqN~~~~L 114 (828)
T PHA03311 67 PFLPFSVYLITGTAGAGKSTS-IQTL-------------------------------NENLDCVITGATRVAAQNLSAKL 114 (828)
T ss_pred CcCCeEEEEEecCCCCChHHH-HHHH-------------------------------HHhcCEEEEcchHHHHHhhhccc
Confidence 444557789999999999996 6555 23346777888888887777655
Q ss_pred h
Q psy12699 869 N 869 (1269)
Q Consensus 869 ~ 869 (1269)
+
T Consensus 115 ~ 115 (828)
T PHA03311 115 S 115 (828)
T ss_pred c
Confidence 4
No 316
>PRK06893 DNA replication initiation factor; Validated
Probab=89.67 E-value=0.71 Score=50.95 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=13.6
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
+.+.++++|||+|.+.
T Consensus 89 ~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 89 LEQQDLVCLDDLQAVI 104 (229)
T ss_pred cccCCEEEEeChhhhc
Confidence 4578899999999984
No 317
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.63 E-value=0.43 Score=55.20 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=22.9
Q ss_pred EEEEecccccccCCchhHHHHHHhcc-CcceEEEEeecCChH
Q psy12699 911 VAVIDEIQMMRDITRGWAWTRALLGL-MAKEIHVCGEAGAVD 951 (1269)
Q Consensus 911 ~lViDEah~~~d~~rg~~~~~~ll~l-~~~~~~l~~s~~~~~ 951 (1269)
++.|||+|++.. .-++.++-. ....+++++++|-.|
T Consensus 107 iLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 107 ILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred EEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccCCCC
Confidence 789999999954 444554433 334566777665543
No 318
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.63 E-value=0.39 Score=47.43 Aligned_cols=39 Identities=33% Similarity=0.349 Sum_probs=28.1
Q ss_pred EEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 795 IIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+++.|+||+|||+.++..+...... ...+.+++..|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~ 40 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTR 40 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcH
Confidence 46899999999999966555333211 2467888999975
No 319
>PF13173 AAA_14: AAA domain
Probab=89.52 E-value=1.6 Score=43.27 Aligned_cols=17 Identities=47% Similarity=0.726 Sum_probs=12.8
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
++++++.||.|+|||+-
T Consensus 2 ~~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL 18 (128)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56777788888888875
No 320
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.52 E-value=0.79 Score=50.86 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=43.9
Q ss_pred CceEEeccCCCCchHHH---HHHHhc-CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcc
Q psy12699 825 PLKIHAGPTNSGKTYHA---LERFLS-AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTV 900 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~---l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~ 900 (1269)
..+++.+++|+|||..+ ...+.. +.++ ++.+..+|...+...+.. .+ .+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v-~~it~~~l~~~l~~~~~~---------~~----------------~~~ 153 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSV-LIITVADIMSAMKDTFSN---------SE----------------TSE 153 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeE-EEEEHHHHHHHHHHHHhh---------cc----------------ccH
Confidence 47899999999999776 222233 4444 444666666555443310 00 011
Q ss_pred -ccccCCCCeeEEEEecccccccC
Q psy12699 901 -EMTSVNIPYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 901 -e~~~~l~~~~~lViDEah~~~d~ 923 (1269)
+.+..+.++++|||||++...+.
T Consensus 154 ~~~l~~l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 154 EQLLNDLSNVDLLVIDEIGVQTES 177 (244)
T ss_pred HHHHHHhccCCEEEEeCCCCCCCC
Confidence 13334678999999999987543
No 321
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=89.46 E-value=1.5 Score=49.55 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=58.3
Q ss_pred CceEEeccCCCCchH--HH--HHHHhc-CCcEEEEcchHHHHHHHHHHHhccCCCc---eeeecceeeeccCCCCCCCEE
Q psy12699 825 PLKIHAGPTNSGKTY--HA--LERFLS-AESGVYCGPLKMLATEVFKKSNDRGTPC---DLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl--~~--l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~v---~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
.-+++--.||.||.- ++ +....+ .++.+.+...-.|-....+.++..|... ..+..- + .......+..|+
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~-~-~~~~~~~~~Gvl 140 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKF-K-YGDIIRLKEGVL 140 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhh-c-cCcCCCCCCCcc
Confidence 345666677777742 22 334445 4569999999999999999998876531 111110 0 001112356799
Q ss_pred EEcccccc------------------C--CCCeeEEEEecccccccC
Q psy12699 897 ACTVEMTS------------------V--NIPYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 897 v~T~e~~~------------------~--l~~~~~lViDEah~~~d~ 923 (1269)
++|+..+. + -+.=.++|+||+|+..+.
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 99943211 1 123469999999999554
No 322
>PTZ00424 helicase 45; Provisional
Probab=89.45 E-value=0.3 Score=58.82 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=32.2
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
+..+||.+++++|......|.+ +....+++|+..++|-++.
T Consensus 294 ~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~GiDip 334 (401)
T PTZ00424 294 VSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLARGIDVQ 334 (401)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccCCcCcc
Confidence 5667889999999888777764 4567888898888887765
No 323
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.01 E-value=0.79 Score=50.53 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCC
Q psy12699 907 IPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGA 949 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~ 949 (1269)
...+.++|||++.+-. | .+..++.....+.+.+.|.+..
T Consensus 61 ~~~~~liiDE~~~~~~---g-~l~~l~~~~~~~~~~l~GDp~Q 99 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP---G-YLLLLLSLSPAKNVILFGDPLQ 99 (234)
T ss_pred CcCCEEEEeccccCCh---H-HHHHHHhhccCcceEEEECchh
Confidence 4699999999999831 1 1222333344456677765443
No 324
>PRK05642 DNA replication initiation factor; Validated
Probab=88.99 E-value=0.72 Score=51.05 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.5
Q ss_pred CCCCeeEEEEecccccc
Q psy12699 905 VNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~ 921 (1269)
.+.+++++|||++|.+.
T Consensus 94 ~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 94 NLEQYELVCLDDLDVIA 110 (234)
T ss_pred hhhhCCEEEEechhhhc
Confidence 34567899999999884
No 325
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=88.98 E-value=0.38 Score=51.80 Aligned_cols=42 Identities=31% Similarity=0.273 Sum_probs=30.7
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhccc--ccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGV--YCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l--~~g~~vlv~apT 833 (1269)
+++++++++|||+|||..++.+++.....- ..+..+++..||
T Consensus 35 ~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~ 78 (203)
T cd00268 35 SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC
Confidence 467889999999999998766665554332 234567888887
No 326
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=88.94 E-value=0.31 Score=57.73 Aligned_cols=38 Identities=32% Similarity=0.222 Sum_probs=28.7
Q ss_pred EEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 795 IIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++|||||||..++.+.+..... ..+..+++..||
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~ 38 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPT 38 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeeh
Confidence 47899999999999988877654321 234578888897
No 327
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.94 E-value=0.33 Score=58.94 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=32.2
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
+..+||++++++|...+..|.+ +....|++|+..++|-++..
T Consensus 282 v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 282 VGLLTGDVAQKKRLRILEEFTR--GDLDILVATDVAARGLHIPA 323 (423)
T ss_pred EEEecCCCChhHHHHHHHHHHc--CCCcEEEEechhhcCCCccc
Confidence 4456788888888887777754 45678889999999888764
No 328
>KOG2340|consensus
Probab=88.81 E-value=1.6 Score=51.78 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=39.2
Q ss_pred hhccCCCCCeeEEEEcCcc--cccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC
Q psy12699 1084 SKFNDPDNPCKVMVATDAI--GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1084 ~~F~~~~g~~~VLVaTdv~--~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
+.|- .|...||+-|.=+ =|--+| +|+.||+|.++.+ |.=-++.+.+.+|+.--|
T Consensus 596 ~lF~--qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~-----------P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 596 ELFF--QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNN-----------PHFYSEIINMSDKTTSQG 652 (698)
T ss_pred HHHH--hcCceEEEEehhhhhhhhheecceeeEEEecCCCC-----------cHHHHHHHhhhhhhhccC
Confidence 4566 7888888888532 345688 9999999998443 555677888888876544
No 329
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=88.75 E-value=0.22 Score=62.03 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCEEEEe-cHHhHHHHHHHHHh-cCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 991 GDCIVCF-SKNDVYTVSRGIES-RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 991 g~~iv~~-s~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
+.++||+ ++..++.+++.|.. .+.++..+||.+++++|...+..|.+ +....|++|+..++|-++.
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGVLGRGVDLL 435 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecHhhccCCcc
Confidence 3577777 99999999999975 58889999999999999999988875 4567899999999998876
No 330
>KOG0335|consensus
Probab=88.72 E-value=0.39 Score=57.10 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=13.4
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+.+|++++++||||||||.++
T Consensus 108 i~~Grdl~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 108 ISGGRDLMACAQTGSGKTAAF 128 (482)
T ss_pred eecCCceEEEccCCCcchHHH
Confidence 355666666666666666666
No 331
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.62 E-value=0.82 Score=55.26 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=63.5
Q ss_pred hhhhHhhcCcCcc-cchHhHHHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHH
Q psy12699 736 VVLSDIIQGAGHV-DDMFPYYLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 736 ~~l~~i~~~~~~v-~~~~~~~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
+-+-+.+...... +.+++.-+.|.- -.++|.|.. ....+.-..-|.-+++++++.|-.|||||+.|+.+.
T Consensus 177 g~L~d~fdsd~~~~dEvL~~~Lek~s--------s~~mrdIV~-TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRv 247 (747)
T COG3973 177 GKLKDDFDSDTGGRDEVLQRVLEKNS--------SAKMRDIVE-TIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRV 247 (747)
T ss_pred chhHHhhccCCchHHHHHHHHHHhcc--------chhHHHHHH-HhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHH
Confidence 5566666665554 446665555321 122333321 111122223566688999999999999999988776
Q ss_pred ---HhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 815 ---LSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 815 ---l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
|+...+. +.++.++++.|-|.+..=+.+.+-++|.
T Consensus 248 AyLlY~~R~~------------------------l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 248 AYLLYGYRGP------------------------LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred HHHHhccccc------------------------cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 1111111 2245588888989888888888877765
No 332
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=88.52 E-value=0.39 Score=50.14 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHhHHHHhhhccCCCCCeeEEEEcC--cccccccc---CceEEEEcCCCCCCc-cc-----------CCcc----ccccC
Q psy12699 1076 PTTKLAQASKFNDPDNPCKVMVATD--AIGMGLNL---SIRRVIFYSLIKPSL-NE-----------KGER----EIDLI 1134 (1269)
Q Consensus 1076 ~~eR~~v~~~F~~~~g~~~VLVaTd--v~~~GIDi---~v~~VI~~~~~k~~~-~~-----------~G~~----~~~p~ 1134 (1269)
..+++.+++.|+ ++.-.||+|+. .+..|||+ .++.||..+++.+.. ++ .+.. -+.|.
T Consensus 45 ~~~~~~~l~~~~--~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (167)
T PF13307_consen 45 SKSRDELLEEFK--RGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPP 122 (167)
T ss_dssp CCHHHHHHHHHC--CSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHH
T ss_pred cchHHHHHHHHH--hccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHH
Confidence 456777779999 78888999998 99999999 488999999876542 11 1111 13445
Q ss_pred CHhHHHHHhcccCCCCCc
Q psy12699 1135 SVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1135 s~~~y~QR~GRaGR~G~~ 1152 (1269)
-.....|-+||.=|..++
T Consensus 123 a~~~l~Qa~GR~iR~~~D 140 (167)
T PF13307_consen 123 AIRKLKQAIGRLIRSEDD 140 (167)
T ss_dssp HHHHHHHHHHCC--STT-
T ss_pred HHHHHhhhcCcceeccCC
Confidence 566778889999997665
No 333
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=88.46 E-value=0.35 Score=51.89 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHHH
Q psy12699 208 QGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCC 287 (1269)
Q Consensus 208 ~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~v 287 (1269)
.+++.+++-++.|+..-....+ . +-.|.+-+.-+++-++++.+.+.++.. +..++..+..-+.+|.
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k-~----GG~p~qQ~lGtT~GALifaiiv~~~~~---------p~~T~~~~iv~~isG~ 67 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANK-F----GGKPYQQTLGTTLGALIFAIIVFLFVS---------PELTLTIFIVGFISGA 67 (288)
T ss_pred hhHHHHHHHHHHhcccceeeee-c----CCChhHhhhhccHHHHHHHHHHheeec---------CccchhhHHHHHHhhh
Confidence 3577888889999888776665 2 334555555555555555544443321 1233444445567777
Q ss_pred HHHHHHHHHHHhhhccCccchh-hhhhhHHHHHHHHHhhccCccccccccee----ehhhhhhhhhhhhhhcc
Q psy12699 288 MGFILNYSIMLCTQYNSALTTT-IIGCLKNILLTYLGMFIGGDYVYSVNNFI----GINISIIGSILYTIVTF 355 (1269)
Q Consensus 288 ~~~~~~~~~~~~i~~~s~~t~s-v~~~lk~v~~~lls~l~fge~~~s~~~~i----G~~iil~G~~l~~~~~~ 355 (1269)
+-.+.+..+|.+++..+...+. +..-.+.+.+.++|+++|||.. +..+++ ..+++++|+++-.+.++
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~-t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWT-TPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccC-cchhHHHHHHHHHHHHHhheEeeeecc
Confidence 7777788888888877665554 4445778889999999999976 554432 45667778777665543
No 334
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.28 E-value=2.3 Score=46.83 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=15.9
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
-.++.+++.+|+|+|||..+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999998765
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=88.07 E-value=0.85 Score=53.05 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.0
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.++++++|++|+|||+.
