Query psy12699
Match_columns 1269
No_of_seqs 974 out of 5902
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:25:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 100.0 1.2E-59 4.2E-64 586.5 42.8 496 511-1269 13-508 (677)
2 2db3_A ATP-dependent RNA helic 100.0 1.5E-33 5.3E-38 340.1 25.1 276 821-1164 90-409 (434)
3 2j0s_A ATP-dependent RNA helic 100.0 4.1E-31 1.4E-35 317.0 19.4 275 821-1162 71-383 (410)
4 2i4i_A ATP-dependent RNA helic 100.0 9.2E-31 3.2E-35 314.6 21.0 276 821-1163 49-384 (417)
5 2v1x_A ATP-dependent DNA helic 100.0 2.6E-30 8.7E-35 321.1 25.5 274 821-1162 56-374 (591)
6 3eiq_A Eukaryotic initiation f 100.0 1.2E-30 4.2E-35 313.1 20.0 275 821-1162 74-387 (414)
7 1s2m_A Putative ATP-dependent 100.0 4.4E-30 1.5E-34 306.9 22.0 275 821-1162 55-365 (400)
8 4f92_B U5 small nuclear ribonu 100.0 1.4E-30 4.7E-35 354.3 19.8 319 821-1161 92-472 (1724)
9 3pey_A ATP-dependent RNA helic 100.0 9.5E-30 3.2E-34 303.0 24.6 275 825-1162 45-356 (395)
10 3fht_A ATP-dependent RNA helic 100.0 1E-29 3.5E-34 304.7 24.8 277 824-1162 64-379 (412)
11 1oyw_A RECQ helicase, ATP-depe 100.0 5.3E-30 1.8E-34 315.2 21.2 274 821-1162 37-343 (523)
12 3i5x_A ATP-dependent RNA helic 100.0 2.8E-30 9.6E-35 322.9 18.3 276 823-1162 110-449 (563)
13 1xti_A Probable ATP-dependent 100.0 5.5E-30 1.9E-34 304.9 19.6 275 821-1162 42-357 (391)
14 1hv8_A Putative ATP-dependent 100.0 9.6E-30 3.3E-34 299.8 21.1 272 822-1162 41-345 (367)
15 3l9o_A ATP-dependent RNA helic 100.0 3.9E-30 1.3E-34 338.8 18.4 316 821-1162 196-597 (1108)
16 2xgj_A ATP-dependent RNA helic 100.0 6.1E-30 2.1E-34 334.1 19.2 313 821-1162 98-499 (1010)
17 3fmp_B ATP-dependent RNA helic 100.0 2.7E-30 9.2E-35 316.4 14.8 277 824-1162 131-446 (479)
18 3sqw_A ATP-dependent RNA helic 100.0 7.6E-30 2.6E-34 319.4 18.4 276 823-1162 59-398 (579)
19 2z0m_A 337AA long hypothetical 100.0 5.7E-30 1.9E-34 298.1 15.7 269 821-1160 28-321 (337)
20 2va8_A SSO2462, SKI2-type heli 100.0 8E-29 2.7E-33 318.1 22.5 311 821-1161 43-407 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 6.9E-29 2.3E-33 317.7 21.6 307 822-1161 38-387 (702)
22 1fuu_A Yeast initiation factor 100.0 3.3E-30 1.1E-34 307.1 8.7 275 821-1162 55-366 (394)
23 4f92_B U5 small nuclear ribonu 100.0 1.2E-29 4E-34 345.1 14.8 310 823-1161 941-1307(1724)
24 3o8b_A HCV NS3 protease/helica 100.0 8.5E-29 2.9E-33 304.8 19.5 245 848-1166 257-518 (666)
25 4a4z_A Antiviral helicase SKI2 100.0 3.5E-28 1.2E-32 317.7 26.0 312 821-1157 51-487 (997)
26 2zj8_A DNA helicase, putative 100.0 1E-28 3.6E-33 316.9 20.6 310 821-1161 36-386 (720)
27 3fho_A ATP-dependent RNA helic 100.0 4.1E-29 1.4E-33 307.3 15.0 275 825-1162 159-470 (508)
28 3oiy_A Reverse gyrase helicase 99.9 6.1E-28 2.1E-32 289.9 12.7 263 821-1159 33-362 (414)
29 2eyq_A TRCF, transcription-rep 99.9 3.2E-27 1.1E-31 313.1 20.5 292 826-1186 626-952 (1151)
30 2whx_A Serine protease/ntpase/ 99.9 1.2E-27 4E-32 298.1 15.1 272 822-1160 184-476 (618)
31 2xau_A PRE-mRNA-splicing facto 99.9 4.1E-27 1.4E-31 300.3 18.7 271 848-1162 140-443 (773)
32 1yks_A Genome polyprotein [con 99.9 3.1E-27 1.1E-31 284.5 14.4 264 820-1159 4-296 (440)
33 2jlq_A Serine protease subunit 99.9 8.4E-27 2.9E-31 282.0 18.2 245 847-1159 47-308 (451)
34 1gm5_A RECG; helicase, replica 99.9 6E-27 2E-31 296.6 14.5 283 826-1162 391-697 (780)
35 2v6i_A RNA helicase; membrane, 99.9 1.4E-26 4.8E-31 278.2 16.8 271 824-1162 2-291 (431)
36 4a2p_A RIG-I, retinoic acid in 99.9 1.6E-26 5.5E-31 288.3 17.8 104 821-924 19-146 (556)
37 2z83_A Helicase/nucleoside tri 99.9 1.4E-26 4.8E-31 280.5 14.2 273 821-1162 18-313 (459)
38 3tbk_A RIG-I helicase domain; 99.9 1.6E-26 5.5E-31 288.1 14.7 79 1066-1162 427-507 (555)
39 2wv9_A Flavivirin protease NS2 99.9 3.6E-26 1.2E-30 286.2 17.4 270 823-1159 240-530 (673)
40 1tf5_A Preprotein translocase 99.9 1.4E-25 4.8E-30 277.7 17.1 297 821-1164 95-547 (844)
41 2ykg_A Probable ATP-dependent 99.9 4.5E-26 1.5E-30 292.2 12.8 103 821-923 25-151 (696)
42 1wp9_A ATP-dependent RNA helic 99.9 2.9E-25 9.9E-30 271.4 17.3 81 1064-1161 385-474 (494)
43 4ddu_A Reverse gyrase; topoiso 99.9 1.2E-25 4.2E-30 296.0 14.0 238 821-1120 90-388 (1104)
44 4a2q_A RIG-I, retinoic acid in 99.9 4.2E-25 1.4E-29 286.2 18.6 105 820-924 259-387 (797)
45 2oca_A DAR protein, ATP-depend 99.9 1.6E-25 5.3E-30 276.4 13.1 286 821-1154 125-447 (510)
46 4gl2_A Interferon-induced heli 99.9 6.2E-26 2.1E-30 291.1 9.4 102 821-922 19-150 (699)
47 2fwr_A DNA repair protein RAD2 99.9 1.6E-25 5.5E-30 273.5 12.2 275 821-1155 105-445 (472)
48 4a2w_A RIG-I, retinoic acid in 99.9 1.3E-24 4.6E-29 284.4 18.5 104 821-924 260-387 (936)
49 2fsf_A Preprotein translocase 99.9 6.1E-25 2.1E-29 271.0 13.4 101 822-924 87-211 (853)
50 1gku_B Reverse gyrase, TOP-RG; 99.9 4.7E-25 1.6E-29 290.9 12.9 235 821-1119 68-352 (1054)
51 1nkt_A Preprotein translocase 99.9 5.3E-24 1.8E-28 262.7 15.0 296 822-1164 124-619 (922)
52 3h1t_A Type I site-specific re 99.9 2.4E-22 8.3E-27 252.2 15.6 259 825-1151 199-545 (590)
53 3dmq_A RNA polymerase-associat 99.9 1.7E-21 5.9E-26 255.2 15.3 80 1063-1158 527-609 (968)
54 1z63_A Helicase of the SNF2/RA 99.8 1.8E-19 6E-24 221.7 17.1 76 1064-1155 366-444 (500)
55 3jux_A Protein translocase sub 99.8 7.6E-18 2.6E-22 203.5 20.1 87 1060-1164 494-589 (822)
56 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.8E-17 1.3E-21 212.3 15.2 303 824-1160 300-707 (1038)
57 3mwy_W Chromo domain-containin 99.7 2.6E-16 9E-21 203.2 21.0 316 822-1155 253-675 (800)
58 1z3i_X Similar to RAD54-like; 99.7 2.1E-16 7.3E-21 199.1 19.0 78 1062-1155 438-519 (644)
59 1c4o_A DNA nucleotide excision 99.7 3.8E-15 1.3E-19 187.4 25.8 89 1064-1164 463-552 (664)
60 3eaq_A Heat resistant RNA depe 99.7 1.8E-16 6.2E-21 171.3 11.2 107 989-1162 30-138 (212)
61 2hjv_A ATP-dependent RNA helic 99.7 2.3E-16 7.9E-21 163.1 10.8 107 989-1162 34-142 (163)
62 2rb4_A ATP-dependent RNA helic 99.6 3.2E-16 1.1E-20 164.1 10.5 114 988-1162 32-147 (175)
63 3iuy_A Probable ATP-dependent 99.6 7E-16 2.4E-20 168.9 12.5 139 821-959 54-218 (228)
64 1t5i_A C_terminal domain of A 99.6 3.7E-16 1.3E-20 163.0 9.3 107 989-1162 30-138 (172)
65 3fe2_A Probable ATP-dependent 99.6 8.5E-16 2.9E-20 169.8 11.0 140 821-960 63-228 (242)
66 2p6n_A ATP-dependent RNA helic 99.6 5.8E-16 2E-20 164.2 9.2 80 1067-1162 81-161 (191)
67 1fuk_A Eukaryotic initiation f 99.6 5.4E-16 1.8E-20 160.7 8.5 108 988-1162 28-137 (165)
68 2jgn_A DBX, DDX3, ATP-dependen 99.6 6.8E-16 2.3E-20 162.9 8.9 81 1066-1162 72-153 (185)
69 3i32_A Heat resistant RNA depe 99.6 6.8E-16 2.3E-20 174.8 9.4 108 989-1163 27-136 (300)
70 3ly5_A ATP-dependent RNA helic 99.6 7.3E-16 2.5E-20 172.4 9.5 139 821-959 88-252 (262)
71 1vec_A ATP-dependent RNA helic 99.6 3.1E-15 1.1E-19 160.9 12.7 144 821-964 37-203 (206)
72 3fmo_B ATP-dependent RNA helic 99.6 4.4E-15 1.5E-19 169.3 14.1 138 822-960 127-288 (300)
73 1q0u_A Bstdead; DEAD protein, 99.6 2.4E-15 8.1E-20 163.6 11.1 146 821-966 38-209 (219)
74 2pl3_A Probable ATP-dependent 99.6 3.1E-15 1E-19 164.7 12.0 140 821-960 59-223 (236)
75 3ber_A Probable ATP-dependent 99.6 3E-15 1E-19 166.0 11.5 145 821-965 77-244 (249)
76 1qde_A EIF4A, translation init 99.6 9.1E-15 3.1E-19 159.4 14.2 146 821-966 48-214 (224)
77 2d7d_A Uvrabc system protein B 99.6 8.3E-15 2.8E-19 184.2 15.7 87 1066-1164 471-558 (661)
78 2oxc_A Probable ATP-dependent 99.6 3.3E-15 1.1E-19 163.7 10.1 139 821-959 58-218 (230)
79 3bor_A Human initiation factor 99.6 1.1E-14 3.7E-19 160.4 12.4 139 821-959 64-224 (237)
80 2yjt_D ATP-dependent RNA helic 99.3 3.8E-16 1.3E-20 162.7 0.0 80 1067-1162 57-137 (170)
81 1wrb_A DJVLGB; RNA helicase, D 99.5 1.2E-14 4E-19 161.8 11.9 140 821-960 57-230 (253)
82 3dkp_A Probable ATP-dependent 99.5 2.2E-14 7.4E-19 158.8 13.8 147 821-967 63-239 (245)
83 2gxq_A Heat resistant RNA depe 99.5 9.4E-15 3.2E-19 157.1 10.3 139 821-959 35-195 (207)
84 1t6n_A Probable ATP-dependent 99.5 1.2E-14 4.2E-19 158.0 8.7 139 821-959 48-210 (220)
85 2ipc_A Preprotein translocase 99.4 2.5E-12 8.7E-17 158.5 14.0 102 821-924 91-219 (997)
86 2vl7_A XPD; helicase, unknown 99.3 2.2E-12 7.7E-17 159.0 11.0 62 820-881 22-84 (540)
87 3llm_A ATP-dependent RNA helic 99.3 3.8E-12 1.3E-16 139.8 8.5 131 822-952 74-222 (235)
88 3b6e_A Interferon-induced heli 99.3 2.2E-12 7.6E-17 139.3 5.1 104 821-924 45-178 (216)
89 1rif_A DAR protein, DNA helica 99.2 1.1E-11 3.9E-16 140.0 10.4 124 822-950 126-263 (282)
90 2fz4_A DNA repair protein RAD2 99.2 1.8E-11 6E-16 134.4 11.0 110 821-941 105-221 (237)
91 1z5z_A Helicase of the SNF2/RA 99.1 1E-10 3.5E-15 130.6 7.6 75 1065-1155 138-215 (271)
92 3crv_A XPD/RAD3 related DNA he 98.7 7.8E-09 2.7E-13 127.8 7.9 106 820-926 18-190 (551)
93 3rc3_A ATP-dependent RNA helic 98.5 8.1E-08 2.8E-12 120.0 5.9 124 366-489 239-363 (677)
94 2i68_A Protein EMRE; transmemb 97.5 0.00011 3.7E-09 72.1 5.7 67 135-201 37-104 (137)
95 3b5d_A Multidrug transporter E 97.4 0.00011 3.6E-09 69.6 4.7 68 135-202 37-105 (110)
96 2i68_A Protein EMRE; transmemb 97.4 0.00023 7.7E-09 69.8 6.6 59 295-354 46-105 (137)
97 4a15_A XPD helicase, ATP-depen 97.3 0.00012 4.2E-09 91.1 5.2 52 819-870 17-73 (620)
98 1w36_D RECD, exodeoxyribonucle 97.1 0.00052 1.8E-08 85.3 7.6 118 822-948 162-299 (608)
99 3vkw_A Replicase large subunit 96.8 0.0016 5.6E-08 76.3 8.3 109 790-950 158-272 (446)
100 3b5d_A Multidrug transporter E 96.7 0.0084 2.9E-07 56.5 10.3 57 296-353 47-104 (110)
101 2gk6_A Regulator of nonsense t 96.5 0.0083 2.8E-07 74.8 12.1 50 825-874 196-250 (624)
102 2xzl_A ATP-dependent helicase 96.4 0.012 4.1E-07 75.2 12.1 52 822-873 373-429 (802)
103 4b3f_X DNA-binding protein smu 96.3 0.0067 2.3E-07 76.1 9.7 28 846-873 231-258 (646)
104 2orw_A Thymidine kinase; TMTK, 96.3 0.016 5.4E-07 60.2 10.4 23 792-814 2-24 (184)
105 2wjy_A Regulator of nonsense t 96.0 0.022 7.6E-07 72.6 11.7 53 822-874 369-426 (800)
106 1xx6_A Thymidine kinase; NESG, 95.6 0.012 4E-07 61.5 5.8 23 792-814 7-29 (191)
107 2j9r_A Thymidine kinase; TK1, 95.5 0.024 8.2E-07 59.7 7.9 42 791-859 26-67 (214)
108 3upu_A ATP-dependent DNA helic 95.4 0.029 9.8E-07 67.2 9.2 113 826-948 47-165 (459)
109 3e1s_A Exodeoxyribonuclease V, 95.3 0.023 7.9E-07 69.8 7.8 109 822-948 202-316 (574)
110 2b8t_A Thymidine kinase; deoxy 94.4 0.038 1.3E-06 59.0 5.7 23 792-814 11-33 (223)
111 2orv_A Thymidine kinase; TP4A 94.1 0.047 1.6E-06 58.0 5.6 25 792-816 18-42 (234)
112 2v6i_A RNA helicase; membrane, 93.7 0.036 1.2E-06 65.7 4.4 41 792-834 1-41 (431)
113 3e2i_A Thymidine kinase; Zn-bi 93.6 0.11 3.9E-06 54.5 7.3 23 792-814 27-49 (219)
114 1w4r_A Thymidine kinase; type 93.5 0.022 7.6E-07 59.0 1.7 27 788-814 15-41 (195)
115 1vec_A ATP-dependent RNA helic 93.2 0.059 2E-06 56.5 4.5 43 791-833 38-80 (206)
116 1qde_A EIF4A, translation init 93.0 0.06 2.1E-06 57.3 4.2 43 791-833 49-91 (224)
117 2whx_A Serine protease/ntpase/ 92.9 0.08 2.7E-06 65.7 5.7 47 786-834 179-225 (618)
118 2z83_A Helicase/nucleoside tri 92.7 0.059 2E-06 64.5 4.0 42 791-834 19-60 (459)
119 1yks_A Genome polyprotein [con 92.6 0.07 2.4E-06 63.4 4.4 41 791-833 6-46 (440)
120 3ber_A Probable ATP-dependent 92.5 0.066 2.3E-06 58.3 3.8 43 791-833 78-120 (249)
121 3fmo_B ATP-dependent RNA helic 92.4 0.082 2.8E-06 59.4 4.5 42 793-834 131-172 (300)
122 2jlq_A Serine protease subunit 92.4 0.092 3.1E-06 62.7 5.1 41 792-834 18-58 (451)
123 2oxc_A Probable ATP-dependent 92.2 0.086 2.9E-06 56.5 4.2 43 791-833 59-101 (230)
124 2kjq_A DNAA-related protein; s 92.2 0.24 8.2E-06 49.2 7.1 17 906-922 81-97 (149)
125 3ec2_A DNA replication protein 92.2 0.087 3E-06 54.0 4.0 71 823-920 37-112 (180)
126 3oiy_A Reverse gyrase helicase 92.1 0.066 2.2E-06 63.0 3.3 67 752-833 7-73 (414)
127 1t6n_A Probable ATP-dependent 92.1 0.095 3.3E-06 55.6 4.3 43 791-833 49-91 (220)
128 3bor_A Human initiation factor 92.0 0.056 1.9E-06 58.3 2.4 43 791-833 65-107 (237)
129 3iuy_A Probable ATP-dependent 91.9 0.1 3.4E-06 55.8 4.2 43 791-833 55-103 (228)
130 1q0u_A Bstdead; DEAD protein, 91.8 0.071 2.4E-06 56.6 2.9 42 792-833 40-81 (219)
131 3dkp_A Probable ATP-dependent 91.6 0.12 4E-06 56.0 4.3 43 791-833 64-107 (245)
132 2pl3_A Probable ATP-dependent 91.6 0.1 3.6E-06 56.0 3.9 43 791-833 60-106 (236)
133 2gxq_A Heat resistant RNA depe 91.2 0.14 4.7E-06 53.6 4.3 43 791-833 36-81 (207)
134 3bos_A Putative DNA replicatio 91.2 0.24 8.3E-06 52.9 6.4 19 823-841 51-69 (242)
135 3eiq_A Eukaryotic initiation f 90.9 0.13 4.4E-06 60.3 4.1 44 791-834 75-118 (414)
136 3ly5_A ATP-dependent RNA helic 90.8 0.1 3.5E-06 57.2 3.0 42 792-833 90-135 (262)
137 3fmp_B ATP-dependent RNA helic 90.8 0.15 5.3E-06 61.1 4.7 41 793-833 131-171 (479)
138 2wv9_A Flavivirin protease NS2 90.7 0.13 4.3E-06 64.4 3.9 40 792-833 240-279 (673)
139 3fht_A ATP-dependent RNA helic 90.6 0.16 5.3E-06 59.4 4.5 41 793-833 64-104 (412)
140 2p65_A Hypothetical protein PF 90.4 0.46 1.6E-05 48.2 7.3 14 908-921 115-128 (187)
141 3pey_A ATP-dependent RNA helic 90.1 0.18 6.3E-06 58.3 4.5 41 794-834 45-85 (395)
142 2j0s_A ATP-dependent RNA helic 90.1 0.17 5.7E-06 59.3 4.2 43 791-833 72-114 (410)
143 3fe2_A Probable ATP-dependent 89.7 0.19 6.6E-06 54.2 3.9 44 791-834 64-112 (242)
144 1d2n_A N-ethylmaleimide-sensit 89.7 1 3.5E-05 49.3 10.0 18 824-841 64-81 (272)
145 3fho_A ATP-dependent RNA helic 89.6 0.21 7.1E-06 60.6 4.5 41 793-833 158-198 (508)
146 1xti_A Probable ATP-dependent 89.5 0.22 7.5E-06 57.7 4.5 42 792-833 44-85 (391)
147 3o8b_A HCV NS3 protease/helica 89.4 0.3 1E-05 60.4 5.7 36 792-833 231-266 (666)
148 1wrb_A DJVLGB; RNA helicase, D 89.1 0.24 8.3E-06 53.7 4.2 43 791-833 58-109 (253)
149 2db3_A ATP-dependent RNA helic 88.9 0.21 7.3E-06 59.1 3.9 38 1019-1058 330-367 (434)
150 1gm5_A RECG; helicase, replica 88.9 0.14 4.8E-06 65.0 2.3 58 999-1058 596-656 (780)
151 1s2m_A Putative ATP-dependent 88.8 0.25 8.6E-06 57.5 4.4 42 792-833 57-98 (400)
152 3llm_A ATP-dependent RNA helic 87.9 0.3 1E-05 52.5 3.8 40 792-833 75-118 (235)
153 2va8_A SSO2462, SKI2-type heli 87.9 0.26 8.8E-06 62.5 3.9 45 1013-1059 312-356 (715)
154 1jbk_A CLPB protein; beta barr 87.5 1.2 4E-05 45.2 8.0 14 908-921 115-128 (195)
155 3i5x_A ATP-dependent RNA helic 87.2 0.33 1.1E-05 59.5 4.2 48 1010-1059 363-410 (563)
156 2z0m_A 337AA long hypothetical 87.2 0.28 9.7E-06 55.3 3.3 36 792-833 30-65 (337)
157 1fuu_A Yeast initiation factor 86.6 0.25 8.5E-06 57.2 2.5 42 792-833 57-98 (394)
158 1l8q_A Chromosomal replication 86.3 0.51 1.7E-05 53.3 4.7 44 824-868 37-84 (324)
159 2p6r_A Afuhel308 helicase; pro 85.9 0.22 7.7E-06 62.9 1.6 43 1014-1058 297-339 (702)
160 2i4i_A ATP-dependent RNA helic 85.7 0.41 1.4E-05 56.0 3.7 27 791-817 50-76 (417)
161 1hv8_A Putative ATP-dependent 85.6 0.54 1.8E-05 53.6 4.6 39 794-833 45-83 (367)
162 3l9o_A ATP-dependent RNA helic 85.3 0.33 1.1E-05 64.2 2.9 40 791-833 197-236 (1108)
163 2v1x_A ATP-dependent DNA helic 85.1 0.68 2.3E-05 57.0 5.4 38 790-833 56-93 (591)
164 4ddu_A Reverse gyrase; topoiso 85.0 0.53 1.8E-05 62.3 4.6 41 790-833 90-130 (1104)
165 3pfi_A Holliday junction ATP-d 84.8 1 3.5E-05 51.0 6.4 17 825-841 56-72 (338)
166 3sqw_A ATP-dependent RNA helic 84.5 0.55 1.9E-05 57.8 4.2 48 1010-1059 312-359 (579)
167 3tbk_A RIG-I helicase domain; 84.4 0.56 1.9E-05 57.0 4.2 104 821-924 16-143 (555)
168 2zj8_A DNA helicase, putative 84.3 0.4 1.4E-05 60.8 2.9 45 1013-1059 294-338 (720)
169 4a2p_A RIG-I, retinoic acid in 84.3 0.57 2E-05 57.0 4.2 79 1066-1162 428-508 (556)
170 2fz4_A DNA repair protein RAD2 84.3 0.59 2E-05 50.3 3.8 37 792-834 107-143 (237)
171 2qby_A CDC6 homolog 1, cell di 84.0 2.5 8.5E-05 48.4 9.3 16 908-923 128-143 (386)
172 2v1u_A Cell division control p 83.9 2.1 7.1E-05 49.1 8.6 15 908-922 130-144 (387)
173 2fwr_A DNA repair protein RAD2 83.8 0.65 2.2E-05 55.5 4.3 64 989-1059 348-412 (472)
174 2z4s_A Chromosomal replication 83.5 1.1 3.7E-05 53.1 5.9 72 824-922 130-208 (440)
175 2qby_B CDC6 homolog 3, cell di 83.1 2.2 7.5E-05 49.0 8.4 12 911-922 136-147 (384)
176 1hqc_A RUVB; extended AAA-ATPa 82.6 1.1 3.8E-05 50.3 5.4 18 824-841 38-55 (324)
177 3b6e_A Interferon-induced heli 82.2 0.33 1.1E-05 50.9 0.8 42 792-833 47-91 (216)
178 3lfu_A DNA helicase II; SF1 he 82.2 0.91 3.1E-05 56.6 4.9 46 825-870 23-76 (647)
179 2oca_A DAR protein, ATP-depend 82.1 0.65 2.2E-05 56.1 3.4 65 992-1058 350-415 (510)
180 2ykg_A Probable ATP-dependent 81.9 0.72 2.5E-05 58.1 3.8 111 990-1161 398-515 (696)
181 1fnn_A CDC6P, cell division co 80.9 3.5 0.00012 47.3 9.1 14 907-920 124-137 (389)
182 3eie_A Vacuolar protein sortin 80.8 5 0.00017 45.0 10.0 15 908-922 110-124 (322)
183 1w36_D RECD, exodeoxyribonucle 80.5 0.88 3E-05 56.2 3.8 45 790-835 161-207 (608)
184 2xau_A PRE-mRNA-splicing facto 80.2 0.94 3.2E-05 57.6 4.0 47 1012-1058 337-386 (773)
185 2xgj_A ATP-dependent RNA helic 80.0 0.91 3.1E-05 59.4 3.9 43 1015-1059 408-450 (1010)
186 4a2q_A RIG-I, retinoic acid in 79.5 1 3.6E-05 57.6 4.2 79 1066-1162 669-749 (797)
187 1oyw_A RECQ helicase, ATP-depe 79.4 0.7 2.4E-05 56.1 2.4 38 790-833 37-74 (523)
188 1rif_A DAR protein, DNA helica 79.2 0.76 2.6E-05 50.7 2.4 38 793-833 128-166 (282)
189 2cvh_A DNA repair and recombin 78.3 0.46 1.6E-05 50.0 0.3 15 908-922 105-119 (220)
190 4a4z_A Antiviral helicase SKI2 77.9 1.2 4.2E-05 58.2 4.1 45 1013-1059 399-443 (997)
191 1sxj_D Activator 1 41 kDa subu 76.7 4.5 0.00015 45.7 8.1 15 907-921 132-146 (353)
192 3crv_A XPD/RAD3 related DNA he 76.5 1.4 4.7E-05 53.8 3.9 41 792-838 21-61 (551)
193 1wp9_A ATP-dependent RNA helic 76.4 1.5 5.1E-05 51.9 4.0 103 821-924 21-141 (494)
194 4a2w_A RIG-I, retinoic acid in 76.4 1.5 5E-05 57.2 4.3 111 990-1161 631-748 (936)
195 2o0j_A Terminase, DNA packagin 76.4 10 0.00035 43.5 10.9 97 848-950 208-316 (385)
196 3umf_A Adenylate kinase; rossm 76.2 1.1 3.9E-05 47.3 2.6 20 791-810 27-46 (217)
197 1a5t_A Delta prime, HOLB; zinc 75.7 3.4 0.00012 46.7 6.6 17 906-922 106-122 (334)
198 4a15_A XPD helicase, ATP-depen 75.5 1.4 4.8E-05 54.5 3.5 47 1073-1122 478-529 (620)
199 1sxj_E Activator 1 40 kDa subu 75.4 4.9 0.00017 45.5 7.9 31 906-937 132-162 (354)
200 3u4q_A ATP-dependent helicase/ 74.5 3.3 0.00011 55.6 7.0 47 824-870 23-79 (1232)
201 1sxj_A Activator 1 95 kDa subu 74.4 5.5 0.00019 48.0 8.4 18 907-924 147-164 (516)
202 3kl4_A SRP54, signal recogniti 74.3 2.1 7.1E-05 50.2 4.4 18 792-809 96-113 (433)
203 4b3f_X DNA-binding protein smu 74.1 1.8 6.3E-05 53.8 4.2 38 794-834 206-243 (646)
204 3vfd_A Spastin; ATPase, microt 73.9 4.7 0.00016 46.6 7.3 13 909-921 208-220 (389)
205 4gl2_A Interferon-induced heli 73.7 0.89 3.1E-05 57.3 1.1 71 1064-1150 430-509 (699)
206 1uaa_A REP helicase, protein ( 73.3 2.2 7.7E-05 53.3 4.7 47 824-870 15-69 (673)
207 3n70_A Transport activator; si 73.1 2.1 7.3E-05 41.8 3.5 20 822-841 22-41 (145)
208 1gku_B Reverse gyrase, TOP-RG; 73.0 1.5 5.1E-05 57.9 3.0 41 790-833 68-108 (1054)
209 3exa_A TRNA delta(2)-isopenten 72.7 1.5 5.2E-05 48.8 2.5 20 791-810 1-20 (322)
210 3cpe_A Terminase, DNA packagin 71.9 6 0.00021 48.6 8.0 95 848-949 208-315 (592)
211 2dr3_A UPF0273 protein PH0284; 71.9 2.5 8.4E-05 45.1 4.0 52 821-873 20-75 (247)
212 3pvs_A Replication-associated 71.6 5.5 0.00019 47.0 7.2 15 908-922 106-120 (447)
213 3u61_B DNA polymerase accessor 71.3 4 0.00014 45.7 5.8 15 907-921 104-118 (324)
214 1pjr_A PCRA; DNA repair, DNA r 70.4 3 0.0001 52.6 4.9 46 825-870 25-78 (724)
215 1kht_A Adenylate kinase; phosp 70.3 1.6 5.5E-05 44.5 2.0 18 792-809 2-19 (192)
216 1kgd_A CASK, peripheral plasma 70.1 2 6.9E-05 43.7 2.6 19 791-809 3-21 (180)
217 3h1t_A Type I site-specific re 69.8 2.6 9E-05 51.8 4.1 40 794-833 199-244 (590)
218 3ney_A 55 kDa erythrocyte memb 69.6 3.8 0.00013 42.5 4.5 25 789-814 15-39 (197)
219 2vl7_A XPD; helicase, unknown 69.4 2.3 7.8E-05 51.7 3.3 48 1070-1122 411-465 (540)
220 3co5_A Putative two-component 68.8 2.5 8.5E-05 41.2 2.9 20 822-841 25-44 (143)
221 3lw7_A Adenylate kinase relate 68.1 1.9 6.5E-05 43.1 1.9 16 794-809 2-17 (179)
222 2zpa_A Uncharacterized protein 68.0 2.5 8.7E-05 52.0 3.3 73 826-921 194-268 (671)
223 1jr3_A DNA polymerase III subu 67.8 6.4 0.00022 44.8 6.6 16 826-841 40-55 (373)
224 1tev_A UMP-CMP kinase; ploop, 67.3 2.1 7E-05 43.8 2.0 19 792-810 2-20 (196)
225 3e1s_A Exodeoxyribonuclease V, 65.4 3.2 0.00011 50.7 3.5 41 791-834 202-242 (574)
226 1qhx_A CPT, protein (chloramph 65.3 2.5 8.5E-05 42.6 2.1 17 793-809 3-19 (178)
227 2d7d_A Uvrabc system protein B 65.1 4.4 0.00015 50.5 4.7 52 821-872 28-81 (661)
228 2w58_A DNAI, primosome compone 64.3 6.3 0.00022 40.5 5.1 17 825-841 55-71 (202)
229 2eyu_A Twitching motility prot 64.3 2.4 8.3E-05 46.1 1.9 18 792-809 24-41 (261)
230 2hjv_A ATP-dependent RNA helic 63.9 12 0.0004 37.1 6.9 69 847-915 34-110 (163)
231 3a8t_A Adenylate isopentenyltr 63.9 2.9 9.8E-05 47.1 2.4 20 792-811 39-58 (339)
232 2zts_A Putative uncharacterize 63.8 6.7 0.00023 41.7 5.4 51 822-873 28-83 (251)
233 2rb4_A ATP-dependent RNA helic 63.8 11 0.00036 38.0 6.6 67 848-914 34-108 (175)
234 1w5s_A Origin recognition comp 63.0 10 0.00035 43.7 7.2 15 908-922 138-152 (412)
235 1tf5_A Preprotein translocase 62.7 14 0.00049 46.4 8.6 92 991-1087 433-528 (844)
236 2plr_A DTMP kinase, probable t 62.3 3.1 0.0001 43.2 2.2 19 791-809 2-20 (213)
237 3sr0_A Adenylate kinase; phosp 62.0 2.8 9.5E-05 43.9 1.8 16 795-810 2-17 (206)
238 1ly1_A Polynucleotide kinase; 61.8 3 0.0001 42.0 2.0 16 794-809 3-18 (181)
239 2vli_A Antibiotic resistance p 61.4 3.3 0.00011 41.9 2.2 18 792-809 4-21 (183)
240 3eaq_A Heat resistant RNA depe 61.4 11 0.00038 39.3 6.4 69 846-914 29-105 (212)
241 2gk6_A Regulator of nonsense t 61.3 4.5 0.00015 50.1 3.8 40 793-834 195-234 (624)
242 4eaq_A DTMP kinase, thymidylat 61.3 18 0.0006 38.3 8.0 39 792-834 25-63 (229)
243 1ak2_A Adenylate kinase isoenz 61.1 3.2 0.00011 44.1 2.1 24 786-809 9-32 (233)
244 3tau_A Guanylate kinase, GMP k 61.1 3.7 0.00013 42.8 2.6 18 792-809 7-24 (208)
245 1knq_A Gluconate kinase; ALFA/ 60.9 3.7 0.00013 41.3 2.4 19 791-809 6-24 (175)
246 2qmh_A HPR kinase/phosphorylas 60.7 4.2 0.00014 42.1 2.8 22 791-812 32-53 (205)
247 1fuk_A Eukaryotic initiation f 60.6 13 0.00046 36.7 6.6 69 847-915 29-105 (165)
248 3cm0_A Adenylate kinase; ATP-b 60.4 3.4 0.00012 41.9 2.1 18 792-809 3-20 (186)
249 2qmh_A HPR kinase/phosphorylas 60.0 5.3 0.00018 41.4 3.4 21 823-843 33-53 (205)
250 2gno_A DNA polymerase III, gam 59.8 25 0.00087 38.9 9.3 17 906-922 80-96 (305)
251 2j41_A Guanylate kinase; GMP, 59.4 3.6 0.00012 42.5 2.1 18 792-809 5-22 (207)
252 2ze6_A Isopentenyl transferase 58.9 3.5 0.00012 44.6 2.0 15 795-809 3-17 (253)
253 4gp7_A Metallophosphoesterase; 58.5 3.6 0.00012 41.4 1.9 18 792-809 8-25 (171)
254 3iij_A Coilin-interacting nucl 58.3 3.6 0.00012 41.6 1.8 18 792-809 10-27 (180)
255 3jux_A Protein translocase sub 58.3 16 0.00056 45.2 7.7 92 991-1087 475-570 (822)
256 3vaa_A Shikimate kinase, SK; s 58.2 3.9 0.00013 42.3 2.1 18 792-809 24-41 (199)
257 2qgz_A Helicase loader, putati 57.4 8.2 0.00028 43.0 4.7 16 905-920 211-226 (308)
258 2qor_A Guanylate kinase; phosp 57.3 3.6 0.00012 42.7 1.7 18 792-809 11-28 (204)
259 3foz_A TRNA delta(2)-isopenten 57.0 4.9 0.00017 44.7 2.7 19 793-811 10-28 (316)
260 3trf_A Shikimate kinase, SK; a 56.9 3.9 0.00013 41.4 1.9 17 793-809 5-21 (185)
261 1t5i_A C_terminal domain of A 56.7 16 0.00054 36.6 6.4 69 847-915 30-106 (172)
262 3tr0_A Guanylate kinase, GMP k 56.7 5 0.00017 41.3 2.7 18 792-809 6-23 (205)
263 2rhm_A Putative kinase; P-loop 56.6 3.8 0.00013 41.7 1.7 17 793-809 5-21 (193)
264 2jgn_A DBX, DDX3, ATP-dependen 56.5 13 0.00046 37.7 5.8 68 847-914 45-120 (185)
265 1zp6_A Hypothetical protein AT 56.5 4.2 0.00014 41.4 2.0 18 792-809 8-25 (191)
266 3t61_A Gluconokinase; PSI-biol 56.1 3.8 0.00013 42.3 1.6 16 794-809 19-34 (202)
267 2wjy_A Regulator of nonsense t 55.9 6.1 0.00021 50.2 3.7 41 792-834 370-410 (800)
268 1kgd_A CASK, peripheral plasma 55.4 4.9 0.00017 40.8 2.3 20 822-841 3-22 (180)
269 3kb2_A SPBC2 prophage-derived 55.1 4.3 0.00015 40.4 1.8 15 795-809 3-17 (173)
270 2c95_A Adenylate kinase 1; tra 55.1 4.2 0.00014 41.5 1.7 17 793-809 9-25 (196)
271 1ukz_A Uridylate kinase; trans 54.9 5.4 0.00019 41.1 2.6 17 793-809 15-31 (203)
272 1y63_A LMAJ004144AAA protein; 54.3 5.1 0.00018 40.7 2.2 18 792-809 9-26 (184)
273 2yvu_A Probable adenylyl-sulfa 54.1 5.4 0.00018 40.5 2.4 19 791-809 11-29 (186)
274 4edh_A DTMP kinase, thymidylat 54.0 17 0.00059 37.9 6.3 20 791-810 4-23 (213)
275 2xzl_A ATP-dependent helicase 53.8 6.2 0.00021 50.2 3.3 43 792-836 374-416 (802)
276 2v54_A DTMP kinase, thymidylat 53.8 5.1 0.00017 41.2 2.1 17 793-809 4-20 (204)
277 1lvg_A Guanylate kinase, GMP k 53.7 3.8 0.00013 42.4 1.1 17 793-809 4-20 (198)
278 4tmk_A Protein (thymidylate ki 53.6 9.1 0.00031 40.1 4.0 20 791-810 1-20 (213)
279 2cdn_A Adenylate kinase; phosp 53.1 5.5 0.00019 41.0 2.3 18 792-809 19-36 (201)
280 1nks_A Adenylate kinase; therm 52.8 4.7 0.00016 40.9 1.6 15 795-809 3-17 (194)
281 3pxi_A Negative regulator of g 52.5 13 0.00045 47.0 6.0 16 826-841 523-538 (758)
282 1gvn_B Zeta; postsegregational 52.3 6.7 0.00023 43.2 2.9 18 792-809 32-49 (287)
283 1qvr_A CLPB protein; coiled co 52.2 17 0.00057 46.8 7.0 13 909-921 264-276 (854)
284 3jvv_A Twitching mobility prot 52.1 5 0.00017 45.8 1.8 18 792-809 122-139 (356)
285 3bh0_A DNAB-like replicative h 51.8 20 0.00067 40.0 6.7 36 820-855 64-103 (315)
286 3a8t_A Adenylate isopentenyltr 51.6 8.2 0.00028 43.4 3.4 18 824-841 40-57 (339)