T Consensus 140 ~~vi~~~G~~GvGKTTt 156 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTT 156 (336)
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 46889999999999996
No 336
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.02 E-value=0.39 Score=61.01 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=33.1
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+++++++++||||||||.++..+++.....-..+..+++.+||-
T Consensus 40 ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 40 LLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred HHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 346788999999999999998777655543223345688899983
No 337
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=87.82 E-value=0.83 Score=49.62 Aligned_cols=47 Identities=21% Similarity=0.125 Sum_probs=29.1
Q ss_pred cCCceEEeccCCCCchHHH---HHHHhc-CCcEE-EEcchHHHHHHHHHHHhc
Q psy12699 823 CGPLKIHAGPTNSGKTYHA---LERFLS-AESGV-YCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~---l~~l~~-~~~~l-il~Ptr~La~Qi~~~l~~ 870 (1269)
+|+|.+.+.-+|.|||.+. +..++. +.+.+ +++| ++|..|.++.+.+
T Consensus 40 ~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 40 SGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRS 91 (229)
T ss_pred CCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHH
Confidence 4566677777777777655 222333 44444 4445 7799999887753
No 338
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=87.72 E-value=0.45 Score=61.89 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+++++++|+||||||+++.+.++... ..+..+++..||-
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~---~~~~~ilvlqPrR 55 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAP---GIGGKIIMLEPRR 55 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhh---ccCCeEEEEeCcH
Confidence 457889999999999999666665442 2445788888873
No 339
>KOG0388|consensus
Probab=87.65 E-value=1.6 Score=53.28 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=61.5
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
-+|+.-.-+.|.....+|..+.++|.. ....-.|++|.+.+-|||+ -+|+||+||. ..++.-=.
T Consensus 1066 yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS--------------DWNPT~D~ 1130 (1185)
T KOG0388|consen 1066 YRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS--------------DWNPTADQ 1130 (1185)
T ss_pred hhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC--------------CCCcchhh
Confidence 345677788999999999999999995 3556779999999999999 9999999996 12233335
Q ss_pred HHhcccCCCCCcccc
Q psy12699 1141 QIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~ 1155 (1269)
|-.-||.|-|+...+
T Consensus 1131 QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1131 QAMDRAHRLGQTRDV 1145 (1185)
T ss_pred HHHHHHHhccCccce
Confidence 667777777765444
No 340
>KOG0331|consensus
Probab=87.62 E-value=0.58 Score=56.59 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=41.0
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhh
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQAS 1084 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~ 1084 (1269)
+||+.+|.+|...+.+|. .+..+.|+|||..++|.++.+. . .+++-++|..--+-+.+
T Consensus 371 iHGd~sQ~eR~~~L~~Fr--eG~~~vLVATdVAaRGLDi~dV-----~-lVInydfP~~vEdYVHR 428 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFR--EGKSPVLVATDVAARGLDVPDV-----D-LVINYDFPNNVEDYVHR 428 (519)
T ss_pred ecccccHHHHHHHHHhcc--cCCcceEEEcccccccCCCccc-----c-EEEeCCCCCCHHHHHhh
Confidence 478899999999987765 4567899999999999888642 1 23355566554443333
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.51 E-value=2.9 Score=50.48 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.2
Q ss_pred ceEEEEECCCCCCcchHH
Q psy12699 793 RRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~a 810 (1269)
++++.++||||+|||+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL 238 (424)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568889999999999963
No 342
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.44 E-value=1.1 Score=49.73 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.2
Q ss_pred cccCCCCeeEEEEeccccccc
Q psy12699 902 MTSVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 902 ~~~~l~~~~~lViDEah~~~d 922 (1269)
++..+..-|++.|||+|++.-
T Consensus 97 iLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 97 ILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred HHhcCCcCCeEEEehhhhcCh
Confidence 445688889999999999953
No 343
>KOG0989|consensus
Probab=87.34 E-value=0.99 Score=50.46 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHhhhcccccCCceEEeccCCCCchHHH
Q psy12699 811 LERFLSAESGVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 811 l~~~l~~~~~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
++.+..+.+. -..-+.+..+|.|+|||-++
T Consensus 45 V~~L~~a~~~-~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 45 VQVLKNALLR-RILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHHHhh-cCCceEEeeCCCCCcHhHHH
Confidence 5555555433 44568899999999999776
No 344
>KOG0388|consensus
Probab=87.21 E-value=1.6 Score=53.41 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHh
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQA 1032 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~ 1032 (1269)
.+-+.+.|.-.+..-.-+-|+..-.+|...+
T Consensus 1057 ~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~v 1087 (1185)
T KOG0388|consen 1057 IDLIEDYLVYRGYTYLRLDGSSKASDRRDVV 1087 (1185)
T ss_pred HHHHHHHHHhhccceEEecCcchhhHHHHHH
Confidence 3333344444444433344444444444433
No 345
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.12 E-value=0.87 Score=48.05 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=42.9
Q ss_pred cccccCCceEEeccCCCCchHHH---HHHHh-cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCC
Q psy12699 819 SGVYCGPLKIHAGPTNSGKTYHA---LERFL-SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 819 ~~l~~g~~vlv~apTGsGKTl~~---l~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
+-+-+++++++.+|+|+|||..+ ...+. ++.+++ ..+..+|..++..... .+.
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~-f~~~~~L~~~l~~~~~---------~~~------------- 98 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVL-FITASDLLDELKQSRS---------DGS------------- 98 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EE-EEEHHHHHHHHHCCHC---------CTT-------------
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCccee-EeecCceecccccccc---------ccc-------------
Confidence 44566889999999999999887 22233 344444 4566677666532110 000
Q ss_pred EEEEccccccCCCCeeEEEEeccccc
Q psy12699 895 HVACTVEMTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 895 Ivv~T~e~~~~l~~~~~lViDEah~~ 920 (1269)
..+.+..+.+++++||||.-..
T Consensus 99 ----~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 99 ----YEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp ----HCHHHHHHHTSSCEEEETCTSS
T ss_pred ----hhhhcCccccccEeccccccee
Confidence 0123345678999999998644
No 346
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=86.54 E-value=0.75 Score=51.02 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=33.8
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
|+..|..+++.+|+|+|||..+++. +.++.+++|+. +-+-..|+.+++.++|..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 4455666666666666666655322 23477888888 445566777777776654
No 347
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=0.58 Score=52.34 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=19.8
Q ss_pred ccCCceEEeccCCCCchHHH--HHHHhc
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA--LERFLS 847 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~--l~~l~~ 847 (1269)
++..|+++.+|||||||+.| +..++.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 45668999999999999887 444443
No 348
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.42 E-value=3.1 Score=49.90 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=12.4
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+.-++||||+|.+.
T Consensus 137 ~~~~viviDE~d~l~ 151 (394)
T PRK00411 137 DRVLIVALDDINYLF 151 (394)
T ss_pred CCEEEEEECCHhHhh
Confidence 345689999999996
No 349
>PRK01172 ski2-like helicase; Provisional
Probab=86.32 E-value=0.51 Score=60.96 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=33.1
Q ss_pred CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1014 TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1014 ~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..+...|+.+++++|......|.+ +....+++|+..+.|-++.
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLvaT~~la~Gvnip 328 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIVATPTLAAGVNLP 328 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHc--CCCeEEEecchhhccCCCc
Confidence 346778999999999887777764 4567888888888776654
No 350
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.23 E-value=1.9 Score=52.70 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=15.9
Q ss_pred cCCCCeeEEEEeccccccc
Q psy12699 904 SVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 904 ~~l~~~~~lViDEah~~~d 922 (1269)
+...+++++||||+|++.+
T Consensus 112 P~~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 112 PISSKFKVYIIDEVHMLSN 130 (491)
T ss_pred cccCCceEEEEeChHhCCH
Confidence 3467899999999999964
No 351
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.99 E-value=1.5 Score=46.21 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=15.7
Q ss_pred eEEEEECCCCCCcchHHHHHH
Q psy12699 794 RIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~ 814 (1269)
++.++.||-+||||+..++..
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~ 22 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRI 22 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCcCChhHHHHHHHH
Confidence 567888888888888755444
No 352
>KOG0391|consensus
Probab=85.99 E-value=1.3 Score=57.02 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=55.0
Q ss_pred cEEEEcchHHHHHHHHHHHhcc--CCCceeeecceeee-ccCCCC----CCCEEEEcccccc------CCCCeeEEEEec
Q psy12699 850 SGVYCGPLKMLATEVFKKSNDR--GTPCDLITGEEKKF-IQGEEK----PANHVACTVEMTS------VNIPYEVAVIDE 916 (1269)
Q Consensus 850 ~~lil~Ptr~La~Qi~~~l~~~--g~~v~~~~G~~~~~-~~~~~~----~~~Ivv~T~e~~~------~l~~~~~lViDE 916 (1269)
--||++||-.+.+ +.-+++++ |.++-..+|..+.. +.+..| ..++.|..+.... .-.++.++|+||
T Consensus 667 PHLIVVpTsviLn-WEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDE 745 (1958)
T KOG0391|consen 667 PHLIVVPTSVILN-WEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDE 745 (1958)
T ss_pred CceEEeechhhhh-hhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhh
Confidence 3488899877654 44445544 34555556653322 222233 3456666655222 256899999999
Q ss_pred ccccccCCchhHHHHHHhccCcceEEEEeecCC
Q psy12699 917 IQMMRDITRGWAWTRALLGLMAKEIHVCGEAGA 949 (1269)
Q Consensus 917 ah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~ 949 (1269)
||++.+ -+...|+..+.--...+.++.+++-.
T Consensus 746 aqnIKn-fksqrWQAllnfnsqrRLLLtgTPLq 777 (1958)
T KOG0391|consen 746 AQNIKN-FKSQRWQALLNFNSQRRLLLTGTPLQ 777 (1958)
T ss_pred hhhhcc-hhHHHHHHHhccchhheeeecCCchh
Confidence 999943 34445655543333445556565543
No 353
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=85.93 E-value=2.8 Score=52.22 Aligned_cols=107 Identities=8% Similarity=0.042 Sum_probs=55.4
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhc----cC------C--Cceeeeccee--eeccCCCC---CCCEEEEcccccc-CCCC
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSND----RG------T--PCDLITGEEK--KFIQGEEK---PANHVACTVEMTS-VNIP 908 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~----~g------~--~v~~~~G~~~--~~~~~~~~---~~~Ivv~T~e~~~-~l~~ 908 (1269)
.+.+++|.+|...-+++++++++. .+ . ++.-..|+.. .+...... ...+.+++..... .-..
T Consensus 215 ~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~ 294 (752)
T PHA03333 215 LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQN 294 (752)
T ss_pred cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCC
Confidence 477899999999888888877643 22 1 1111223221 11111111 1455554433211 2346
Q ss_pred eeEEEEecccccccCCchhHHHHHHhcc--CcceEEEEeecC-ChHHHHHHH
Q psy12699 909 YEVAVIDEIQMMRDITRGWAWTRALLGL--MAKEIHVCGEAG-AVDLVKAIM 957 (1269)
Q Consensus 909 ~~~lViDEah~~~d~~rg~~~~~~ll~l--~~~~~~l~~s~~-~~~~~~~l~ 957 (1269)
++++|+|||+.+.++ .+..++--+ ....+.+.+++. ...+...+.
T Consensus 295 ~DLLIVDEAAfI~~~----~l~aIlP~l~~~~~k~IiISS~~~~~s~tS~L~ 342 (752)
T PHA03333 295 PDLVIVDEAAFVNPG----ALLSVLPLMAVKGTKQIHISSPVDADSWISRVG 342 (752)
T ss_pred CCEEEEECcccCCHH----HHHHHHHHHccCCCceEEEeCCCCcchHHHHhh
Confidence 799999999999652 444433222 223455555554 333444343
No 354
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=85.35 E-value=0.68 Score=60.41 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=28.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+++++++.|+||||||+++.+.+|.. ....+ .+++..||-
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~--~~~~~-~ilvlqPrR 58 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQH--GGING-KIIMLEPRR 58 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHc--CCcCC-eEEEECChH
Confidence 45788999999999999965555433 22233 688888874
No 355
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.23 E-value=0.38 Score=59.27 Aligned_cols=52 Identities=33% Similarity=0.365 Sum_probs=33.3
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHh
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTT 1078 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~e 1078 (1269)
+|+.+++++|......|. .+....+++|+..+.|-++.. +. .++|-++|...
T Consensus 256 ~H~~l~~~eR~~i~~~F~--~g~~~vLVaT~~~~~GID~p~-----V~-~VI~~~~P~s~ 307 (470)
T TIGR00614 256 YHAGLEISARDDVHHKFQ--RDEIQVVVATVAFGMGINKPD-----VR-FVIHYSLPKSM 307 (470)
T ss_pred eeCCCCHHHHHHHHHHHH--cCCCcEEEEechhhccCCccc-----ce-EEEEeCCCCCH
Confidence 466777777777766665 345567788888888777663 22 33455666543
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.19 E-value=4.1 Score=48.08 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++++++++||||+|||+.
T Consensus 136 ~g~ii~lvGptGvGKTTt 153 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTT 153 (374)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467888999999999996
No 357
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.06 E-value=0.71 Score=56.28 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=32.3
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccc----cCCceEEeccCC
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVY----CGPLKIHAGPTN 834 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~----~g~~vlv~apTG 834 (1269)
..+.++++++++|||+|||..++.+++....... .+..+++.+||-
T Consensus 34 ~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~ 83 (434)
T PRK11192 34 PALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTR 83 (434)
T ss_pred HHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcH
Confidence 4456788999999999999998766654321111 124688999975
No 358
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.98 E-value=1.1 Score=54.98 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=42.3
Q ss_pred CceEEeccCCCCchHHH--HH-HHhc---CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 825 PLKIHAGPTNSGKTYHA--LE-RFLS---AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~--l~-~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
..+++.||+|+|||+.+ +. .+.+ +.+++|+ +..++..+....+... .
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~---------~----------------- 201 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN---------T----------------- 201 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC---------c-----------------
Confidence 45888999999999876 21 1222 3344444 5566666655554310 0
Q ss_pred ccccccCCCCeeEEEEeccccccc
Q psy12699 899 TVEMTSVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 899 T~e~~~~l~~~~~lViDEah~~~d 922 (1269)
..+....+.++++++|||+|.+..
T Consensus 202 ~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 202 MEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHHHHHhcCCEEEEehhhhhcC
Confidence 011222345788999999999843
No 359
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.67 E-value=1.3 Score=50.60 Aligned_cols=28 Identities=4% Similarity=0.102 Sum_probs=20.9
Q ss_pred CcchHHHHHHHHHhcCCceEEEeecccC
Q psy12699 404 EAGAVDLVKAIMMTTNEDVEVYKYKRLT 431 (1269)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 431 (1269)
.++..+.++++=+..|++..|-..++..
T Consensus 8 a~~~~eal~~ik~elG~dAvIls~r~v~ 35 (282)
T TIGR03499 8 APTMREALAKVKEELGPDAVILSTRKVR 35 (282)
T ss_pred cCCHHHHHHHHHHHHCCCcEEEEeeEec
Confidence 3567778888888889888887766543
No 360
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.50 E-value=2 Score=51.86 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=40.8
Q ss_pred CceEEeccCCCCchHHH--HH-HHhc---CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 825 PLKIHAGPTNSGKTYHA--LE-RFLS---AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~--l~-~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
..+++.||+|+|||+.+ +. .+.+ +.+++|+ +...+..+....+... .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~~~---------~----------------- 189 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALRNN---------K----------------- 189 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHHcC---------C-----------------
Confidence 35788999999999876 11 1221 3456665 4445555544444310 0
Q ss_pred ccccccCCCCeeEEEEeccccccc
Q psy12699 899 TVEMTSVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 899 T~e~~~~l~~~~~lViDEah~~~d 922 (1269)
..+....+.+.++|+|||+|.+..
T Consensus 190 ~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 190 MEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHHHHHhCCEEEEehhhhhcC
Confidence 001112245678999999999854
No 361
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.34 E-value=0.8 Score=56.17 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=39.7
Q ss_pred EEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhH
Q psy12699 1017 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTK 1079 (1269)
Q Consensus 1017 ~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR 1079 (1269)
..+|+.+++++|...+..|.+ +....|++|+..++|.++..+ . .++|-++|....
T Consensus 273 ~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~rGiDip~v-----~-~VI~~~~P~~~~ 327 (456)
T PRK10590 273 AAIHGNKSQGARTRALADFKS--GDIRVLVATDIAARGLDIEEL-----P-HVVNYELPNVPE 327 (456)
T ss_pred EEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHhcCCCcccC-----C-EEEEeCCCCCHH
Confidence 456888999999888888865 456788999999999887643 2 234556665543
No 362
>KOG1015|consensus
Probab=84.32 E-value=3.7 Score=52.00 Aligned_cols=79 Identities=29% Similarity=0.355 Sum_probs=64.5
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCC--CeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDN--PCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g--~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
.|..-.-+.|.....+|+...+.|++|.+ ..-.||+|-+..-|||+ -+++||++|. ..+++-=
T Consensus 1187 ~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa--------------sWNPSyD 1252 (1567)
T KOG1015|consen 1187 RGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA--------------SWNPSYD 1252 (1567)
T ss_pred cCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec--------------ccCCccc
Confidence 35556677999999999999999996554 34679999999999999 9999999997 2344555
Q ss_pred HHHhcccCCCCCcccc
Q psy12699 1140 LQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~ 1155 (1269)
.|-+=|+-|+|+..-+
T Consensus 1253 tQSIFRvyRfGQtKPv 1268 (1567)
T KOG1015|consen 1253 TQSIFRVYRFGQTKPV 1268 (1567)
T ss_pred hHHHHHHHhhcCcCce
Confidence 7888899999987555
No 363
>KOG0345|consensus
Probab=84.25 E-value=0.82 Score=53.51 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=35.1
Q ss_pred cccccCceEEEEECCCCCCcchHHHHHHHhhh---cccccCC--ceEEeccCC
Q psy12699 787 NARSISRRIIFHAGPTNSGKTYHALERFLSAE---SGVYCGP--LKIHAGPTN 834 (1269)
Q Consensus 787 ~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~---~~l~~g~--~vlv~apTG 834 (1269)
.+..++++|+++-++||||||.+++-+++.-. ++-.... .-++.+||-
T Consensus 37 IPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 37 IPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred hHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 35567899999999999999999988876543 2222223 467888885
No 364
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.11 E-value=1.1 Score=49.24 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=31.8
Q ss_pred ccccCCceEEeccCCCCchHHHHH----HHhc-CCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALE----RFLS-AESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~----~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
|+..|..+++.+|+|+|||..+++ .+.+ +.+++|+. +.+-..++.++++.+|..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWD 73 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCc
Confidence 455666677777777777666532 3344 67888887 233346777777777764
No 365
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.05 E-value=0.45 Score=57.44 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=14.2
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++..
T Consensus 119 ~g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTD 135 (484)
T ss_pred cCCCEEEEEechhhcCH
Confidence 35788999999999954
No 366
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=83.99 E-value=1.8 Score=48.81 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=16.9
Q ss_pred cCCcEEEEc---chHHHHHHHHHHHhccCC
Q psy12699 847 SAESGVYCG---PLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 847 ~~~~~lil~---Ptr~La~Qi~~~l~~~g~ 873 (1269)
++.+++|+. |...+..++.++...+|.
T Consensus 63 ~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 63 RGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 467888887 555555566555555554
No 367
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.74 E-value=1.6 Score=55.70 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHhhhcccccC-CceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccC
Q psy12699 804 SGKTYHALERFLSAESGVYCG-PLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRG 872 (1269)
Q Consensus 804 sGKT~~al~~~l~~~~~l~~g-~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g 872 (1269)
+|.--.++.++.. ++.+| ++.++.+.||||||+.....+.+ ++..||++|.+.+|.|+++.++.+-
T Consensus 11 ~~~Q~~ai~~l~~---~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 11 AGDQPKAIAKLVE---GLTDGEKHQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred ChHHHHHHHHHHH---hhhcCCCcEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhC
Confidence 3444445666633 34444 36679999999999876443333 6789999999999999999998763
No 368
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.74 E-value=2.1 Score=52.14 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=42.4
Q ss_pred CceEEeccCCCCchHHH--HHH-Hh---cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 825 PLKIHAGPTNSGKTYHA--LER-FL---SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~--l~~-l~---~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
..+++.|++|+|||+.. +.. +. .+.+++|+ +..++..++...+.... .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-~~~~f~~~~~~~l~~~~-------------------------~ 195 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-SGDEFARKAVDILQKTH-------------------------K 195 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHHhh-------------------------h
Confidence 34778888888888665 211 11 24455554 44677777766664210 0
Q ss_pred cc-ccccCCCCeeEEEEecccccc
Q psy12699 899 TV-EMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 899 T~-e~~~~l~~~~~lViDEah~~~ 921 (1269)
.. +......+.+++||||+|.+.
T Consensus 196 ~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 196 EIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred HHHHHHHHhccCCEEEEecccccc
Confidence 01 122235678899999999984
No 369
>PRK08939 primosomal protein DnaI; Reviewed
Probab=83.47 E-value=1.6 Score=50.18 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=14.9
Q ss_pred cccCCCCeeEEEEeccccc
Q psy12699 902 MTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 902 ~~~~l~~~~~lViDEah~~ 920 (1269)
.+..+.++++|||||...-
T Consensus 211 ~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 211 KIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHhcCCCEEEEecCCCc
Confidence 3445789999999999754
No 370
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.46 E-value=1.9 Score=55.63 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=14.0
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
-.+++++||||+|+|.
T Consensus 117 ~gk~KViIIDEAh~LT 132 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS 132 (944)
T ss_pred cCCcEEEEEechHhcC
Confidence 3578999999999995
No 371
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.31 E-value=2.5 Score=52.34 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.6
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++..
T Consensus 117 ~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSG 133 (509)
T ss_pred cCCcEEEEEEChHhcCH
Confidence 45899999999999964
No 372
>PF13871 Helicase_C_4: Helicase_C-like
Probab=83.30 E-value=1.6 Score=48.95 Aligned_cols=62 Identities=27% Similarity=0.211 Sum_probs=45.0
Q ss_pred hhccCCCCCeeEEEEcCccccccccCc-eEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcc
Q psy12699 1084 SKFNDPDNPCKVMVATDAIGMGLNLSI-RRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHF 1153 (1269)
Q Consensus 1084 ~~F~~~~g~~~VLVaTdv~~~GIDi~v-~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g 1153 (1269)
+.|. +|+.+|+|.|+++++||.+.. ..+-|-.. +..+. - --|.|.+..+|..||+-|.|+..
T Consensus 55 ~~F~--~g~k~v~iis~AgstGiSlHAd~~~~nqr~-Rv~i~--l---e~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 55 QAFM--DGEKDVAIISDAGSTGISLHADRRVKNQRR-RVHIT--L---ELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHh--CCCceEEEEecccccccchhccccCCCCCc-eEEEE--e---eCCCCHHHHHHHhcccccccccc
Confidence 6899 999999999999999999933 33333211 00000 0 13899999999999999999863
No 373
>KOG0344|consensus
Probab=83.25 E-value=1 Score=54.34 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=52.9
Q ss_pred CEEEEe-cHHhHHHHHHHH-HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 992 DCIVCF-SKNDVYTVSRGI-ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 992 ~~iv~~-s~~~~~~l~~~L-~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..++|. +.+.+.++...| .-.+..+.++||..++.+|...+..|.. +..-.|++|+.+++|.+++
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvLicTdll~RGiDf~ 455 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIWVLICTDLLARGIDFK 455 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCeeEEEehhhhhcccccc
Confidence 455566 999999999999 5678899999999999999998877753 4556788888888885554
No 374
>PRK02362 ski2-like helicase; Provisional
Probab=83.20 E-value=0.85 Score=59.54 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=35.0
Q ss_pred CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1014 TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1014 ~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..++..|+.+++++|......|.+ +....+++|+..+.|-++.
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~--G~i~VLvaT~tla~GvnlP 346 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRD--RLIKVISSTPTLAAGLNLP 346 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHc--CCCeEEEechhhhhhcCCC
Confidence 357788999999999888877765 5678889999999887765
No 375
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=83.14 E-value=0.88 Score=53.14 Aligned_cols=41 Identities=27% Similarity=0.197 Sum_probs=26.1
Q ss_pred cccCCceEEeccCCCCchHHH--H-HHHhcCCcEEEEcchHHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA--L-ERFLSAESGVYCGPLKMLA 861 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~--l-~~l~~~~~~lil~Ptr~La 861 (1269)
+..++++++++|||||||... + ..+-...+.+.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 456778888888888887654 2 2222245666666777664
No 376
>KOG0348|consensus
Probab=83.09 E-value=1.1 Score=53.18 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=35.1
Q ss_pred ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1015 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1015 ~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
+..-+||+|+|++|......|.....- .|.+||..++|.++..
T Consensus 473 k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~ 515 (708)
T KOG0348|consen 473 KFYRLHGSMEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPH 515 (708)
T ss_pred eEEEecCchhHHHHHHHHHhhccccce--EEEehhhhhccCCCCC
Confidence 455788999999999999888654433 8889999999998874
No 377
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=82.94 E-value=0.63 Score=59.55 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=25.5
Q ss_pred ccccCceEEEEECCCCCCcchHHHHHHHhhh
Q psy12699 788 ARSISRRIIFHAGPTNSGKTYHALERFLSAE 818 (1269)
Q Consensus 788 ~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~ 818 (1269)
+....++.+++++|||||||.+|+.+.+...