287 2kjq_A DNAA-related protein; s 51.6 6.4 0.00022 38.7 2.3 18 792-809 35-52 (149)
288 3upu_A ATP-dependent DNA helic 51.5 7.8 0.00027 45.9 3.5 39 794-835 46-85 (459)
289 1p9r_A General secretion pathw 50.9 6.9 0.00024 45.6 2.8 18 792-809 166-183 (418)
290 4eun_A Thermoresistant glucoki 50.9 6 0.0002 40.8 2.1 18 792-809 28-45 (200)
291 3ec2_A DNA replication protein 50.7 4.9 0.00017 40.6 1.3 17 793-809 38-54 (180)
292 3crm_A TRNA delta(2)-isopenten 50.6 6.4 0.00022 44.1 2.4 17 794-810 6-22 (323)
293 3exa_A TRNA delta(2)-isopenten 50.3 9.7 0.00033 42.4 3.7 18 824-841 3-20 (322)
294 3cf0_A Transitional endoplasmi 50.1 16 0.00055 40.3 5.6 14 908-921 108-121 (301)
295 2fsf_A Preprotein translocase 50.0 24 0.00084 44.3 7.6 64 992-1059 443-507 (853)
296 1zd8_A GTP:AMP phosphotransfer 50.0 5.3 0.00018 42.1 1.5 16 794-809 8-23 (227)
297 3d3q_A TRNA delta(2)-isopenten 50.0 6.4 0.00022 44.4 2.3 17 794-810 8-24 (340)
298 1ex7_A Guanylate kinase; subst 49.9 6.8 0.00023 40.2 2.3 15 795-809 3-17 (186)
299 1qf9_A UMP/CMP kinase, protein 49.7 5.5 0.00019 40.4 1.5 16 794-809 7-22 (194)
300 2bwj_A Adenylate kinase 5; pho 49.6 5.5 0.00019 40.7 1.5 16 794-809 13-28 (199)
301 2w0m_A SSO2452; RECA, SSPF, un 49.5 11 0.00038 39.3 4.0 15 907-921 120-136 (235)
302 2oap_1 GSPE-2, type II secreti 49.4 6.8 0.00023 47.0 2.5 19 822-840 258-276 (511)
303 3c8u_A Fructokinase; YP_612366 49.4 6.8 0.00023 40.7 2.3 18 792-809 21-38 (208)
304 3a00_A Guanylate kinase, GMP k 49.4 6.2 0.00021 40.2 1.9 16 794-809 2-17 (186)
305 3lnc_A Guanylate kinase, GMP k 49.2 7.5 0.00026 41.1 2.6 18 792-809 26-43 (231)
306 2ewv_A Twitching motility prot 49.0 5.8 0.0002 45.6 1.7 18 792-809 135-152 (372)
307 3i32_A Heat resistant RNA depe 48.7 21 0.00072 39.5 6.2 69 846-914 26-102 (300)
308 3lv8_A DTMP kinase, thymidylat 48.5 12 0.0004 39.9 4.0 23 788-810 22-44 (236)
309 2wwf_A Thymidilate kinase, put 48.5 6.1 0.00021 40.9 1.7 18 792-809 9-26 (212)
310 2p6n_A ATP-dependent RNA helic 48.5 14 0.00047 37.9 4.4 67 848-914 54-128 (191)
311 1kag_A SKI, shikimate kinase I 48.5 5.9 0.0002 39.5 1.5 16 794-809 5-20 (173)
312 1aky_A Adenylate kinase; ATP:A 48.4 6.7 0.00023 41.1 2.0 16 794-809 5-20 (220)
313 1e6c_A Shikimate kinase; phosp 48.1 5.9 0.0002 39.5 1.5 15 795-809 4-18 (173)
314 3n70_A Transport activator; si 47.9 6.3 0.00021 38.3 1.6 16 794-809 25-40 (145)
315 2z43_A DNA repair and recombin 47.9 11 0.00037 42.3 3.8 36 820-855 103-148 (324)
316 2qt1_A Nicotinamide riboside k 47.4 7.1 0.00024 40.4 2.0 18 792-809 20-37 (207)
317 2bbw_A Adenylate kinase 4, AK4 47.1 7.2 0.00025 41.7 2.0 17 793-809 27-43 (246)
318 1zuh_A Shikimate kinase; alpha 46.9 7.2 0.00025 38.8 1.9 16 794-809 8-23 (168)
319 3uie_A Adenylyl-sulfate kinase 46.8 7.5 0.00026 40.0 2.1 18 792-809 24-41 (200)
320 2ehv_A Hypothetical protein PH 46.7 13 0.00044 39.4 4.0 17 792-808 29-45 (251)
321 1znw_A Guanylate kinase, GMP k 46.6 6.7 0.00023 40.7 1.7 19 791-809 18-36 (207)
322 2gza_A Type IV secretion syste 46.4 8.3 0.00028 44.0 2.5 21 821-841 172-192 (361)
323 2oap_1 GSPE-2, type II secreti 46.4 6.5 0.00022 47.2 1.7 22 792-814 259-280 (511)
324 1z6g_A Guanylate kinase; struc 46.2 6 0.00021 41.6 1.2 18 792-809 22-39 (218)
325 2pez_A Bifunctional 3'-phospho 46.2 8 0.00027 38.9 2.1 18 792-809 4-21 (179)
326 1c9k_A COBU, adenosylcobinamid 46.2 8.2 0.00028 39.3 2.1 41 828-868 3-43 (180)
327 3tlx_A Adenylate kinase 2; str 46.2 7.8 0.00027 41.5 2.1 17 793-809 29-45 (243)
328 3eph_A TRNA isopentenyltransfe 46.0 7.6 0.00026 44.8 2.1 18 794-811 3-20 (409)
329 3foz_A TRNA delta(2)-isopenten 45.8 12 0.00043 41.4 3.7 16 826-841 12-27 (316)
330 2jaq_A Deoxyguanosine kinase; 45.8 7.6 0.00026 39.8 1.9 15 795-809 2-16 (205)
331 1e9r_A Conjugal transfer prote 45.6 12 0.00042 43.7 4.0 39 824-862 53-95 (437)
332 2bdt_A BH3686; alpha-beta prot 45.6 7.7 0.00026 39.4 1.9 16 794-809 3-18 (189)
333 2bjv_A PSP operon transcriptio 45.3 13 0.00045 40.0 3.8 20 822-841 27-46 (265)
334 2gza_A Type IV secretion syste 45.3 5.6 0.00019 45.5 0.8 18 792-809 174-191 (361)
335 2pbr_A DTMP kinase, thymidylat 45.2 7.8 0.00027 39.3 1.9 15 795-809 2-16 (195)
336 1nn5_A Similar to deoxythymidy 45.1 7.4 0.00025 40.3 1.7 18 792-809 8-25 (215)
337 3vaa_A Shikimate kinase, SK; s 45.0 8.7 0.0003 39.5 2.2 20 822-841 23-42 (199)
338 1s96_A Guanylate kinase, GMP k 45.0 7.6 0.00026 40.9 1.8 19 791-809 14-32 (219)
339 3fb4_A Adenylate kinase; psych 44.9 7.2 0.00025 40.6 1.6 14 796-809 3-16 (216)
340 2eyu_A Twitching motility prot 44.7 7.8 0.00027 42.0 1.8 21 821-841 22-42 (261)
341 1m7g_A Adenylylsulfate kinase; 44.6 8.6 0.00029 40.0 2.1 18 792-809 24-41 (211)
342 1zak_A Adenylate kinase; ATP:A 44.6 6.5 0.00022 41.2 1.2 16 794-809 6-21 (222)
343 1zp6_A Hypothetical protein AT 44.4 7.4 0.00025 39.5 1.5 21 821-841 6-26 (191)
344 3a4m_A L-seryl-tRNA(SEC) kinas 44.3 8.7 0.0003 41.6 2.1 16 794-809 5-20 (260)
345 3v9p_A DTMP kinase, thymidylat 44.2 16 0.00054 38.7 4.1 18 792-809 24-41 (227)
346 1uf9_A TT1252 protein; P-loop, 44.2 8.3 0.00028 39.5 1.9 17 793-809 8-24 (203)
347 3trf_A Shikimate kinase, SK; a 44.1 9 0.00031 38.7 2.1 18 824-841 5-22 (185)
348 3h4m_A Proteasome-activating n 43.8 9.4 0.00032 41.6 2.4 21 821-841 48-68 (285)
349 2pt5_A Shikimate kinase, SK; a 43.8 8.8 0.0003 38.0 1.9 15 795-809 2-16 (168)
350 3co5_A Putative two-component 43.7 6.3 0.00022 38.2 0.8 15 795-809 29-43 (143)
351 1qhx_A CPT, protein (chloramph 43.7 9.7 0.00033 38.1 2.3 18 824-841 3-20 (178)
352 3dl0_A Adenylate kinase; phosp 43.5 7.7 0.00026 40.4 1.6 14 796-809 3-16 (216)
353 4hlc_A DTMP kinase, thymidylat 43.4 33 0.0011 35.4 6.4 40 794-837 3-42 (205)
354 2qz4_A Paraplegin; AAA+, SPG7, 43.1 5.3 0.00018 42.9 0.2 13 909-921 99-111 (262)
355 3tau_A Guanylate kinase, GMP k 43.1 9.6 0.00033 39.6 2.2 19 823-841 7-25 (208)
356 2qz4_A Paraplegin; AAA+, SPG7, 43.0 9.9 0.00034 40.7 2.3 18 824-841 39-56 (262)
357 1jbk_A CLPB protein; beta barr 42.8 9.6 0.00033 38.1 2.1 17 793-809 43-59 (195)
358 3hjh_A Transcription-repair-co 42.7 21 0.00071 42.4 5.2 47 826-872 16-63 (483)
359 3ney_A 55 kDa erythrocyte memb 42.6 10 0.00035 39.2 2.3 20 822-841 17-36 (197)
360 1cke_A CK, MSSA, protein (cyti 42.4 9.1 0.00031 40.1 1.9 16 794-809 6-21 (227)
361 4a1f_A DNAB helicase, replicat 42.3 33 0.0011 38.6 6.5 14 908-921 156-169 (338)
362 1vht_A Dephospho-COA kinase; s 42.3 10 0.00034 39.6 2.2 17 793-809 4-20 (218)
363 1n0w_A DNA repair protein RAD5 42.0 17 0.00059 38.2 4.1 17 907-923 118-134 (243)
364 2v9p_A Replication protein E1; 41.9 13 0.00045 41.2 3.2 20 790-809 123-142 (305)
365 1via_A Shikimate kinase; struc 41.8 8.5 0.00029 38.5 1.5 15 795-809 6-20 (175)
366 2xb4_A Adenylate kinase; ATP-b 41.7 9.5 0.00033 40.1 1.9 15 795-809 2-16 (223)
367 2z0h_A DTMP kinase, thymidylat 41.7 9.4 0.00032 38.9 1.8 15 795-809 2-16 (197)
368 2j41_A Guanylate kinase; GMP, 41.5 11 0.00037 38.8 2.3 21 821-841 3-23 (207)
369 2iyv_A Shikimate kinase, SK; t 41.3 8.1 0.00028 39.0 1.2 15 795-809 4-18 (184)
370 3be4_A Adenylate kinase; malar 41.2 8.7 0.0003 40.2 1.5 15 795-809 7-21 (217)
371 1u94_A RECA protein, recombina 41.2 17 0.00057 41.4 4.0 36 820-855 59-98 (356)
372 1lvg_A Guanylate kinase, GMP k 41.1 11 0.00037 38.9 2.2 19 823-841 3-21 (198)
373 3syl_A Protein CBBX; photosynt 41.0 9.6 0.00033 42.1 1.9 18 824-841 67-84 (309)
374 2ipc_A Preprotein translocase 40.9 10 0.00034 48.0 2.1 39 791-834 92-130 (997)
375 2zr9_A Protein RECA, recombina 40.8 16 0.00055 41.4 3.7 36 820-855 57-96 (349)
376 3dmq_A RNA polymerase-associat 40.7 15 0.0005 48.0 3.8 70 990-1059 503-574 (968)
377 3bos_A Putative DNA replicatio 40.7 10 0.00035 39.8 2.0 21 793-814 52-72 (242)
378 1e9r_A Conjugal transfer prote 40.6 13 0.00043 43.6 2.9 41 793-836 53-93 (437)
379 2p5t_B PEZT; postsegregational 40.4 10 0.00034 40.8 1.9 18 792-809 31-48 (253)
380 1e4v_A Adenylate kinase; trans 40.4 8.3 0.00028 40.2 1.2 14 796-809 3-16 (214)
381 1ojl_A Transcriptional regulat 40.3 16 0.00053 40.6 3.5 20 822-841 23-42 (304)
382 2ehv_A Hypothetical protein PH 40.2 9.7 0.00033 40.4 1.7 30 826-855 32-66 (251)
383 2qor_A Guanylate kinase; phosp 39.8 13 0.00043 38.4 2.5 21 821-841 9-29 (204)
384 3b9q_A Chloroplast SRP recepto 39.7 17 0.00058 40.3 3.6 18 792-809 99-116 (302)
385 2pt7_A CAG-ALFA; ATPase, prote 39.7 9.9 0.00034 42.8 1.7 21 821-841 168-188 (330)
386 3asz_A Uridine kinase; cytidin 39.7 9.2 0.00032 39.6 1.4 18 792-809 5-22 (211)
387 1rj9_A FTSY, signal recognitio 39.6 17 0.00058 40.3 3.6 18 792-809 101-118 (304)
388 2px0_A Flagellar biosynthesis 39.6 14 0.00049 40.7 3.0 18 792-809 104-121 (296)
389 2pt7_A CAG-ALFA; ATPase, prote 39.6 7.7 0.00026 43.7 0.8 18 792-809 170-187 (330)
390 3hr8_A Protein RECA; alpha and 39.6 11 0.00038 42.8 2.2 37 820-856 57-97 (356)
391 2p65_A Hypothetical protein PF 39.5 8.9 0.00031 38.3 1.2 17 793-809 43-59 (187)
392 3iij_A Coilin-interacting nucl 39.5 13 0.00045 37.3 2.5 20 822-841 9-28 (180)
393 2w58_A DNAI, primosome compone 39.4 11 0.00036 38.8 1.8 16 794-809 55-70 (202)
394 4ag6_A VIRB4 ATPase, type IV s 39.2 22 0.00075 40.9 4.7 37 823-859 34-74 (392)
395 1ltq_A Polynucleotide kinase; 39.0 11 0.00038 41.5 2.0 16 794-809 3-18 (301)
396 1nkt_A Preprotein translocase 38.7 35 0.0012 43.2 6.5 64 992-1059 462-526 (922)
397 1xwi_A SKD1 protein; VPS4B, AA 38.6 20 0.00067 40.1 4.0 14 908-921 105-118 (322)
398 3ld9_A DTMP kinase, thymidylat 38.6 46 0.0016 34.9 6.6 18 792-809 20-37 (223)
399 3tif_A Uncharacterized ABC tra 38.6 11 0.00036 40.3 1.7 19 791-809 29-47 (235)
400 1f2t_A RAD50 ABC-ATPase; DNA d 38.5 15 0.00052 35.9 2.7 21 793-814 23-43 (149)
401 3hws_A ATP-dependent CLP prote 38.4 13 0.00043 42.4 2.4 19 823-841 50-68 (363)
402 3bgw_A DNAB-like replicative h 38.4 30 0.001 40.6 5.6 36 820-855 193-232 (444)
403 2q6t_A DNAB replication FORK h 38.4 28 0.00095 40.8 5.5 36 820-855 196-236 (444)
404 3hjn_A DTMP kinase, thymidylat 38.2 25 0.00086 36.1 4.4 36 796-836 3-40 (197)
405 2px0_A Flagellar biosynthesis 38.1 22 0.00076 39.2 4.3 45 823-867 104-155 (296)
406 3tr0_A Guanylate kinase, GMP k 38.1 13 0.00044 38.1 2.2 19 823-841 6-24 (205)
407 2ze6_A Isopentenyl transferase 37.9 12 0.0004 40.4 1.9 16 826-841 3-18 (253)
408 3b9p_A CG5977-PA, isoform A; A 37.9 12 0.00041 41.0 2.1 18 824-841 54-71 (297)
409 4a74_A DNA repair and recombin 37.8 10 0.00035 39.6 1.4 18 792-809 24-41 (231)
410 1htw_A HI0065; nucleotide-bind 37.7 12 0.00041 37.1 1.8 18 792-809 32-49 (158)
411 1kag_A SKI, shikimate kinase I 37.5 14 0.00047 36.7 2.3 18 824-841 4-21 (173)
412 1gtv_A TMK, thymidylate kinase 37.5 5.3 0.00018 41.4 -0.9 15 795-809 2-16 (214)
413 1ofh_A ATP-dependent HSL prote 37.4 14 0.00046 40.7 2.4 18 824-841 50-67 (310)
414 2vp4_A Deoxynucleoside kinase; 37.3 15 0.00051 38.7 2.6 19 791-809 18-36 (230)
415 2i1q_A DNA repair and recombin 37.3 14 0.00048 41.2 2.5 14 907-920 203-216 (322)
416 3te6_A Regulatory protein SIR3 37.3 9.4 0.00032 42.7 1.0 19 823-841 44-62 (318)
417 2zts_A Putative uncharacterize 37.2 14 0.00048 39.1 2.4 40 792-833 29-68 (251)
418 1z63_A Helicase of the SNF2/RA 37.1 17 0.00058 43.2 3.4 120 823-949 55-187 (500)
419 2cvh_A DNA repair and recombin 37.1 14 0.00047 38.3 2.3 18 792-809 19-36 (220)
420 1kht_A Adenylate kinase; phosp 36.9 13 0.00046 37.4 2.1 19 823-841 2-20 (192)
421 4gp7_A Metallophosphoesterase; 36.9 12 0.0004 37.5 1.6 21 821-841 6-26 (171)
422 1y63_A LMAJ004144AAA protein; 36.8 14 0.00048 37.4 2.2 20 822-841 8-27 (184)
423 3b85_A Phosphate starvation-in 36.7 17 0.00058 37.8 2.8 15 906-920 120-134 (208)
424 1xp8_A RECA protein, recombina 36.7 20 0.00069 40.8 3.7 36 820-855 70-109 (366)
425 3lw7_A Adenylate kinase relate 36.7 13 0.00044 36.7 1.9 16 826-841 3-18 (179)
426 1v5w_A DMC1, meiotic recombina 36.6 20 0.00069 40.4 3.7 15 907-921 218-232 (343)
427 3e70_C DPA, signal recognition 36.6 20 0.00069 40.2 3.6 18 792-809 128-145 (328)
428 2dr3_A UPF0273 protein PH0284; 36.6 13 0.00045 39.3 2.0 40 792-834 22-61 (247)
429 1z6g_A Guanylate kinase; struc 36.5 15 0.00051 38.5 2.4 21 821-841 20-40 (218)
430 1jjv_A Dephospho-COA kinase; P 36.4 13 0.00045 38.2 2.0 15 795-809 4-18 (206)
431 3dm5_A SRP54, signal recogniti 36.4 26 0.0009 40.9 4.6 18 792-809 99-116 (443)
432 1rz3_A Hypothetical protein rb 35.9 13 0.00044 38.3 1.8 18 792-809 21-38 (201)
433 1lv7_A FTSH; alpha/beta domain 35.8 15 0.0005 39.4 2.2 15 908-922 104-118 (257)
434 4b4t_J 26S protease regulatory 35.7 16 0.00054 42.2 2.6 22 820-841 178-199 (405)
435 3a00_A Guanylate kinase, GMP k 35.6 16 0.00053 37.1 2.3 18 824-841 1-18 (186)
436 1nij_A Hypothetical protein YJ 35.6 23 0.00077 39.5 3.8 20 794-814 5-24 (318)
437 2if2_A Dephospho-COA kinase; a 35.6 12 0.00041 38.4 1.5 15 795-809 3-17 (204)
438 3uk6_A RUVB-like 2; hexameric 35.5 13 0.00044 42.2 1.9 20 822-841 68-87 (368)
439 2r2a_A Uncharacterized protein 35.4 17 0.00057 37.6 2.5 20 795-814 7-26 (199)
440 1odf_A YGR205W, hypothetical 3 35.3 15 0.0005 40.6 2.2 19 792-810 30-48 (290)
441 1p9r_A General secretion pathw 35.3 21 0.00072 41.5 3.6 19 823-841 166-184 (418)
442 2cbz_A Multidrug resistance-as 35.2 13 0.00044 39.6 1.7 19 791-809 29-47 (237)
443 1ex7_A Guanylate kinase; subst 35.1 15 0.00053 37.4 2.2 16 825-840 2-17 (186)
444 2og2_A Putative signal recogni 35.0 22 0.00075 40.4 3.6 18 792-809 156-173 (359)
445 2r6a_A DNAB helicase, replicat 35.0 34 0.0012 40.2 5.5 16 907-922 312-327 (454)
446 4b4t_M 26S protease regulatory 34.9 17 0.00057 42.5 2.7 22 820-841 211-232 (434)
447 1vma_A Cell division protein F 34.9 31 0.0011 38.2 4.8 18 792-809 103-120 (306)
448 2ewv_A Twitching motility prot 34.9 13 0.00045 42.6 1.8 21 821-841 133-153 (372)
449 1znw_A Guanylate kinase, GMP k 34.7 16 0.00054 37.8 2.2 23 819-841 15-37 (207)
450 1cr0_A DNA primase/helicase; R 34.7 26 0.00091 38.3 4.2 18 792-809 34-51 (296)
451 2w00_A HSDR, R.ECOR124I; ATP-b 34.7 18 0.0006 47.3 3.1 40 793-833 300-339 (1038)
452 3hgt_A HDA1 complex subunit 3; 34.7 1E+02 0.0035 34.2 8.8 46 1091-1149 169-220 (328)
453 2c9o_A RUVB-like 1; hexameric 34.6 16 0.00053 43.2 2.4 22 820-841 59-80 (456)
454 1ye8_A Protein THEP1, hypothet 34.6 13 0.00045 37.6 1.5 14 796-809 3-16 (178)
455 2chg_A Replication factor C sm 34.6 17 0.00057 37.3 2.4 17 825-841 39-55 (226)
456 3kta_A Chromosome segregation 34.5 16 0.00055 36.7 2.2 21 793-814 26-46 (182)
457 1a7j_A Phosphoribulokinase; tr 34.4 16 0.00056 40.2 2.4 18 792-809 4-21 (290)
458 1d2n_A N-ethylmaleimide-sensit 34.4 15 0.00051 39.8 2.1 17 793-809 64-80 (272)
459 3ake_A Cytidylate kinase; CMP 34.2 15 0.00053 37.6 2.0 15 795-809 4-18 (208)
460 3qf4_B Uncharacterized ABC tra 34.2 9.2 0.00031 47.0 0.3 16 793-808 381-396 (598)
461 3crm_A TRNA delta(2)-isopenten 34.1 22 0.00076 39.7 3.4 17 825-841 6-22 (323)
462 2w0m_A SSO2452; RECA, SSPF, un 34.0 14 0.00047 38.6 1.7 18 792-809 22-39 (235)
463 4eun_A Thermoresistant glucoki 34.0 16 0.00056 37.4 2.2 19 823-841 28-46 (200)
464 2r62_A Cell division protease 33.9 13 0.00043 40.2 1.3 18 824-841 44-61 (268)
465 3gfo_A Cobalt import ATP-bindi 33.8 14 0.00048 40.4 1.7 18 792-809 33-50 (275)
466 3nwj_A ATSK2; P loop, shikimat 33.7 13 0.00044 40.0 1.4 18 792-809 47-64 (250)
467 3b9p_A CG5977-PA, isoform A; A 33.7 15 0.00051 40.3 2.0 21 793-814 54-74 (297)
468 4ag6_A VIRB4 ATPase, type IV s 33.7 28 0.00097 39.9 4.4 43 793-838 35-77 (392)
469 3r20_A Cytidylate kinase; stru 33.6 15 0.00053 38.9 1.9 17 793-809 9-25 (233)
470 3cf0_A Transitional endoplasmi 33.5 15 0.00051 40.6 1.9 17 793-809 49-65 (301)
471 1tue_A Replication protein E1; 33.4 13 0.00046 38.6 1.3 18 793-810 58-75 (212)
472 2pze_A Cystic fibrosis transme 33.3 15 0.0005 38.9 1.7 19 791-809 32-50 (229)
473 1p5z_B DCK, deoxycytidine kina 33.2 16 0.00055 39.3 2.1 17 793-809 24-40 (263)
474 3nbx_X ATPase RAVA; AAA+ ATPas 33.2 13 0.00044 44.4 1.3 21 821-841 38-58 (500)
475 3b85_A Phosphate starvation-in 33.0 17 0.00059 37.8 2.2 18 792-809 21-38 (208)
476 4e22_A Cytidylate kinase; P-lo 32.9 17 0.00057 39.0 2.1 18 792-809 26-43 (252)
477 3aez_A Pantothenate kinase; tr 32.8 15 0.00053 40.8 1.9 19 791-809 88-106 (312)
478 1knq_A Gluconate kinase; ALFA/ 32.8 15 0.00051 36.6 1.6 19 823-841 7-25 (175)
479 1lv7_A FTSH; alpha/beta domain 32.7 15 0.00051 39.4 1.7 15 795-809 47-61 (257)
480 1mv5_A LMRA, multidrug resista 32.6 16 0.00054 39.1 1.8 19 791-809 26-44 (243)
481 1n0w_A DNA repair protein RAD5 32.6 18 0.00062 38.0 2.3 19 792-810 23-41 (243)
482 2pcj_A ABC transporter, lipopr 32.5 14 0.00048 38.9 1.4 18 792-809 29-46 (224)
483 4b4t_K 26S protease regulatory 32.5 18 0.00062 42.1 2.4 22 820-841 202-223 (428)
484 2yjt_D ATP-dependent RNA helic 38.7 9.4 0.00032 38.2 0.0 67 848-914 30-104 (170)
485 1uj2_A Uridine-cytidine kinase 32.4 17 0.00059 38.9 2.1 17 793-809 22-38 (252)
486 2v9p_A Replication protein E1; 32.3 15 0.00051 40.8 1.6 25 827-852 129-155 (305)
487 1um8_A ATP-dependent CLP prote 32.2 18 0.00062 41.3 2.4 18 824-841 72-89 (376)
488 3d3q_A TRNA delta(2)-isopenten 32.2 25 0.00086 39.5 3.4 16 826-841 9-24 (340)
489 2f6r_A COA synthase, bifunctio 32.1 16 0.00055 40.0 1.8 17 793-809 75-91 (281)
490 3t15_A Ribulose bisphosphate c 32.1 15 0.0005 40.5 1.5 17 794-810 37-53 (293)
491 3h4m_A Proteasome-activating n 32.0 16 0.00056 39.6 1.9 20 794-814 52-71 (285)
492 4g1u_C Hemin import ATP-bindin 31.9 16 0.00055 39.7 1.8 18 792-809 36-53 (266)
493 3jvv_A Twitching mobility prot 31.8 15 0.00052 41.7 1.6 20 822-841 121-140 (356)
494 3zvl_A Bifunctional polynucleo 31.8 24 0.00081 41.1 3.3 18 792-809 257-274 (416)
495 1g6h_A High-affinity branched- 31.8 16 0.00054 39.5 1.7 19 791-809 31-49 (257)
496 2h92_A Cytidylate kinase; ross 31.7 15 0.00052 38.1 1.5 16 794-809 4-19 (219)
497 2rhm_A Putative kinase; P-loop 31.6 16 0.00056 36.8 1.7 19 823-841 4-22 (193)
498 4b4t_L 26S protease subunit RP 31.5 19 0.00066 42.0 2.4 22 820-841 211-232 (437)
499 2ff7_A Alpha-hemolysin translo 31.5 16 0.00055 39.2 1.7 18 792-809 34-51 (247)
500 1rj9_A FTSY, signal recognitio 31.5 30 0.001 38.3 3.9 32 824-855 102-137 (304)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.2e-59 Score=586.49 Aligned_cols=496 Identities=64% Similarity=1.084 Sum_probs=409.2
Q ss_pred CCCceeeeccccCCCCCCCCcccccccccCCCChhHHHHHHHHhhhhHHHHHHHHhcCCCCCCCCCccccccccccccch
Q psy12699 511 NVGQELTVPVHVKPNTDPTDANVGQELTGGSIDKSETVKILNKFYQRQEIKIAAMDHGLDNTPSSHTKEAVSLVNYDTTI 590 (1269)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (1269)
.+.++||+|+++++++.+.|.|+|.+++ +|++|.|..++||+|++|.+++.++.++|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 72 (677)
T 3rc3_A 13 IPNTSLFVPLTVKPQGPSADGDVGAELT-RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDA------------------- 72 (677)
T ss_dssp CCCGGGCCCCCCCCC---------------CCCHHHHHHHHHHHHHCHHHHHHHHHTTCCH-------------------
T ss_pred CCCcceEEeeeccCCCCcccccccceee-eecchHHHHHHHHHHhhcHHHHHHHHhcCcch-------------------
Confidence 3455799999999988888999999999 89999999999999999999999877777633
Q ss_pred hHHHHHHHHHhHhhHhhhhhhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHcCccccCCCChhhhhhhchhhHHHHHHH
Q psy12699 591 AKISTALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIYLGNM 670 (1269)
Q Consensus 591 ~~~~~~~~y~~~S~~~~~~NK~~l~~~~f~~~~~l~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~i 670 (1269)
..+|+.+
T Consensus 73 -----------------------------------~~~~~~~-------------------------------------- 79 (677)
T 3rc3_A 73 -----------------------------------RLFHQAF-------------------------------------- 79 (677)
T ss_dssp -----------------------------------HHHHHHH--------------------------------------
T ss_pred -----------------------------------HHHHHHH--------------------------------------
Confidence 1112111
Q ss_pred hhhhhcccccCchHHHHhhhhhHHHHHHHhhhhcccccchhhHHHHHHhhhheeeeccCCCcceehhhhHhhcCcCcccc
Q psy12699 671 VFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYLQHQAYISFRRYCLETQSLPVDLHVVLSDIIQGAGHVDD 750 (1269)
Q Consensus 671 ~~~~~sl~~~sV~f~~~~k~~t~~~~~~~~~~~~~~~~s~~~~~s~~~~~g~~~~~~~d~~f~~~~~l~~i~~~~~~v~~ 750 (1269)
+-+.-+++..+.+..+++..++++++.++++++
T Consensus 80 -----------------------------------------------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (677)
T 3rc3_A 80 -----------------------------------------------ISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD 112 (677)
T ss_dssp -----------------------------------------------HHHHHHHHHCSSCCHHHHHHHHHHHTTSSCGGG
T ss_pred -----------------------------------------------HHHHHHhhccCCCCcchhhHHHHHhhccCcccc
Confidence 011223455666778889999999999999999
Q ss_pred hHhHHHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEe
Q psy12699 751 MFPYYLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHA 830 (1269)
Q Consensus 751 ~~~~~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~ 830 (1269)
++|+|++|+++.||++++++++++|.|++.|.+|||.++.++|++++++||||||||+.+++.+
T Consensus 113 ~~p~f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l---------------- 176 (677)
T 3rc3_A 113 LFPFFLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY---------------- 176 (677)
T ss_dssp GHHHHHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHH----------------
T ss_pred ccchHHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999777666
Q ss_pred ccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEccccccCCCCee
Q psy12699 831 GPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTVEMTSVNIPYE 910 (1269)
Q Consensus 831 apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~~l~~~~ 910 (1269)
...++++|++|||+||.|+++++++.|.++++++|++...........+++++|+|++.....++
T Consensus 177 ---------------~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v~ 241 (677)
T 3rc3_A 177 ---------------FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYE 241 (677)
T ss_dssp ---------------HHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCEE
T ss_pred ---------------HhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeEecHhHhhhcccCC
Confidence 34467799999999999999999999999999999987754433446899999999999999999
Q ss_pred EEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEecccCCccccccccccccCCcCC
Q psy12699 911 VAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQP 990 (1269)
Q Consensus 911 ~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~ 990 (1269)
++||||+|+++|.+||..++.++.+++++.+.+++.++..+.++.+....+..+.+..+.+..++.+....+..+..+.+
T Consensus 242 lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~ 321 (677)
T 3rc3_A 242 VAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRP 321 (677)
T ss_dssp EEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCT
T ss_pred EEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999877777777777778888888888888889888888888877666666666777
Q ss_pred CCEEEEecHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEE
Q psy12699 991 GDCIVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVI 1070 (1269)
Q Consensus 991 g~~iv~~s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~ 1070 (1269)
|++++|+++++++.+++.|++.+.. +.++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~---------------------------------------------------v~~l 350 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLE---------------------------------------------------SAVI 350 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------------------CEEE
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCC---------------------------------------------------eeee
Confidence 8888777999999999998775432 7889
Q ss_pred cCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC
Q psy12699 1071 YGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1071 Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
||+|++++|+++++.|++++|+++||||||++++|||+++++||++|..|++||+.|..+.+|.+.++|+||+|||||.|
T Consensus 351 HG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 351 YGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp CTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred eccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999333999999999999999999999999999999888887876788999999999999999966
Q ss_pred CccccccCCCCcccccccchhhhhhhhhHHHhhccCCCCcccccccceEeeCCCChHHHHHhhcCCCCcccccccccCcc
Q psy12699 1151 THFEKLAGSHPALNEKGEREIDLISVSAALQIAGRAGRFNTHFEKGFVTTFKPDDLPILKNLLAQSPEPITKAGLHPTAD 1230 (1269)
Q Consensus 1151 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~qia~~~g~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1230 (1269)
++| ..|.|..+..++.+.+++++...++++.++++.|..+
T Consensus 431 ~~g----------------------------------------~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~ 470 (677)
T 3rc3_A 431 SRF----------------------------------------KEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAE 470 (677)
T ss_dssp SSC----------------------------------------SSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHH
T ss_pred CCC----------------------------------------CCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHH
Confidence 542 2467777877888899999999999999999999999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHhhcCCCCCCeeeccCCC
Q psy12699 1231 QIELYAYHLPNSTLSNLMDIFVSLSTVDDSLYFMCNIEK 1269 (1269)
Q Consensus 1231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 (1269)
+++.+.+++|+..+.++++.+.++++++ ..|++||+++
T Consensus 471 ~l~~~~~~l~~~~l~ell~~l~~~~~vd-~~f~~~~l~~ 508 (677)
T 3rc3_A 471 QIEMFAYHLPDATLSNLIDIFVDFSQVD-GQYFVCNMDD 508 (677)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHHCBCC-TTEEECCCHH
T ss_pred HHHHHhccCCcchHHHHHHHHHHhhccc-chhhccchHH
Confidence 9999999999999999999999999998 7999999863
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-33 Score=340.06 Aligned_cols=276 Identities=17% Similarity=0.156 Sum_probs=201.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c--------CCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S--------AESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~--------~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~ 884 (1269)
+++|+|++++||||||||++++..+. . +++++|++|||+||.|+++++++++ .++..++|+...
T Consensus 90 i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 169 (434)
T 2db3_A 90 ISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSF 169 (434)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCH
T ss_pred HhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCH
Confidence 47789999999999999998833322 1 4689999999999999999988754 467778887654
Q ss_pred eccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhcc--CcceEEEEeecCChHH
Q psy12699 885 FIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL--MAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 885 ~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l--~~~~~~l~~s~~~~~~ 952 (1269)
..+. ...+++|+|+||+.+. .+.+++++|+||||++.|.+++..+..++..+ ......++.+++..+.
T Consensus 170 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~ 249 (434)
T 2db3_A 170 RHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEE 249 (434)
T ss_dssp HHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHH
T ss_pred HHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHH
Confidence 3322 1236899999988442 27899999999999999998888888887664 4455666777777776
Q ss_pred HHHHHHHc-CCceEEEecccCC---ccccc----------cccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceE
Q psy12699 953 VKAIMMTT-NEDVEVYKYKRLT---ELQIE----------DSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVA 1017 (1269)
Q Consensus 953 ~~~l~~~~-~~~~~v~~~~r~~---~l~~~----------~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~ 1017 (1269)
++.+.... .+...+....... ..... ......+.... +.++||+ +++.++.+++.|.+.+
T Consensus 250 ~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~---- 324 (434)
T 2db3_A 250 IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKE---- 324 (434)
T ss_dssp HHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCC----
Confidence 77766543 2222222111000 00000 00000011111 2355555 6666666666665443
Q ss_pred EEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEE
Q psy12699 1018 VIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMV 1097 (1269)
Q Consensus 1018 ~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLV 1097 (1269)
+++..+||++++++|+++++.|+ +|+.+|||
T Consensus 325 -----------------------------------------------~~~~~lhg~~~~~~R~~~l~~F~--~g~~~vLv 355 (434)
T 2db3_A 325 -----------------------------------------------FPTTSIHGDRLQSQREQALRDFK--NGSMKVLI 355 (434)
T ss_dssp -----------------------------------------------CCEEEESTTSCHHHHHHHHHHHH--TSSCSEEE
T ss_pred -----------------------------------------------CCEEEEeCCCCHHHHHHHHHHHH--cCCCcEEE
Confidence 34788999999999999999999 99999999
Q ss_pred EcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1098 ATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1098 aTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
||++++||+|+ ++++||++|+ |.+.++|+||+|||||.|++|.++.+..|+.+
T Consensus 356 aT~v~~rGlDi~~v~~VI~~d~--------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~ 409 (434)
T 2db3_A 356 ATSVASRGLDIKNIKHVINYDM--------------PSKIDDYVHRIGRTGRVGNNGRATSFFDPEKD 409 (434)
T ss_dssp ECGGGTSSCCCTTCCEEEESSC--------------CSSHHHHHHHHTTSSCTTCCEEEEEEECTTTC
T ss_pred EchhhhCCCCcccCCEEEEECC--------------CCCHHHHHHHhcccccCCCCCEEEEEEecccc
Confidence 99999999999 9999999998 88999999999999999999999877776533
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=4.1e-31 Score=317.03 Aligned_cols=275 Identities=16% Similarity=0.143 Sum_probs=194.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~ 889 (1269)
+++|+|+++++|||||||++++..+. .+.+++|++|||+|+.|+++++++++ ..+...+|+.....+..
T Consensus 71 i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 150 (410)
T 2j0s_A 71 IIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR 150 (410)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHH
T ss_pred HhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHH
Confidence 57789999999999999998854433 36799999999999999999997754 45666777654322211
Q ss_pred --CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH
Q psy12699 890 --EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT 959 (1269)
Q Consensus 890 --~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~ 959 (1269)
..+++|+|+||+.+. .+.+++++|+||||++.+.++...+..++..++.....+..+++..+....+...
T Consensus 151 ~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 230 (410)
T 2j0s_A 151 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNK 230 (410)
T ss_dssp HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGG
T ss_pred HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHH
Confidence 125799999987432 2668999999999999888877777777777766655666666665554444332
Q ss_pred -cCCceEEEecccCCccccccc--------------cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCC
Q psy12699 960 -TNEDVEVYKYKRLTELQIEDS--------------AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSL 1023 (1269)
Q Consensus 960 -~~~~~~v~~~~r~~~l~~~~~--------------~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l 1023 (1269)
...+..+.............. ....+.....+.++||+ +++.++.+++.|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------- 299 (410)
T 2j0s_A 231 FMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----------- 299 (410)
T ss_dssp TCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT-----------
T ss_pred HcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC-----------
Confidence 233333221111100000000 00001111233445555 555566665555443
Q ss_pred ChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccc
Q psy12699 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIG 1103 (1269)
Q Consensus 1024 ~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~ 1103 (1269)
|+.+..+||++++++|+++++.|+ +|+.+|||||++++
T Consensus 300 ----------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~~ 337 (410)
T 2j0s_A 300 ----------------------------------------NFTVSSMHGDMPQKERESIMKEFR--SGASRVLISTDVWA 337 (410)
T ss_dssp ----------------------------------------TCCCEEECTTSCHHHHHHHHHHHH--HTSSCEEEECGGGS
T ss_pred ----------------------------------------CCceEEeeCCCCHHHHHHHHHHHH--CCCCCEEEECChhh
Confidence 334788999999999999999999 89999999999999
Q ss_pred ccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1104 MGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1104 ~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|+|+ ++++||++|. |.+.++|+||+||+||.|++|.++.+..+.
T Consensus 338 ~Gidi~~v~~Vi~~~~--------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDL--------------PNNRELYIHRIGRSGRYGRKGVAINFVKND 383 (410)
T ss_dssp SSCCCTTEEEEEESSC--------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGG
T ss_pred CcCCcccCCEEEEECC--------------CCCHHHHHHhcccccCCCCceEEEEEecHH
Confidence 99999 9999999998 889999999999999999999886655443
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=9.2e-31 Score=314.56 Aligned_cols=276 Identities=15% Similarity=0.097 Sum_probs=191.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------------------------CCcEEEEcchHHHHHHHHHHHhcc----
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------------------------AESGVYCGPLKMLATEVFKKSNDR---- 871 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------------------------~~~~lil~Ptr~La~Qi~~~l~~~---- 871 (1269)
+++|+|+++++|||||||++++..+.. +++++|++|||+|+.|++++++++
T Consensus 49 i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (417)
T 2i4i_A 49 IKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS 128 (417)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred HccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC
Confidence 467788888888888888877332221 257999999999999999998764
Q ss_pred CCCceeeecceeeeccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhc--cCc-
Q psy12699 872 GTPCDLITGEEKKFIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLG--LMA- 938 (1269)
Q Consensus 872 g~~v~~~~G~~~~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~--l~~- 938 (1269)
+.++..++|+....++. ...+++|+|+||+.+. .+.+++++|+||||++.+.++...+..++.. ++.
T Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 208 (417)
T 2i4i_A 129 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPK 208 (417)
T ss_dssp SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCB
T ss_pred CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCc
Confidence 45677777775433221 1236899999998443 2678999999999999888888888777653 222
Q ss_pred -ceEEEEeecCChHHHHHHHHH-cCCceEEEeccc---CCccccc----------cccccccCCc-CCCCEEEEe-cHHh
Q psy12699 939 -KEIHVCGEAGAVDLVKAIMMT-TNEDVEVYKYKR---LTELQIE----------DSAVGSLDNI-QPGDCIVCF-SKND 1001 (1269)
Q Consensus 939 -~~~~l~~s~~~~~~~~~l~~~-~~~~~~v~~~~r---~~~l~~~----------~~~~~~l~~~-~~g~~iv~~-s~~~ 1001 (1269)
....+..+++..+....+... ...+..+..... ...+... ......+... ..+.++||+ +++.
T Consensus 209 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~ 288 (417)
T 2i4i_A 209 GVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKG 288 (417)
T ss_dssp TTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHH
T ss_pred CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 234455556665555555433 333333221110 0000000 0000111222 223456666 7777
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHH
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLA 1081 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~ 1081 (1269)
++.+++.|.+.+ +.+..+||++++++|++
T Consensus 289 ~~~l~~~L~~~~---------------------------------------------------~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 289 ADSLEDFLYHEG---------------------------------------------------YACTSIHGDRSQRDREE 317 (417)
T ss_dssp HHHHHHHHHHTT---------------------------------------------------CCEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHCC---------------------------------------------------CCeeEecCCCCHHHHHH
Confidence 777777665543 33788999999999999
Q ss_pred HhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCC
Q psy12699 1082 QASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSH 1160 (1269)
Q Consensus 1082 v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~ 1160 (1269)
+++.|+ +|+.+|||||+++++|+|+ ++++||++|. |.+..+|+||+||+||.|++|.++.+..
T Consensus 318 ~~~~f~--~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~--------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 318 ALHQFR--SGKSPILVATAVAARGLDISNVKHVINFDL--------------PSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp HHHHHH--HTSSCEEEECHHHHTTSCCCCEEEEEESSC--------------CSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred HHHHHH--cCCCCEEEECChhhcCCCcccCCEEEEEcC--------------CCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 999999 8999999999999999999 9999999998 8899999999999999999999977666
Q ss_pred Ccc
Q psy12699 1161 PAL 1163 (1269)
Q Consensus 1161 p~~ 1163 (1269)
+..
T Consensus 382 ~~~ 384 (417)
T 2i4i_A 382 ERN 384 (417)
T ss_dssp GGG
T ss_pred ccc
Confidence 553
No 5
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=2.6e-30 Score=321.09 Aligned_cols=274 Identities=19% Similarity=0.152 Sum_probs=196.4
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC--------CCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG--------EEK 891 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~--------~~~ 891 (1269)
+++|+|+++.+|||+|||++| +.++...++++|++|+++|+.|+.++++++|.++..++|+....+.. ...
T Consensus 56 il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~ 135 (591)
T 2v1x_A 56 TMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNS 135 (591)
T ss_dssp HHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTC
T ss_pred HHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccC
Confidence 367899999999999999998 45555678999999999999999999999999998888876543221 234
Q ss_pred CCCEEEEcccccc-------------CCCCeeEEEEecccccccCC--chhHHHH--HHh-ccCcceEEEEeecCChHH-
Q psy12699 892 PANHVACTVEMTS-------------VNIPYEVAVIDEIQMMRDIT--RGWAWTR--ALL-GLMAKEIHVCGEAGAVDL- 952 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~-------------~l~~~~~lViDEah~~~d~~--rg~~~~~--~ll-~l~~~~~~l~~s~~~~~~- 952 (1269)
..+|+++|||.+. .+.+++++||||||++.+.+ +...+.. .+. ..+..++. ..++++.+.
T Consensus 136 ~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii-~lSAT~~~~v 214 (591)
T 2v1x_A 136 ELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI-GLTATATNHV 214 (591)
T ss_dssp CCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEE-EEESSCCHHH
T ss_pred CCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEE-EEecCCCHHH
Confidence 7899999998542 15589999999999997644 3333322 222 23333334 444444443
Q ss_pred HHHHHHHcCC--ceEEEecccCCcccccc------------ccccccCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCce
Q psy12699 953 VKAIMMTTNE--DVEVYKYKRLTELQIED------------SAVGSLDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEV 1016 (1269)
Q Consensus 953 ~~~l~~~~~~--~~~v~~~~r~~~l~~~~------------~~~~~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~ 1016 (1269)
.+.+....+. ...+........+.+.. .....+... +.+..|||+ ++++++.+++.|.+.+.
T Consensus 215 ~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~-- 292 (591)
T 2v1x_A 215 LTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI-- 292 (591)
T ss_dssp HHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC--
Confidence 3444433322 22222111111111110 011112211 334566666 88888888888766543
Q ss_pred EEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEE
Q psy12699 1017 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096 (1269)
Q Consensus 1017 ~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VL 1096 (1269)
.+..+||+|++++|.++++.|+ +|+.+||
T Consensus 293 -------------------------------------------------~~~~~h~~l~~~~R~~~~~~F~--~g~~~Vl 321 (591)
T 2v1x_A 293 -------------------------------------------------HAGAYHANLEPEDKTTVHRKWS--ANEIQVV 321 (591)
T ss_dssp -------------------------------------------------CEEEECTTSCHHHHHHHHHHHH--TTSSSEE
T ss_pred -------------------------------------------------CEEEecCCCCHHHHHHHHHHHH--cCCCeEE
Confidence 3788999999999999999999 9999999
Q ss_pred EEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1097 VATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1097 VaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|||+++++|||+ +|++||++++ |.|.++|+||+|||||+|++|.++.+..|.
T Consensus 322 VAT~a~~~GID~p~V~~VI~~~~--------------p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 322 VATVAFGMGIDKPDVRFVIHHSM--------------SKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp EECTTSCTTCCCSCEEEEEESSC--------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEechhhcCCCcccccEEEEeCC--------------CCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 999999999999 9999999998 889999999999999999999997666554
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=313.10 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=186.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~- 888 (1269)
+++|+++++++|||||||++++..+. .+.+++|++|||+|+.|++++++++ +..+...+|+.....+.
T Consensus 74 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (414)
T 3eiq_A 74 CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 153 (414)
T ss_dssp HHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHH
T ss_pred HhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHH
Confidence 46789999999999999998743332 3678999999999999999999765 44666666654332221
Q ss_pred --CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 --EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
....++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..+......+..++++.+....+..
T Consensus 154 ~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 233 (414)
T 3eiq_A 154 KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTK 233 (414)
T ss_dssp HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHT
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 1246899999988442 266799999999999988888888888888876666666666776655555554
Q ss_pred H-cCCceEEEecccCCcccc-c-------------cccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCC
Q psy12699 959 T-TNEDVEVYKYKRLTELQI-E-------------DSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGS 1022 (1269)
Q Consensus 959 ~-~~~~~~v~~~~r~~~l~~-~-------------~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~ 1022 (1269)
. ...+..+........... . ......+.....+.++||+ ++++++.+++.|.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------- 305 (414)
T 3eiq_A 234 KFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF-------- 305 (414)
T ss_dssp TTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTC--------
T ss_pred HHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC--------
Confidence 3 333333322111110000 0 0000112223445666666 77778888777765433
Q ss_pred CChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcc
Q psy12699 1023 LPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAI 1102 (1269)
Q Consensus 1023 l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~ 1102 (1269)
.+..+||++++++|+++++.|+ +|+.+|||||+++
T Consensus 306 -------------------------------------------~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 306 -------------------------------------------TVSAMHGDMDQKERDVIMREFR--SGSSRVLITTDLL 340 (414)
T ss_dssp -------------------------------------------CCEEC---CHHHHHHHHHHHHS--CC---CEEECSSC
T ss_pred -------------------------------------------eEEEecCCCCHHHHHHHHHHHH--cCCCcEEEECCcc
Confidence 3778899999999999999999 9999999999999
Q ss_pred cccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1103 GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1103 ~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++|+|+ ++++||+++. |.+..+|+||+||+||.|++|.++....+.
T Consensus 341 ~~Gidip~v~~Vi~~~~--------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 387 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDL--------------PTNRENYIHRIGRGGRFGRKGVAINMVTEE 387 (414)
T ss_dssp C--CCGGGCSCEEESSC--------------CSSTHHHHHHSCCC-------CEEEEECST
T ss_pred ccCCCccCCCEEEEeCC--------------CCCHHHhhhhcCcccCCCCCceEEEEEcHH
Confidence 999999 9999999998 888999999999999999999997666555
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=4.4e-30 Score=306.92 Aligned_cols=275 Identities=16% Similarity=0.116 Sum_probs=194.7
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~- 888 (1269)
+++|+++++.+|||+|||++++..+. .+.+++|++|||+|+.|++++++++ +.++...+|+.....+.
T Consensus 55 i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 134 (400)
T 1s2m_A 55 AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134 (400)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH
T ss_pred HhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH
Confidence 46788999999999999988844333 2568999999999999999998765 45667777765432211
Q ss_pred -CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH-H
Q psy12699 889 -EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM-M 958 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~-~ 958 (1269)
....++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+...... .
T Consensus 135 ~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~ 214 (400)
T 1s2m_A 135 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 214 (400)
T ss_dssp HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHH
Confidence 2246899999988442 36789999999999998766666666676666555455555555554444433 3
Q ss_pred HcCCceEEEecccCCcccccc------------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 959 TTNEDVEVYKYKRLTELQIED------------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 959 ~~~~~~~v~~~~r~~~l~~~~------------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
....+..+............. .....+...+.+.++||+ +++.++.+++.|++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------ 282 (400)
T 1s2m_A 215 HLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------ 282 (400)
T ss_dssp HCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------
T ss_pred HcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------
Confidence 344444332211110000000 000001112334555555 6666666666665433
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1105 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~G 1105 (1269)
+.+..+||++++++|+++++.|+ +|+.+|||||+++++|
T Consensus 283 ---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 283 ---------------------------------------YSCYYSHARMKQQERNKVFHEFR--QGKVRTLVCSDLLTRG 321 (400)
T ss_dssp ---------------------------------------CCEEEECTTSCHHHHHHHHHHHH--TTSSSEEEESSCSSSS
T ss_pred ---------------------------------------CCeEEecCCCCHHHHHHHHHHHh--cCCCcEEEEcCccccC
Confidence 34788999999999999999999 9999999999999999
Q ss_pred ccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1106 LNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1106 IDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|+ ++++||+++. |.+..+|+||+||+||.|++|.++.+..+.
T Consensus 322 idip~~~~Vi~~~~--------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~ 365 (400)
T 1s2m_A 322 IDIQAVNVVINFDF--------------PKTAETYLHRIGRSGRFGHLGLAINLINWN 365 (400)
T ss_dssp CCCTTEEEEEESSC--------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGG
T ss_pred CCccCCCEEEEeCC--------------CCCHHHHHHhcchhcCCCCCceEEEEeccc
Confidence 999 9999999998 889999999999999999999997666555
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.4e-30 Score=354.30 Aligned_cols=319 Identities=19% Similarity=0.227 Sum_probs=212.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hc-----------CCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LS-----------AESGVYCGPLKMLATEVFKKSND----RGTPCDLITGE 881 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~-----------~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~ 881 (1269)
+.+++|++++||||||||++|..++ .+ +.+++|++|+|+||+|+++.+++ .|.+|+..+|+
T Consensus 92 l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd 171 (1724)
T 4f92_B 92 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGD 171 (1724)
T ss_dssp HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSS
T ss_pred HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3468999999999999999983333 21 56899999999999999988754 57789999998
Q ss_pred eeeeccCCCCCCCEEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhcc------CcceEEEEe
Q psy12699 882 EKKFIQGEEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL------MAKEIHVCG 945 (1269)
Q Consensus 882 ~~~~~~~~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l------~~~~~~l~~ 945 (1269)
.....+ ...+++|+|+|||.++ .+++++++||||+|.+.| +||..++..+.++ ..+.+.+++
T Consensus 172 ~~~~~~-~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~ 249 (1724)
T 4f92_B 172 HQLCKE-EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIG 249 (1724)
T ss_dssp CSSCCT-TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCcc-ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 654322 2337899999999543 267899999999999977 6999998765432 122222232
Q ss_pred ecCChHHHHHHHHHcCCc-----eEEEecccCCccccccc-----------------cccc-cCCcCCCCEEEEe-cHHh
Q psy12699 946 EAGAVDLVKAIMMTTNED-----VEVYKYKRLTELQIEDS-----------------AVGS-LDNIQPGDCIVCF-SKND 1001 (1269)
Q Consensus 946 s~~~~~~~~~l~~~~~~~-----~~v~~~~r~~~l~~~~~-----------------~~~~-l~~~~~g~~iv~~-s~~~ 1001 (1269)
..+..++.++++.+.+.. ..+....|++|+..... .... .+....++++||+ +|+.
T Consensus 250 LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~ 329 (1724)
T 4f92_B 250 LSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKE 329 (1724)
T ss_dssp EECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTT
T ss_pred EecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHH
Confidence 222334466666665432 22445567777643110 0011 1223456888888 9999
Q ss_pred HHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCC-CccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHH
Q psy12699 1002 VYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDN-PCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKL 1080 (1269)
Q Consensus 1002 ~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~-~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~ 1080 (1269)
|+.+++.|.+...+.. .. ..|..... ..+.+...........+.+++..| +++|||||++++|.
T Consensus 330 ~~~~A~~l~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~G--va~HHagL~~~~R~ 394 (1724)
T 4f92_B 330 TGKTARAIRDMCLEKD----TL---------GLFLREGSASTEVLRTEAEQCKNLELKDLLPYG--FAIHHAGMTRVDRT 394 (1724)
T ss_dssp THHHHHHHHHHHHHTT----ST---------TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTT--EEEECSSSCTHHHH
T ss_pred HHHHHHHHHHHHhhcc----ch---------hhhcccchhHHHHHHhhhcccccHHHHHHhhcC--EEEEcCCCCHHHHH
Confidence 9999988865311100 00 00000000 000000001111223445566677 89999999999999
Q ss_pred HHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC--ccccccC
Q psy12699 1081 AQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT--HFEKLAG 1158 (1269)
Q Consensus 1081 ~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~--~g~~~~~ 1158 (1269)
.+++.|+ +|.++|||||+++++|||++...||..+..+|+.. .|. ..|++..+|.||+|||||.|. .|.++..