T Consensus 32 ~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l 62 (814)
T COG1201 32 PEIHSGENVLIIAPTGSGKTEAAFLPVINEL 62 (814)
T ss_pred HHHhCCCceEEEcCCCCChHHHHHHHHHHHH
Confidence 4445788899999999999999987776653
No 378
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=82.93 E-value=2.2 Score=54.02 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=14.5
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|+|.+
T Consensus 117 ~gr~KVIIIDEah~LT~ 133 (830)
T PRK07003 117 DARFKVYMIDEVHMLTN 133 (830)
T ss_pred cCCceEEEEeChhhCCH
Confidence 35789999999999964
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=82.89 E-value=2 Score=52.32 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=48.1
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCE
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANH 895 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~I 895 (1269)
|+..|.-+++.+++|+|||...++.. .++.+++|+. +.+-..|+.++.+.+|....- +
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~Ees~~qi~~ra~rlg~~~~~-----------------l 137 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GEESASQIKLRAERLGLPSDN-----------------L 137 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ccccHHHHHHHHHHcCCChhc-----------------E
Confidence 44555666667777777766552221 2366788877 345566887777766643210 1
Q ss_pred EEEc---cc-cccC--CCCeeEEEEecccccc
Q psy12699 896 VACT---VE-MTSV--NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 896 vv~T---~e-~~~~--l~~~~~lViDEah~~~ 921 (1269)
.+.. .+ +... -.+.+++|||+++.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechhhhc
Confidence 1211 11 1111 2478999999999774
No 380
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=82.73 E-value=0.88 Score=48.87 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=30.4
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTY 839 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl 839 (1269)
.+++.++.|+.|+|||+. +..+....+ ..|.++++.+||+.....
T Consensus 17 ~~~~~~l~G~aGtGKT~~-l~~~~~~~~--~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTL-LKALAEALE--AAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp TCSEEEEEESTTSTHHHH-HHHHHHHHH--HTT--EEEEESSHHHHHH
T ss_pred CCeEEEEEECCCCCHHHH-HHHHHHHHH--hCCCeEEEECCcHHHHHH
Confidence 346788999999999996 544433321 247899999999865543
No 381
>KOG2227|consensus
Probab=82.70 E-value=4.8 Score=47.69 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=82.8
Q ss_pred EEEEECCCCCCcchHH----HHHHHhhhcccccCCceEEeccCCCCchHHHH---HHHhc---CCcEEEEcchH-HHHHH
Q psy12699 795 IIFHAGPTNSGKTYHA----LERFLSAESGVYCGPLKIHAGPTNSGKTYHAL---ERFLS---AESGVYCGPLK-MLATE 863 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~a----l~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l---~~l~~---~~~~lil~Ptr-~La~Q 863 (1269)
-++..+++|.+|+..- ++.|+......-.+..+-|++.+|+|||.+-. ..... ....+++--+- ..+..
T Consensus 142 ~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 142 SLLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred HHHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4567899999998762 55554444344456789999999999998762 22111 23445655442 45556
Q ss_pred HHHHHhccCCCceeeec-ceeeeccCCCCCCCEEEEccccccCCCCeeEEEEecccccccCCchhHHHHH-HhccCcceE
Q psy12699 864 VFKKSNDRGTPCDLITG-EEKKFIQGEEKPANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRA-LLGLMAKEI 941 (1269)
Q Consensus 864 i~~~l~~~g~~v~~~~G-~~~~~~~~~~~~~~Ivv~T~e~~~~l~~~~~lViDEah~~~d~~rg~~~~~~-ll~l~~~~~ 941 (1269)
++..+..-- +....| +.....+ ..+- +........=++|+||.|++...+.+..++.. +-.++...+
T Consensus 222 iF~kI~~~~--~q~~~s~~~~~~~~-----~~~~----~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~ 290 (529)
T KOG2227|consen 222 IFKKIFSSL--LQDLVSPGTGMQHL-----EKFE----KHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRI 290 (529)
T ss_pred HHHHHHHHH--HHHhcCCchhHHHH-----HHHH----HHHhcccceEEEEechhhHHhhcccceeeeehhcccCCccee
Confidence 665553210 000001 0000000 0000 00001224458999999999644433333322 234556778
Q ss_pred EEEeecCChHHHHHHHH
Q psy12699 942 HVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 942 ~l~~s~~~~~~~~~l~~ 958 (1269)
.++|-+...+..+.+..
T Consensus 291 iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLP 307 (529)
T ss_pred eeeeehhhhhHHHHHhh
Confidence 88888888877666653
No 382
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.57 E-value=1.1 Score=56.48 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=31.2
Q ss_pred eEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1016 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
+..+|+.+++.+|...+..|.+ +....|++|+..++|.++..
T Consensus 284 v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 284 VGVLSGDVPQKKRESLLNRFQK--GQLEILVATDVAARGLHIDG 325 (572)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEehhhhcCCCccC
Confidence 4567788888888877777754 45677888888888877763
No 383
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=82.44 E-value=2.6 Score=50.29 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=14.4
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||+|+|..
T Consensus 115 ~~~~kViiIDead~m~~ 131 (394)
T PRK07940 115 TGRWRIVVIEDADRLTE 131 (394)
T ss_pred cCCcEEEEEechhhcCH
Confidence 45789999999999954
No 384
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=82.40 E-value=3.2 Score=45.89 Aligned_cols=20 Identities=35% Similarity=0.253 Sum_probs=15.6
Q ss_pred EEEEECCCCCCcchHHHHHH
Q psy12699 795 IIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~~ 814 (1269)
+-++.|++||+||.-|+.--
T Consensus 3 I~ihhG~pGSyKTsgAv~~~ 22 (398)
T COG4128 3 ISIHHGIPGSYKTSGAVCNV 22 (398)
T ss_pred eEEEecCCCCcccchhHHhh
Confidence 45789999999999876444
No 385
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.30 E-value=2.7 Score=42.93 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=14.3
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++|+||.+.+.+
T Consensus 83 ~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 83 RGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCEEEEEEcHHHHHH
Confidence 56899999999998854
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=82.23 E-value=9.3 Score=45.01 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCcchHHHHHHHHHhcCCceEEEeeccc
Q psy12699 403 GEAGAVDLVKAIMMTTNEDVEVYKYKRL 430 (1269)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 430 (1269)
-.++..+.++.+=+..||+..|-.++|.
T Consensus 7 ~a~s~~ea~~kIr~~lG~~AvIls~r~i 34 (407)
T COG1419 7 TAESMREAIEKIRKELGEDAVILSNRRI 34 (407)
T ss_pred eccCHHHHHHHHHHHHCCCcEEeeccee
Confidence 3456777778888888888888766553
No 387
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.14 E-value=1.9 Score=48.11 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=8.5
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
-.+++.||||||||+.
T Consensus 126 GLILVTGpTGSGKSTT 141 (353)
T COG2805 126 GLILVTGPTGSGKSTT 141 (353)
T ss_pred ceEEEeCCCCCcHHHH
Confidence 3455555555555553
No 388
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.02 E-value=5.2 Score=49.34 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCCC---ce------eee-cceeeeccCCCCCCCEEEEccccccC-CCCeeEEEEec
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGTP---CD------LIT-GEEKKFIQGEEKPANHVACTVEMTSV-NIPYEVAVIDE 916 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~~---v~------~~~-G~~~~~~~~~~~~~~Ivv~T~e~~~~-l~~~~~lViDE 916 (1269)
+..+++++++++-|..+++.++++-.. .. ... ...... ....+..+.+.|.+.... -.+..++|+||
T Consensus 54 ~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~~~~~~~~~~i~--~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE 131 (477)
T PF03354_consen 54 GAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKKPKIIKSNKKEIE--FPKTGSFFKALSSDADSLDGLNPSLAIFDE 131 (477)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchhhhhhhhhceEEE--EcCCCcEEEEEecCCCCccCCCCceEEEeC
Confidence 567899999999999999887653111 01 000 000100 011123344444332221 23679999999
Q ss_pred cccccc
Q psy12699 917 IQMMRD 922 (1269)
Q Consensus 917 ah~~~d 922 (1269)
+|...+
T Consensus 132 ~h~~~~ 137 (477)
T PF03354_consen 132 LHAHKD 137 (477)
T ss_pred CCCCCC
Confidence 999965
No 389
>PLN03025 replication factor C subunit; Provisional
Probab=81.83 E-value=3.3 Score=48.15 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.4
Q ss_pred CCeeEEEEeccccccc
Q psy12699 907 IPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d 922 (1269)
.+.+++||||+|.+..
T Consensus 98 ~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 98 GRHKIVILDEADSMTS 113 (319)
T ss_pred CCeEEEEEechhhcCH
Confidence 3588999999999953
No 390
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.77 E-value=2.7 Score=51.48 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=14.8
Q ss_pred CCCCeeEEEEeccccccc
Q psy12699 905 VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~d 922 (1269)
...+.+++||||+|++..
T Consensus 114 ~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 114 MEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred hcCCeEEEEEEChHHhHH
Confidence 356789999999999953
No 391
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.64 E-value=3.5 Score=48.96 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=14.3
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||+|++.+
T Consensus 117 ~~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR 133 (363)
T ss_pred cCCceEEEEEChhhcCH
Confidence 45789999999999954
No 392
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=81.62 E-value=2.5 Score=50.04 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=44.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+..|.-+++.+++|+|||...++.. ..+.+++|+.- .+-..|+..+..+++.... ++.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~-EEs~~qi~~Ra~rlg~~~~-----------------~l~ 140 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG-EESPEQIKLRADRLGISTE-----------------NLY 140 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC-CcCHHHHHHHHHHcCCCcc-----------------cEE
Confidence 4445555666666666665442221 22467788763 2445677777766554211 111
Q ss_pred EEc---cc-cccC--CCCeeEEEEecccccc
Q psy12699 897 ACT---VE-MTSV--NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 897 v~T---~e-~~~~--l~~~~~lViDEah~~~ 921 (1269)
+.. .+ +... -.+.+++|||+++.+.
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 111 11 1111 3478999999999873
No 393
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=81.62 E-value=4.3 Score=42.77 Aligned_cols=22 Identities=41% Similarity=0.431 Sum_probs=16.2
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.+..+++||-+||||+.-+++.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~ 25 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRA 25 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHH
Confidence 4677889999999998644433
No 394
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.60 E-value=4.8 Score=48.96 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred CceEEeccCCCCchHHH--H-HHHh-cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcc
Q psy12699 825 PLKIHAGPTNSGKTYHA--L-ERFL-SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTV 900 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~--l-~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~ 900 (1269)
..+++.||+|+|||+.+ + ..+. .+.+++|+.. ..+..+....+.. +.. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~~~-----------------~ 194 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------GEM-----------------Q 194 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------chH-----------------H
Confidence 35888999999998776 1 2222 3566666653 4555554444421 000 0
Q ss_pred ccccCCCCeeEEEEeccccccc
Q psy12699 901 EMTSVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 901 e~~~~l~~~~~lViDEah~~~d 922 (1269)
+......+.++++|||+|.+..
T Consensus 195 ~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 195 RFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HHHHHcccCCEEEEcchhhhcC
Confidence 1112245788999999999853
No 395
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.58 E-value=3 Score=52.20 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++..
T Consensus 116 ~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 116 QGRFKVYLIDEVHMLST 132 (702)
T ss_pred cCCcEEEEEechHhcCH
Confidence 45789999999999954
No 396
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.55 E-value=1 Score=52.83 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=13.8
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
....+++||||+|.+.+
T Consensus 123 ~~~~~vlilDe~~~l~~ 139 (337)
T PRK12402 123 SADYKTILLDNAEALRE 139 (337)
T ss_pred CCCCcEEEEeCcccCCH
Confidence 45678999999999853
No 397
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.53 E-value=5.4 Score=47.27 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.3
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+.-++||||+|.+.
T Consensus 128 ~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 128 GDSLIIVLDEIDYLV 142 (365)
T ss_pred CCeEEEEECchhhhc
Confidence 345689999999995
No 398
>PRK04195 replication factor C large subunit; Provisional
Probab=81.46 E-value=4 Score=50.42 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=12.7
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+..+|||||+|.+..
T Consensus 98 ~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 98 RRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEEecCccccc
Confidence 567999999999853
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.33 E-value=2.1 Score=46.00 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.9
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
++++++||||+|||+.
T Consensus 2 ~vi~lvGptGvGKTTt 17 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTT 17 (196)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred EEEEEECCCCCchHhH
Confidence 4677888888888886
No 400
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=81.29 E-value=0.9 Score=56.42 Aligned_cols=41 Identities=32% Similarity=0.538 Sum_probs=35.3
Q ss_pred EEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccccc
Q psy12699 1018 VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGI 1060 (1269)
Q Consensus 1018 ~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l 1060 (1269)
.+||+++++.|...+..|. .+....|++||..++|.++..+
T Consensus 302 ~lhG~l~q~~R~~~l~~F~--~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 302 ALHGDLPQEERDRALEKFK--DGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred EecCCCCHHHHHHHHHHHH--cCCCCEEEEechhhccCCcccc
Confidence 3689999999999999998 6777899999999999888743
No 401
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=81.11 E-value=3.3 Score=51.99 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCCeeEEEEeccccccc
Q psy12699 905 VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~d 922 (1269)
...+++++||||+|++..
T Consensus 116 ~~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 116 SEAKYKVYIIDEVHMLST 133 (559)
T ss_pred ccCCeEEEEEECcccCCH
Confidence 356899999999999954
No 402
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=80.79 E-value=0.83 Score=47.81 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=34.2
Q ss_pred EeccCCCCchHHH-H--HHHhc--CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCCCEEEEc
Q psy12699 829 HAGPTNSGKTYHA-L--ERFLS--AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPANHVACT 899 (1269)
Q Consensus 829 v~apTGsGKTl~~-l--~~l~~--~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T 899 (1269)
+.|+-|-|||.+. + ..+.. ..++++++|+.+-++.+++.+.. .+.+......... ..........|-+..