T Consensus 395 ~vE~~F~--~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~-~~~--~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 395 LVEDLFA--DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPE-KGR--WTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp HHHHHHH--TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETT-TTE--EEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHH--CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCc-CCC--cccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 9999999 99999999999999999998888888777665411 121 358999999999999999885 4776444
Q ss_pred CCC
Q psy12699 1159 SHP 1161 (1269)
Q Consensus 1159 ~~p 1161 (1269)
..+
T Consensus 470 ~~~ 472 (1724)
T 4f92_B 470 TSH 472 (1724)
T ss_dssp EES
T ss_pred ecc
Confidence 433
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=9.5e-30 Score=303.01 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=192.6
Q ss_pred CceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccCCCCCC
Q psy12699 825 PLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~~~~~~ 893 (1269)
+++++++|||+|||++++..+. .+++++|++|||+|+.|+++++++++. .+...+|+... .....++
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 122 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE--KNKQINA 122 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSC--TTSCBCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchh--hhccCCC
Confidence 8899999999999988743332 267899999999999999999987553 44445554322 1123378
Q ss_pred CEEEEcccccc--------CCCCeeEEEEeccccccc-CCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHc-CCc
Q psy12699 894 NHVACTVEMTS--------VNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTT-NED 963 (1269)
Q Consensus 894 ~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~-~~~ 963 (1269)
+|+|+|++.+. .+.+++++|+||||++.+ .++...+......++.....+..+++..+....+.... ...
T Consensus 123 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 202 (395)
T 3pey_A 123 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNA 202 (395)
T ss_dssp SEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSC
T ss_pred CEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCC
Confidence 99999988442 267899999999999976 44455555555556555555666666666666655443 222
Q ss_pred eEEEecccCCcccccc--------------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhH
Q psy12699 964 VEVYKYKRLTELQIED--------------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 964 ~~v~~~~r~~~l~~~~--------------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r 1028 (1269)
..+............. .....+.....+.++||+ +++.++.+++.|++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------------- 268 (395)
T 3pey_A 203 NTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH-------------- 268 (395)
T ss_dssp EEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC--------------
T ss_pred eEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC--------------
Confidence 2222111111000000 000112223445667776 77888888877766543
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
.+..+||++++++|+++++.|+ +|+.+|||||+++++|+|+
T Consensus 269 -------------------------------------~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 269 -------------------------------------EVSILHGDLQTQERDRLIDDFR--EGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp -------------------------------------CCEEECTTSCHHHHHHHHHHHH--TTSCCEEEECGGGSSSCCC
T ss_pred -------------------------------------cEEEeCCCCCHHHHHHHHHHHH--CCCCCEEEECChhhcCCCc
Confidence 3778999999999999999999 8999999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++++||++|.++.. ..+.+..+|+||+||+||.|++|.++.+..+.
T Consensus 310 p~~~~Vi~~~~p~~~--------~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 310 PTVSMVVNYDLPTLA--------NGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp TTEEEEEESSCCBCT--------TSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred ccCCEEEEcCCCCCC--------cCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 99999999984321 01358999999999999999999997666554
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.97 E-value=1e-29 Score=304.73 Aligned_cols=277 Identities=17% Similarity=0.122 Sum_probs=188.6
Q ss_pred CCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhccC-----CCceeeecceeeeccCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDRG-----TPCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g-----~~v~~~~G~~~~~~~~~~~ 891 (1269)
++++++++|||+|||++++..+.. +++++|++|||+|+.|+++++++++ ..+....|+..... ....
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-GQKI 142 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-TCCC
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-hhcC
Confidence 389999999999999988443331 4589999999999999998887643 35555666544322 2344
Q ss_pred CCCEEEEcccccc---------CCCCeeEEEEeccccccc-CCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH-c
Q psy12699 892 PANHVACTVEMTS---------VNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT-T 960 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~-~ 960 (1269)
..+|+|+|++.+. .+.+++++|+||||++.+ ..+......+...++.....+..++++.+....+... .
T Consensus 143 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 222 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 222 (412)
T ss_dssp CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhc
Confidence 6899999988442 157899999999999976 4444455555555555555555666666555555543 3
Q ss_pred CCceEEEecccCCccc-ccc---------c----cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 961 NEDVEVYKYKRLTELQ-IED---------S----AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 961 ~~~~~v~~~~r~~~l~-~~~---------~----~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
..+..+.......... ... . ....+.....+.++||+ +++.++.+++.|.+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------------ 290 (412)
T 3fht_A 223 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG------------ 290 (412)
T ss_dssp SSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT------------
T ss_pred CCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC------------
Confidence 3322222111100000 000 0 00001112334555555 6666666666665543
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1105 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~G 1105 (1269)
+.+..+||+|++++|+++++.|+ +|+.+|||||+++++|
T Consensus 291 ---------------------------------------~~~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~~~G 329 (412)
T 3fht_A 291 ---------------------------------------HQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTNVCARG 329 (412)
T ss_dssp ---------------------------------------CCCEEECTTSCHHHHHHHHHHHH--TTSCSEEEECGGGTSS
T ss_pred ---------------------------------------CeEEEecCCCCHHHHHHHHHHHH--CCCCcEEEEcCccccC
Confidence 34788999999999999999999 9999999999999999
Q ss_pred ccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1106 LNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1106 IDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|+ ++++||++|.+... . ...+..+|+||+||+||.|++|.++....+.
T Consensus 330 idip~~~~Vi~~~~p~~~---~-----~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 330 IDVEQVSVVINFDLPVDK---D-----GNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp CCCTTEEEEEESSCCBCS---S-----SSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred CCccCCCEEEEECCCCCC---C-----CCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 999 99999999983321 0 0257899999999999999999997666554
No 11
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=5.3e-30 Score=315.18 Aligned_cols=274 Identities=17% Similarity=0.187 Sum_probs=195.7
Q ss_pred cccCCceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPA 893 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~ 893 (1269)
+++|+|+++++|||+|||++| +.++...++++|++|+++|+.|+.++++++|.++..+.|+....+.. .....
T Consensus 37 il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 116 (523)
T 1oyw_A 37 VLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQI 116 (523)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCC
T ss_pred HHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 367899999999999999998 55555678999999999999999999999999888888765432211 12358
Q ss_pred CEEEEccccccC--------CCCeeEEEEecccccccCC--chhHHH---HHHhccCcceEEEEeecCChHHHHHHHHHc
Q psy12699 894 NHVACTVEMTSV--------NIPYEVAVIDEIQMMRDIT--RGWAWT---RALLGLMAKEIHVCGEAGAVDLVKAIMMTT 960 (1269)
Q Consensus 894 ~Ivv~T~e~~~~--------l~~~~~lViDEah~~~d~~--rg~~~~---~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~ 960 (1269)
+|+++|||.+.. ..+++++||||||++.+.+ +...+. .....++..++..++++......+++....
T Consensus 117 ~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 196 (523)
T 1oyw_A 117 RLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLL 196 (523)
T ss_dssp SEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 999999995531 4689999999999997644 222222 122333333444444333333344555443
Q ss_pred C--CceE-EEecccCCcccccc--------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhH
Q psy12699 961 N--EDVE-VYKYKRLTELQIED--------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 961 ~--~~~~-v~~~~r~~~l~~~~--------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r 1028 (1269)
+ ++.. +....++. +.+.. .....+...+.+..+||+ ++++++.+++.|++.+.
T Consensus 197 ~~~~~~~~~~~~~r~~-l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~-------------- 261 (523)
T 1oyw_A 197 GLNDPLIQISSFDRPN-IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI-------------- 261 (523)
T ss_dssp TCCSCEEEECCCCCTT-EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC--------------
T ss_pred CCCCCeEEeCCCCCCc-eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC--------------
Confidence 2 2222 22222221 11110 011111222334666666 78888888887765443
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
.+..|||+|++++|+++++.|+ +|+.+|||||+++++|||+
T Consensus 262 -------------------------------------~~~~~h~~l~~~~R~~~~~~f~--~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 262 -------------------------------------SAAAYHAGLENNVRADVQEKFQ--RDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp -------------------------------------CEEEECTTSCHHHHHHHHHHHH--TTSCSEEEECTTSCTTTCC
T ss_pred -------------------------------------CEEEecCCCCHHHHHHHHHHHH--cCCCeEEEEechhhCCCCc
Confidence 3788999999999999999999 8999999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++++||+++. |.|.++|+||+|||||.|++|.++.+..|+
T Consensus 303 p~v~~VI~~~~--------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 303 PNVRFVVHFDI--------------PRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp TTCCEEEESSC--------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred cCccEEEEECC--------------CCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 9999999998 889999999999999999999997665554
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=2.8e-30 Score=322.90 Aligned_cols=276 Identities=14% Similarity=0.099 Sum_probs=191.5
Q ss_pred cCCceEEeccCCCCchHHHHHHH----hc-------CCcEEEEcchHHHHHHHHHHHhcc-----C---CCceeeeccee
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERF----LS-------AESGVYCGPLKMLATEVFKKSNDR-----G---TPCDLITGEEK 883 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l----~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g---~~v~~~~G~~~ 883 (1269)
+|+|++++||||||||++|+..+ .+ +.+++|++|||+||.|++++++++ + ..+...+|+..
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 189 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSC
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcC
Confidence 56788899999999998873332 22 248999999999999999998763 2 34556666644
Q ss_pred eeccCC---CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCc-------ceEEEE
Q psy12699 884 KFIQGE---EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-------KEIHVC 944 (1269)
Q Consensus 884 ~~~~~~---~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-------~~~~l~ 944 (1269)
...+.. ..+++|+|+||+.+. .+++++++|+||||++.+.+++..+..++..++. ....+.
T Consensus 190 ~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~ 269 (563)
T 3i5x_A 190 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL 269 (563)
T ss_dssp HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEE
Confidence 322211 226899999998543 3788999999999999998888888777644321 334555
Q ss_pred eecCChHHHHHHHHHcC-CceEEE--ecccCCccc---cccc-------------ccc----ccCC-cCCCCEEEEe-cH
Q psy12699 945 GEAGAVDLVKAIMMTTN-EDVEVY--KYKRLTELQ---IEDS-------------AVG----SLDN-IQPGDCIVCF-SK 999 (1269)
Q Consensus 945 ~s~~~~~~~~~l~~~~~-~~~~v~--~~~r~~~l~---~~~~-------------~~~----~l~~-~~~g~~iv~~-s~ 999 (1269)
.+++..+.++.+..... .+..+. ......+.. .... ... .+.. ...+.++||+ ++
T Consensus 270 ~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~ 349 (563)
T 3i5x_A 270 FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTV 349 (563)
T ss_dssp EESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCH
T ss_pred EEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcH
Confidence 66666655666654432 222221 111100000 0000 000 0000 1223555555 66
Q ss_pred HhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhH
Q psy12699 1000 NDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTK 1079 (1269)
Q Consensus 1000 ~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR 1079 (1269)
+.++.+++.|++.. ..|+.+..+||+|++++|
T Consensus 350 ~~~~~l~~~L~~~~------------------------------------------------~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 350 KFTSFLCSILKNEF------------------------------------------------KKDLPILEFHGKITQNKR 381 (563)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------TTTSCEEEESTTSCHHHH
T ss_pred HHHHHHHHHHHHhc------------------------------------------------cCCceEEEecCCCCHHHH
Confidence 77777776665431 124458899999999999
Q ss_pred HHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccC
Q psy12699 1080 LAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAG 1158 (1269)
Q Consensus 1080 ~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~ 1158 (1269)
+++++.|+ +|+.+|||||+++++|||+ ++++||++|. |.+.++|+||+|||||.|+.|.++.+
T Consensus 382 ~~~~~~f~--~g~~~vLvaT~~~~~GiDip~v~~VI~~~~--------------p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 382 TSLVKRFK--KDESGILVCTDVGARGMDFPNVHEVLQIGV--------------PSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp HHHHHHHH--HCSSEEEEECGGGTSSCCCTTCCEEEEESC--------------CSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred HHHHHHHh--cCCCCEEEEcchhhcCCCcccCCEEEEECC--------------CCchhhhhhhcCccccCCCCceEEEE
Confidence 99999999 9999999999999999999 8999999998 88999999999999999999999777
Q ss_pred CCCc
Q psy12699 1159 SHPA 1162 (1269)
Q Consensus 1159 ~~p~ 1162 (1269)
..|.
T Consensus 446 ~~~~ 449 (563)
T 3i5x_A 446 ICKD 449 (563)
T ss_dssp EEGG
T ss_pred Echh
Confidence 6665
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=5.5e-30 Score=304.94 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=189.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~ 888 (1269)
+++|+++++.+|||+|||++++..+.. +.+++|++|||+|+.|++++++++ +.++...+|+.......
T Consensus 42 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 121 (391)
T 1xti_A 42 AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121 (391)
T ss_dssp HTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH
T ss_pred HhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH
Confidence 366888999999999999887433322 568999999999999999988765 56788888875432221
Q ss_pred ---CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccC-CchhHHHHHHhccCcceEEEEeecCChHHHHHH
Q psy12699 889 ---EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDI-TRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAI 956 (1269)
Q Consensus 889 ---~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~-~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l 956 (1269)
....++|+|+|++.+. .+.+++++|+||||++.+. ++...+..++...+.....+..++++.+....+
T Consensus 122 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 201 (391)
T 1xti_A 122 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 201 (391)
T ss_dssp HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHH
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHH
Confidence 1124799999998543 3679999999999999763 344445555555554444444455544434443
Q ss_pred H-HHcCCceEEEeccc--CCcccccc------------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEe
Q psy12699 957 M-MTTNEDVEVYKYKR--LTELQIED------------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIY 1020 (1269)
Q Consensus 957 ~-~~~~~~~~v~~~~r--~~~l~~~~------------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~ 1020 (1269)
. .....+..+..... ........ .....+...+.+.++||+ +++.++.+++.|.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~------- 274 (391)
T 1xti_A 202 CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN------- 274 (391)
T ss_dssp HHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT-------
T ss_pred HHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC-------
Confidence 3 33333333322111 00000000 000011112334455555 6666666666655433
Q ss_pred CCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcC
Q psy12699 1021 GSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATD 1100 (1269)
Q Consensus 1021 g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTd 1100 (1269)
+.+..+||++++++|+++++.|+ +|+.+|||||+
T Consensus 275 --------------------------------------------~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~ 308 (391)
T 1xti_A 275 --------------------------------------------FPAIAIHRGMPQEERLSRYQQFK--DFQRRILVATN 308 (391)
T ss_dssp --------------------------------------------CCEEEECTTSCHHHHHHHHHHHH--TTCCSEEEESC
T ss_pred --------------------------------------------CcEEEEeCCCCHHHHHHHHHHHh--cCCCcEEEECC
Confidence 34788999999999999999999 99999999999
Q ss_pred cccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1101 AIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1101 v~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++++|+|+ ++++||+++. |.+..+|+||+||+||.|++|.++.+..+.
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~--------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDM--------------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp CCSSCBCCTTEEEEEESSC--------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred hhhcCCCcccCCEEEEeCC--------------CCCHHHHHHhcccccCCCCceEEEEEEccc
Confidence 99999999 8999999998 889999999999999999999997766555
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=9.6e-30 Score=299.76 Aligned_cols=272 Identities=16% Similarity=0.109 Sum_probs=192.4
Q ss_pred ccC-CceEEeccCCCCchHHHHHHHh------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccCC-
Q psy12699 822 YCG-PLKIHAGPTNSGKTYHALERFL------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQGE- 889 (1269)
Q Consensus 822 ~~g-~~vlv~apTGsGKTl~~l~~l~------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~~- 889 (1269)
++| +++++.+|||+|||++++..+. .+.+++|++|+++|+.|++++++++ +..+...+|+....++..
T Consensus 41 ~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 120 (367)
T 1hv8_A 41 LNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 120 (367)
T ss_dssp HHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH
T ss_pred hCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh
Confidence 445 6888888999999888743332 2678999999999999999999764 345666777654322211
Q ss_pred CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH-c
Q psy12699 890 EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT-T 960 (1269)
Q Consensus 890 ~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~-~ 960 (1269)
....+|+|+|++.+. .+.+++++|+||||++.+.++...+...+..+......+..++++.+........ .
T Consensus 121 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 200 (367)
T 1hv8_A 121 LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYM 200 (367)
T ss_dssp HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHC
T ss_pred cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHc
Confidence 116899999988443 2678999999999999887777777777766655555555566665554444433 3
Q ss_pred CCceEEEecccCCcccccc----------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHH
Q psy12699 961 NEDVEVYKYKRLTELQIED----------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKL 1029 (1269)
Q Consensus 961 ~~~~~v~~~~r~~~l~~~~----------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~ 1029 (1269)
+....+.. .......... .....+. -..+..+||+ ++++++.+++.|++.+.
T Consensus 201 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------------- 263 (367)
T 1hv8_A 201 GDYSFIKA-KINANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGF--------------- 263 (367)
T ss_dssp CSEEEEEC-CSSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTC---------------
T ss_pred CCCeEEEe-cCCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCC---------------
Confidence 32222221 1111111000 0000111 1233566666 77777777777765433
Q ss_pred HHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-
Q psy12699 1030 AQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL- 1108 (1269)
Q Consensus 1030 ~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi- 1108 (1269)
.+..+||++++++|+++++.|+ +|+.+|||||+++++|+|+
T Consensus 264 ------------------------------------~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~~~~~Gid~~ 305 (367)
T 1hv8_A 264 ------------------------------------KAGAIHGDLSQSQREKVIRLFK--QKKIRILIATDVMSRGIDVN 305 (367)
T ss_dssp ------------------------------------CEEEECSSSCHHHHHHHHHHHH--TTSSSEEEECTTHHHHCCCS
T ss_pred ------------------------------------CeEEeeCCCCHHHHHHHHHHHH--cCCCeEEEECChhhcCCCcc
Confidence 3778899999999999999999 8999999999999999999
Q ss_pred CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 ~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++++||+++. |.+..+|.||+||+||.|++|.++....+.
T Consensus 306 ~~~~Vi~~~~--------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 345 (367)
T 1hv8_A 306 DLNCVINYHL--------------PQNPESYMHRIGRTGRAGKKGKAISIINRR 345 (367)
T ss_dssp CCSEEEESSC--------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred cCCEEEEecC--------------CCCHHHhhhcccccccCCCccEEEEEEcHH
Confidence 9999999998 889999999999999999999886665554
No 15
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.9e-30 Score=338.77 Aligned_cols=316 Identities=22% Similarity=0.228 Sum_probs=208.5
Q ss_pred cccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+.+|++++++||||||||++|..+ +..+++++|++|||+|+.|+++++++....+++++|+... +.+++|+
T Consensus 196 i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----~~~~~Il 270 (1108)
T 3l9o_A 196 IDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----NPDAGCL 270 (1108)
T ss_dssp HTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----CCSCSEE
T ss_pred HHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----CCCCCEE
Confidence 478899999999999999998433 3448899999999999999999998866689999998654 3368999
Q ss_pred EEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh---HHHHHHHHHcCCceE
Q psy12699 897 ACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV---DLVKAIMMTTNEDVE 965 (1269)
Q Consensus 897 v~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~---~~~~~l~~~~~~~~~ 965 (1269)
|+|++.+. .+.++++|||||||++.|.+|+..|..++..++.....++.++|.. .+...+....+.+..
T Consensus 271 V~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~ 350 (1108)
T 3l9o_A 271 VMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 350 (1108)
T ss_dssp EEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEE
T ss_pred EeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 99998543 2678999999999999999999999999888876655555444432 222333333333333
Q ss_pred -EEecccCCcccccccc---------------------------------------------------------------
Q psy12699 966 -VYKYKRLTELQIEDSA--------------------------------------------------------------- 981 (1269)
Q Consensus 966 -v~~~~r~~~l~~~~~~--------------------------------------------------------------- 981 (1269)
+....++.++......
T Consensus 351 vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 351 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred EEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 3334444443221000
Q ss_pred --ccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhh-hccCccc
Q psy12699 982 --VGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDA-IGMGLNF 1057 (1269)
Q Consensus 982 --~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~-~~~~~~~ 1057 (1269)
+..+.....+.++||+ +++.|+.++..|...+.... ......... |.+... .+...+. ......+
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~------~e~~~i~~~--~~~~~~---~l~~~d~~l~~~~~l 499 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD------DEKEALTKI--FNNAIA---LLPETDRELPQIKHI 499 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----------CHHHH--GGGSCT---HHHHHTTCCHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCH------HHHHHHHHH--HHHHHh---hcchhhhhhhhHHHH
Confidence 0000001223667666 88888888888755332210 000000000 000000 0000000 0000111
Q ss_pred cccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCH
Q psy12699 1058 RGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISV 1136 (1269)
Q Consensus 1058 ~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 1136 (1269)
..++..| +++|||+|++.+|+.+++.|+ +|.++|||||+++++|||+ ++++||+++. +++ + ...+|.|.
T Consensus 500 ~~~l~~g--V~~~Hg~l~~~~R~~v~~~F~--~G~ikVLVAT~vla~GIDiP~v~~VI~~~~-~~d----~-~~~r~iS~ 569 (1108)
T 3l9o_A 500 LPLLRRG--IGIHHSGLLPILKEVIEILFQ--EGFLKVLFATETFSIGLNMPAKTVVFTSVR-KWD----G-QQFRWVSG 569 (1108)
T ss_dssp THHHHHT--EEEECSCSCHHHHHHHHHHHH--HTCCCEEEEESCCCSCCCC--CEEEESCSE-EES----S-SCEEECCH
T ss_pred HHhhhcC--eeeecCCCCHHHHHHHHHHHh--CCCCeEEEECcHHhcCCCCCCceEEEecCc-ccC----c-cccccCCH
Confidence 2223344 899999999999999999999 9999999999999999999 9999998765 222 2 22458899
Q ss_pred hHHHHHhcccCCCC--CccccccCCCCc
Q psy12699 1137 SAALQIAGRAGRFN--THFEKLAGSHPA 1162 (1269)
Q Consensus 1137 ~~y~QR~GRaGR~G--~~g~~~~~~~p~ 1162 (1269)
.+|+||+|||||.| ..|.++....+.
T Consensus 570 ~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99999999999999 567775555444
No 16
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-30 Score=334.12 Aligned_cols=313 Identities=21% Similarity=0.199 Sum_probs=208.2
Q ss_pred cccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
+.+|+++++++|||||||+++..+ +..+.+++|++|||+|++|+++++++...++++++|+.... .+.+|+
T Consensus 98 l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----~~~~Iv 172 (1010)
T 2xgj_A 98 IDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----PDAGCL 172 (1010)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----TTCSEE
T ss_pred HHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----CCCCEE
Confidence 577899999999999999998333 33488999999999999999999987555899999987652 257999
Q ss_pred EEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChH---HHHHHHHHcCCceE
Q psy12699 897 ACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD---LVKAIMMTTNEDVE 965 (1269)
Q Consensus 897 v~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~---~~~~l~~~~~~~~~ 965 (1269)
|+|+|.+. .+.+++++||||+|++.|.+||..|+.++..++.....+..+++..+ +.+.+....+.+..
T Consensus 173 V~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~ 252 (1010)
T 2xgj_A 173 VMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCH 252 (1010)
T ss_dssp EEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEE
T ss_pred EEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeE
Confidence 99998543 37899999999999999999999999998888765555554444432 12233222343444
Q ss_pred -EEecccCCcccccccc----------------------------------------------------------cc---
Q psy12699 966 -VYKYKRLTELQIEDSA----------------------------------------------------------VG--- 983 (1269)
Q Consensus 966 -v~~~~r~~~l~~~~~~----------------------------------------------------------~~--- 983 (1269)
+....++.++...... ..
T Consensus 253 vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~ 332 (1010)
T 2xgj_A 253 IVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 332 (1010)
T ss_dssp EEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHH
T ss_pred EEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHH
Confidence 3333444433211000 00
Q ss_pred ----ccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHH--HHhcc-c-CCCCCCccchhhhhhhccC
Q psy12699 984 ----SLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKL--AQASK-F-NDPDNPCKVMVATDAIGMG 1054 (1269)
Q Consensus 984 ----~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~--~~~~~-f-~~~~~~~~~l~~t~~~~~~ 1054 (1269)
.+.....+.++||+ +++.|+.+++.|.+.+.. ...++. ..... . .........+ ...
T Consensus 333 ~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~--------~~~e~~~i~~~~~~~~~~l~~~d~~l------~~~ 398 (1010)
T 2xgj_A 333 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN--------SDDEKEALTKIFNNAIALLPETDREL------PQI 398 (1010)
T ss_dssp HHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCC--------CHHHHHHHHHHHHHHHTTSCGGGTTC------HHH
T ss_pred HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCC--------ChHHHHHHHHHHHHHHHhcchhhhcc------hhH
Confidence 00000223677776 888999998888765432 111111 10000 0 0000000000 000
Q ss_pred ccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCcccccc
Q psy12699 1055 LNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDL 1133 (1269)
Q Consensus 1055 ~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p 1133 (1269)
..+..++..| +++|||+|++++|+.+++.|+ +|.++|||||+++++|||+ +++.||+ +..+|+ | ...+|
T Consensus 399 ~~l~~~l~~g--I~~~Hggl~~~eR~~ve~~F~--~G~ikVLVAT~~la~GIDiP~~~vVI~-~~~kfd----~-~~~rp 468 (1010)
T 2xgj_A 399 KHILPLLRRG--IGIHHSGLLPILKEVIEILFQ--EGFLKVLFATETFSIGLNMPAKTVVFT-SVRKWD----G-QQFRW 468 (1010)
T ss_dssp HHHHHHHHHT--EEEESTTSCHHHHHHHHHHHH--TTCCSEEEEEGGGGGSTTCCBSEEEES-CSEEEC----S-SCEEE
T ss_pred HHHHHHHhCC--eeEECCCCCHHHHHHHHHHHh--cCCCcEEEEehHhhccCCCCCceEEEe-CCcccC----C-cCCcc
Confidence 0111223344 899999999999999999999 9999999999999999999 7777666 333332 1 11358
Q ss_pred CCHhHHHHHhcccCCCCCc--cccccCCCCc
Q psy12699 1134 ISVSAALQIAGRAGRFNTH--FEKLAGSHPA 1162 (1269)
Q Consensus 1134 ~s~~~y~QR~GRaGR~G~~--g~~~~~~~p~ 1162 (1269)
.+..+|+||+|||||.|++ |.++....+.
T Consensus 469 ~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 469 VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp CCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999974 8886555444
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=2.7e-30 Score=316.40 Aligned_cols=277 Identities=17% Similarity=0.125 Sum_probs=95.5
Q ss_pred CCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhccC-----CCceeeecceeeeccCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDRG-----TPCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g-----~~v~~~~G~~~~~~~~~~~ 891 (1269)
+++++++||||||||++|+..+.. +++++|++|||+|+.|+++++++++ ..+....|+.... .....
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 209 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-RGQKI 209 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-TTCCC
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-ccccC
Confidence 378888888888888887544432 3489999999999999988876532 3455566654332 22234
Q ss_pred CCCEEEEcccccc---------CCCCeeEEEEecccccccC-CchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcC
Q psy12699 892 PANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDI-TRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTN 961 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~-~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~ 961 (1269)
..+|+|+||+.+. .+.+++++|+||+|++.+. ++......+...++.....++.++++......+.....
T Consensus 210 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 289 (479)
T 3fmp_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (479)
T ss_dssp CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHS
T ss_pred CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHc
Confidence 6799999988441 2579999999999999764 34444455555555556666677777766666654432
Q ss_pred -CceEEEecccCCcccc----------ccccc----cccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCCh
Q psy12699 962 -EDVEVYKYKRLTELQI----------EDSAV----GSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPP 1025 (1269)
Q Consensus 962 -~~~~v~~~~r~~~l~~----------~~~~~----~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~ 1025 (1269)
.+..+........... ..... ..+.....+.++||+ +++.++.+++.|.+.
T Consensus 290 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~------------- 356 (479)
T 3fmp_B 290 PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE------------- 356 (479)
T ss_dssp SSEEEEEEC-----------------------------------------------------------------------
T ss_pred CCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC-------------
Confidence 2222221111000000 00000 001111223444444 555555555544332
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMG 1105 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~G 1105 (1269)
|+.+..+||+|++++|+.+++.|+ +|+.+|||||+++++|
T Consensus 357 --------------------------------------~~~v~~lh~~~~~~~R~~~~~~f~--~g~~~iLv~T~~~~~G 396 (479)
T 3fmp_B 357 --------------------------------------GHQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTNVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------CccEEEecCCCCHHHHHHHHHHHH--cCCCcEEEEccccccC
Confidence 344788999999999999999999 9999999999999999
Q ss_pred ccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1106 LNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1106 IDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
+|+ ++++||++|++... + ...+..+|+||+|||||.|++|.++.+..+.
T Consensus 397 lDip~v~~VI~~d~p~~~----~----~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 397 IDVEQVSVVINFDLPVDK----D----GNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp ----------------------------------------------------------
T ss_pred CccccCCEEEEecCCCCC----c----cCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 999 99999999983221 0 0156789999999999999999997776655
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=7.6e-30 Score=319.39 Aligned_cols=276 Identities=14% Similarity=0.106 Sum_probs=190.1
Q ss_pred cCCceEEeccCCCCchHHHHHHHh----c-------CCcEEEEcchHHHHHHHHHHHhcc-----C---CCceeeeccee
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERFL----S-------AESGVYCGPLKMLATEVFKKSNDR-----G---TPCDLITGEEK 883 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l~----~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g---~~v~~~~G~~~ 883 (1269)
+|+|++++||||+|||++|+..+. . +.+++|++|||+|+.|++++++++ + ..+....|+..
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~ 138 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 138 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSC
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCcc
Confidence 577888888888888888733322 2 348999999999999999998763 2 24555666643
Q ss_pred eeccCC---CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCc-------ceEEEE
Q psy12699 884 KFIQGE---EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-------KEIHVC 944 (1269)
Q Consensus 884 ~~~~~~---~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-------~~~~l~ 944 (1269)
...+.. ..+++|+|+||+.+. .+.+++++|+||||++.+.++...+..++..++. ....+.
T Consensus 139 ~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~ 218 (579)
T 3sqw_A 139 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLL 218 (579)
T ss_dssp HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEE
Confidence 322211 126899999998542 3788999999999999998888888776644422 334555
Q ss_pred eecCChHHHHHHHHHc-CCceEEE--ecccCCccc---cccc-------------ccc----ccCC-cCCCCEEEEe-cH
Q psy12699 945 GEAGAVDLVKAIMMTT-NEDVEVY--KYKRLTELQ---IEDS-------------AVG----SLDN-IQPGDCIVCF-SK 999 (1269)
Q Consensus 945 ~s~~~~~~~~~l~~~~-~~~~~v~--~~~r~~~l~---~~~~-------------~~~----~l~~-~~~g~~iv~~-s~ 999 (1269)
.+++..+.++.+.... ..+..+. ......+.. .... ... .+.. ...+.++||+ ++
T Consensus 219 ~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~ 298 (579)
T 3sqw_A 219 FSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTV 298 (579)
T ss_dssp EESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSH
T ss_pred EeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcH
Confidence 6666666566665443 2222221 111100000 0000 000 0000 1223455555 66
Q ss_pred HhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhH
Q psy12699 1000 NDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTK 1079 (1269)
Q Consensus 1000 ~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR 1079 (1269)
+.++.+++.|++.. ..|+.+..+||+|++++|
T Consensus 299 ~~~~~l~~~L~~~~------------------------------------------------~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 299 KFTSFLCSILKNEF------------------------------------------------KKDLPILEFHGKITQNKR 330 (579)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------TTTSCEEEESTTSCHHHH
T ss_pred HHHHHHHHHHHHhh------------------------------------------------cCCCcEEEecCCCCHHHH
Confidence 66666666665421 124458899999999999
Q ss_pred HHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccC
Q psy12699 1080 LAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAG 1158 (1269)
Q Consensus 1080 ~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~ 1158 (1269)
.++++.|+ +|+.+|||||+++++|||+ ++++||+++. |.+.++|+||+|||||.|++|.++.+
T Consensus 331 ~~~~~~F~--~g~~~vLVaT~~~~~GiDip~v~~VI~~~~--------------p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 331 TSLVKRFK--KDESGILVCTDVGARGMDFPNVHEVLQIGV--------------PSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp HHHHHHHH--HCSSEEEEECGGGTSSCCCTTCCEEEEESC--------------CSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred HHHHHHhh--cCCCeEEEEcchhhcCCCcccCCEEEEcCC--------------CCCHHHhhhhccccccCCCCceEEEE
Confidence 99999999 8999999999999999999 8999999998 88999999999999999999999777
Q ss_pred CCCc
Q psy12699 1159 SHPA 1162 (1269)
Q Consensus 1159 ~~p~ 1162 (1269)
..|.
T Consensus 395 ~~~~ 398 (579)
T 3sqw_A 395 ICKD 398 (579)
T ss_dssp EEGG
T ss_pred Eccc
Confidence 6665
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=5.7e-30 Score=298.12 Aligned_cols=269 Identities=19% Similarity=0.189 Sum_probs=189.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-cCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccC-CCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-SAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQG-EEKPAN 894 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~-~~~~~~ 894 (1269)
+++|+++++.+|||+|||++++..+. .+.+++|++|+|+|+.|+++++++++ .++...+|+.....+. ....++
T Consensus 28 i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (337)
T 2z0m_A 28 MLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNAD 107 (337)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCS
T ss_pred HhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCC
Confidence 46789999999999999998854444 48899999999999999999998643 4666777765432221 112589
Q ss_pred EEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH-HHcCCceE
Q psy12699 895 HVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM-MTTNEDVE 965 (1269)
Q Consensus 895 Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~-~~~~~~~~ 965 (1269)
|+|+|++.+. .+.+++++|+||||++.+.++...+..++...+.....+..++++.+...... ........
T Consensus 108 i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~ 187 (337)
T 2z0m_A 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEE 187 (337)
T ss_dssp EEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEE
T ss_pred EEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCcee
Confidence 9999988432 26789999999999998877777777777666655555555555555544444 33333333
Q ss_pred EEecccCCcccccc--------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccC
Q psy12699 966 VYKYKRLTELQIED--------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1036 (1269)
Q Consensus 966 v~~~~r~~~l~~~~--------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~ 1036 (1269)
+............. .....+.....+.++||+ ++++++.+++.|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------------------- 241 (337)
T 2z0m_A 188 IEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------------------- 241 (337)
T ss_dssp EECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--------------------------
T ss_pred eecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--------------------------
Confidence 32211111000000 000111112333455555 5555554443321
Q ss_pred CCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEE
Q psy12699 1037 DPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIF 1115 (1269)
Q Consensus 1037 ~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~ 1115 (1269)
++..+||+++.++|+++++.|+ +|+.+|||||+++++|+|+ ++++||+
T Consensus 242 -----------------------------~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 242 -----------------------------NAIELRGDLPQSVRNRNIDAFR--EGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp -----------------------------TEEEECTTSCHHHHHHHHHHHH--TTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred -----------------------------hhhhhcCCCCHHHHHHHHHHHH--cCCCcEEEEcCccccCCCccCCCEEEE
Confidence 1678899999999999999999 9999999999999999999 9999999
Q ss_pred cCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCC
Q psy12699 1116 YSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSH 1160 (1269)
Q Consensus 1116 ~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~ 1160 (1269)
++. |.+..+|+||+||+||.|++|.++.+..
T Consensus 291 ~~~--------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 291 FDA--------------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp SSC--------------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ecC--------------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 998 8899999999999999999999865554
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=8e-29 Score=318.08 Aligned_cols=311 Identities=20% Similarity=0.160 Sum_probs=199.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h-cCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L-SAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~-~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+.+++++++++|||||||+++...+ . .+++++|++|+|+||.|++++++. +|.+++..+|+....+.. ...
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-~~~ 121 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-LKN 121 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-GGG
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-cCC
Confidence 4567888888888888888773332 3 478999999999999999999853 577899999986554332 127
Q ss_pred CCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCce
Q psy12699 893 ANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDV 964 (1269)
Q Consensus 893 ~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~ 964 (1269)
++|+|+|+|.+. .+++++++|+||+|++.|.+|+..++.++..++..++..++++.+. .+++....+.+.
T Consensus 122 ~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~ 199 (715)
T 2va8_A 122 YDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN--YKQIAKWLGAEP 199 (715)
T ss_dssp CSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT--HHHHHHHHTCEE
T ss_pred CCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC--HHHHHHHhCCCc
Confidence 899999998543 2789999999999999988999998888766654444444333221 244444333211
Q ss_pred EEEecccCCcccc----------------cc----------ccccccC-Cc-CCCCEEEEe-cHHhHHHHHHHHHhcCCc
Q psy12699 965 EVYKYKRLTELQI----------------ED----------SAVGSLD-NI-QPGDCIVCF-SKNDVYTVSRGIESRGTE 1015 (1269)
Q Consensus 965 ~v~~~~r~~~l~~----------------~~----------~~~~~l~-~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~ 1015 (1269)
+....|+.++.. .+ .....+. .+ +.++++||+ ++++++.+++.|.+....
T Consensus 200 -~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~ 278 (715)
T 2va8_A 200 -VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNF 278 (715)
T ss_dssp -EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTS
T ss_pred -cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhh
Confidence 222223322211 00 0000000 11 346888888 999999999999875432
Q ss_pred eEEEeCCCChhhHHH--HhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCe
Q psy12699 1016 VAVIYGSLPPTTKLA--QASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPC 1093 (1269)
Q Consensus 1016 ~~~i~g~l~~~~r~~--~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~ 1093 (1269)
. .+++.+... ....- ..... ......+..+...| +.+|||+|++++|+.+++.|+ +|++
T Consensus 279 ~-----~~~~~~~~~~~~~~~~---i~~~~-------~~~~~~l~~~~~~~--v~~~h~~l~~~~r~~v~~~f~--~g~~ 339 (715)
T 2va8_A 279 V-----SLDENALSEILKQLDD---IEEGG-------SDEKELLKSLISKG--VAYHHAGLSKALRDLIEEGFR--QRKI 339 (715)
T ss_dssp S-----CCCHHHHHHHHHHHHT---CCSSC-------HHHHHHHHHHHTTT--EEEECTTSCHHHHHHHHHHHH--TTCS
T ss_pred c-----cCChHHHHHHHHHHHH---hhhcc-------ccccHHHHHHHhcC--EEEECCCCCHHHHHHHHHHHH--cCCC
Confidence 0 122222111 11000 00000 00001122223334 899999999999999999999 9999
Q ss_pred eEEEEcCcccccccc-CceEEEE----cCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC--ccccccCCCC
Q psy12699 1094 KVMVATDAIGMGLNL-SIRRVIF----YSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT--HFEKLAGSHP 1161 (1269)
Q Consensus 1094 ~VLVaTdv~~~GIDi-~v~~VI~----~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~--~g~~~~~~~p 1161 (1269)
+|||||+++++|||+ ++++||+ ||... |.. ..|.|.++|.||+|||||.|. .|.|+....+
T Consensus 340 ~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~------~~~-~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 340 KVIVATPTLAAGVNLPARTVIIGDIYRFNKKI------AGY-YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp CEEEECGGGGGSSCCCBSEEEECCC---------------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred eEEEEChHHhcccCCCceEEEEeCCeeccccC------CCC-CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 999999999999999 8988888 44210 111 358999999999999999984 6777554433
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=6.9e-29 Score=317.65 Aligned_cols=307 Identities=20% Similarity=0.168 Sum_probs=201.8
Q ss_pred ccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceeeeccCCCCCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
.+|+|+++++|||||||+++... +.++++++|++|+|+||.|++++++. .|.+++..+|+....+.. ...++
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-~~~~~ 116 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH-LGDCD 116 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSSC-STTCS
T ss_pred hCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchhh-ccCCC
Confidence 56788888888888888887333 34578999999999999999999854 467899999987654432 23789
Q ss_pred EEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhcc---CcceEEEEeecCChHHHHHHHHHcCCc
Q psy12699 895 HVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL---MAKEIHVCGEAGAVDLVKAIMMTTNED 963 (1269)
Q Consensus 895 Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l---~~~~~~l~~s~~~~~~~~~l~~~~~~~ 963 (1269)
|+|+|||.+. .+++++++|+||+|++.+.+|+..++.++..+ ..+...+..+++.. ..+++....+.+
T Consensus 117 Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~-n~~~~~~~l~~~ 195 (702)
T 2p6r_A 117 IIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP-NVTEIAEWLDAD 195 (702)
T ss_dssp EEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT-THHHHHHHTTCE
T ss_pred EEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC-CHHHHHHHhCCC
Confidence 9999998543 27799999999999999989999888776544 22323333333332 245555555432
Q ss_pred eEEEecccCCccccc----------cc---------cccccC-Cc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeC
Q psy12699 964 VEVYKYKRLTELQIE----------DS---------AVGSLD-NI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYG 1021 (1269)
Q Consensus 964 ~~v~~~~r~~~l~~~----------~~---------~~~~l~-~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g 1021 (1269)
. +....|+.++... +. ....+. .+ +.++++||+ ++++++.+++.|.+...+
T Consensus 196 ~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------ 268 (702)
T 2p6r_A 196 Y-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAK------ 268 (702)
T ss_dssp E-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHT------
T ss_pred c-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHh------
Confidence 2 2333344333211 00 000000 01 456888888 999999999998764211
Q ss_pred CCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCc
Q psy12699 1022 SLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDA 1101 (1269)
Q Consensus 1022 ~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv 1101 (1269)
.++.......+.. .. .......+......| +.+|||+|++++|+.+++.|+ +|+++|||||++
T Consensus 269 ~~~~~~~~~~i~~--~~-----------~~~~~~~l~~~~~~~--v~~~h~~l~~~~R~~v~~~f~--~g~~~vlvaT~~ 331 (702)
T 2p6r_A 269 YVENEGLEKAILE--EN-----------EGEMSRKLAECVRKG--AAFHHAGLLNGQRRVVEDAFR--RGNIKVVVATPT 331 (702)
T ss_dssp TCCCSSHHHHHHT--TC-----------CSHHHHHHHHHHHTT--CCEECTTSCHHHHHHHHHHHH--TTSCCEEEECST
T ss_pred hcChHHHHHHHHh--hc-----------cccccHHHHHHHhcC--eEEecCCCCHHHHHHHHHHHH--CCCCeEEEECcH
Confidence 0010000000100 00 000001111222333 788999999999999999999 999999999999
Q ss_pred ccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC--ccccccCCCC
Q psy12699 1102 IGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT--HFEKLAGSHP 1161 (1269)
Q Consensus 1102 ~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~--~g~~~~~~~p 1161 (1269)
+++|||+ ++++||+. ..+|+ |. ..|.|.++|.||+|||||.|. .|.|+....+
T Consensus 332 l~~Gidip~~~~VI~~-~~~yd----~~--~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 332 LAAGVNLPARRVIVRS-LYRFD----GY--SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp TTSSSCCCBSEEEECC-SEEES----SS--EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred HhccCCCCceEEEEcC-ceeeC----CC--CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 9999999 88888872 22222 11 248999999999999999984 6777444433
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=3.3e-30 Score=307.07 Aligned_cols=275 Identities=17% Similarity=0.165 Sum_probs=104.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~~ 889 (1269)
+++|+++++.+|||+|||++++..+. .+++++|++|||+|+.|++++++++ +.++...+|+....++..
T Consensus 55 i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 134 (394)
T 1fuu_A 55 IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 134 (394)
T ss_dssp HHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHH
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHh
Confidence 46789999999999999998743332 2679999999999999999998764 456777777754322211
Q ss_pred C-CCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHH-HH
Q psy12699 890 E-KPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM-MT 959 (1269)
Q Consensus 890 ~-~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~-~~ 959 (1269)
. .+++|+|+|++.+. .+.+++++|+||||++.+.++...+..++..++.....+..++++.+....+. ..
T Consensus 135 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 214 (394)
T 1fuu_A 135 GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF 214 (394)
T ss_dssp HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHH
T ss_pred hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHh
Confidence 1 15799999988542 25689999999999998877777777777777665555566666655444443 33
Q ss_pred cCCceEEEecccCCccc-----c-----cc---c-cccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCC
Q psy12699 960 TNEDVEVYKYKRLTELQ-----I-----ED---S-AVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLP 1024 (1269)
Q Consensus 960 ~~~~~~v~~~~r~~~l~-----~-----~~---~-~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~ 1024 (1269)
...+..+.......... + .. . ....++....+.++||+ +++.++.+++.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~------------- 281 (394)
T 1fuu_A 215 MRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN------------- 281 (394)
T ss_dssp CCSCEEEEECC---------------------------------------------------------------------
T ss_pred cCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHH-------------
Confidence 44444432211110000 0 00 0 00011112223444444 55555555544433
Q ss_pred hhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccc
Q psy12699 1025 PTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1104 (1269)
Q Consensus 1025 ~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~ 1104 (1269)
.|+.+..+||++++++|+++++.|+ +|+.+|||||+++++
T Consensus 282 --------------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~~~~~ 321 (394)
T 1fuu_A 282 --------------------------------------DKFTVSAIYSDLPQQERDTIMKEFR--SGSSRILISTDLLAR 321 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------cCCeEEEeeCCCCHHHHHHHHHHHH--CCCCcEEEECChhhc
Confidence 2344788899999999999999999 899999999999999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|+|+ ++++||+++. |.+..+|+||+||+||.|++|.++.+..+.
T Consensus 322 Gldi~~~~~Vi~~~~--------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 366 (394)
T 1fuu_A 322 GIDVQQVSLVINYDL--------------PANKENYIHRIGRGGRFGRKGVAINFVTNE 366 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCcccCCEEEEeCC--------------CCCHHHHHHHcCcccCCCCCceEEEEEchh
Confidence 9999 9999999998 888999999999999999999997666555
No 23
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.2e-29 Score=345.14 Aligned_cols=310 Identities=16% Similarity=0.148 Sum_probs=208.2
Q ss_pred cCCceEEeccCCCCchHHHHHHHh----c--CCcEEEEcchHHHHHHHHHHHhc-----cCCCceeeecceeeeccCCCC
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERFL----S--AESGVYCGPLKMLATEVFKKSND-----RGTPCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l~----~--~~~~lil~Ptr~La~Qi~~~l~~-----~g~~v~~~~G~~~~~~~~~~~ 891 (1269)
.++|++++||||||||++|..++. + +.+++|++|+|+||+|+++++++ .|.+++..+|+...... ...
T Consensus 941 ~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~-~~~ 1019 (1724)
T 4f92_B 941 SDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK-LLG 1019 (1724)
T ss_dssp CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH-HHH
T ss_pred CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh-hcC
Confidence 468899999999999999943332 2 67899999999999999988853 45688889997543211 122
Q ss_pred CCCEEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhccC------cceEEEEeecCChHHHHH
Q psy12699 892 PANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM------AKEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~------~~~~~l~~s~~~~~~~~~ 955 (1269)
+++|+|||||.++ .+++++++|+||+|+++| .||..++..+..+. .+...+++..+..++.++
T Consensus 1020 ~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~d 1098 (1724)
T 4f92_B 1020 KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKD 1098 (1724)
T ss_dssp HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHH
T ss_pred CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHH
Confidence 6899999999543 156899999999999976 68998877664431 122222222222233555
Q ss_pred HHHHcCC---c-eEEEecccCCccccccccc-----------------cccCC-cCCCCEEEEe-cHHhHHHHHHHHHhc
Q psy12699 956 IMMTTNE---D-VEVYKYKRLTELQIEDSAV-----------------GSLDN-IQPGDCIVCF-SKNDVYTVSRGIESR 1012 (1269)
Q Consensus 956 l~~~~~~---~-~~v~~~~r~~~l~~~~~~~-----------------~~l~~-~~~g~~iv~~-s~~~~~~l~~~L~~~ 1012 (1269)
++.+.+. . ..+....|++|+...-... ..+.. ...+.++||+ +++.|+..+..|...
T Consensus 1099 la~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~ 1178 (1724)
T 4f92_B 1099 VAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTT 1178 (1724)
T ss_dssp HHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHH
Confidence 6555432 1 2345566777765321110 00111 1345788877 999999998877543
Q ss_pred CC----ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccC
Q psy12699 1013 GT----EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFND 1088 (1269)
Q Consensus 1013 ~~----~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~ 1088 (1269)
.. ....+ ....+....... ...+..+..++..| |++|||+|++++|+.+++.|+
T Consensus 1179 ~~~~~~~~~~~--~~~~~~l~~~l~-----------------~~~d~~L~~~l~~G--Ia~hHagL~~~~R~~VE~lF~- 1236 (1724)
T 4f92_B 1179 CAADIQRQRFL--HCTEKDLIPYLE-----------------KLSDSTLKETLLNG--VGYLHEGLSPMERRLVEQLFS- 1236 (1724)
T ss_dssp HHHTTCTTTTB--CSCHHHHHHHHT-----------------TCCCHHHHHHHHTT--EEEECTTSCHHHHHHHHHHHH-
T ss_pred Hhhccchhhhh--cccHHHHHHHHh-----------------hcccHHHHHHHhCC--EEEECCCCCHHHHHHHHHHHH-
Confidence 11 00000 011111111110 00122334455666 899999999999999999999
Q ss_pred CCCCeeEEEEcCccccccccCceEEEEcCCCCCCcccCCcc-ccccCCHhHHHHHhcccCCCCC--ccccccCCCC
Q psy12699 1089 PDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGER-EIDLISVSAALQIAGRAGRFNT--HFEKLAGSHP 1161 (1269)
Q Consensus 1089 ~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~-~~~p~s~~~y~QR~GRaGR~G~--~g~~~~~~~p 1161 (1269)
+|.++|||||+++++|||++.+.||..+..+|+ |.. ...|.+..+|.||+|||||.|. .|.++....+
T Consensus 1237 -~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~d----g~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~ 1307 (1724)
T 4f92_B 1237 -SGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYN----GKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307 (1724)
T ss_dssp -HTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEE----TTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEG
T ss_pred -CCCCeEEEEChHHHcCCCCCccEEEEecCcccc----CcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecc
Confidence 999999999999999999988888888876665 332 2568999999999999999997 5777554433
No 24
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=8.5e-29 Score=304.79 Aligned_cols=245 Identities=18% Similarity=0.090 Sum_probs=164.4
Q ss_pred CCcEEEEcchHHHHHHHHHHHh-ccCCCceeeecceeeeccCCCCCCCEEEEcccccc-----CCCCeeEEEEecccccc
Q psy12699 848 AESGVYCGPLKMLATEVFKKSN-DRGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-----VNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~-~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-----~l~~~~~lViDEah~~~ 921 (1269)
+.+++|++|||+||.|+++++. .++.+++..+|+... ..+.+|+|+||+.+. .+.+++++||||||++
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~-----~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l- 330 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI-----TTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHST- 330 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE-----CCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCC-
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec-----cCCCCEEEECcHHHHhCCCcccCcccEEEEccchhc-
Confidence 5699999999999999999985 467888888888553 336899999998442 2668999999999887
Q ss_pred cCCchhHHHHHHhccCcce--EEEEeecCChHHHHHHHHHcCCceE-EEecccCCccccccccccccCCcCCCCEEEEe-
Q psy12699 922 DITRGWAWTRALLGLMAKE--IHVCGEAGAVDLVKAIMMTTNEDVE-VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF- 997 (1269)
Q Consensus 922 d~~rg~~~~~~ll~l~~~~--~~l~~s~~~~~~~~~l~~~~~~~~~-v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~- 997 (1269)
|.++...+..++..++... ..+..++++.+.+. ....... +... ......+.... ..++..+.++++||+
T Consensus 331 ~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~----~~~p~i~~v~~~-~~~~i~~~~~~-~~l~~~~~~~vLVFv~ 404 (666)
T 3o8b_A 331 DSTTILGIGTVLDQAETAGARLVVLATATPPGSVT----VPHPNIEEVALS-NTGEIPFYGKA-IPIEAIRGGRHLIFCH 404 (666)
T ss_dssp SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC----CCCTTEEEEECB-SCSSEEETTEE-ECGGGSSSSEEEEECS
T ss_pred CccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc----cCCcceEEEeec-ccchhHHHHhh-hhhhhccCCcEEEEeC
Confidence 4445445555555554332 23434555543111 1111111 1110 01111111111 113344667888888
Q ss_pred cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHH
Q psy12699 998 SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPT 1077 (1269)
Q Consensus 998 s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~ 1077 (1269)
++++++++++.|++.+.+ +..+||+|+++
T Consensus 405 Tr~~ae~la~~L~~~g~~---------------------------------------------------v~~lHG~l~q~ 433 (666)
T 3o8b_A 405 SKKKCDELAAKLSGLGIN---------------------------------------------------AVAYYRGLDVS 433 (666)
T ss_dssp CHHHHHHHHHHHHTTTCC---------------------------------------------------EEEECTTSCGG
T ss_pred CHHHHHHHHHHHHhCCCc---------------------------------------------------EEEecCCCCHH
Confidence 999999999999775543 67788888877
Q ss_pred hHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCC-----CCccc-CCcc-ccccCCHhHHHHHhcccCCCC
Q psy12699 1078 TKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIK-----PSLNE-KGER-EIDLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1078 eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k-----~~~~~-~G~~-~~~p~s~~~y~QR~GRaGR~G 1150 (1269)
+ |+ ++..+||||||+++||||+++++||+++..+ ||||+ .|.. ...|.+.++|+||+||||| |
T Consensus 434 e-------r~--~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g 503 (666)
T 3o8b_A 434 V-------IP--TIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G 503 (666)
T ss_dssp G-------SC--SSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S
T ss_pred H-------HH--hCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C
Confidence 5 33 4556999999999999999999999877433 22333 1211 1359999999999999999 9
Q ss_pred CccccccCCCCccccc
Q psy12699 1151 THFEKLAGSHPALNEK 1166 (1269)
Q Consensus 1151 ~~g~~~~~~~p~~~~~ 1166 (1269)
++|. +.+..+...+.
T Consensus 504 ~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 504 RRGI-YRFVTPGERPS 518 (666)
T ss_dssp SCEE-EEESCCCCBCS
T ss_pred CCCE-EEEEecchhhc
Confidence 9998 66666664433
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=3.5e-28 Score=317.72 Aligned_cols=312 Identities=25% Similarity=0.266 Sum_probs=206.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhcc--CCCceeeecceeeeccCCCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDR--GTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~--g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
+++|+++++++|||||||++++..+ ..+++++|++|||+|+.|+++++++. +.+++.++|+... +.+.+
T Consensus 51 il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----~~~~~ 125 (997)
T 4a4z_A 51 LEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----NPDAN 125 (997)
T ss_dssp HHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----CTTSS
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----CCCCC
Confidence 4778999999999999998873322 34788999999999999999999875 5588999998664 23589
Q ss_pred EEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh--H-HHHHHHHHcCCc
Q psy12699 895 HVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV--D-LVKAIMMTTNED 963 (1269)
Q Consensus 895 Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~--~-~~~~l~~~~~~~ 963 (1269)
|+|+|++.+. .+.+++++||||||++.|.+++..|..++..++.....+..++|.. . +.+.+......+
T Consensus 126 IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~ 205 (997)
T 4a4z_A 126 CLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKN 205 (997)
T ss_dssp EEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCC
T ss_pred EEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCc
Confidence 9999998542 3679999999999999999999999999988876655555555543 2 222222222223
Q ss_pred eE-EEecccCCcccccccc-------------------------------------------------------------
Q psy12699 964 VE-VYKYKRLTELQIEDSA------------------------------------------------------------- 981 (1269)
Q Consensus 964 ~~-v~~~~r~~~l~~~~~~------------------------------------------------------------- 981 (1269)
+. +....|+.|+......
T Consensus 206 ~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 206 IYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp EEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred eEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 33 3344444444311000
Q ss_pred ------------------------------------------ccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEE
Q psy12699 982 ------------------------------------------VGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAV 1018 (1269)
Q Consensus 982 ------------------------------------------~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~ 1018 (1269)
...+.....+.++||+ +++.|+.+++.|.+.+..
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~--- 362 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFC--- 362 (997)
T ss_dssp -------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCC---
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCC---
Confidence 0000001223567766 888888888888664432
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhh-hccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEE
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDA-IGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMV 1097 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~-~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLV 1097 (1269)
..+++......+.+.. ..+...+. ..+...+..++..| +.+|||+|++.+|+.+++.|+ +|.++|||
T Consensus 363 -----~~~e~~~i~~~~~~~~---~~l~~~d~~l~~~~~l~~~l~~g--i~~~H~gl~~~~R~~v~~~F~--~G~~kVLv 430 (997)
T 4a4z_A 363 -----NNKEKSQIHMFIEKSI---TRLKKEDRDLPQILKTRSLLERG--IAVHHGGLLPIVKELIEILFS--KGFIKVLF 430 (997)
T ss_dssp -----CHHHHHHHHHHHHHHH---TTSCHHHHTCHHHHHHHHHHTTT--EEEECTTSCHHHHHHHHHHHH--TTCCSEEE
T ss_pred -----CHHHHHHHHHHHHHHH---HhcchhhhcchhHHHHHHHhhcC--eeeecCCCCHHHHHHHHHHHH--CCCCcEEE
Confidence 1111110000000000 00000000 00001122334445 899999999999999999999 99999999
Q ss_pred EcCccccccccCceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCC--cccccc
Q psy12699 1098 ATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNT--HFEKLA 1157 (1269)
Q Consensus 1098 aTdv~~~GIDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~--~g~~~~ 1157 (1269)
||+++++|||++-++||+++..+++ |. ...|.|..+|+||+|||||.|. .|.++.
T Consensus 431 AT~~~a~GIDiP~~~VVi~~~~k~d----g~-~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 431 ATETFAMGLNLPTRTVIFSSIRKHD----GN-GLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp ECTHHHHSCCCCCSEEEESCSEEEE----TT-EEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred EchHhhCCCCCCCceEEEecccccc----Cc-cCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 9999999999944889998887765 32 2358899999999999999994 455533
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=1e-28 Score=316.88 Aligned_cols=310 Identities=21% Similarity=0.201 Sum_probs=200.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----h-cCCcEEEEcchHHHHHHHHHHHhc---cCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----L-SAESGVYCGPLKMLATEVFKKSND---RGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~-~~~~~lil~Ptr~La~Qi~~~l~~---~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+.+|+|+++++|||||||+++...+ . .+++++|++|+|+||.|+++++++ +|.+++..+|+...... ....
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~~~~ 114 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE-WLGK 114 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG-GGGG
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc-ccCC
Confidence 4567777777888888877763222 2 478999999999999999999864 57789999997544222 1237
Q ss_pred CCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCce
Q psy12699 893 ANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDV 964 (1269)
Q Consensus 893 ~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~ 964 (1269)
++|+|+|||++. .+++++++|+||+|++.+.+|+..++.++..+..+...+..+++..+ .+++....+.+
T Consensus 115 ~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~- 192 (720)
T 2zj8_A 115 YDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAE- 192 (720)
T ss_dssp CSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEE-
T ss_pred CCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCc-
Confidence 899999998553 27799999999999999889999998887666533333333333321 34444444321
Q ss_pred EEEecccCCccccc----------c-------ccccccC-Cc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCC
Q psy12699 965 EVYKYKRLTELQIE----------D-------SAVGSLD-NI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLP 1024 (1269)
Q Consensus 965 ~v~~~~r~~~l~~~----------~-------~~~~~l~-~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~ 1024 (1269)
.+....|+.++... + .....+. .+ +.++++||+ ++++++.+++.|.+.... .+.
T Consensus 193 ~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~ 266 (720)
T 2zj8_A 193 LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKS------LLT 266 (720)
T ss_dssp EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC
T ss_pred ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHH------hcC
Confidence 12222333332210 0 0000000 01 346888888 999999999999764221 011
Q ss_pred hhhH--HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcc
Q psy12699 1025 PTTK--LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAI 1102 (1269)
Q Consensus 1025 ~~~r--~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~ 1102 (1269)
+..+ ......... .. .....+......| +.+|||+|++++|+.+++.|+ +|.++|||||+++
T Consensus 267 ~~~~~~~~~~~~~i~--~~----------~~~~~l~~~~~~~--v~~~h~~l~~~~R~~v~~~f~--~g~~~vlvaT~~l 330 (720)
T 2zj8_A 267 KPEIRALNELADSLE--EN----------PTNEKLAKAIRGG--VAFHHAGLGRDERVLVEENFR--KGIIKAVVATPTL 330 (720)
T ss_dssp HHHHHHHHHHHHTSC--SC----------HHHHHHHHHHTTT--EEEECTTSCHHHHHHHHHHHH--TTSSCEEEECSTT
T ss_pred hhhHHHHHHHHHHHh--cc----------cchHHHHHHHhcC--eeeecCCCCHHHHHHHHHHHH--CCCCeEEEECcHh
Confidence 1111 111100000 00 0000122233334 899999999999999999999 9999999999999
Q ss_pred cccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCC--CccccccCCCC
Q psy12699 1103 GMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFN--THFEKLAGSHP 1161 (1269)
Q Consensus 1103 ~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G--~~g~~~~~~~p 1161 (1269)
++|||+ ++++||+ +..+|+ ..| ..|.+..+|.||+|||||.| ..|.|+....+
T Consensus 331 ~~Gvdip~~~~VI~-~~~~yd--~~g---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 386 (720)
T 2zj8_A 331 SAGINTPAFRVIIR-DIWRYS--DFG---MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS 386 (720)
T ss_dssp GGGCCCCBSEEEEC-CSEECC--SSS---CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS
T ss_pred hccCCCCceEEEEc-CCeeec--CCC---CccCCHHHHHHHHhhcCCCCCCCCceEEEEecC
Confidence 999999 8888887 222221 112 24899999999999999998 46777544433
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.1e-29 Score=307.29 Aligned_cols=275 Identities=19% Similarity=0.162 Sum_probs=157.9
Q ss_pred CceEEeccCCCCchHHHHHHHh----c---CCcEEEEcchHHHHHHHHHHHhccCCC----ceeeecceeeeccCCCCCC
Q psy12699 825 PLKIHAGPTNSGKTYHALERFL----S---AESGVYCGPLKMLATEVFKKSNDRGTP----CDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l~----~---~~~~lil~Ptr~La~Qi~~~l~~~g~~----v~~~~G~~~~~~~~~~~~~ 893 (1269)
+++++++|||||||++++..+. . +++++|++|+++|+.|+++++++++.. +....++... ......+
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 236 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVP--KGAKIDA 236 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------CCCC
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccc--ccccCCC
Confidence 8899999999999988743332 2 458999999999999999999876542 2222333221 1123378
Q ss_pred CEEEEcccccc--------CCCCeeEEEEeccccccc-CCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHc-CCc
Q psy12699 894 NHVACTVEMTS--------VNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTT-NED 963 (1269)
Q Consensus 894 ~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~-~~~ 963 (1269)
+|+|+|++.+. .+.+++++|+||||++.+ .++...+..++..++.....+..++++.+..+.+.... +..