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQ-IIKLRFNKQRIEFVA 80 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC---------------------------CCC--B--
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccc-ccccccccceEEEEC
Confidence 4555666665443 1 11111 24789999999988888766532 2221100000000 000001134556666
Q ss_pred ccccc-CCCCeeEEEEeccccc
Q psy12699 900 VEMTS-VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 900 ~e~~~-~l~~~~~lViDEah~~ 920 (1269)
|+.+. .....|++|||||=.+
T Consensus 81 Pd~l~~~~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 81 PDELLAEKPQADLLIVDEAAAI 102 (177)
T ss_dssp HHHHCCT----SCEEECTGGGS
T ss_pred CHHHHhCcCCCCEEEEechhcC
Confidence 66333 3446799999999888
No 403
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.56 E-value=3.2 Score=50.14 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.3
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+..+++|||+|++..
T Consensus 92 ~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 92 RRTILFIDEIHRFNK 106 (413)
T ss_pred CceEEEEechhhhCH
Confidence 456999999999953
No 404
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.48 E-value=1.4 Score=46.10 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=25.1
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.+++.+|||||||..++..+..- .. ++++.+|+
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l----~~--~~l~~~p~ 59 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILEL----AR--KVLIVAPN 59 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHH----HC--EEEEEESS
T ss_pred CCCEEEEECCCCCcChhhhhhhhcc----cc--ceeEecCH
Confidence 3557889999999999876434222 22 88888887
No 405
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=80.29 E-value=0.98 Score=48.14 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=15.7
Q ss_pred eEEEEECCCCCCcchHHHHHH
Q psy12699 794 RIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~ 814 (1269)
+++++.||||+|||..|+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA 22 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALA 22 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHH
Confidence 467899999999999876443
No 406
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.18 E-value=4.2 Score=47.18 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.4
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+.+++||||+|.+.
T Consensus 99 ~~~~vliiDe~d~l~ 113 (316)
T PHA02544 99 GGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEEECccccc
Confidence 356799999999984
No 407
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=80.12 E-value=3.8 Score=46.91 Aligned_cols=79 Identities=16% Similarity=0.029 Sum_probs=46.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccc---cCCceEEeccCCCCchHHHHHHHhc--CCcEEEEcchHHHHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVY---CGPLKIHAGPTNSGKTYHALERFLS--AESGVYCGPLKMLATEVFK 866 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~---~g~~vlv~apTGsGKTl~~l~~l~~--~~~~lil~Ptr~La~Qi~~ 866 (1269)
.++.+++.+|||+|||..++-+.+.....-- .+..++++.+|.+.-.-. +..+.+ ..+..+...|.+=..|+.+
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~-i~~l~~~~~~~~~~~~~t~sq~~q~~~ 104 (289)
T smart00489 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKR-LEELRKLMQKVEYESDEESEKQAQLLH 104 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHH-HHHHHhcccccceecccchhHHHHHHH
Confidence 3456789999999999998766653321100 122677787776642111 222221 2334556677776677777
Q ss_pred HHhcc
Q psy12699 867 KSNDR 871 (1269)
Q Consensus 867 ~l~~~ 871 (1269)
++++.
T Consensus 105 el~~~ 109 (289)
T smart00489 105 ELGRE 109 (289)
T ss_pred HHhcc
Confidence 77643
No 408
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=80.12 E-value=3.8 Score=46.91 Aligned_cols=79 Identities=16% Similarity=0.029 Sum_probs=46.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccc---cCCceEEeccCCCCchHHHHHHHhc--CCcEEEEcchHHHHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVY---CGPLKIHAGPTNSGKTYHALERFLS--AESGVYCGPLKMLATEVFK 866 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~---~g~~vlv~apTGsGKTl~~l~~l~~--~~~~lil~Ptr~La~Qi~~ 866 (1269)
.++.+++.+|||+|||..++-+.+.....-- .+..++++.+|.+.-.-. +..+.+ ..+..+...|.+=..|+.+
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~-i~~l~~~~~~~~~~~~~t~sq~~q~~~ 104 (289)
T smart00488 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKR-LEELRKLMQKVEYESDEESEKQAQLLH 104 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHH-HHHHHhcccccceecccchhHHHHHHH
Confidence 3456789999999999998766653321100 122677787776642111 222221 2334556677776677777
Q ss_pred HHhcc
Q psy12699 867 KSNDR 871 (1269)
Q Consensus 867 ~l~~~ 871 (1269)
++++.
T Consensus 105 el~~~ 109 (289)
T smart00488 105 ELGRE 109 (289)
T ss_pred HHhcc
Confidence 77643
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=79.94 E-value=5.2 Score=48.95 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.3
Q ss_pred CCCCeeEEEEeccccc
Q psy12699 905 VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~ 920 (1269)
.+.++++|+||.+-+.
T Consensus 425 ~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 425 RLRDYKLVLIDTAGMG 440 (559)
T ss_pred HhccCCEEEecCCCcc
Confidence 4678999999999775
No 410
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=79.87 E-value=1.2 Score=47.72 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=28.4
Q ss_pred eEEeccCCCCchHHH--HHHHh--cCCcEEEEc--chHHHHHHHHHHH-hccCCC
Q psy12699 827 KIHAGPTNSGKTYHA--LERFL--SAESGVYCG--PLKMLATEVFKKS-NDRGTP 874 (1269)
Q Consensus 827 vlv~apTGsGKTl~~--l~~l~--~~~~~lil~--Ptr~La~Qi~~~l-~~~g~~ 874 (1269)
+++++|||+|||... +.+.+ ++.++.+++ ..|.=|.++.+.+ +.++.+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 678999999998765 33222 255554444 6677676666665 334443
No 411
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.78 E-value=4.7 Score=45.70 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=17.9
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhh
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSA 817 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~ 817 (1269)
.++-++++||+|+|||.. ++..|..
T Consensus 32 ~~~pvLl~G~~GtGKT~l-i~~~l~~ 56 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL-IQNFLSS 56 (272)
T ss_dssp CTEEEEEESSTTSSHHHH-HHHHHHC
T ss_pred cCCcEEEECCCCCchhHH-HHhhhcc
Confidence 456678899999999886 6565443
No 412
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.65 E-value=4.5 Score=50.71 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.9
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++..
T Consensus 116 ~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT 132 (584)
T ss_pred cCCceEEEEECCCcCCH
Confidence 56899999999999954
No 413
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.36 E-value=1.6 Score=54.01 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=29.8
Q ss_pred EEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1018 VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1018 ~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
.++|.+++++|......|.+ +....+++|+..++|-++.
T Consensus 364 ~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 364 QLSGDVPQHKRIKTLEGFRE--GKIRVLVATDVAGRGIHID 402 (475)
T ss_pred EEECCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCccc
Confidence 45678888888887777764 3466888899888887775
No 414
>PHA00350 putative assembly protein
Probab=79.25 E-value=13 Score=44.17 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=14.7
Q ss_pred EEEEECCCCCCcchHHHHH
Q psy12699 795 IIFHAGPTNSGKTYHALER 813 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~ 813 (1269)
+.++.|..|||||+.++..
T Consensus 3 I~l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVY 21 (399)
T ss_pred eEEEecCCCCchhHHHHHH
Confidence 4678888888888887754
No 415
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=79.14 E-value=3.1 Score=45.58 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.7
Q ss_pred cCCCCeeEEEEeccccccc
Q psy12699 904 SVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 904 ~~l~~~~~lViDEah~~~d 922 (1269)
..+..+++++||.+|.+.+
T Consensus 93 ~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 93 DRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHCTSSEEEEETGGGGTT
T ss_pred hhhhcCCEEEEecchhhcC
Confidence 3467899999999999964
No 416
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=79.09 E-value=12 Score=43.08 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccchHHHHHHHHHHH
Q psy12699 207 FQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSC 286 (1269)
Q Consensus 207 ~~G~ll~l~s~~~~a~~~v~~k~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 286 (1269)
..|+++..+++++.+.+.+=.|| . +.=+|+......-+-..+.+|.....-..++.++.-...+...+....+.|
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kk-v----k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKK-V----KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhh-c----CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 57999999999999999998888 3 223344444332222222333222111122222221112212222222222
Q ss_pred HHHHHHHHHHHHhhhccC-ccchhhhhhhHHHHHHHHHhhccC-------cccccccceeehhhhhhhhhhhhhhccC
Q psy12699 287 CMGFILNYSIMLCTQYNS-ALTTTIIGCLKNILLTYLGMFIGG-------DYVYSVNNFIGINISIIGSILYTIVTFK 356 (1269)
Q Consensus 287 v~~~~~~~~~~~~i~~~s-~~t~sv~~~lk~v~~~lls~l~fg-------e~~~s~~~~iG~~iil~G~~l~~~~~~~ 356 (1269)
++--+.+...=..+++.+ ++..++.--+..++.+++-.++.| ... ....++|.+++++|+.+..+.-..
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~-g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPS-GQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCC-chhhhhHHHHHHHHHHHHhHHHHh
Confidence 222111222123455544 333444444444444444444322 222 456788999999999988766443
No 417
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=78.87 E-value=2.6 Score=54.79 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
+.+.+++||||+-++.
T Consensus 437 ~~~~~llIvDEasMv~ 452 (744)
T TIGR02768 437 LSDKDVLVIDEAGMVG 452 (744)
T ss_pred CCCCcEEEEECcccCC
Confidence 4688999999999994
No 418
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=78.85 E-value=6.1 Score=48.14 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=39.8
Q ss_pred CceEEeccCCCCchHHH--H-HHHhc---CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 825 PLKIHAGPTNSGKTYHA--L-ERFLS---AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~--l-~~l~~---~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
..+++.||+|+|||+.+ + ..+.+ +.+++|+. ...+..+....+... .
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~f~~~~~~~~~~~---------~----------------- 183 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFLNDLVDSMKEG---------K----------------- 183 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHhcc---------c-----------------
Confidence 35888888888888776 2 22222 34566654 444555555444310 0
Q ss_pred ccccccCC-CCeeEEEEeccccccc
Q psy12699 899 TVEMTSVN-IPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 899 T~e~~~~l-~~~~~lViDEah~~~d 922 (1269)
..+..... .+.++++|||+|.+.+
T Consensus 184 ~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 184 LNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHHHHHhcCCEEEEechhhhcC
Confidence 00111111 2578999999998854
No 419
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.81 E-value=2.9 Score=48.85 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=13.7
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
+...++++|||+|.+..
T Consensus 100 l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred cccCCEEEEecHhhcch
Confidence 45667999999999953
No 420
>PRK13767 ATP-dependent helicase; Provisional
Probab=78.69 E-value=1.5 Score=58.04 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=31.0
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcc------cccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESG------VYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~------l~~g~~vlv~apT 833 (1269)
..+++++++++|||||||..|+.+++..... ...+-.+++.+||
T Consensus 44 il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 44 IHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred HHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 3467789999999999999987776544311 1123347888887
No 421
>PRK04328 hypothetical protein; Provisional
Probab=78.64 E-value=2.4 Score=47.40 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred cccCCceEEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
+..|..+++.+|+|+|||..+++ .+.++.+++|+. +-+-..++.++++++|..
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 44455566666666666554422 223467778777 344445566666666653
No 422
>PRK00254 ski2-like helicase; Provisional
Probab=78.46 E-value=1.6 Score=56.79 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=35.2
Q ss_pred CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1014 TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1014 ~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..+...|+.+++++|......|.+ +....+++|+..+.|-++.
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~--G~i~VLvaT~tLa~Gvnip 338 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFRE--GLIKVITATPTLSAGINLP 338 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHC--CCCeEEEeCcHHhhhcCCC
Confidence 357788999999999988877875 4677899999999887765
No 423
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=78.38 E-value=3.9 Score=51.69 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=14.5
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++.+
T Consensus 117 ~gk~KVIIIDEad~Ls~ 133 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK 133 (709)
T ss_pred hCCcEEEEEECccccCH
Confidence 56889999999999853
No 424
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=78.33 E-value=1.2 Score=54.93 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.6
Q ss_pred cCCCCeeEEEEeccccccc
Q psy12699 904 SVNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 904 ~~l~~~~~lViDEah~~~d 922 (1269)
+...+.+++||||+|++..