T Consensus 237 ~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 316 (508)
T 3fho_A 237 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNA 316 (508)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTC
T ss_pred CEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCC
Confidence 99999988433 277899999999999976 45566666666666655555556666655555555443 222
Q ss_pred eEEEecccCCcccccc--------------ccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhH
Q psy12699 964 VEVYKYKRLTELQIED--------------SAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTK 1028 (1269)
Q Consensus 964 ~~v~~~~r~~~l~~~~--------------~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r 1028 (1269)
..+....+........ .....+.....+.++||+ +++.++.+++.|.+
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~----------------- 379 (508)
T 3fho_A 317 NEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTA----------------- 379 (508)
T ss_dssp EEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTT-----------------
T ss_pred eEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh-----------------
Confidence 2221111100000000 000001111223333333 34444444433322
Q ss_pred HHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc
Q psy12699 1029 LAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL 1108 (1269)
Q Consensus 1029 ~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi 1108 (1269)
.|+.+..+||++++++|+++++.|+ +|+.+|||||+++++|+|+
T Consensus 380 ----------------------------------~~~~v~~~hg~~~~~~R~~il~~f~--~g~~~VLVaT~~l~~GiDi 423 (508)
T 3fho_A 380 ----------------------------------DGHTVACLTGNLEGAQRDAIMDSFR--VGTSKVLVTTNVIARGIDV 423 (508)
T ss_dssp ----------------------------------TTCCCCEEC-----CTTGGGTHHHH--SSSCCCCEECC-----CCC
T ss_pred ----------------------------------CCCcEEEEeCCCCHHHHHHHHHHHH--CCCCeEEEeCChhhcCCCc
Confidence 3445889999999999999999999 9999999999999999999
Q ss_pred -CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1109 -SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1109 -~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
++++||+++.+... + ...+..+|+||+||+||.|++|.++.+..+.
T Consensus 424 p~v~~VI~~~~p~~~----~----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 424 SQVNLVVNYDMPLDQ----A----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp TTCCEEEC----CC-------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred cCCCEEEEECCCCcc----c----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 99999999983321 0 0267899999999999999999986655443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=6.1e-28 Score=289.86 Aligned_cols=263 Identities=14% Similarity=0.130 Sum_probs=175.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhcc---CCCceeeecceeeecc---C--
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDR---GTPCDLITGEEKKFIQ---G-- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~---g~~v~~~~G~~~~~~~---~-- 888 (1269)
+++|+|+++++|||||||++++..+ ..+++++|++|||+|+.|++++++++ +.++..++|+....+. .
T Consensus 33 i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 112 (414)
T 3oiy_A 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKS 112 (414)
T ss_dssp HTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHH
Confidence 3678899999999999998774332 24789999999999999999999884 6688888888654111 1
Q ss_pred -CCCCCCEEEEcccccc------CCCCeeEEEEeccccccc-----------CCchhH-HHHHHhccC-----------c
Q psy12699 889 -EEKPANHVACTVEMTS------VNIPYEVAVIDEIQMMRD-----------ITRGWA-WTRALLGLM-----------A 938 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~------~l~~~~~lViDEah~~~d-----------~~rg~~-~~~~ll~l~-----------~ 938 (1269)
....++|+|+||+.+. .+.+++++|+||||++.+ .++... +..++..++ .
T Consensus 113 l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 192 (414)
T 3oiy_A 113 FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 192 (414)
T ss_dssp HHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCC
T ss_pred hhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCC
Confidence 1224899999999552 267999999999998753 333334 444444332 3
Q ss_pred ceEEEEeecC-Ch-----HHHHHHHHHc-CCceE----EEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHH
Q psy12699 939 KEIHVCGEAG-AV-----DLVKAIMMTT-NEDVE----VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVS 1006 (1269)
Q Consensus 939 ~~~~l~~s~~-~~-----~~~~~l~~~~-~~~~~----v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~ 1006 (1269)
....+..+++ .. ...+.+.... ..... +....... .........+.. .++.++||+ +++.++.++
T Consensus 193 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~ 269 (414)
T 3oiy_A 193 PGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS--RSKEKLVELLEI-FRDGILIFAQTEEEGKELY 269 (414)
T ss_dssp CCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS--CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHH
T ss_pred CceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc--CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHH
Confidence 4445555555 22 1222222110 00000 00000000 000001111122 235677776 888888888
Q ss_pred HHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeE-EEcCCCCHHhHHHHhhh
Q psy12699 1007 RGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVA-VIYGSLPPTTKLAQASK 1085 (1269)
Q Consensus 1007 ~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~-~~Hg~l~~~eR~~v~~~ 1085 (1269)
+.|.+.+.+ +. .+||+ +|+ ++.
T Consensus 270 ~~L~~~~~~---------------------------------------------------~~~~~h~~----~r~--~~~ 292 (414)
T 3oiy_A 270 EYLKRFKFN---------------------------------------------------VGETWSEF----EKN--FED 292 (414)
T ss_dssp HHHHHTTCC---------------------------------------------------EEESSSCH----HHH--HHH
T ss_pred HHHHHcCCc---------------------------------------------------eehhhcCc----chH--HHH
Confidence 888765544 44 56774 344 899
Q ss_pred ccCCCCCeeEEEE----cCcccccccc-C-ceEEEEcCCCCCCcccCCcccccc--CCHhHHHHHhcccCCCC----Ccc
Q psy12699 1086 FNDPDNPCKVMVA----TDAIGMGLNL-S-IRRVIFYSLIKPSLNEKGEREIDL--ISVSAALQIAGRAGRFN----THF 1153 (1269)
Q Consensus 1086 F~~~~g~~~VLVa----Tdv~~~GIDi-~-v~~VI~~~~~k~~~~~~G~~~~~p--~s~~~y~QR~GRaGR~G----~~g 1153 (1269)
|+ +|+++|||| |+++++|+|+ + +++||++|. | .+..+|+||+|||||.| ++|
T Consensus 293 f~--~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~--------------p~~~~~~~y~qr~GR~gR~g~~~~~~g 356 (414)
T 3oiy_A 293 FK--VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT--------------PSGPDVYTYIQASGRSSRILNGVLVKG 356 (414)
T ss_dssp HH--TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESC--------------CTTTCHHHHHHHHGGGCCEETTEECCE
T ss_pred Hh--CCCCeEEEEecCcCchhhccCccccccCEEEEECC--------------CCCCCHHHHHHHhCccccCCCCCCcce
Confidence 99 999999999 9999999999 8 999999998 7 78999999999999988 478
Q ss_pred ccccCC
Q psy12699 1154 EKLAGS 1159 (1269)
Q Consensus 1154 ~~~~~~ 1159 (1269)
.++...
T Consensus 357 ~~i~~~ 362 (414)
T 3oiy_A 357 VSVIFE 362 (414)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 886655
No 29
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=3.2e-27 Score=313.07 Aligned_cols=292 Identities=14% Similarity=0.164 Sum_probs=185.1
Q ss_pred ceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC------CCC
Q psy12699 826 LKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG------EEK 891 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~------~~~ 891 (1269)
|+++++|||+|||.+++.+ ...+++++|++||++||.|+++++++. +.++..++|.....+.. ...
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 6677777777777665322 245789999999999999999998652 45677777653322211 123
Q ss_pred CCCEEEEcccccc---CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEe
Q psy12699 892 PANHVACTVEMTS---VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYK 968 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~---~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~ 968 (1269)
..+|+|+|++.+. .+.+++++|+||+|+++. .....+..+......+..++|+.+....+......+..+..
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~ 780 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 780 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC
T ss_pred CCCEEEECHHHHhCCccccccceEEEechHhcCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe
Confidence 6899999998654 378999999999999743 44445555544444555566655444333322222222111
Q ss_pred cccCCccccccc--------ccc-ccCCc-CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCC
Q psy12699 969 YKRLTELQIEDS--------AVG-SLDNI-QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFND 1037 (1269)
Q Consensus 969 ~~r~~~l~~~~~--------~~~-~l~~~-~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~ 1037 (1269)
............ ... .+..+ ..+++++|+ ++++++.+++.|++..
T Consensus 781 ~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~------------------------ 836 (1151)
T 2eyq_A 781 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV------------------------ 836 (1151)
T ss_dssp CCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC------------------------
T ss_pred cCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC------------------------
Confidence 100000000000 000 00111 123344444 4445555555544321
Q ss_pred CCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEc
Q psy12699 1038 PDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFY 1116 (1269)
Q Consensus 1038 ~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~ 1116 (1269)
.+..+..+||+|++++|++++++|+ +|+.+|||||+++++|+|+ ++++||++
T Consensus 837 -------------------------p~~~v~~lhg~~~~~eR~~il~~F~--~g~~~VLVaT~v~e~GiDip~v~~VIi~ 889 (1151)
T 2eyq_A 837 -------------------------PEARIAIGHGQMRERELERVMNDFH--HQRFNVLVCTTIIETGIDIPTANTIIIE 889 (1151)
T ss_dssp -------------------------TTSCEEECCSSCCHHHHHHHHHHHH--TTSCCEEEESSTTGGGSCCTTEEEEEET
T ss_pred -------------------------CCCeEEEEeCCCCHHHHHHHHHHHH--cCCCcEEEECCcceeeecccCCcEEEEe
Confidence 1234889999999999999999999 9999999999999999999 89999998
Q ss_pred CCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc--ccccccchhhhh----hhhhHHHhhccC
Q psy12699 1117 SLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA--LNEKGEREIDLI----SVSAALQIAGRA 1186 (1269)
Q Consensus 1117 ~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~--~~~~~~~~~~~~----~~~~~~qia~~~ 1186 (1269)
+.. +.+..+|+||+||+||.|++|+|+....+. +.+...++.+.+ ++++++++|.++
T Consensus 890 ~~~-------------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l~~~~~~rl~~i~~~~~lg~gf~ia~~d 952 (1151)
T 2eyq_A 890 RAD-------------HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 952 (1151)
T ss_dssp TTT-------------SSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCSBSHHHHHHHHH
T ss_pred CCC-------------CCCHHHHHHHHhccCcCCCceEEEEEECCccccCHHHHHHHHHHHHhhccCCcchHHHHH
Confidence 862 346889999999999999999996655443 222233333333 355577666654
No 30
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=1.2e-27 Score=298.08 Aligned_cols=272 Identities=15% Similarity=0.049 Sum_probs=168.0
Q ss_pred ccCCceEEeccCCCCchHHHHH----HH-hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEE
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALE----RF-LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHV 896 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~----~l-~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Iv 896 (1269)
++|+|++++||||||||++++. .+ ..+.+++|++||||||.|++++++.. .+....+. .+.....+..+.
T Consensus 184 ~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~--~v~~~~~~---l~~~~tp~~~i~ 258 (618)
T 2whx_A 184 RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPA---VKSDHTGREIVD 258 (618)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTT---SSCCCCSSSCEE
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC--ceeEeccc---ceeccCCCceEE
Confidence 3444444444444444444311 11 23679999999999999999999732 33321111 011112245566
Q ss_pred EEcccccc-------CCCCeeEEEEecccccccCCchhHHHHHHhccC-cceEEEEeecCChHHHHHHHHHcCCceEEEe
Q psy12699 897 ACTVEMTS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM-AKEIHVCGEAGAVDLVKAIMMTTNEDVEVYK 968 (1269)
Q Consensus 897 v~T~e~~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~-~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~ 968 (1269)
++|.+.+. .+.+++++|+||||++ +.++...+..++..++ .+...+..++++.+....+.......+.+..
T Consensus 259 ~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~ 337 (618)
T 2whx_A 259 LMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIER 337 (618)
T ss_dssp EEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEEC
T ss_pred EEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeecc
Confidence 77765332 3789999999999999 5555555555554443 3344555556554333332221111111211
Q ss_pred cccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhh
Q psy12699 969 YKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1047 (1269)
Q Consensus 969 ~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~ 1047 (1269)
. .+..........+.. ..++++||+ ++++++.+++.|++.+.+
T Consensus 338 ~---~~~~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~-------------------------------- 381 (618)
T 2whx_A 338 E---IPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKR-------------------------------- 381 (618)
T ss_dssp C---CCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCC--------------------------------
T ss_pred c---CCHHHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCc--------------------------------
Confidence 1 110000011111111 356788888 999999999999876554
Q ss_pred hhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCC-c--c
Q psy12699 1048 TDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPS-L--N 1124 (1269)
Q Consensus 1048 t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~-~--~ 1124 (1269)
+..+|| ++|+++++.|+ +|+.+||||||++++|||+++++||+++..+.. + +
T Consensus 382 -------------------v~~lhg----~~R~~~l~~F~--~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 382 -------------------VIQLSR----KTFDTEYPKTK--LTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp -------------------EEEECT----TTHHHHTTHHH--HSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECS
T ss_pred -------------------EEEECh----HHHHHHHHhhc--CCCcEEEEECcHHHcCcccCceEEEECcceecceeccc
Confidence 556676 37788889999 999999999999999999999999998873321 0 0
Q ss_pred cCC---ccccccCCHhHHHHHhcccCCCCC-ccccccCCC
Q psy12699 1125 EKG---EREIDLISVSAALQIAGRAGRFNT-HFEKLAGSH 1160 (1269)
Q Consensus 1125 ~~G---~~~~~p~s~~~y~QR~GRaGR~G~-~g~~~~~~~ 1160 (1269)
..+ .....|.+.++|+||+|||||.|. +|.++.+..
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 001 001348999999999999999975 888866665
No 31
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=4.1e-27 Score=300.34 Aligned_cols=271 Identities=17% Similarity=0.143 Sum_probs=177.5
Q ss_pred CCcEEEEcchHHHHHHHHHHHh-ccCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccc
Q psy12699 848 AESGVYCGPLKMLATEVFKKSN-DRGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQM 919 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~-~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~ 919 (1269)
+.++++++|+|+|+.|+++++. .++.+++..+|+....+.......+|+++|++.+. .+.+++++|+||+|+
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 5679999999999999999884 46777776677544433333457899999987443 488999999999996
Q ss_pred -cccCCchhHHHHHHhcc-CcceEEEEeecCChHHHHHHHHHcCCceEEEecccCCccccc--c--------cccccc--
Q psy12699 920 -MRDITRGWAWTRALLGL-MAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIE--D--------SAVGSL-- 985 (1269)
Q Consensus 920 -~~d~~rg~~~~~~ll~l-~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~--~--------~~~~~l-- 985 (1269)
..|.+....+-+.+... +..++.+++++.+...+..+ .+....+....+..++... . .....+
T Consensus 220 R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~---~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~ 296 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY---FNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQ 296 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH---TTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH---hcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHH
Confidence 44422222222222232 22344444433343333333 3322223222222222211 0 001111
Q ss_pred --CCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccccccc
Q psy12699 986 --DNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIES 1062 (1269)
Q Consensus 986 --~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~ 1062 (1269)
.....++++||+ ++++++.+++.|.+.... .... ...
T Consensus 297 ~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~-------------l~~~---------------------------~~~ 336 (773)
T 2xau_A 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ-------------LVRE---------------------------EGC 336 (773)
T ss_dssp HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHH-------------HHHH---------------------------HCC
T ss_pred HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHh-------------hccc---------------------------ccC
Confidence 112467888888 999999999888642110 0000 011
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCC---CCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-ccc-CCccc--cccC
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDP---DNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNE-KGERE--IDLI 1134 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~---~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~-~G~~~--~~p~ 1134 (1269)
.++.+.++||+|++++|+++++.|+.+ +|.++||||||++++|||| +|++||++|..+.. ||+ .|... ..|.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~ 416 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC
Confidence 345689999999999999999999721 5899999999999999999 99999999997755 665 44332 5599
Q ss_pred CHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1135 SVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1135 s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|.++|+||+|||||. +.|.|+....+.
T Consensus 417 S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 417 SKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp CHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999 788886555443
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=3.1e-27 Score=284.52 Aligned_cols=264 Identities=17% Similarity=0.110 Sum_probs=157.2
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh-----cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCC
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL-----SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~-----~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
.+++|+|+++++|||||||++|+..++ .+.+++|++|||+||.|++++++.++. ...++...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v--~~~~~~~~----------- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV--KFHTQAFS----------- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE--EEESSCCC-----------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe--EEecccce-----------
Confidence 356778888888888888877633222 367999999999999999999985542 22111100
Q ss_pred EEEEcccccc----------------CCCCeeEEEEecccccccCCchhHHHHHHhcc-CcceEEEEeecCChHHHHHHH
Q psy12699 895 HVACTVEMTS----------------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGL-MAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 895 Ivv~T~e~~~----------------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
.++|++.+. .+.+++++|+||+|++ +..+..........+ ..+...++.++++.+....+.
T Consensus 71 -~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 71 -AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp -CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 244443111 2689999999999999 432222221111111 234445555666654333332
Q ss_pred HHcCCceEEEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccC
Q psy12699 958 MTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFN 1036 (1269)
Q Consensus 958 ~~~~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~ 1036 (1269)
.... +...... ..+..........+.. ..++++||+ ++++++.+++.|++.+.+
T Consensus 149 ~~~~-~~~~~~~--~~~~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~--------------------- 203 (440)
T 1yks_A 149 HSNG-EIEDVQT--DIPSEPWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKS--------------------- 203 (440)
T ss_dssp CCSS-CEEEEEC--CCCSSCCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC---------------------
T ss_pred hcCC-CeeEeee--ccChHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCC---------------------
Confidence 2111 1111111 1110000111111111 246788888 999999999998776544
Q ss_pred CCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEc
Q psy12699 1037 DPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFY 1116 (1269)
Q Consensus 1037 ~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~ 1116 (1269)
+..+|| ++|+++++.|+ +|+.+|||||+++++|||+++++||++
T Consensus 204 ------------------------------v~~lhg----~~R~~~~~~F~--~g~~~vLVaT~v~e~GiDipv~~VI~~ 247 (440)
T 1yks_A 204 ------------------------------VVVLNR----KTFEREYPTIK--QKKPDFILATDIAEMGANLCVERVLDC 247 (440)
T ss_dssp ------------------------------EEECCS----SSCC----------CCCSEEEESSSTTCCTTCCCSEEEEC
T ss_pred ------------------------------EEEecc----hhHHHHHhhhc--CCCceEEEECChhheeeccCceEEEeC
Confidence 666787 56888889999 999999999999999999999999987
Q ss_pred CCCCCC-cccCCc----cccccCCHhHHHHHhcccCCC-CCccccccCC
Q psy12699 1117 SLIKPS-LNEKGE----REIDLISVSAALQIAGRAGRF-NTHFEKLAGS 1159 (1269)
Q Consensus 1117 ~~~k~~-~~~~G~----~~~~p~s~~~y~QR~GRaGR~-G~~g~~~~~~ 1159 (1269)
+..+-. +...++ ..-.|.+.++|+||+|||||. |++|.|+.+.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 653311 000010 002389999999999999997 6899996664
No 33
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=8.4e-27 Score=282.03 Aligned_cols=245 Identities=15% Similarity=0.072 Sum_probs=151.8
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcccccc-------CCCCeeEEEEecccc
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTVEMTS-------VNIPYEVAVIDEIQM 919 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~~-------~l~~~~~lViDEah~ 919 (1269)
.+.+++|++|||+||.|+++++... .+....+... .....+..|.++|++.+. .+.+++++|+||||+
T Consensus 47 ~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~---~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 47 RRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPAVK---SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHF 121 (451)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTTCS---CCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTC
T ss_pred cCCcEEEECCCHHHHHHHHHHhcCc--eeeeeecccc---ccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCcc
Confidence 4689999999999999999999632 2322222111 011235678899977432 378999999999998
Q ss_pred cccCCchhHHHHHHhc-cCcceEEEEeecCChHHHHHHHHHcCCceEEEecccCCccccccccccccCCcCCCCEEEEe-
Q psy12699 920 MRDITRGWAWTRALLG-LMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF- 997 (1269)
Q Consensus 920 ~~d~~rg~~~~~~ll~-l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~- 997 (1269)
+ |............. ...+...+..++++.+....+. .+....+ ...+..+..........+.. ..++++||+
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~--~~~~~~~-~~~~~~p~~~~~~~~~~l~~-~~~~~lVF~~ 196 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFP--QSNSPIE-DIEREIPERSWNTGFDWITD-YQGKTVWFVP 196 (451)
T ss_dssp C-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC--CCSSCEE-EEECCCCSSCCSSSCHHHHH-CCSCEEEECS
T ss_pred C-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchhhh--cCCCceE-ecCccCCchhhHHHHHHHHh-CCCCEEEEcC
Confidence 8 43333333222211 2223344455555543211111 1111111 11122221100000111111 345788888
Q ss_pred cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHH
Q psy12699 998 SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPT 1077 (1269)
Q Consensus 998 s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~ 1077 (1269)
++++++.+++.|++.+.. +..+||++
T Consensus 197 s~~~a~~l~~~L~~~g~~---------------------------------------------------~~~lh~~~--- 222 (451)
T 2jlq_A 197 SIKAGNDIANCLRKSGKR---------------------------------------------------VIQLSRKT--- 222 (451)
T ss_dssp SHHHHHHHHHHHHTTTCC---------------------------------------------------EEEECTTT---
T ss_pred CHHHHHHHHHHHHHcCCe---------------------------------------------------EEECCHHH---
Confidence 999999999998776544 45566643
Q ss_pred hHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-cccCCccc--c---ccCCHhHHHHHhcccCCCC
Q psy12699 1078 TKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-LNEKGERE--I---DLISVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1078 eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~~~~G~~~--~---~p~s~~~y~QR~GRaGR~G 1150 (1269)
|+++++.|+ +|+.+||||||++++|||+ + ++|||+|..+.. |+..|... . .|.+.++|+||+|||||.|
T Consensus 223 -~~~~~~~f~--~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g 298 (451)
T 2jlq_A 223 -FDTEYPKTK--LTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP 298 (451)
T ss_dssp -HHHHGGGGG--SSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred -HHHHHHhhc--cCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC
Confidence 456779999 9999999999999999999 7 999999954322 22222222 1 6999999999999999999
Q ss_pred C-ccccccCC
Q psy12699 1151 T-HFEKLAGS 1159 (1269)
Q Consensus 1151 ~-~g~~~~~~ 1159 (1269)
+ +|.++.+.
T Consensus 299 ~~~g~~~~~~ 308 (451)
T 2jlq_A 299 AQEDDQYVFS 308 (451)
T ss_dssp TCCCEEEEEC
T ss_pred CCCccEEEEe
Confidence 8 77775554
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=6e-27 Score=296.61 Aligned_cols=283 Identities=16% Similarity=0.178 Sum_probs=167.2
Q ss_pred ceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC------CCC
Q psy12699 826 LKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG------EEK 891 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~------~~~ 891 (1269)
|+++++|||||||++++.. +..+.+++|++||++||.|++++++++ +.++..++|+....+.. ...
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g 470 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG 470 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC
Confidence 5566666666666655322 234889999999999999999998653 67889999986543321 223
Q ss_pred CCCEEEEcccccc---CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEEEe
Q psy12699 892 PANHVACTVEMTS---VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYK 968 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~---~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~ 968 (1269)
.++|+|+|++.+. .+.+++++|+||+|+++..++. .+.........+..++++.+....+......+..+..
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~-----~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~ 545 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQRE-----ALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID 545 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----C-----CCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC
T ss_pred CCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHH-----HHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeee
Confidence 5899999998653 4789999999999998654332 1222222233444555554433222221111111111
Q ss_pred cccCCccccccccccccCCcCCCCEEEEecHHhHHHHHHHHH---hcCCceEEEeCCCChhhHHHHhcccCCCCCCccch
Q psy12699 969 YKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTVSRGIE---SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1045 (1269)
Q Consensus 969 ~~r~~~l~~~~~~~~~l~~~~~g~~iv~~s~~~~~~l~~~L~---~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l 1045 (1269)
. .+.. ... + ............+.+.+. ..+.++.+++......+... ......+
T Consensus 546 ~-~p~~----r~~---i-------~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~--------~~~a~~l 602 (780)
T 1gm5_A 546 E-MPPG----RKE---V-------QTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN--------VKSAVEM 602 (780)
T ss_dssp C-CCSS----CCC---C-------EECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC----------------CHHHHH
T ss_pred c-cCCC----Ccc---e-------EEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh--------HHHHHHH
Confidence 0 0000 000 0 000011111222222332 22334433333222111000 0000000
Q ss_pred hhhhhhccCcccccccc---CCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCC
Q psy12699 1046 VATDAIGMGLNFRGIES---RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKP 1121 (1269)
Q Consensus 1046 ~~t~~~~~~~~~~~l~~---~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~ 1121 (1269)
...+.. .++.+..+||+|++++|++++++|+ +|+++|||||+++++|+|+ ++++||+++..+
T Consensus 603 -----------~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~--~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r- 668 (780)
T 1gm5_A 603 -----------YEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA--EGRYDILVSTTVIEVGIDVPRANVMVIENPER- 668 (780)
T ss_dssp -----------HHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT--TTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSS-
T ss_pred -----------HHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHH--CCCCeEEEECCCCCccccCCCCCEEEEeCCCC-
Confidence 001111 2566899999999999999999999 9999999999999999999 999999999833
Q ss_pred CcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCc
Q psy12699 1122 SLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1122 ~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~ 1162 (1269)
.+.++|+||+||+||.|++|+|+....|.
T Consensus 669 ------------~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 669 ------------FGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp ------------SCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred ------------CCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 35789999999999999999997776643
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.94 E-value=1.4e-26 Score=278.24 Aligned_cols=271 Identities=16% Similarity=0.100 Sum_probs=161.0
Q ss_pred CCceEEeccCCCCchHHHHHHH-----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEE
Q psy12699 824 GPLKIHAGPTNSGKTYHALERF-----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l-----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
|+++++++|||||||++|+.++ ..+.+++|++|||+||.|+++.+. +.++...+|.... ....+..+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~---~~~~~~~~~~~ 76 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS---ERTGNEIVDFM 76 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC------------CCCSEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc---cCCCCceEEEE
Confidence 4555555555555555542221 347799999999999999999987 5566666665221 11223456666
Q ss_pred cccccc-------CCCCeeEEEEecccccccCCchhHHHHHHhc--cCcceEEEEeecCChHHHHHHHHHcCCceEEEec
Q psy12699 899 TVEMTS-------VNIPYEVAVIDEIQMMRDITRGWAWTRALLG--LMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKY 969 (1269)
Q Consensus 899 T~e~~~-------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~--l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~ 969 (1269)
|.+.+. .+.+++++||||+|++. ....... ..+.. .......+..++++.+....+.........+..
T Consensus 77 ~~~~l~~~l~~~~~~~~l~~vViDEaH~~~-~~~~~~~-~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~i~~~~~- 153 (431)
T 2v6i_A 77 CHSTFTMKLLQGVRVPNYNLYIMDEAHFLD-PASVAAR-GYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEET- 153 (431)
T ss_dssp EHHHHHHHHHHTCCCCCCSEEEEESTTCCS-HHHHHHH-HHHHHHHHTTSCEEEEEESSCTTCCCSSCCCSSCCEEEEC-
T ss_pred chHHHHHHHhcCccccCCCEEEEeCCccCC-ccHHHHH-HHHHHHhhCCCCcEEEEeCCCCcchhhhcCCCCceeeccc-
Confidence 754321 27899999999999983 2111111 11211 123444555566665422222111111111110
Q ss_pred ccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhh
Q psy12699 970 KRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT 1048 (1269)
Q Consensus 970 ~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t 1048 (1269)
..+..........+.. ..++++||+ ++++++.+++.|++.+.+
T Consensus 154 --~~~~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~--------------------------------- 197 (431)
T 2v6i_A 154 --RIPDKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKK--------------------------------- 197 (431)
T ss_dssp --CCCSSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCC---------------------------------
T ss_pred --cCCHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCe---------------------------------
Confidence 0000000111111111 346788887 999999999988765433
Q ss_pred hhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCC-cccCC
Q psy12699 1049 DAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPS-LNEKG 1127 (1269)
Q Consensus 1049 ~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~-~~~~G 1127 (1269)
+..+||+ +|+++++.|+ +|+.+|||||+++++|+|+++++||+++..+.. ++..+
T Consensus 198 ------------------v~~lhg~----~r~~~~~~f~--~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~ 253 (431)
T 2v6i_A 198 ------------------VLYLNRK----TFESEYPKCK--SEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGR 253 (431)
T ss_dssp ------------------EEEESTT----THHHHTTHHH--HSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTE
T ss_pred ------------------EEEeCCc----cHHHHHHhhc--CCCCeEEEECchHHcCcccCCcEEEecCccccceecccc
Confidence 6778886 6788899999 999999999999999999999998887654421 11000
Q ss_pred c--cccccCCHhHHHHHhcccCCCCCc-cccccCCCCc
Q psy12699 1128 E--REIDLISVSAALQIAGRAGRFNTH-FEKLAGSHPA 1162 (1269)
Q Consensus 1128 ~--~~~~p~s~~~y~QR~GRaGR~G~~-g~~~~~~~p~ 1162 (1269)
. ..-.|.+.++|+||+||+||.|++ |.++.+..|.
T Consensus 254 ~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~~~ 291 (431)
T 2v6i_A 254 VSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGNV 291 (431)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECSCC
T ss_pred eeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcCCC
Confidence 0 002488999999999999999964 4555555443
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=1.6e-26 Score=288.32 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=79.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hc-----CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LS-----AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~-----~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~ 887 (1269)
+++|+|+++++|||+|||++++..+ .. +++++|++||++|+.|++++++++ +.++..++|+.....+
T Consensus 19 ~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 19 AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 98 (556)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----C
T ss_pred HHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchh
Confidence 4678999999999999999883332 22 678999999999999999998765 7788889998644322
Q ss_pred CCC--CCCCEEEEcccccc---------CCCCeeEEEEecccccccCC
Q psy12699 888 GEE--KPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 888 ~~~--~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~ 924 (1269)
... .+++|+|+||+.+. .+.+++++|+||||++.+.+
T Consensus 99 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 99 VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred HHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 111 25899999998543 46789999999999997654
No 37
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.93 E-value=1.4e-26 Score=280.52 Aligned_cols=273 Identities=16% Similarity=0.121 Sum_probs=159.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHH-----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF-----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANH 895 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l-----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~I 895 (1269)
+.+|+++++++|||||||++++..+ ..+.+++|++|||+||.|++++++ |..+....+.... ....+..+
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~---~~t~~~~i 92 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQR---EHQGNEIV 92 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC-----------CCCSE
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc--CceEeEEeccccc---CCCCCcEE
Confidence 3445666666666666666542221 247899999999999999999997 3333322222111 01223456
Q ss_pred EEEccccc-------cCCCCeeEEEEecccccccCCchhHH--HHHHhccCcceEEEEeecCChHHHHHHHHHcCCceEE
Q psy12699 896 VACTVEMT-------SVNIPYEVAVIDEIQMMRDITRGWAW--TRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEV 966 (1269)
Q Consensus 896 vv~T~e~~-------~~l~~~~~lViDEah~~~d~~rg~~~--~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v 966 (1269)
.++|.+.+ ..+.+++++||||||++ +......+ ...+... .+...++.++++...+..+... ..++..
T Consensus 93 ~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~~-~~~~~il~SAT~~~~~~~~~~~-~~pi~~ 169 (459)
T 2z83_A 93 DVMCHATLTHRLMSPNRVPNYNLFVMDEAHFT-DPASIAARGYIATKVEL-GEAAAIFMTATPPGTTDPFPDS-NAPIHD 169 (459)
T ss_dssp EEEEHHHHHHHHHSCC-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHHT-TSCEEEEECSSCTTCCCSSCCC-SSCEEE
T ss_pred EEEchHHHHHHhhccccccCCcEEEEECCccC-CchhhHHHHHHHHHhcc-CCccEEEEEcCCCcchhhhccC-CCCeEE
Confidence 77775533 24789999999999996 11111111 1111222 3334444555554322222111 112221
Q ss_pred EecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccch
Q psy12699 967 YKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1045 (1269)
Q Consensus 967 ~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l 1045 (1269)
. .+..+..........+.. ..++++||+ ++++++.+++.|++.+.+
T Consensus 170 ~--~~~~~~~~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~------------------------------ 216 (459)
T 2z83_A 170 L--QDEIPDRAWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKK------------------------------ 216 (459)
T ss_dssp E--ECCCCSSCCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC------------------------------
T ss_pred e--cccCCcchhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCc------------------------------
Confidence 1 111111100011111111 256788888 999999999999876554
Q ss_pred hhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC-c
Q psy12699 1046 VATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS-L 1123 (1269)
Q Consensus 1046 ~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~-~ 1123 (1269)
+..+||. +|+++++.|+ +|+.+||||||++++|||+ + ++||++|..+.. +
T Consensus 217 ---------------------v~~lh~~----~R~~~~~~f~--~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~ 268 (459)
T 2z83_A 217 ---------------------VIQLNRK----SYDTEYPKCK--NGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTI 268 (459)
T ss_dssp ---------------------EEEESTT----CCCCCGGGSS--SCCCSEEEESSCC---CCCSC-SEEEECCEECCEEE
T ss_pred ---------------------EEecCHH----HHHHHHhhcc--CCCceEEEECChHHhCeecCC-CEEEECCccccccc
Confidence 4556663 6667779999 9999999999999999999 7 999997744322 1
Q ss_pred ccCCccc-----cccCCHhHHHHHhcccCCCCC-ccccccCCCCc
Q psy12699 1124 NEKGERE-----IDLISVSAALQIAGRAGRFNT-HFEKLAGSHPA 1162 (1269)
Q Consensus 1124 ~~~G~~~-----~~p~s~~~y~QR~GRaGR~G~-~g~~~~~~~p~ 1162 (1269)
+..|... -.|.|.++|+||+|||||.|+ +|.++.+..+.
T Consensus 269 ~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 269 LEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 1111111 158999999999999999997 88886665554
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=1.6e-26 Score=288.15 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=50.0
Q ss_pred eeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHh
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIA 1143 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~ 1143 (1269)
....+||+|++++|+++++.|+ + |+++|||||+++++|||+ ++++||+||. |.++.+|+||+
T Consensus 427 ~~~~~~~~~~~~~R~~~~~~F~--~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~--------------p~s~~~~~Qr~ 490 (555)
T 3tbk_A 427 GRTNRATGMTLPAQKCVLEAFR--ASGDNNILIATSVADEGIDIAECNLVILYEY--------------VGNVIKMIQTR 490 (555)
T ss_dssp ---------------------------CCSEEEECCCTTCCEETTSCSEEEEESC--------------CSSCCCEECSS
T ss_pred CCcccccccCHHHHHHHHHHHh--cCCCeeEEEEcchhhcCCccccCCEEEEeCC--------------CCCHHHHHHhc
Confidence 3566799999999999999999 8 999999999999999999 9999999998 88899999999
Q ss_pred cccCCCCCccccccCCCCc
Q psy12699 1144 GRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1144 GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|| ||. ++|.++....+.
T Consensus 491 GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 491 GR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp CC-CTT-TSCEEEEEESCH
T ss_pred Cc-CcC-CCceEEEEEcCC
Confidence 99 998 788886665554
No 39
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.93 E-value=3.6e-26 Score=286.22 Aligned_cols=270 Identities=14% Similarity=0.064 Sum_probs=162.6
Q ss_pred cCCceEEeccCCCCchHHHHHHH-----hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERF-----LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l-----~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
+|+|+++++|||||||++|+..+ ..+.+++|++|||+||.|++++++.++. ...++... .....+.-+-.
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~i--~~~~~~l~---~v~tp~~ll~~ 314 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPV--RYLTPAVQ---REHSGNEIVDV 314 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCC--EECCC------CCCCSCCCEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCCe--eeeccccc---ccCCHHHHHHH
Confidence 57777777777777777663222 2367999999999999999999986643 22111110 00011122333
Q ss_pred Eccccc-------cCCCCeeEEEEecccccccCCchhHHHHHHhcc-CcceEEEEeecCChHHHHHHHHHcCCceEEEec
Q psy12699 898 CTVEMT-------SVNIPYEVAVIDEIQMMRDITRGWAWTRALLGL-MAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKY 969 (1269)
Q Consensus 898 ~T~e~~-------~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l-~~~~~~l~~s~~~~~~~~~l~~~~~~~~~v~~~ 969 (1269)
.+...+ ..+.+++++||||+|++ +.........+...+ ......++.++++.+.+..+.... .++. ..
T Consensus 315 l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~-~~i~--~v 390 (673)
T 2wv9_A 315 MCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDTN-SPVH--DV 390 (673)
T ss_dssp EEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCS-SCEE--EE
T ss_pred HHhhhhHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcccC-CceE--EE
Confidence 332211 13789999999999999 211111111111111 133445555565543332222111 1111 11
Q ss_pred ccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhh
Q psy12699 970 KRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT 1048 (1269)
Q Consensus 970 ~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t 1048 (1269)
....+..........+.. ..++++||+ ++++++.+++.|++.+.+
T Consensus 391 ~~~~~~~~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~--------------------------------- 436 (673)
T 2wv9_A 391 SSEIPDRAWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKR--------------------------------- 436 (673)
T ss_dssp ECCCCSSCCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCC---------------------------------
T ss_pred eeecCHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCe---------------------------------
Confidence 110110000111111111 356788888 999999999988765443
Q ss_pred hhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccCceEEEEcCCCCCC---ccc
Q psy12699 1049 DAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPS---LNE 1125 (1269)
Q Consensus 1049 ~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~v~~VI~~~~~k~~---~~~ 1125 (1269)
+..+|| ++|+++++.|+ +|+++|||||+++++|||+++++|||++..... |+.
T Consensus 437 ------------------v~~lHg----~eR~~v~~~F~--~g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da 492 (673)
T 2wv9_A 437 ------------------VIQLNR----KSYDTEYPKCK--NGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEG 492 (673)
T ss_dssp ------------------EEEECS----SSHHHHGGGGG--TCCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECST
T ss_pred ------------------EEEeCh----HHHHHHHHHHH--CCCceEEEECchhhcceeeCCcEEEECCCcccceeeecc
Confidence 677888 48889999999 999999999999999999999999998743210 111
Q ss_pred C---CccccccCCHhHHHHHhcccCCC-CCccccccCC
Q psy12699 1126 K---GEREIDLISVSAALQIAGRAGRF-NTHFEKLAGS 1159 (1269)
Q Consensus 1126 ~---G~~~~~p~s~~~y~QR~GRaGR~-G~~g~~~~~~ 1159 (1269)
. |.....|.+.++|+||+|||||. |++|.++++.
T Consensus 493 ~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 493 EGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp TCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred cccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 1 00012489999999999999999 7889986663
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=1.4e-25 Score=277.70 Aligned_cols=297 Identities=19% Similarity=0.110 Sum_probs=187.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+++|+ ++.++||+|||++|...+ +.++.++|++|||+||.|+++.+.. +|.++++++|+.....+....+
T Consensus 95 ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~~ 172 (844)
T 1tf5_A 95 LHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYA 172 (844)
T ss_dssp HHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHHH
T ss_pred HhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcC
Confidence 35677 999999999999983222 3578999999999999999987754 5789999999865433322336
Q ss_pred CCEEEEccccc------c---------CCCCeeEEEEecccccc-cCCch---------------hHHHHHHhccCc---
Q psy12699 893 ANHVACTVEMT------S---------VNIPYEVAVIDEIQMMR-DITRG---------------WAWTRALLGLMA--- 938 (1269)
Q Consensus 893 ~~Ivv~T~e~~------~---------~l~~~~~lViDEah~~~-d~~rg---------------~~~~~~ll~l~~--- 938 (1269)
++|+|+||..+ + .++++.++|+||||+|+ |+.+. .....++..++.
T Consensus 173 ~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~ 252 (844)
T 1tf5_A 173 ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKD 252 (844)
T ss_dssp SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSS
T ss_pred CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCccccc
Confidence 89999997633 1 25789999999999997 76532 344556666652
Q ss_pred ------ceEEE-----------------EeecCChHHHHHHHHH--------cCCceEEEe---------cccCC-----
Q psy12699 939 ------KEIHV-----------------CGEAGAVDLVKAIMMT--------TNEDVEVYK---------YKRLT----- 973 (1269)
Q Consensus 939 ------~~~~l-----------------~~s~~~~~~~~~l~~~--------~~~~~~v~~---------~~r~~----- 973 (1269)
++... +.+++...+...+... ...++.+.. ..|..
T Consensus 253 y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~ 332 (844)
T 1tf5_A 253 YTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRY 332 (844)
T ss_dssp BCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCC
T ss_pred ceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCcc
Confidence 23332 4445444333333210 011122110 00100
Q ss_pred --------------ccccccccccccC----------------------------------CcCC--------CCEEEEe
Q psy12699 974 --------------ELQIEDSAVGSLD----------------------------------NIQP--------GDCIVCF 997 (1269)
Q Consensus 974 --------------~l~~~~~~~~~l~----------------------------------~~~~--------g~~iv~~ 997 (1269)
.+.........+. .++. ..-+++.
T Consensus 333 sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~ 412 (844)
T 1tf5_A 333 SEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYR 412 (844)
T ss_dssp STTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEES
T ss_pred chhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEe
Confidence 0000000000000 0000 0112233
Q ss_pred -cHHhHHHHHHHHHh---cCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCC
Q psy12699 998 -SKNDVYTVSRGIES---RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGS 1073 (1269)
Q Consensus 998 -s~~~~~~l~~~L~~---~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~ 1073 (1269)
.+.....+.+.+.+ .+.++.+...+....+..... |...|+++.++||+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~---------------------------L~~~gi~~~vLhg~ 465 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKL---------------------------LKNKGIPHQVLNAK 465 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHH---------------------------HHTTTCCCEEECSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHH---------------------------HHHCCCCEEEeeCC
Confidence 23333344444432 234444444443333333332 44678889999999
Q ss_pred CCHHhHHHHhhhccCCCCCeeEEEEcCccccccccC---------ceEEEEcCCCCCCcccCCccccccCCHhHHHHHhc
Q psy12699 1074 LPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS---------IRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAG 1144 (1269)
Q Consensus 1074 l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~---------v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~G 1144 (1269)
+.+.+|..+.++|+ .| +|+||||+++||+||+ +.+||+++. |.|.+.|+||+|
T Consensus 466 ~~~rEr~ii~~ag~--~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~--------------p~s~r~y~hr~G 527 (844)
T 1tf5_A 466 NHEREAQIIEEAGQ--KG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER--------------HESRRIDNQLRG 527 (844)
T ss_dssp CHHHHHHHHTTTTS--TT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC--------------CSSHHHHHHHHT
T ss_pred ccHHHHHHHHHcCC--CC--eEEEeCCccccCcCccccchhhhcCCcEEEEecC--------------CCCHHHHHhhcC
Confidence 99999988888887 55 6999999999999994 679999998 889999999999
Q ss_pred ccCCCCCccccccCCCCccc
Q psy12699 1145 RAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1145 RaGR~G~~g~~~~~~~p~~~ 1164 (1269)
||||.|.+|.++++..++.+
T Consensus 528 RTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 528 RSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSGGGCCEEEEEEEETTSS
T ss_pred ccccCCCCCeEEEEecHHHH
Confidence 99999999999777666644
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=4.5e-26 Score=292.21 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=79.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c-----CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S-----AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~-----~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~ 887 (1269)
+++|+|+++++|||+|||++++..+. . +++++|++||++|+.|++++++++ +.++..++|+.....+
T Consensus 25 ~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 104 (696)
T 2ykg_A 25 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVP 104 (696)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSC
T ss_pred HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCcccccc
Confidence 46789999999999999998843332 2 278999999999999999999775 5678888887543222
Q ss_pred CCC--CCCCEEEEcccccc---------CCCCeeEEEEecccccccC
Q psy12699 888 GEE--KPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 888 ~~~--~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~ 923 (1269)
... .+.+|+|+||+.+. .+.+++++|+||||++.+.
T Consensus 105 ~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 105 VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 111 26899999998442 3668999999999999654
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.9e-25 Score=271.37 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=68.8
Q ss_pred CceeEEEcC--------CCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccC
Q psy12699 1064 GTEVAVIYG--------SLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLI 1134 (1269)
Q Consensus 1064 gi~v~~~Hg--------~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~ 1134 (1269)
|+++..+|| +++.++|++++++|+ +|+.+|||||+++++|+|+ ++++||++|. |.
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~--~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~--------------~~ 448 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFA--RGEFNVLVATSVGEEGLDVPEVDLVVFYEP--------------VP 448 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHH--HTSCSEEEECGGGGGGGGSTTCCEEEESSC--------------CH
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHh--cCCceEEEECCccccCCCchhCCEEEEeCC--------------CC
Confidence 445666777 999999999999999 8999999999999999999 9999999998 78
Q ss_pred CHhHHHHHhcccCCCCCccccccCCCC
Q psy12699 1135 SVSAALQIAGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1135 s~~~y~QR~GRaGR~G~~g~~~~~~~p 1161 (1269)
++.+|.||+||+||.|+ |.++....+
T Consensus 449 ~~~~~~Qr~GR~~R~g~-g~~~~l~~~ 474 (494)
T 1wp9_A 449 SAIRSIQRRGRTGRHMP-GRVIILMAK 474 (494)
T ss_dssp HHHHHHHHHTTSCSCCC-SEEEEEEET
T ss_pred CHHHHHHHHhhccCCCC-ceEEEEEec
Confidence 89999999999999998 777544444
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.92 E-value=1.2e-25 Score=296.03 Aligned_cols=238 Identities=12% Similarity=0.124 Sum_probs=155.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhcc---CCCceeeecceeeecc---C--
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDR---GTPCDLITGEEKKFIQ---G-- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~---g~~v~~~~G~~~~~~~---~-- 888 (1269)
+++|+|++++||||||||++++..+ ..+++++|++|||+||.|++++++++ +.++..++|+....+. .
T Consensus 90 il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~ 169 (1104)
T 4ddu_A 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKS 169 (1104)
T ss_dssp HTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 4778999999999999999774333 34889999999999999999999884 4578888888654111 1
Q ss_pred -CCCCCCEEEEccccc-cC-----CCCeeEEEEeccccccc-----------CCchhH-HHHHHhccC-----------c
Q psy12699 889 -EEKPANHVACTVEMT-SV-----NIPYEVAVIDEIQMMRD-----------ITRGWA-WTRALLGLM-----------A 938 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~-~~-----l~~~~~lViDEah~~~d-----------~~rg~~-~~~~ll~l~-----------~ 938 (1269)
....++|+|+||+.+ .. +.+++++|+||||++.+ .++... +..++..++ .
T Consensus 170 l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~ 249 (1104)
T 4ddu_A 170 FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLK 249 (1104)
T ss_dssp HHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCC
T ss_pred HhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCC
Confidence 122489999999955 22 67999999999988754 333333 455555443 3
Q ss_pred ceEEEEeecC-ChHHHH-HHHHH-cCCceEEEeccc-CCccc-------cccccccccCCcCCCCEEEEe-cHHhHHHHH
Q psy12699 939 KEIHVCGEAG-AVDLVK-AIMMT-TNEDVEVYKYKR-LTELQ-------IEDSAVGSLDNIQPGDCIVCF-SKNDVYTVS 1006 (1269)
Q Consensus 939 ~~~~l~~s~~-~~~~~~-~l~~~-~~~~~~v~~~~r-~~~l~-------~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~ 1006 (1269)
....++.+++ ....++ .+... .. +.+..... ...+. ........+.. ..++++||+ +++.++.++
T Consensus 250 ~~q~ll~SAT~~p~~~~~~~~~~~l~--i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 250 PGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHVRISSRSKEKLVELLEI-FRDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp CCEEEEECBSSCCCSSTTHHHHHHTC--CCCCBCCCCCCCEEEEEESCCCHHHHHHHHHH-HCSSEEEEESSSHHHHHHH
T ss_pred CceEEEEcCCCCcHHHHHHHhhccee--EEeccCCCCcCCceeEEEecCHHHHHHHHHHh-cCCCEEEEECcHHHHHHHH
Confidence 4455555555 221111 11111 11 11100000 00000 00000111111 235666666 777888888
Q ss_pred HHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeE-EEcCCCCHHhHHHHhhh
Q psy12699 1007 RGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVA-VIYGSLPPTTKLAQASK 1085 (1269)
Q Consensus 1007 ~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~-~~Hg~l~~~eR~~v~~~ 1085 (1269)
+.|.+.+.+ +. .+|| +|++ ++.
T Consensus 327 ~~L~~~g~~---------------------------------------------------~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 327 EYLKRFKFN---------------------------------------------------VGETWSE-----FEKN-FED 349 (1104)
T ss_dssp HHHHHTTCC---------------------------------------------------EEESSSS-----HHHH-HHH
T ss_pred HHHHhCCCC---------------------------------------------------eeeEecC-----cHHH-HHH
Confidence 877765543 55 6677 2445 899
Q ss_pred ccCCCCCeeEEEE----cCcccccccc-C-ceEEEEcCCCC
Q psy12699 1086 FNDPDNPCKVMVA----TDAIGMGLNL-S-IRRVIFYSLIK 1120 (1269)
Q Consensus 1086 F~~~~g~~~VLVa----Tdv~~~GIDi-~-v~~VI~~~~~k 1120 (1269)
|+ +|+.+|||| ||+++||||+ + |++|||+|+++
T Consensus 350 F~--~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 350 FK--VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HH--HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HH--CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99 999999999 9999999999 8 99999999977
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=4.2e-25 Score=286.19 Aligned_cols=105 Identities=15% Similarity=0.136 Sum_probs=80.2
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hc-----CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeec
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LS-----AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFI 886 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~-----~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~ 886 (1269)
.+++|+|+++++|||+|||++++..+ .+ +++++|++||++|+.|++++++++ +.++..++|+.....
T Consensus 259 ~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 338 (797)
T 4a2q_A 259 PAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNV 338 (797)
T ss_dssp HHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----
T ss_pred HHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhh
Confidence 35778999999999999999983332 22 678999999999999999998765 788999999865433
Q ss_pred cCC--CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCC
Q psy12699 887 QGE--EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 887 ~~~--~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~ 924 (1269)
+.. ..+++|+|+||+.+. .+.+++++|+||||++.+..
T Consensus 339 ~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 339 SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS
T ss_pred hHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc
Confidence 211 126899999988443 35678999999999997644
No 45
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=1.6e-25 Score=276.43 Aligned_cols=286 Identities=15% Similarity=0.070 Sum_probs=177.4
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc----C-CcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS----A-ESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQGEEK 891 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~----~-~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~~~~ 891 (1269)
+++++++++++|||+|||++++..+.. + ++++|++||++|+.|+++++++++. ++..++|+....++ ...
T Consensus 125 ~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~ 203 (510)
T 2oca_A 125 GLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-YKN 203 (510)
T ss_dssp HHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-GCT
T ss_pred HHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-ccc
Confidence 456789999999999999998444332 3 4999999999999999999987643 45666776443322 224
Q ss_pred CCCEEEEcccccc-----CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHH---HHHHHHcCCc
Q psy12699 892 PANHVACTVEMTS-----VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLV---KAIMMTTNED 963 (1269)
Q Consensus 892 ~~~Ivv~T~e~~~-----~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~---~~l~~~~~~~ 963 (1269)
..+|+|+|++.+. .+.+++++|+||+|++.+ ..+..++..+......+..++|+.... ..+....+..
T Consensus 204 ~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~ 279 (510)
T 2oca_A 204 DAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEI 279 (510)
T ss_dssp TCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSE
T ss_pred CCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCe
Confidence 6899999998443 277999999999999965 356666666644444444455553221 1122222221
Q ss_pred eE-EEe-----cccCCccccccccccccC----CcCCCCE-----EEEecHHhHHHHHHHHHhc---CCceEEEeCCCCh
Q psy12699 964 VE-VYK-----YKRLTELQIEDSAVGSLD----NIQPGDC-----IVCFSKNDVYTVSRGIESR---GTEVAVIYGSLPP 1025 (1269)
Q Consensus 964 ~~-v~~-----~~r~~~l~~~~~~~~~l~----~~~~g~~-----iv~~s~~~~~~l~~~L~~~---~~~~~~i~g~l~~ 1025 (1269)
.. +.. .....+..+.......-. ......+ .+.........+.+.+.+. +.+..+++.....
T Consensus 280 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~ 359 (510)
T 2oca_A 280 FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSH 359 (510)
T ss_dssp ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 10 000 000000000000000000 0000000 0000111222233333332 4555556554211
Q ss_pred hhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEc-Ccccc
Q psy12699 1026 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT-DAIGM 1104 (1269)
Q Consensus 1026 ~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaT-dv~~~ 1104 (1269)
....... |...+.++..+||++++++|+++++.|+ +|+.+||||| +++++
T Consensus 360 ~~~l~~~---------------------------L~~~~~~v~~~~g~~~~~~r~~i~~~f~--~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 360 GKAIFDL---------------------------IKNEYDKVYYVSGEVDTETRNIMKTLAE--NGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHH---------------------------HHTTCSSEEEESSSTTHHHHHHHHHHHH--HCCSCEEEEEHHHHHH
T ss_pred HHHHHHH---------------------------HHHcCCCeEEEECCCCHHHHHHHHHHHh--CCCCCEEEEEcChhhc
Confidence 1111111 1223345889999999999999999999 8999999999 99999
Q ss_pred cccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccc
Q psy12699 1105 GLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFE 1154 (1269)
Q Consensus 1105 GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~ 1154 (1269)
|+|+ ++++||+++. |.+..+|+||+||+||.|+++.
T Consensus 411 GiDip~v~~vi~~~~--------------~~s~~~~~Q~~GR~gR~g~~~~ 447 (510)
T 2oca_A 411 GISVKNLHHVVLAHG--------------VKSKIIVLQTIGRVLRKHGSKT 447 (510)
T ss_dssp SCCCCSEEEEEESSC--------------CCSCCHHHHHHHHHHTTTCCCC
T ss_pred ccccccCcEEEEeCC--------------CCCHHHHHHHHhcccccCCCCc
Confidence 9999 9999999998 7788999999999999998873
No 46
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.92 E-value=6.2e-26 Score=291.07 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=76.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc------C----CcEEEEcchHHHHHHH-HHHHhccC---CCceeeecceeeec
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS------A----ESGVYCGPLKMLATEV-FKKSNDRG---TPCDLITGEEKKFI 886 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~------~----~~~lil~Ptr~La~Qi-~~~l~~~g---~~v~~~~G~~~~~~ 886 (1269)
+++|+|+++++|||+|||++++..+.. . ++++|++|+++|+.|+ ++++++++ .++..++|+....+
T Consensus 19 il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~ 98 (699)
T 4gl2_A 19 ALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKI 98 (699)
T ss_dssp HHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCC
T ss_pred HHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhh
Confidence 467899999999999999998443322 2 8899999999999999 99887754 57888888865432
Q ss_pred cCC--CCCCCEEEEcccccc--------------CCCCeeEEEEeccccccc
Q psy12699 887 QGE--EKPANHVACTVEMTS--------------VNIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 887 ~~~--~~~~~Ivv~T~e~~~--------------~l~~~~~lViDEah~~~d 922 (1269)
+.. ....+|+|+||+.+. .+.+++++||||||++.+
T Consensus 99 ~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 99 SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp CHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred HHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 211 126899999988443 257899999999999854
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=1.6e-25 Score=273.51 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=172.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccCCC-ceeeecceeeeccCCCCCCCEEEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRGTP-CDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~-v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
+++++++++++|||+|||++++..+.. +.+++|++|+++|+.|+++++++++.+ ++.++|+... ..+|+|+
T Consensus 105 i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------~~~Ivv~ 177 (472)
T 2fwr_A 105 WLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------LKPLTVS 177 (472)
T ss_dssp HTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------CCSEEEE
T ss_pred HHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------cCCEEEE
Confidence 466778999999999999999655544 789999999999999999999889888 8888887543 5789999
Q ss_pred ccccccC-----CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChH------H-------------HH
Q psy12699 899 TVEMTSV-----NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD------L-------------VK 954 (1269)
Q Consensus 899 T~e~~~~-----l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~------~-------------~~ 954 (1269)
|++.+.. ..+++++|+||+|++.+..+. .++..+..... +..++++.. . ..
T Consensus 178 T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~----~~~~~~~~~~~-l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~ 252 (472)
T 2fwr_A 178 TYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYV----QIAQMSIAPFR-LGLTATFEREDGRHEILKEVVGGKVFELFPD 252 (472)
T ss_dssp EHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTH----HHHHTCCCSEE-EEEESCCCCTTSGGGSHHHHTCCEEEECCHH
T ss_pred EcHHHHHHHHHhcCCCCEEEEECCcCCCChHHH----HHHHhcCCCeE-EEEecCccCCCCHHHHHHHHhCCeEeecCHH
Confidence 9985432 357999999999999875443 34444444433 333444431 0 11
Q ss_pred HHHHHcCCceEEEec-ccCCccc---ccc------cc----------ccccCCc------CC-C-CE---------EEEe
Q psy12699 955 AIMMTTNEDVEVYKY-KRLTELQ---IED------SA----------VGSLDNI------QP-G-DC---------IVCF 997 (1269)
Q Consensus 955 ~l~~~~~~~~~v~~~-~r~~~l~---~~~------~~----------~~~l~~~------~~-g-~~---------iv~~ 997 (1269)
++......+...... ....+.. +.. .. ...+... .+ . .. +.+.
T Consensus 253 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (472)
T 2fwr_A 253 SLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFN 332 (472)
T ss_dssp HHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHS
T ss_pred HHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhc
Confidence 111110111111000 0000000 000 00 0000000 00 0 00 0001
Q ss_pred cHHhHHHHHHHHHhc-CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCH
Q psy12699 998 SKNDVYTVSRGIESR-GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPP 1076 (1269)
Q Consensus 998 s~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~ 1076 (1269)
.......+.+.+++. +.++.++........+.... +.+..+||+++.
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~--------------------------------l~~~~~~g~~~~ 380 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV--------------------------------FLIPAITHRTSR 380 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHH--------------------------------TTCCBCCSSSCS
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHH--------------------------------hCcceeeCCCCH
Confidence 222344455555543 22222222221111111111 015678999999
Q ss_pred HhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCc-cc
Q psy12699 1077 TTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH-FE 1154 (1269)
Q Consensus 1077 ~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~-g~ 1154 (1269)
++|++++++|+ +|+.+|||||+++++|+|+ ++++||+++. |.++.+|.||+||+||.|+. +.
T Consensus 381 ~~R~~~~~~F~--~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~--------------~~s~~~~~Q~~GR~~R~g~~k~~ 444 (472)
T 2fwr_A 381 EEREEILEGFR--TGRFRAIVSSQVLDEGIDVPDANVGVIMSG--------------SGSAREYIQRLGRILRPSKGKKE 444 (472)
T ss_dssp HHHHTHHHHHH--HSSCSBCBCSSCCCSSSCSCCBSEEEEECC--------------SSCCHHHHHHHHHSBCCCTTTCC
T ss_pred HHHHHHHHHHh--CCCCCEEEEcCchhcCcccccCcEEEEECC--------------CCCHHHHHHHHhhccCCCCCCce
Confidence 99999999999 8999999999999999999 9999999998 78899999999999999976 56
Q ss_pred c
Q psy12699 1155 K 1155 (1269)
Q Consensus 1155 ~ 1155 (1269)
+
T Consensus 445 ~ 445 (472)
T 2fwr_A 445 A 445 (472)
T ss_dssp E
T ss_pred E
Confidence 5
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=1.3e-24 Score=284.37 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=79.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc---------CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS---------AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~---------~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~ 887 (1269)
+++|+|+++++|||+|||++++..+.. +++++|++||++|+.|++++++++ +.++..++|+.....+
T Consensus 260 il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 260 AINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVS 339 (936)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----C
T ss_pred HHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhH
Confidence 477899999999999999998544432 678999999999999999998764 7788999998654332
Q ss_pred CCC--CCCCEEEEcccccc---------CCCCeeEEEEecccccccCC
Q psy12699 888 GEE--KPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 888 ~~~--~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~ 924 (1269)
... .+++|+|+||+.+. .+.+++++|+||||++.+..
T Consensus 340 ~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~ 387 (936)
T 4a2w_A 340 VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 387 (936)
T ss_dssp CHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC
T ss_pred HHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc
Confidence 211 15799999988443 25678999999999997643
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=6.1e-25 Score=271.04 Aligned_cols=101 Identities=18% Similarity=0.040 Sum_probs=78.3
Q ss_pred ccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
++|+ ++.++||+|||++|..+ ...+++++|++|||+||.|+++.+.. +|.++++++|+..........++
T Consensus 87 l~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~~~ 164 (853)
T 2fsf_A 87 NERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAA 164 (853)
T ss_dssp HSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHS
T ss_pred cCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhcCC
Confidence 5666 89999999999998322 23478999999999999999988754 57899999998654322222368
Q ss_pred CEEEEccccc---------------cCCCCeeEEEEecccccc-cCC
Q psy12699 894 NHVACTVEMT---------------SVNIPYEVAVIDEIQMMR-DIT 924 (1269)
Q Consensus 894 ~Ivv~T~e~~---------------~~l~~~~~lViDEah~~~-d~~ 924 (1269)
+|+||||..+ ..+++++++|+||||+|+ |++
T Consensus 165 dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 165 DITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp SEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred CEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 9999998643 125789999999999997 654
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.91 E-value=4.7e-25 Score=290.91 Aligned_cols=235 Identities=13% Similarity=0.108 Sum_probs=145.8
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhcc----CC----CceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSNDR----GT----PCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~~----g~----~v~~~~G~~~~~~~~ 888 (1269)
+++|+|++++||||||||+.++..+ ..+++++|++|||+||.|++++++++ +. ++..++|+.....+.
T Consensus 68 il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~ 147 (1054)
T 1gku_B 68 ILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKE 147 (1054)
T ss_dssp HHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHH
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHH
Confidence 4678999999999999997443222 23789999999999999999998764 44 677788876554310
Q ss_pred ----CCCCCCEEEEcccccc----CCCCeeEEEEecccccccCCchhHHHHHHhccC-----------c-ceEEEE-eec
Q psy12699 889 ----EEKPANHVACTVEMTS----VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM-----------A-KEIHVC-GEA 947 (1269)
Q Consensus 889 ----~~~~~~Ivv~T~e~~~----~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~-----------~-~~~~l~-~s~ 947 (1269)
.-..++|+|+||+.+. .+.+++++|+||||++++ ++..+..++..+. . .+..++ ++.
T Consensus 148 ~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~ 225 (1054)
T 1gku_B 148 NFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTA 225 (1054)
T ss_dssp HHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCC
T ss_pred HHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecC
Confidence 0113899999998432 366899999999999987 5666666653331 1 122333 333
Q ss_pred CChH-HHHHHHHH-cCC---ceE-----EEecccCCccccccccccccCCcCCCCEEEEe-cHHhHHHHHHHHHhcCCce
Q psy12699 948 GAVD-LVKAIMMT-TNE---DVE-----VYKYKRLTELQIEDSAVGSLDNIQPGDCIVCF-SKNDVYTVSRGIESRGTEV 1016 (1269)
Q Consensus 948 ~~~~-~~~~l~~~-~~~---~~~-----v~~~~r~~~l~~~~~~~~~l~~~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~ 1016 (1269)
+... ....+... ... ... +..... +..........+... .+.++||+ +++.++.+++.|++. .