T Consensus 124 P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 124 PLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cccCCcEEEEEEChhhcCH
Confidence 3467899999999999953
No 425
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=78.31 E-value=1.4 Score=56.07 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=26.1
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++|||+|||..+..+.+. .+...++.+||
T Consensus 37 il~g~dvlv~apTGsGKTl~y~lpal~------~~g~tlVisPl 74 (607)
T PRK11057 37 VLSGRDCLVVMPTGGGKSLCYQIPALV------LDGLTLVVSPL 74 (607)
T ss_pred HHcCCCEEEEcCCCchHHHHHHHHHHH------cCCCEEEEecH
Confidence 456788999999999999976444322 22345666665
No 426
>KOG0745|consensus
Probab=78.19 E-value=2 Score=50.13 Aligned_cols=28 Identities=39% Similarity=0.433 Sum_probs=19.7
Q ss_pred ccCCceEEeccCCCCchHHH--HHHHhcCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA--LERFLSAE 849 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~--l~~l~~~~ 849 (1269)
++.-|+++.+|||||||+.+ +..++.-+
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCC
Confidence 55668888888888888876 44444433
No 427
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=78.12 E-value=1.7 Score=55.35 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=27.5
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++|||+|||..+..+.+ ..+...++.+|+
T Consensus 25 il~g~dvlv~~PTG~GKTl~y~lpal------~~~g~~lVisPl 62 (591)
T TIGR01389 25 VLDGRDVLVVMPTGGGKSLCYQVPAL------LLKGLTVVISPL 62 (591)
T ss_pred HHcCCCEEEEcCCCccHhHHHHHHHH------HcCCcEEEEcCC
Confidence 45678899999999999998754442 234456777786
No 428
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=77.84 E-value=7.9 Score=48.64 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=19.2
Q ss_pred ccCceEEEEECCCCCCcchHHHHHH
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.+.-++.+|.|--|+|||+. ++.+
T Consensus 56 ~lPF~~ylITGtAGaGKSts-Iq~L 79 (818)
T PF02689_consen 56 ELPFSVYLITGTAGAGKSTS-IQTL 79 (818)
T ss_pred ccceEEEEEeccCCCCccch-HHHH
Confidence 35567889999999999996 6655
No 429
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=77.80 E-value=1.8 Score=56.23 Aligned_cols=44 Identities=25% Similarity=0.126 Sum_probs=31.2
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
..+.++++++++|||||||..+..+.|..... -.+-..++..||
T Consensus 47 ~il~G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~Pt 90 (742)
T TIGR03817 47 LAHAGRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPT 90 (742)
T ss_pred HHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcCh
Confidence 33567889999999999999987776654311 113356777787
No 430
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=77.76 E-value=2.6 Score=44.36 Aligned_cols=44 Identities=34% Similarity=0.235 Sum_probs=30.3
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCch
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKT 838 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKT 838 (1269)
+..+++|+||+|||+.+...++..... ...+.+++.+||.+-..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~ 68 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAE 68 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHH
Confidence 677999999999999766555443211 11367999999755443
No 431
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.73 E-value=3.2 Score=50.16 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=14.9
Q ss_pred CceEEEEECCCCCCcchHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~a 810 (1269)
+..+++++|++|+|||+.+
T Consensus 94 ~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3467788899999999863
No 432
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=77.59 E-value=3 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.5
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+-.+.|++..+|+|+|||.+|
T Consensus 206 ve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHH
Confidence 456889999999999999887
No 433
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=77.42 E-value=2.4 Score=41.65 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.0
Q ss_pred eeEEEEecccccccC
Q psy12699 909 YEVAVIDEIQMMRDI 923 (1269)
Q Consensus 909 ~~~lViDEah~~~d~ 923 (1269)
.+++++||++++.+.
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 699999999999653
No 434
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=77.41 E-value=3.2 Score=47.85 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=12.7
Q ss_pred CCeeEEEEeccccccc
Q psy12699 907 IPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d 922 (1269)
..-++++|||+|.+.+
T Consensus 80 ~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSP 95 (305)
T ss_pred ccCCEEEEehHhhhCH
Confidence 3456999999999954
No 435
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=77.33 E-value=9.2 Score=47.81 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.8
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
..+.+++||||+|++.
T Consensus 117 ~~~~KVIIIDEad~Lt 132 (605)
T PRK05896 117 TFKYKVYIIDEAHMLS 132 (605)
T ss_pred hCCcEEEEEechHhCC
Confidence 4578999999999995
No 436
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=77.18 E-value=2.4 Score=46.39 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=25.9
Q ss_pred EEEEECCCCCCcchHHHHHHHhhh------cccccCCceEEeccCCC
Q psy12699 795 IIFHAGPTNSGKTYHALERFLSAE------SGVYCGPLKIHAGPTNS 835 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~~l~~~------~~l~~g~~vlv~apTGs 835 (1269)
+.++.||+|+|||+.. ..++... .....++.+++++||..
T Consensus 19 ~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNA 64 (236)
T ss_dssp -EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHH
T ss_pred CEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCch
Confidence 4899999999999863 3333332 12466888999999753
No 437
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.00 E-value=2.6 Score=44.53 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=26.0
Q ss_pred EEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 828 IHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 828 lv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
++.+|+|+|||..+++ .+.++.+++|+. +.+-..++.+++..+|..
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s-~e~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVT-LEESPEELIENAESLGWD 52 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCHHHHHHHHHHcCCC
Confidence 4445555555444321 223467777775 345567777777777664
No 438
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=76.84 E-value=5.9 Score=51.07 Aligned_cols=17 Identities=41% Similarity=0.368 Sum_probs=13.7
Q ss_pred CceEEeccCCCCchHHH
Q psy12699 825 PLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~ 841 (1269)
.++++.+|+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46888888888888776
No 439
>PRK10865 protein disaggregation chaperone; Provisional
Probab=76.79 E-value=10 Score=50.30 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=26.0
Q ss_pred eEEEEecccccccCCc---hhHHHHHHhc-cCcceEEEEeecCChHH
Q psy12699 910 EVAVIDEIQMMRDITR---GWAWTRALLG-LMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 910 ~~lViDEah~~~d~~r---g~~~~~~ll~-l~~~~~~l~~s~~~~~~ 952 (1269)
.+++|||+|.+...+. +....+.+.. +...++.++++++..+.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 3899999999953321 1223344432 23456777787777664
No 440
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=76.73 E-value=8.1 Score=46.43 Aligned_cols=86 Identities=8% Similarity=0.034 Sum_probs=43.3
Q ss_pred cCCcEEEEcchHH-HHHHHHHHHh----ccCCCceeeecceeeeccCCCCCCCEEEEcc-c---cccCCCCeeEEEEecc
Q psy12699 847 SAESGVYCGPLKM-LATEVFKKSN----DRGTPCDLITGEEKKFIQGEEKPANHVACTV-E---MTSVNIPYEVAVIDEI 917 (1269)
Q Consensus 847 ~~~~~lil~Ptr~-La~Qi~~~l~----~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~-e---~~~~l~~~~~lViDEa 917 (1269)
.+.+++++.|+.. |...+++.+. .+|.....-.......-...+.+..|++... + .+.....++.+.+|||
T Consensus 31 ~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~~i~f~g~~d~~~~ik~~~~~~~~~idEa 110 (396)
T TIGR01547 31 KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGKKFIFKGLNDKPNKLKSGAGIAIIWFEEA 110 (396)
T ss_pred CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCeEEEeecccCChhHhhCcceeeeehhhhh
Confidence 4567777878776 5555555554 3444211111111000000111345666554 3 2222445799999999
Q ss_pred cccccCCchhHHHHHHhcc
Q psy12699 918 QMMRDITRGWAWTRALLGL 936 (1269)
Q Consensus 918 h~~~d~~rg~~~~~~ll~l 936 (1269)
..+... .|..++..+
T Consensus 111 ~~~~~~----~~~~l~~rl 125 (396)
T TIGR01547 111 SQLTFE----DIKELIPRL 125 (396)
T ss_pred hhcCHH----HHHHHHHHh
Confidence 999543 555554333
No 441
>PRK05580 primosome assembly protein PriA; Validated
Probab=76.53 E-value=2.1 Score=55.16 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=42.3
Q ss_pred cHHhHHHHHHHHHhc--CCceEEEeCCCCh--hhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 998 SKNDVYTVSRGIESR--GTEVAVIYGSLPP--TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 998 s~~~~~~l~~~L~~~--~~~~~~i~g~l~~--~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
....++++++.|++. +.++..+++++.+ +++...+..|.+ ++...+++|+.+.+|.++.+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~iakG~d~p~ 498 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR--GEADILIGTQMLAKGHDFPN 498 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc--CCCCEEEEChhhccCCCCCC
Confidence 445678888888876 6677778887764 345555555553 46678889999988877763
No 442
>COG1204 Superfamily II helicase [General function prediction only]
Probab=76.42 E-value=1.5 Score=56.57 Aligned_cols=44 Identities=32% Similarity=0.332 Sum_probs=34.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhccccc-CCceEEeccCCCCchHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYC-GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~-g~~vlv~apTGsGKTl~~ 841 (1269)
.++.+++|+|||||||..|+..++.. +.+ |..++-.+|+ |.++.
T Consensus 46 ~~~N~li~aPTgsGKTlIA~lai~~~---l~~~~~k~vYivPl---kALa~ 90 (766)
T COG1204 46 SDENVLISAPTGSGKTLIALLAILST---LLEGGGKVVYIVPL---KALAE 90 (766)
T ss_pred CCCcEEEEcCCCCchHHHHHHHHHHH---HHhcCCcEEEEeCh---HHHHH
Confidence 36778999999999999988777665 344 4678888997 55555
No 443
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=76.41 E-value=7.8 Score=36.09 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=29.1
Q ss_pred HHHHHHH-HHHhhhccCccch-hhhhhhHHHHHHHHHhhccCcccccccceeehhhh
Q psy12699 289 GFILNYS-IMLCTQYNSALTT-TIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINIS 343 (1269)
Q Consensus 289 ~~~~~~~-~~~~i~~~s~~t~-sv~~~lk~v~~~lls~l~fge~~~s~~~~iG~~ii 343 (1269)
+++.++. ...++++.+..+. ++..-+..+.++++|+++|||+ ++..+++|++++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~-~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGES-LSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHhheeeC
Confidence 3334433 3356777655444 7777889999999999999995 599999998764
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.36 E-value=12 Score=44.30 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=17.1
Q ss_pred eccCCcchHHHHHHHHHhcCCce
Q psy12699 400 HVCGEAGAVDLVKAIMMTTNEDV 422 (1269)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (1269)
...-+.+.-+|-|+|-+..||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (436)
T PRK11889 11 MRIKAASKNELYRKLFDQYGTDY 33 (436)
T ss_pred HHHHhhhhhHHHHHHHHHhCCce
Confidence 34445566788899999999875
No 445
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=76.28 E-value=2.1 Score=48.68 Aligned_cols=47 Identities=26% Similarity=0.192 Sum_probs=29.5
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcc-cccCCceEE--eccCCCCchHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESG-VYCGPLKIH--AGPTNSGKTYH 840 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~-l~~g~~vlv--~apTGsGKTl~ 840 (1269)
.++++++|||+||||..|+.-. ....+ +.+.++.-| ..++||+|-..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LA-k~~~~eIIs~DSmQvYr~mdIGTAKps~ 52 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALA-KRLGGEIISLDSMQVYRGLDIGTAKPSL 52 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHH-HHcCCcEEecchhhhcCCCcccCCCCCH
Confidence 4678999999999999876433 22111 334333333 35789999433
No 446
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.26 E-value=4.9 Score=50.06 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|++.+
T Consensus 117 ~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK 133 (527)
T ss_pred cCCceEEEEcCcccCCH
Confidence 56789999999999964
No 447
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=76.19 E-value=4.1 Score=48.84 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.6
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+++.++|++|+|||+.
T Consensus 100 ~~vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTT 116 (429)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 46888999999999986
No 448
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=75.98 E-value=2.5 Score=48.63 Aligned_cols=41 Identities=27% Similarity=0.179 Sum_probs=26.6
Q ss_pred cccCCceEEeccCCCCchHHH--HHHHh-c---CCcEEEEcchHHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA--LERFL-S---AESGVYCGPLKMLA 861 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~--l~~l~-~---~~~~lil~Ptr~La 861 (1269)
+..++++++++|||||||... +.... + ..+++.+--+.|+.
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 345678888888888887654 22222 1 46777777777763
No 449
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=75.88 E-value=0.87 Score=49.48 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred cchhHHHHHHHhHHHHHHHHHH--HHhcccCCcceehhhHHHhhhceeeeecC--CccchHHHHHHHHHHHHHHHHHHHH
Q psy12699 152 LSLPMFTMLRRFSILMTMIAEY--YVLHIVPNRSVKITVGMMIGGAVIAALND--LGYNFQGYVFVLLNNFLTAVNGVYT 227 (1269)
Q Consensus 152 is~s~~~~i~~~~Pift~lls~--l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~--~~~~~~G~ll~l~s~~~~a~~~v~~ 227 (1269)
.+-+..+++.++..+.+.++-. +|.++-+-+.-.++++++++-..+...-. ...-++|+++.++.+++.-.-|+|.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444333332 33344445555666666666555544322 2333578777766666555555553
Q ss_pred HhhcCCCCCCChHHHHHHH
Q psy12699 228 KKKLDPKKDMGKYGLMFYS 246 (1269)
Q Consensus 228 k~~l~~~~~~~~~~l~~~~ 246 (1269)
. ++ +++..+-|+++.+.
T Consensus 127 ~-lL-r~~GAs~WtiLaFc 143 (381)
T PF05297_consen 127 W-LL-RELGASFWTILAFC 143 (381)
T ss_dssp -------------------
T ss_pred H-HH-HHhhhHHHHHHHHH
Confidence 3 45 44567778877664
No 450
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=75.80 E-value=7.9 Score=44.89 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.4
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||||.|..
T Consensus 107 ~~~~kviiidead~mt~ 123 (325)
T COG0470 107 EGGYKVVIIDEADKLTE 123 (325)
T ss_pred CCCceEEEeCcHHHHhH
Confidence 46889999999999953
No 451
>KOG1803|consensus
Probab=75.75 E-value=2.4 Score=51.57 Aligned_cols=30 Identities=7% Similarity=0.202 Sum_probs=24.7
Q ss_pred HHHhcCCcEEEEcchHHHHHHHHHHHhccC
Q psy12699 843 ERFLSAESGVYCGPLKMLATEVFKKSNDRG 872 (1269)
Q Consensus 843 ~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g 872 (1269)
+.+.+++++++|+||.+.+.-+.+++...+
T Consensus 224 qlvk~~k~VLVcaPSn~AVdNiverl~~~~ 253 (649)
T KOG1803|consen 224 QLVKQKKRVLVCAPSNVAVDNIVERLTHLK 253 (649)
T ss_pred HHHHcCCeEEEEcCchHHHHHHHHHhcccc
Confidence 445668999999999999999999986443
No 452
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=75.49 E-value=5.8 Score=51.81 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=14.9
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|+|..
T Consensus 118 ~~~~KV~IIDEad~lt~ 134 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP 134 (824)
T ss_pred cCCceEEEEechhhcCH
Confidence 46899999999999964
No 453
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=75.42 E-value=2.5 Score=49.22 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred cccCCceEEeccCCCCchHHH---HHHHhcCCcEEEEcchHHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA---LERFLSAESGVYCGPLKMLA 861 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~---l~~l~~~~~~lil~Ptr~La 861 (1269)
+..+++++++++||||||... +..+-...+++.+--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccc
Confidence 445677777777777776543 22222245655554555543
No 454
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.29 E-value=31 Score=35.03 Aligned_cols=133 Identities=11% Similarity=0.017 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhhcccccCCCC--hhhhHhhhhhHHHHHHH
Q psy12699 64 KISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYH--RNIFFELMPLPFIYLGN 141 (1269)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~nK~~l~~~~f~~~~~l~~~q~~~~~lll~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 141 (1269)
.++..+.-+.+....+-+|-.+-...+ .|..-.+..++...+++.+...... +.+... .+..++.+.-|++..+.
T Consensus 6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~-~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 6 YLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQ-GHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhc-CCCchhhccCCchHHHHccchhhhh
Confidence 344455556666666666766665544 3444556666666655544443321 222222 23233334445666666
Q ss_pred hhhccccccccchhHHHHH-HHhHHHHHHHHHHHHh----cccCCcceehhhHHHhhhceeee
Q psy12699 142 MVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVL----HIVPNRSVKITVGMMIGGAVIAA 199 (1269)
Q Consensus 142 ~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~----~ek~~~~~~~~i~l~~~Gv~l~~ 199 (1269)
...+......+.++..+++ -+-..+.-+++..+=. ++++++.++++++++++|+.++.
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6555555566665554443 3334555555555422 47889999999999999965543
No 455
>PRK05973 replicative DNA helicase; Provisional
Probab=75.21 E-value=4.8 Score=44.43 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=26.8
Q ss_pred cccCCceEEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
+..|.-+++.|++|+|||..+++ ...++.+++|+.- -+=..|+.+++..+|.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~g~ 116 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRALGA 116 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHcCC
Confidence 33444444555555555544422 2234667777762 1224577777776664
No 456
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.13 E-value=5 Score=50.11 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=14.1
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
+.++++|+|||+|.+..
T Consensus 375 y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 375 YREMDILLVDDIQFLED 391 (617)
T ss_pred hhcCCEEEEehhccccC
Confidence 45689999999999954
No 457
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.05 E-value=1.7 Score=53.77 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhc--CCceEEEeCCCChhhH--HHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1001 DVYTVSRGIESR--GTEVAVIYGSLPPTTK--LAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1001 ~~~~l~~~L~~~--~~~~~~i~g~l~~~~r--~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.++++.+.|++. +.++..++++.....+ ...+..|.+ +....++.|+.+.+|.++.+
T Consensus 270 Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~i~kG~d~~~ 330 (505)
T TIGR00595 270 GTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADILIGTQMIAKGHHFPN 330 (505)
T ss_pred cHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEEEeCcccccCCCCCc
Confidence 356677777765 5677788888776544 444444543 45678888998888877763
No 458
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.78 E-value=2.5 Score=48.95 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=22.3
Q ss_pred cccCCceEEeccCCCCchHHH--H-HHHh---cCCcEEEEcchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA--L-ERFL---SAESGVYCGPLKML 860 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~--l-~~l~---~~~~~lil~Ptr~L 860 (1269)
+..+++++++++||||||... + ..+. .+.+.+.+-.+.||
T Consensus 141 v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 344667777777777776543 2 2221 23456666666665
No 459
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=74.74 E-value=2.8 Score=55.67 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=37.0
Q ss_pred HhHHHHhhhccCCCCCeeEEEEcCcccccccc---CceEEEEcCCCCC
Q psy12699 1077 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNL---SIRRVIFYSLIKP 1121 (1269)
Q Consensus 1077 ~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi---~v~~VI~~~~~k~ 1121 (1269)
.+|.++++.|+ +++..||+||+.+.+|||+ ....||..+++.+
T Consensus 712 ~~r~~ll~~F~--~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 712 GSRAKIKKRFN--NGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred ccHHHHHHHHH--hCCCeEEEEcceeecccccCCCceEEEEEeCCCCC
Confidence 57889999999 8889999999999999999 4557888887554
No 460
>PRK06835 DNA replication protein DnaC; Validated
Probab=74.64 E-value=4.7 Score=46.93 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=44.4
Q ss_pred cCCceEEeccCCCCchHHH---HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEc
Q psy12699 823 CGPLKIHAGPTNSGKTYHA---LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACT 899 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~---l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T 899 (1269)
.++++++.||||+|||+.+ ...+...+..++..+..+|..++...... .... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~---------~~~~---------------~ 237 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFN---------NDKE---------------L 237 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhc---------cchh---------------H
Confidence 3578999999999999876 22233334445556666776665442100 0000 0
Q ss_pred cccccCCCCeeEEEEecccccc
Q psy12699 900 VEMTSVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 900 ~e~~~~l~~~~~lViDEah~~~ 921 (1269)
.+.+..+.++++||||+.+...
T Consensus 238 ~~~~~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 238 EEVYDLLINCDLLIIDDLGTEK 259 (329)
T ss_pred HHHHHHhccCCEEEEeccCCCC
Confidence 0113446788999999998763
No 461
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=74.63 E-value=6.8 Score=49.57 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.6
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|+|..
T Consensus 117 ~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR 133 (647)
T ss_pred cCCCEEEEEechHhCCH
Confidence 45899999999999964
No 462
>KOG0340|consensus
Probab=74.58 E-value=3.5 Score=46.83 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=32.1
Q ss_pred EEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1017 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1017 ~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..+|+.++|.+|.+.+..|.. +....|++||...+|.++.
T Consensus 282 ~~lHs~m~Q~eR~~aLsrFrs--~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 282 VSLHSQMPQKERLAALSRFRS--NAARILIATDVASRGLDIP 321 (442)
T ss_pred eehhhcchHHHHHHHHHHHhh--cCccEEEEechhhcCCCCC
Confidence 346788999999999877753 4567889999999998876
No 463
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=74.48 E-value=9.1 Score=51.28 Aligned_cols=47 Identities=15% Similarity=0.069 Sum_probs=37.6
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh-----cCCcEEEEcchHHHHHHHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL-----SAESGVYCGPLKMLATEVFK 866 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~-----~~~~~lil~Ptr~La~Qi~~ 866 (1269)
.+-+++.+++.||||+|||++|+.... .+++++|..+|+.|-.|+.+
T Consensus 272 ~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 272 ALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred HHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHH
Confidence 345678899999999999999943322 47889999999999999864
No 464
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.44 E-value=6.3 Score=49.46 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=14.1
Q ss_pred CCCeeEEEEecccccc
Q psy12699 906 NIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 906 l~~~~~lViDEah~~~ 921 (1269)
..+.+++||||+|++.
T Consensus 117 ~g~~kVIIIDEad~Lt 132 (624)
T PRK14959 117 EGRYKVFIIDEAHMLT 132 (624)
T ss_pred cCCceEEEEEChHhCC
Confidence 5678999999999994
No 465
>KOG0060|consensus
Probab=74.40 E-value=2.6 Score=51.13 Aligned_cols=54 Identities=28% Similarity=0.341 Sum_probs=34.2
Q ss_pred CccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHH
Q psy12699 782 AEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 782 ~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
.+.+|....+.-..+-++.||+ |-+. ++.+ . -.+.+|+++++++|+|+|||-..
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~-g~~l--ie~L-s--~~V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTN-GDLL--IENL-S--LEVPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred cccccccceEEeeeeeecCCCC-Ccee--eeee-e--eEecCCCeEEEECCCCCchhHHH
Confidence 3344444444444455677887 6444 2222 1 14678999999999999999664
No 466
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.23 E-value=6.7 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.3
Q ss_pred CCCCeeEEEEeccccccc
Q psy12699 905 VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~d 922 (1269)
...+++++||||+|++..
T Consensus 116 ~~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLST 133 (576)
T ss_pred ccCCceEEEEEChhhCCH
Confidence 457899999999999954
No 467
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.22 E-value=6 Score=49.13 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.8
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||+|++.+
T Consensus 117 ~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK 133 (546)
T ss_pred cCCcEEEEEechhhccH
Confidence 56889999999999964
No 468
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.95 E-value=6.7 Score=46.76 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=20.1
Q ss_pred chHHHHHHHHHhcCCceEEEeecccCc
Q psy12699 406 GAVDLVKAIMMTTNEDVEVYKYKRLTE 432 (1269)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ 432 (1269)
+-++-|.+|-+..||++.|.+.++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (432)
T PRK12724 10 SYQDCLMEMKMKYGSEATVISQTVVTE 36 (432)
T ss_pred cHHHHHHHHHHHhCCceeEeeeeeccc
Confidence 456678888888888888877766543
No 469
>KOG0991|consensus
Probab=73.86 E-value=1 Score=48.10 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.9
Q ss_pred CCeeEEEEeccccccc
Q psy12699 907 IPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d 922 (1269)
.+.+.+|+||||-|.+
T Consensus 112 grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA 127 (333)
T ss_pred CceeEEEeeccchhhh
Confidence 5788999999999964
No 470
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=73.84 E-value=2.7 Score=49.70 Aligned_cols=34 Identities=38% Similarity=0.450 Sum_probs=24.0
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
..+++++|||||||..++.+.+. .+...++..||
T Consensus 15 ~~~~i~apTGsGKT~~~~~~~l~------~~~~~~~~~P~ 48 (357)
T TIGR03158 15 DIIFNTAPTGAGKTLAWLTPLLH------GENDTIALYPT 48 (357)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH------cCCCEEEEeCh
Confidence 35789999999999987766542 22345666666
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.62 E-value=19 Score=43.97 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHhcCCceEEEeecccCcccccccccCCCCCCCCCCEEEEEehhhHHhhh
Q psy12699 405 AGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTHQ 464 (1269)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 464 (1269)
.+..+.+++.-+..|++..|- +=+.+..|=-|+||+-.|+=++.
T Consensus 9 ~~~~~~~~~~~~~~g~~~~~l----------------~~~~~~~~~~i~a~~~~~~~~~~ 52 (484)
T PRK06995 9 KTSRDALRLVREALGADAVIL----------------SNRAVDGGVEIVALADSDLAALA 52 (484)
T ss_pred ccHHHHHHHHHHHhCCCeEEE----------------eccccCCceeEEeecHhHHHhhc
Confidence 456677888888888887763 22345788889999999987665
No 472
>PRK09183 transposase/IS protein; Provisional
Probab=73.55 E-value=4.9 Score=45.21 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=29.1
Q ss_pred cccCCceEEeccCCCCchHHH--HH--HHhcCCcEEEEcchHHHHHHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA--LE--RFLSAESGVYCGPLKMLATEVF 865 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~--l~--~l~~~~~~lil~Ptr~La~Qi~ 865 (1269)
+..|.++++.+|+|+|||..+ +. +...+.++.++ +..+|..++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l~ 146 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQLS 146 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHHH
Confidence 566889999999999999876 21 22335566554 4556665554
No 473
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=73.16 E-value=2.9 Score=50.04 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=31.0
Q ss_pred eEEeccCCCCchHHH-HHHHh-cCCcEEEEcchHHHHHHHHHHHhccCCCcee
Q psy12699 827 KIHAGPTNSGKTYHA-LERFL-SAESGVYCGPLKMLATEVFKKSNDRGTPCDL 877 (1269)
Q Consensus 827 vlv~apTGsGKTl~~-l~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~ 877 (1269)
+++.||||||||..+ +..++ ....++++=|--|+........++.|.+|-+
T Consensus 2 ~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v 54 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFV 54 (384)
T ss_pred eeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEE
Confidence 455556666665443 11222 2467777779999998877776666655444
No 474
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=73.01 E-value=14 Score=49.09 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=25.6
Q ss_pred eeEEEEecccccccCCc--h-hHHHHHHhc-cCcceEEEEeecCChHH
Q psy12699 909 YEVAVIDEIQMMRDITR--G-WAWTRALLG-LMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 909 ~~~lViDEah~~~d~~r--g-~~~~~~ll~-l~~~~~~l~~s~~~~~~ 952 (1269)
-.+++|||+|.+...+. | ......+.. +....+.++++++..+.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 45899999999953221 1 123333332 23356777777776654
No 475
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.95 E-value=3.4 Score=47.79 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=17.9
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhh
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSA 817 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~ 817 (1269)
++-++++|+||||||+- +.+++..
T Consensus 144 ~~nilI~G~tGSGKTTl-l~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTL-ANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHH
Confidence 44578999999999996 5555443
No 476
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.53 E-value=2.4 Score=48.00 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=0.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhh
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSA 817 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~ 817 (1269)
.+..++++|+||||||+. +.+++..
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~ 150 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEE 150 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHH
T ss_pred cceEEEEECCCccccchH-HHHHhhh
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.52 E-value=6.2 Score=43.72 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=23.0
Q ss_pred cccCCceEEeccCCCCchHHHH----HHHhc-CCcEEEEc---chHHHHHHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHAL----ERFLS-AESGVYCG---PLKMLATEVF 865 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l----~~l~~-~~~~lil~---Ptr~La~Qi~ 865 (1269)
+..|+-+++.|++|+|||..++ ..... +.+++|+. |..++...+.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH
Confidence 3344444455555555544331 12233 67778877 6666665543
No 478
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.48 E-value=10 Score=47.69 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.7
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+++++||||+|+|..
T Consensus 122 ~gr~KViIIDEah~Ls~ 138 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN 138 (700)
T ss_pred cCCceEEEEEChHhcCH
Confidence 45799999999999964
No 479
>PRK08233 hypothetical protein; Provisional
Probab=72.39 E-value=2.3 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~a 810 (1269)
+..++.+.|++|||||+.+
T Consensus 2 ~~~iI~I~G~~GsGKtTla 20 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLT 20 (182)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4467888999999999974
No 480
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.34 E-value=3.4 Score=44.45 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=11.5
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++||||||||+.
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 467788888888885
No 481
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=72.26 E-value=10 Score=48.26 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred ceEEeccCCCCchHHH---HHHHhc---CCcEEEEcchHHHHHHHHHHH----hccCCCcee--ee-cceeeeccCCCCC
Q psy12699 826 LKIHAGPTNSGKTYHA---LERFLS---AESGVYCGPLKMLATEVFKKS----NDRGTPCDL--IT-GEEKKFIQGEEKP 892 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~---l~~l~~---~~~~lil~Ptr~La~Qi~~~l----~~~g~~v~~--~~-G~~~~~~~~~~~~ 892 (1269)
-+++.|.-|=|||.+. +..+.. ..++++.+|+.+-++++++.. ...|.+-.+ -. |.... .....
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~---~~~~~ 309 (758)
T COG1444 233 ALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIRE---VSGDG 309 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccceee---ecCCc
Confidence 5889999999999765 222222 348999999999988887554 334543211 11 22111 11113
Q ss_pred CCEEEEccccccCCCCeeEEEEeccccc
Q psy12699 893 ANHVACTVEMTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 893 ~~Ivv~T~e~~~~l~~~~~lViDEah~~ 920 (1269)
..|-+-.|+... .. -+++|||||=.+
T Consensus 310 ~~i~y~~P~~a~-~~-~DllvVDEAAaI 335 (758)
T COG1444 310 FRIEYVPPDDAQ-EE-ADLLVVDEAAAI 335 (758)
T ss_pred eeEEeeCcchhc-cc-CCEEEEehhhcC
Confidence 346666676555 33 899999999877
No 482
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.96 E-value=4.2 Score=50.24 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=39.8
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh----cCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL----SAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~----~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
|+..|.-+++.+|+|+|||..+++.+. ++.+++|+. .-|-..|+.++.+.+|..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGID 316 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 566778889999999999887744433 366888887 455567888888877764
No 483
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=71.86 E-value=5.9 Score=50.04 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=40.0
Q ss_pred CCceEEeccCCCCchHHH-HHHHhc-CCcEEEEcchHHHHHHHHHHHhccC-CCcee
Q psy12699 824 GPLKIHAGPTNSGKTYHA-LERFLS-AESGVYCGPLKMLATEVFKKSNDRG-TPCDL 877 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~-l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g-~~v~~ 877 (1269)
..++++.||||||||... +..++. +..++++=|-.|+.......-++.| .+|-+
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~v 267 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIV 267 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEE
Confidence 468999999999999866 444455 6677888899999887776656565 44443
No 484
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=71.81 E-value=4.7 Score=44.31 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=30.1
Q ss_pred ccccCCceEEeccCCCCchHHHHH----HHhcCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALE----RFLSAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~----~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
|+..|..+++.+|+|+|||..+.+ .+.++.+++|+.- -+-..++.++.+++|.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~ 72 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGM 72 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCC
Confidence 455566677777777777665522 2234566766662 3334555555555554
No 485
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=71.77 E-value=4.9 Score=44.35 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=10.4
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
+.+.+|+||.=...
T Consensus 117 ~~~~lVIDe~t~~l 130 (230)
T PRK08533 117 EKDVIIIDSLSSLI 130 (230)
T ss_pred CCCEEEEECccHHh
Confidence 56888999877653
No 486
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=71.68 E-value=7.1 Score=39.48 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=53.6
Q ss_pred EcCCCCHHhHHHHhhhccCCCCC-eeEEEEcCcccccccc---CceEEEEcCCCCCC-ccc-----------CC-ccc--
Q psy12699 1070 IYGSLPPTTKLAQASKFNDPDNP-CKVMVATDAIGMGLNL---SIRRVIFYSLIKPS-LNE-----------KG-ERE-- 1130 (1269)
Q Consensus 1070 ~Hg~l~~~eR~~v~~~F~~~~g~-~~VLVaTdv~~~GIDi---~v~~VI~~~~~k~~-~~~-----------~G-~~~-- 1130 (1269)
+.-+....+...+++.|+ +.. ..||++|.-...|||+ ..+.||..+++.+. .++ .+ ...
T Consensus 27 ~~e~~~~~~~~~~l~~f~--~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 27 LVQGEDGKETGKLLEKYV--EACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred EEeCCChhHHHHHHHHHH--HcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 344455556788899998 332 3799999889999999 36889999987654 111 11 111
Q ss_pred --cccCCHhHHHHHhcccCCCCCc
Q psy12699 1131 --IDLISVSAALQIAGRAGRFNTH 1152 (1269)
Q Consensus 1131 --~~p~s~~~y~QR~GRaGR~G~~ 1152 (1269)
..|.......|-+||.=|..++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D 128 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND 128 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc
Confidence 1134456677888888886554
No 487
>PHA02653 RNA helicase NPH-II; Provisional
Probab=71.61 E-value=2.8 Score=53.45 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.0
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+.+|++++++|+||||||.+.
T Consensus 176 i~~gkdvIv~A~TGSGKTtqv 196 (675)
T PHA02653 176 WISRKPVVLTGGTGVGKTSQV 196 (675)
T ss_pred HHhCCCEEEECCCCCCchhHH
Confidence 578999999999999999764
No 488
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.54 E-value=9.8 Score=46.88 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.1
Q ss_pred CCCCeeEEEEeccccccc
Q psy12699 905 VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~d 922 (1269)
...+.+++||||+|++..
T Consensus 116 ~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 116 IKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred ccCCeeEEEEEChhhcCH
Confidence 356889999999999953
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=71.46 E-value=4.2 Score=45.76 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=32.7
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHhc----CCcEEEEcchHHHHHHHHHHHhccCCCc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFLS----AESGVYCGPLKMLATEVFKKSNDRGTPC 875 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~~----~~~~lil~Ptr~La~Qi~~~l~~~g~~v 875 (1269)
|+..|+.+++.+++|||||..+++.+.+ +.+++|+. +.+...++.+.+.++|...
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS-TEESPEELLENARSFGWDL 77 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE-ecCCHHHHHHHHHHcCCCH
Confidence 3455666666666666666555333332 45556555 4666667777777676644
No 490
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=71.40 E-value=2.8 Score=55.49 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=27.9
Q ss_pred cccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
..+.+++++++.|||+|||..|..+.|. .+.-.+|.+|+
T Consensus 471 aiL~GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPL 509 (1195)
T PLN03137 471 ATMSGYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPL 509 (1195)
T ss_pred HHHcCCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCH
Confidence 4467899999999999999987444432 23346666664
No 491
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=71.22 E-value=4.4 Score=46.99 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=19.8
Q ss_pred cCCceEEeccCCCCchHHH--HH-HH---hcCCcEEEEcchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA--LE-RF---LSAESGVYCGPLKML 860 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~--l~-~l---~~~~~~lil~Ptr~L 860 (1269)
.+++++++++||||||... +. .+ ....+.+++-.+.||
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 4455555555555555332 11 11 124567777777776
No 492
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=71.12 E-value=10 Score=40.16 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.1
Q ss_pred CCCCeeEEEEeccccccc
Q psy12699 905 VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~d 922 (1269)
......++||||+|.+.+
T Consensus 93 ~~~~~kviiide~~~l~~ 110 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE 110 (188)
T ss_pred ccCCeEEEEEechhhhCH
Confidence 357889999999999954
No 493
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=70.93 E-value=4.7 Score=51.91 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=33.0
Q ss_pred CCceEEeccCCCCchHHH---HHHHhc-----CCcEEEEcchHHHHHHHHHHHhc
Q psy12699 824 GPLKIHAGPTNSGKTYHA---LERFLS-----AESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~---l~~l~~-----~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
..+++|.|..|||||.+. +..+.. ..+++++..||..|.++.+|+.+
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 345667777777776655 222221 35789999999999999999864
No 494
>PRK09401 reverse gyrase; Reviewed
Probab=70.92 E-value=3 Score=56.60 Aligned_cols=43 Identities=26% Similarity=0.125 Sum_probs=30.8
Q ss_pred ccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 788 ARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 788 ~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++++|||+|||..+++..+.. ...|...++..||
T Consensus 90 ~~il~g~dv~i~ApTGsGKT~f~l~~~~~l---~~~g~~alIL~PT 132 (1176)
T PRK09401 90 KRLLLGESFAIIAPTGVGKTTFGLVMSLYL---AKKGKKSYIIFPT 132 (1176)
T ss_pred HHHHCCCcEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecc
Confidence 355688999999999999997544433222 1246778888887
No 495
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=70.85 E-value=4.1 Score=48.15 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=12.8
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..++++||||||||+.
T Consensus 150 GlilI~G~TGSGKTT~ 165 (372)
T TIGR02525 150 GLGLICGETGSGKSTL 165 (372)
T ss_pred CEEEEECCCCCCHHHH
Confidence 4567889999999885
No 496
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=70.83 E-value=5.8 Score=49.26 Aligned_cols=30 Identities=13% Similarity=-0.110 Sum_probs=22.9
Q ss_pred CCCeeEEEEecccccccCCchhHHHHHHhc
Q psy12699 906 NIPYEVAVIDEIQMMRDITRGWAWTRALLG 935 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d~~rg~~~~~~ll~ 935 (1269)
+.+-+++|+|||=.-+|++-...+-..+..
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 889999999999988887655555554444
No 497
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=70.82 E-value=3.2 Score=56.46 Aligned_cols=43 Identities=26% Similarity=0.134 Sum_probs=30.7
Q ss_pred ccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 788 ARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 788 ~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.+.++++++++|||||||+-+++..... ...|..+++..||
T Consensus 88 ~~il~G~d~vi~ApTGsGKT~f~l~~~~~l---~~~g~~vLIL~PT 130 (1171)
T TIGR01054 88 KRVLRGDSFAIIAPTGVGKTTFGLAMSLFL---AKKGKRCYIILPT 130 (1171)
T ss_pred HHHhCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEeCH
Confidence 356788999999999999998554433221 1236678888887
No 498
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.77 E-value=9.8 Score=47.06 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=14.4
Q ss_pred CCCCeeEEEEecccccc
Q psy12699 905 VNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~~ 921 (1269)
...+.+++||||+|.+.
T Consensus 113 ~~~~~kVVIIDEad~ls 129 (504)
T PRK14963 113 LRGGRKVYILDEAHMMS 129 (504)
T ss_pred ccCCCeEEEEECccccC
Confidence 35688999999999884
No 499
>KOG0350|consensus
Probab=70.60 E-value=2.3 Score=50.32 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=45.8
Q ss_pred CCEEEEe-cHHhHHHHHHHHH----hcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 991 GDCIVCF-SKNDVYTVSRGIE----SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 991 g~~iv~~-s~~~~~~l~~~L~----~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..+++|. +...+.+++..|+ +...++....|.+....|...+..|.. +....|+++|...+|-+..
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~ 500 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK--GDINVLICSDALARGIDVN 500 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc--CCceEEEehhhhhcCCccc
Confidence 3566666 7777888887776 234455555578888888887766653 4556788888888886665
No 500
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=70.43 E-value=9.8 Score=49.62 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=25.0
Q ss_pred eEEEEecccccccCCc---h-hHHHHHH-hccCcceEEEEeecCChH
Q psy12699 910 EVAVIDEIQMMRDITR---G-WAWTRAL-LGLMAKEIHVCGEAGAVD 951 (1269)
Q Consensus 910 ~~lViDEah~~~d~~r---g-~~~~~~l-l~l~~~~~~l~~s~~~~~ 951 (1269)
.+++|||+|.+...+. | ....+.+ -.+...++.++++++..+
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 4799999999954321 1 2223333 233445778888877643
Done!