T Consensus 226 t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~-- 299 (1054)
T 1gku_B 226 TAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV--NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-F-- 299 (1054)
T ss_dssp CSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-S--
T ss_pred CCchhHHHHHhhcceEEEccCcccCcCCceEEEe--chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-c--
Confidence 3321 11122211 110 000 000000 000000011112222 35677777 888888888776543 2
Q ss_pred EEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEE
Q psy12699 1017 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVM 1096 (1269)
Q Consensus 1017 ~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VL 1096 (1269)
++..+||++ +++++.|+ +|+.+||
T Consensus 300 -------------------------------------------------~v~~lhg~~-----~~~l~~F~--~G~~~VL 323 (1054)
T 1gku_B 300 -------------------------------------------------RIGIVTATK-----KGDYEKFV--EGEIDHL 323 (1054)
T ss_dssp -------------------------------------------------CEEECTTSS-----SHHHHHHH--HTSCSEE
T ss_pred -------------------------------------------------CeeEEeccH-----HHHHHHHH--cCCCcEE
Confidence 277789887 36678899 9999999
Q ss_pred EE----cCcccccccc-Cc-eEEEEcCCC
Q psy12699 1097 VA----TDAIGMGLNL-SI-RRVIFYSLI 1119 (1269)
Q Consensus 1097 Va----Tdv~~~GIDi-~v-~~VI~~~~~ 1119 (1269)
|| ||++++|||+ +| ++||++|.+
T Consensus 324 VaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 324 IGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EEECC------CCSCCTTTCCEEEEESCC
T ss_pred EEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99 9999999999 85 999999997
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.90 E-value=5.3e-24 Score=262.67 Aligned_cols=296 Identities=17% Similarity=0.073 Sum_probs=184.8
Q ss_pred ccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKPA 893 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~~ 893 (1269)
++|+ ++.++||+|||+++..+ .+.++.++|++|||+||.|.++.+.. +|.++++++|+.....+.....+
T Consensus 124 l~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y~~ 201 (922)
T 1nkt_A 124 HLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNA 201 (922)
T ss_dssp HTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHHHS
T ss_pred hcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhcCC
Confidence 5566 99999999999988322 23478999999999999999987754 68899999998654322222368
Q ss_pred CEEEEccccc---------------cCCCCeeEEEEecccccc-cCCc---------------hhHHHHHHhccC-----
Q psy12699 894 NHVACTVEMT---------------SVNIPYEVAVIDEIQMMR-DITR---------------GWAWTRALLGLM----- 937 (1269)
Q Consensus 894 ~Ivv~T~e~~---------------~~l~~~~~lViDEah~~~-d~~r---------------g~~~~~~ll~l~----- 937 (1269)
+|+++||..+ ..+++++++||||||.|+ |+.| ......++..++
T Consensus 202 DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy 281 (922)
T 1nkt_A 202 DITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHY 281 (922)
T ss_dssp SEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTE
T ss_pred CEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccc
Confidence 9999997633 125689999999999997 5432 234556666675
Q ss_pred ----cceEEE-----------------EeecCChHHHHHHHH--------HcCCceEEEec---------ccCCc-----
Q psy12699 938 ----AKEIHV-----------------CGEAGAVDLVKAIMM--------TTNEDVEVYKY---------KRLTE----- 974 (1269)
Q Consensus 938 ----~~~~~l-----------------~~s~~~~~~~~~l~~--------~~~~~~~v~~~---------~r~~~----- 974 (1269)
.+.... +.+++..+....+.. ....++.+... .|..+
T Consensus 282 ~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~s 361 (922)
T 1nkt_A 282 EVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYN 361 (922)
T ss_dssp EEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCS
T ss_pred eeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCcccc
Confidence 333444 334443322222210 01111111110 01000
Q ss_pred --------------cccccccccccC----------------------------------CcCC--------CCEEEEe-
Q psy12699 975 --------------LQIEDSAVGSLD----------------------------------NIQP--------GDCIVCF- 997 (1269)
Q Consensus 975 --------------l~~~~~~~~~l~----------------------------------~~~~--------g~~iv~~- 997 (1269)
+.........+. .++. ..-+++.
T Consensus 362 dGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t 441 (922)
T 1nkt_A 362 EGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKT 441 (922)
T ss_dssp TTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESC
T ss_pred chhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeC
Confidence 000000000000 0000 0112233
Q ss_pred cHHhHHHHHHHHHh---cCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCceeEEEcCCC
Q psy12699 998 SKNDVYTVSRGIES---RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSL 1074 (1269)
Q Consensus 998 s~~~~~~l~~~L~~---~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v~~~Hg~l 1074 (1269)
.+.....+.+.+.+ .+..+.+...+....+..... |...|+++.++||+.
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~---------------------------L~~~Gi~~~vLnak~ 494 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQ---------------------------FTKRRIPHNVLNAKY 494 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---------------------------HHHTTCCCEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHH---------------------------HHHCCCCEEEecCCh
Confidence 22333344444432 234444444444333433333 345788899999999
Q ss_pred CHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-Cc-------------------------------------------
Q psy12699 1075 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SI------------------------------------------- 1110 (1269)
Q Consensus 1075 ~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v------------------------------------------- 1110 (1269)
.+.+|..+.++|+ .| .|+||||+++||+|| .+
T Consensus 495 ~~rEa~iia~agr--~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (922)
T 1nkt_A 495 HEQEATIIAVAGR--RG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKE 570 (922)
T ss_dssp HHHHHHHHHTTTS--TT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHhcCC--CC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHh
Confidence 8888888889999 67 699999999999999 54
Q ss_pred ---------eEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1111 ---------RRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1111 ---------~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
.+||+++. |.|...|.||+|||||.|..|.++++..++.+
T Consensus 571 ~~~V~~~GGlhVI~te~--------------pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 571 AKEVIEAGGLYVLGTER--------------HESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTTSEEEEECSC--------------CSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hhHHHhcCCcEEEeccC--------------CCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 59999998 88999999999999999999999766665543
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.87 E-value=2.4e-22 Score=252.16 Aligned_cols=259 Identities=13% Similarity=0.129 Sum_probs=146.4
Q ss_pred CceEEeccCCCCchHHHHHHH---h----------cCCcEEEEcchHHHHHHHH-HHHhccCCCceeeecceeeeccCCC
Q psy12699 825 PLKIHAGPTNSGKTYHALERF---L----------SAESGVYCGPLKMLATEVF-KKSNDRGTPCDLITGEEKKFIQGEE 890 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~~l---~----------~~~~~lil~Ptr~La~Qi~-~~l~~~g~~v~~~~G~~~~~~~~~~ 890 (1269)
+++++++|||||||++++..+ . .+++++|++||++|+.|++ +.++.++..+..+.++.. .
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~------~ 272 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKV------V 272 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEECCC--C------C
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccCC------C
Confidence 568888999999998873322 1 3589999999999999999 788888876666554421 2
Q ss_pred CCCCEEEEccccccC------------CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHH-HHHHH
Q psy12699 891 KPANHVACTVEMTSV------------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDL-VKAIM 957 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~~------------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~-~~~l~ 957 (1269)
.+.+|+|+|++.+.. ..+++++|+||||++.+.+ ...|..++..++...+ +..++|+... .....
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~~~-l~lTATP~~~~~~~~~ 350 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPAFQ-IGMTATPLREDNRDTY 350 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTSEE-EEEESSCSCTTTHHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCcceE-EEeccccccccchhHH
Confidence 367999999985432 3468999999999996532 2356666666654433 3333443311 11112
Q ss_pred HHcCCc-----------------eEEEecccCCc---cc-----------------cccc------------------cc
Q psy12699 958 MTTNED-----------------VEVYKYKRLTE---LQ-----------------IEDS------------------AV 982 (1269)
Q Consensus 958 ~~~~~~-----------------~~v~~~~r~~~---l~-----------------~~~~------------------~~ 982 (1269)
...+.. ..+........ .. +... ..
T Consensus 351 ~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~ 430 (590)
T 3h1t_A 351 RYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLT 430 (590)
T ss_dssp HHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHH
Confidence 112221 11110000000 00 0000 00
Q ss_pred cccCCcC-CCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccccc
Q psy12699 983 GSLDNIQ-PGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGI 1060 (1269)
Q Consensus 983 ~~l~~~~-~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l 1060 (1269)
..+.... .+.++||+ +++.++.+++.|.+.+....
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~------------------------------------------- 467 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLS------------------------------------------- 467 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHH-------------------------------------------
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhh-------------------------------------------
Confidence 0001111 23455555 66667777666655432100
Q ss_pred ccCCceeEEEcCCCCHHhHHHHhhhccCCCCCee---EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCH
Q psy12699 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCK---VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISV 1136 (1269)
Q Consensus 1061 ~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~---VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~ 1136 (1269)
...+..+..+||+++. +|++++++|+ +|+.+ |||||+++++|+|+ ++++||+++. |.+.
T Consensus 468 ~~~~~~~~~i~g~~~~-~r~~~l~~F~--~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~--------------~~s~ 530 (590)
T 3h1t_A 468 RKHPDYVARVTSEEGK-IGKGHLSRFQ--ELETSTPVILTTSQLLTTGVDAPTCKNVVLARV--------------VNSM 530 (590)
T ss_dssp TTCTTSEEECSSTTHH-HHHHHHHHHH--CTTCCCCCEEEESSTTTTTCCCTTEEEEEEESC--------------CCCH
T ss_pred ccCCCeEEEEeCCChH-HHHHHHHHHh--CCCCCCCEEEEECChhhcCccchheeEEEEEec--------------CCCh
Confidence 0011126678998764 7999999999 66555 89999999999999 9999999998 7889
Q ss_pred hHHHHHhcccCCCCC
Q psy12699 1137 SAALQIAGRAGRFNT 1151 (1269)
Q Consensus 1137 ~~y~QR~GRaGR~G~ 1151 (1269)
..|+||+||+||.++
T Consensus 531 ~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 531 SEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHTTSCCCBG
T ss_pred HHHHHHHhhhcccCc
Confidence 999999999999775
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.85 E-value=1.7e-21 Score=255.22 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCceeEEEcCCCCHHhHHHHhhhccCCCCC--eeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHH
Q psy12699 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNP--CKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAA 1139 (1269)
Q Consensus 1063 ~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~--~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y 1139 (1269)
.|+++..+||+|++++|+++++.|+ +|+ ++|||||+++++|+|+ ++++||++|+ |.++.+|
T Consensus 527 ~g~~~~~lhG~~~~~~R~~~l~~F~--~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~--------------p~~~~~~ 590 (968)
T 3dmq_A 527 EGIRAAVFHEGMSIIERDRAAAWFA--EEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL--------------PFNPDLL 590 (968)
T ss_dssp TCCCEEEECTTSCTTHHHHHHHHHH--STTSSCEEEECSCCTTCSSCCTTCCEEECSSC--------------CSSHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHh--CCCCcccEEEecchhhcCCCcccCcEEEEecC--------------CCCHHHH
Confidence 3778999999999999999999999 776 9999999999999999 9999999998 7889999
Q ss_pred HHHhcccCCCCCccccccC
Q psy12699 1140 LQIAGRAGRFNTHFEKLAG 1158 (1269)
Q Consensus 1140 ~QR~GRaGR~G~~g~~~~~ 1158 (1269)
.||+||+||.|+++.+..+
T Consensus 591 ~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 591 EQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp HHHHHTTSCSSSCSCCEEE
T ss_pred HHHhhccccCCCCceEEEE
Confidence 9999999999999977444
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=1.8e-19 Score=221.66 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=65.2
Q ss_pred CceeEEEcCCCCHHhHHHHhhhccCCCC-Cee-EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHH
Q psy12699 1064 GTEVAVIYGSLPPTTKLAQASKFNDPDN-PCK-VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAAL 1140 (1269)
Q Consensus 1064 gi~v~~~Hg~l~~~eR~~v~~~F~~~~g-~~~-VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~ 1140 (1269)
|+++..+||++++++|+++++.|+ ++ ..+ +|+||+++++|+|+ .+++||++|+ |.++..|.
T Consensus 366 ~~~~~~~~g~~~~~~R~~~~~~F~--~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~--------------~~~~~~~~ 429 (500)
T 1z63_A 366 NTEVPFLYGELSKKERDDIISKFQ--NNPSVKFIVLSVKAGGFGINLTSANRVIHFDR--------------WWNPAVED 429 (500)
T ss_dssp TCCCCEEETTSCHHHHHHHHHHHH--HCTTCCCCEEECCCC-CCCCCTTCSEEEESSC--------------CSCC---C
T ss_pred CCCeEEEECCCCHHHHHHHHHHhc--CCCCCCEEEEecccccCCCchhhCCEEEEeCC--------------CCCcchHH
Confidence 566889999999999999999999 55 444 89999999999999 9999999998 78899999
Q ss_pred HHhcccCCCCCcccc
Q psy12699 1141 QIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1141 QR~GRaGR~G~~g~~ 1155 (1269)
||+||++|.|++..+
T Consensus 430 Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 430 QATDRVYRIGQTRNV 444 (500)
T ss_dssp HHHHTTTTTTTTSCE
T ss_pred HHHHHHHHcCCCCee
Confidence 999999999998766
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.76 E-value=7.6e-18 Score=203.53 Aligned_cols=87 Identities=20% Similarity=0.105 Sum_probs=73.2
Q ss_pred cccCCceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCccccccccC---------ceEEEEcCCCCCCcccCCccc
Q psy12699 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS---------IRRVIFYSLIKPSLNEKGERE 1130 (1269)
Q Consensus 1060 l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi~---------v~~VI~~~~~k~~~~~~G~~~ 1130 (1269)
|...|++..++||+..+++|..+.++|+ +| .|+||||+++||+||. ..+||+++.
T Consensus 494 L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~------------ 557 (822)
T 3jux_A 494 LKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTER------------ 557 (822)
T ss_dssp HHTTTCCCEEECSCHHHHHHHHHHHHHS--TT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------
T ss_pred HHHCCCCEEEeeCCchHHHHHHHHhCCC--CC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCC------------
Confidence 3456788889999977777777777787 55 5999999999999993 459999998
Q ss_pred cccCCHhHHHHHhcccCCCCCccccccCCCCccc
Q psy12699 1131 IDLISVSAALQIAGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1131 ~~p~s~~~y~QR~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
|.+.+.|.||+|||||.|.+|.++++..++.+
T Consensus 558 --Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 558 --HESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp --CSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred --CCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 88999999999999999999999776666543
No 56
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.70 E-value=3.8e-17 Score=212.27 Aligned_cols=303 Identities=11% Similarity=0.077 Sum_probs=163.3
Q ss_pred CCceEEeccCCCCchHHHHH--HHhc----CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC---CCCCCC
Q psy12699 824 GPLKIHAGPTNSGKTYHALE--RFLS----AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG---EEKPAN 894 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~--~l~~----~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~---~~~~~~ 894 (1269)
+++.++++|||||||++++. .+.. ..++||++||++|+.|+.+.++.++.. .+.|........ .....+
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~--~v~~~~s~~~l~~~L~~~~~~ 377 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPD--SVNGSENTAGLKRNLDKDDNK 377 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTT--CSSSSCCCHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhccc--ccccccCHHHHHHHhcCCCCC
Confidence 46788999999999988722 2222 368999999999999999999887642 122222111111 123589
Q ss_pred EEEEcccccc----------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChH--------HHHHH
Q psy12699 895 HVACTVEMTS----------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVD--------LVKAI 956 (1269)
Q Consensus 895 Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~--------~~~~l 956 (1269)
|+|+|++.+. .+.+..++|+||||++.. +..+..+...++. ...+..++||.. ....+
T Consensus 378 IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~ 453 (1038)
T 2w00_A 378 IIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASV 453 (1038)
T ss_dssp EEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHH
T ss_pred EEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHH
Confidence 9999987432 245789999999999852 3344555555543 333444444431 11222
Q ss_pred H--------------HHcCCceEEEecccCCcc----------ccc---------c-----cccccc-CC----------
Q psy12699 957 M--------------MTTNEDVEVYKYKRLTEL----------QIE---------D-----SAVGSL-DN---------- 987 (1269)
Q Consensus 957 ~--------------~~~~~~~~v~~~~r~~~l----------~~~---------~-----~~~~~l-~~---------- 987 (1269)
+ +....++.+......... .+. . .....+ ..
T Consensus 454 FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~ 533 (1038)
T 2w00_A 454 FGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFP 533 (1038)
T ss_dssp HCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred hCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 1 001111211110000000 000 0 000000 00
Q ss_pred -cCCCCEEEEe-cHHhHHHHHHHHHhcC------------CceEEEeCCCChhhHHH--Hhc--ccCCCC-CC--ccchh
Q psy12699 988 -IQPGDCIVCF-SKNDVYTVSRGIESRG------------TEVAVIYGSLPPTTKLA--QAS--KFNDPD-NP--CKVMV 1046 (1269)
Q Consensus 988 -~~~g~~iv~~-s~~~~~~l~~~L~~~~------------~~~~~i~g~l~~~~r~~--~~~--~f~~~~-~~--~~~l~ 1046 (1269)
...+.+++|+ +++.|..+.+.+.+.+ .++++++..-+.+.... .+. .+.... .. .+.+.
T Consensus 534 ~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~ 613 (1038)
T 2w00_A 534 GSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLD 613 (1038)
T ss_dssp SCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHH
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHH
Confidence 0123466666 8888988888887654 34444443211100000 000 000000 00 00000
Q ss_pred hhhhhccCccccccccCCceeEEEcC---CCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCC
Q psy12699 1047 ATDAIGMGLNFRGIESRGTEVAVIYG---SLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPS 1122 (1269)
Q Consensus 1047 ~t~~~~~~~~~~~l~~~gi~v~~~Hg---~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~ 1122 (1269)
..+ .++.++... .|+ +-.+++|+.++++|+ +|+++|||+||.+.+|+|+ .+ +|+++|.
T Consensus 614 --~~I---~dyn~~f~~------~~~~~~~~~~~~R~~i~~~Fk--~g~i~ILIvvd~lltGfDiP~l-~tlylDk---- 675 (1038)
T 2w00_A 614 --AAI---REYNSHFKT------NFSTDSNGFQNYYRDLAQRVK--NQDIDLLIVVGMFLTGFDAPTL-NTLFVDK---- 675 (1038)
T ss_dssp --HHH---HHHHHHHTC------CCCSSHHHHHHHHHHHHHHHH--TTSSSEEEESSTTSSSCCCTTE-EEEEEES----
T ss_pred --HHH---HHHHHHhcc------cccccchhhhHHHHHHHHHHH--cCCCeEEEEcchHHhCcCcccc-cEEEEcc----
Confidence 000 000000000 010 011346899999999 8999999999999999999 77 7888887
Q ss_pred cccCCccccccCCHhHHHHHhcccCCCCCc----cccccCCC
Q psy12699 1123 LNEKGEREIDLISVSAALQIAGRAGRFNTH----FEKLAGSH 1160 (1269)
Q Consensus 1123 ~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~----g~~~~~~~ 1160 (1269)
|.+...|+||+||++|.+++ |.++.+..
T Consensus 676 ----------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 676 ----------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp ----------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ----------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 88899999999999998864 66665543
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.6e-16 Score=203.23 Aligned_cols=316 Identities=14% Similarity=0.148 Sum_probs=174.2
Q ss_pred ccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhccC--CCceeeecceeeecc-----
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDRG--TPCDLITGEEKKFIQ----- 887 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~g--~~v~~~~G~~~~~~~----- 887 (1269)
..+++.++..+||+|||+.++..+. ..+++||++| ..|+.|+.+++.++. .++...+|.......
T Consensus 253 ~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~ 331 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYE 331 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHH
Confidence 4688999999999999988743321 2567899999 778899999998754 456666665331110
Q ss_pred ---------CCCCCCCEEEEccccccC------CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh--
Q psy12699 888 ---------GEEKPANHVACTVEMTSV------NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV-- 950 (1269)
Q Consensus 888 ---------~~~~~~~Ivv~T~e~~~~------l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~-- 950 (1269)
......+|+|+|++++.. ..++++||+||||++.+. ......++..+..... ++-+.||.
T Consensus 332 ~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~~~~r-l~LTgTPiqN 408 (800)
T 3mwy_W 332 FYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFKVANR-MLITGTPLQN 408 (800)
T ss_dssp SCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSEEEEE-EEECSCCCSS
T ss_pred hhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc--hhHHHHHHHHhhhccE-EEeeCCcCCC
Confidence 122367899999996542 347999999999999542 2345556666644333 33333332
Q ss_pred --HHHHHHHHHcC-CceEEEe---cccC---------------CccccccccccccCCcCCC-CEEEEe--cHHhHHHHH
Q psy12699 951 --DLVKAIMMTTN-EDVEVYK---YKRL---------------TELQIEDSAVGSLDNIQPG-DCIVCF--SKNDVYTVS 1006 (1269)
Q Consensus 951 --~~~~~l~~~~~-~~~~v~~---~~r~---------------~~l~~~~~~~~~l~~~~~g-~~iv~~--s~~~~~~l~ 1006 (1269)
..+-.+..... ..+.... .... .+.............+++. ..++.+ +..+.....
T Consensus 409 ~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~ 488 (800)
T 3mwy_W 409 NIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK 488 (800)
T ss_dssp CSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHH
T ss_pred CHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHH
Confidence 11222222211 1111000 0000 0000000000001112222 222222 333322222
Q ss_pred HHHHhcCCceEE--------------------Ee-----------------CCCChh----------hHHHHhcccC--C
Q psy12699 1007 RGIESRGTEVAV--------------------IY-----------------GSLPPT----------TKLAQASKFN--D 1037 (1269)
Q Consensus 1007 ~~L~~~~~~~~~--------------------i~-----------------g~l~~~----------~r~~~~~~f~--~ 1037 (1269)
..+.+....... .| +..... .+...+.... .
T Consensus 489 ~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~ 568 (800)
T 3mwy_W 489 NILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRL 568 (800)
T ss_dssp HHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHH
Confidence 222211000000 00 000000 0000000000 0
Q ss_pred CCCCccchhhhhhhccCcccc-ccccCCceeEEEcCCCCHHhHHHHhhhccCC-CCCeeEEEEcCcccccccc-CceEEE
Q psy12699 1038 PDNPCKVMVATDAIGMGLNFR-GIESRGTEVAVIYGSLPPTTKLAQASKFNDP-DNPCKVMVATDAIGMGLNL-SIRRVI 1114 (1269)
Q Consensus 1038 ~~~~~~~l~~t~~~~~~~~~~-~l~~~gi~v~~~Hg~l~~~eR~~v~~~F~~~-~g~~~VLVaTdv~~~GIDi-~v~~VI 1114 (1269)
.......++++........+. .|...|+++..+||+++.++|+++++.|+.+ .+...+|++|++++.|||+ .+++||
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE
Confidence 011123344333332222222 2234688899999999999999999999932 2344699999999999999 999999
Q ss_pred EcCCCCCCcccCCccccccCCHhHHHHHhcccCCCCCcccc
Q psy12699 1115 FYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1115 ~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~G~~g~~ 1155 (1269)
++|. |.++..+.||+||++|.|++..+
T Consensus 649 ~~D~--------------~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 649 IFDS--------------DWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp ESSC--------------CSCSHHHHHHHTTTSCSSCCSCE
T ss_pred EecC--------------CCChhhHHHHHHHHHhcCCCceE
Confidence 9998 78899999999999999998766
No 58
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.69 E-value=2.1e-16 Score=199.06 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=70.9
Q ss_pred cCCceeEEEcCCCCHHhHHHHhhhccCCCCCe---eEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHh
Q psy12699 1062 SRGTEVAVIYGSLPPTTKLAQASKFNDPDNPC---KVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVS 1137 (1269)
Q Consensus 1062 ~~gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~---~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 1137 (1269)
..|+.+..+||+++.++|++++++|+ ++.. .+|++|+++++|+|+ .+++||++|+ |.+++
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~--~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~--------------~wnp~ 501 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFN--NPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP--------------DWNPA 501 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHH--STTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC--------------CSSHH
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhc--CCCCCcEEEEEecccccCCcccccCCEEEEECC--------------CCCcc
Confidence 45777899999999999999999999 5443 589999999999999 9999999998 88999
Q ss_pred HHHHHhcccCCCCCcccc
Q psy12699 1138 AALQIAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1138 ~y~QR~GRaGR~G~~g~~ 1155 (1269)
.+.||+||++|.|++..+
T Consensus 502 ~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 502 NDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp HHHHHHTTSSSTTCCSCE
T ss_pred HHHHHHHhhhhcCCCCce
Confidence 999999999999998766
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.66 E-value=3.8e-15 Score=187.40 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=77.8
Q ss_pred CceeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHH
Q psy12699 1064 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQI 1142 (1269)
Q Consensus 1064 gi~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR 1142 (1269)
|+++..+||++++.+|.++++.|+ +|+++|||||+++++|+|+ ++++||++|..++ | .|.+..+|+||
T Consensus 463 gi~~~~lh~~~~~~~R~~~~~~f~--~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~-----G----~p~s~~~~iQr 531 (664)
T 1c4o_A 463 GIRARYLHHELDAFKRQALIRDLR--LGHYDCLVGINLLREGLDIPEVSLVAILDADKE-----G----FLRSERSLIQT 531 (664)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHH--TTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC-----S----GGGSHHHHHHH
T ss_pred CCCceeecCCCCHHHHHHHHHHhh--cCCceEEEccChhhcCccCCCCCEEEEeCCccc-----C----CCCCHHHHHHH
Confidence 344778899999999999999999 9999999999999999999 9999999998665 3 27899999999
Q ss_pred hcccCCCCCccccccCCCCccc
Q psy12699 1143 AGRAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1143 ~GRaGR~G~~g~~~~~~~p~~~ 1164 (1269)
+|||||.| +|.++.+..+...
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCH
T ss_pred HCccCcCC-CCEEEEEEcCCCH
Confidence 99999985 7888777766533
No 60
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.66 E-value=1.8e-16 Score=171.25 Aligned_cols=107 Identities=22% Similarity=0.333 Sum_probs=94.2
Q ss_pred CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCcee
Q psy12699 989 QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEV 1067 (1269)
Q Consensus 989 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v 1067 (1269)
..+.++||+ ++++++.+++.|.+.+.. +
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------------------~ 58 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGHP---------------------------------------------------A 58 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTCC---------------------------------------------------E
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCC---------------------------------------------------E
Confidence 456888888 888899999888765443 7
Q ss_pred EEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhccc
Q psy12699 1068 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRA 1146 (1269)
Q Consensus 1068 ~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRa 1146 (1269)
..+||+|++++|+++++.|+ +|+.+||||||++++|+|+ ++++||++|. |.+.++|+||+|||
T Consensus 59 ~~lhg~~~~~~r~~~~~~f~--~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~--------------p~~~~~~~qr~GR~ 122 (212)
T 3eaq_A 59 QALHGDLSQGERERVLGAFR--QGEVRVLVATDVAARGLDIPQVDLVVHYRL--------------PDRAEAYQHRSGRT 122 (212)
T ss_dssp EEECSSSCHHHHHHHHHHHH--SSSCCEEEECTTTTCSSSCCCBSEEEESSC--------------CSSHHHHHHHHTTB
T ss_pred EEEECCCCHHHHHHHHHHHH--CCCCeEEEecChhhcCCCCccCcEEEECCC--------------CcCHHHHHHHhccc
Confidence 78999999999999999999 9999999999999999999 9999999998 88999999999999
Q ss_pred CCCCCccccccCCCCc
Q psy12699 1147 GRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1147 GR~G~~g~~~~~~~p~ 1162 (1269)
||.|+.|.++.+..+.
T Consensus 123 gR~g~~g~~~~l~~~~ 138 (212)
T 3eaq_A 123 GRAGRGGRVVLLYGPR 138 (212)
T ss_dssp CCCC--BEEEEEECGG
T ss_pred CCCCCCCeEEEEEchh
Confidence 9999999997776665
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.65 E-value=2.3e-16 Score=163.10 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=94.1
Q ss_pred CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCcee
Q psy12699 989 QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEV 1067 (1269)
Q Consensus 989 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v 1067 (1269)
+.+.++||+ +++.++.+++.|.+.+. ++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------------------~~ 62 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY---------------------------------------------------PC 62 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC---------------------------------------------------CE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC---------------------------------------------------cE
Confidence 445677777 88888888888766543 37
Q ss_pred EEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhccc
Q psy12699 1068 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRA 1146 (1269)
Q Consensus 1068 ~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRa 1146 (1269)
..+||+|++++|+.+++.|+ +|+.+|||||+++++|+|+ ++++||++|+ |.+..+|+||+||+
T Consensus 63 ~~~hg~~~~~~r~~~~~~f~--~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~--------------p~~~~~~~qr~GR~ 126 (163)
T 2hjv_A 63 DKIHGGMIQEDRFDVMNEFK--RGEYRYLVATDVAARGIDIENISLVINYDL--------------PLEKESYVHRTGRT 126 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHH--TTSCSEEEECGGGTTTCCCSCCSEEEESSC--------------CSSHHHHHHHTTTS
T ss_pred EEEeCCCCHHHHHHHHHHHH--cCCCeEEEECChhhcCCchhcCCEEEEeCC--------------CCCHHHHHHhcccc
Confidence 78899999999999999999 8999999999999999999 9999999998 88999999999999
Q ss_pred CCCCCccccccCCCCc
Q psy12699 1147 GRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1147 GR~G~~g~~~~~~~p~ 1162 (1269)
||.|++|.++.+..+.
T Consensus 127 ~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 127 GRAGNKGKAISFVTAF 142 (163)
T ss_dssp SCTTCCEEEEEEECGG
T ss_pred CcCCCCceEEEEecHH
Confidence 9999999997766655
No 62
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=164.10 Aligned_cols=114 Identities=19% Similarity=0.328 Sum_probs=90.1
Q ss_pred cCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCce
Q psy12699 988 IQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTE 1066 (1269)
Q Consensus 988 ~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~ 1066 (1269)
.+.+.++||+ +++.++.+++.|.+.+. .
T Consensus 32 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------------------~ 60 (175)
T 2rb4_A 32 ITIGQAIIFCQTRRNAKWLTVEMIQDGH---------------------------------------------------Q 60 (175)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHTTTC---------------------------------------------------C
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------------------c
Confidence 3455677777 88888888888766443 3
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..+||+|++++|+++++.|+ +|+.+|||||+++++|+|+ ++++||++|.+... + ...+..+|+||+||
T Consensus 61 ~~~~~g~~~~~~R~~~~~~f~--~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~----~----~~~~~~~~~qr~GR 130 (175)
T 2rb4_A 61 VSLLSGELTVEQRASIIQRFR--DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ----G----EEPDYETYLHRIGR 130 (175)
T ss_dssp EEEECSSCCHHHHHHHHHHHH--TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC------C----CSCCHHHHHHHHCB
T ss_pred EEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc----c----ccCCHHHHHHHhcc
Confidence 788999999999999999999 9999999999999999999 99999999982110 0 01789999999999
Q ss_pred cCCCCCccccccCCCCc
Q psy12699 1146 AGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1146 aGR~G~~g~~~~~~~p~ 1162 (1269)
+||.|++|.++.+..+.
T Consensus 131 ~gR~g~~g~~~~~~~~~ 147 (175)
T 2rb4_A 131 TGRFGKKGLAFNMIEVD 147 (175)
T ss_dssp C----CCEEEEEEECGG
T ss_pred cccCCCCceEEEEEccc
Confidence 99999999987666554
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=168.85 Aligned_cols=139 Identities=22% Similarity=0.132 Sum_probs=104.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------------cCCcEEEEcchHHHHHHHHHHHhcc---CCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------------SAESGVYCGPLKMLATEVFKKSNDR---GTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------------~~~~~lil~Ptr~La~Qi~~~l~~~---g~~v~~~~G~~~~ 884 (1269)
+++|+|+++++|||||||++++..+. .+++++|++|||+|+.|++++++++ +.++..++|+...
T Consensus 54 ~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 133 (228)
T 3iuy_A 54 ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNR 133 (228)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC----
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCCh
Confidence 46788999999999999988743221 4678999999999999999999875 4567777777554
Q ss_pred eccCC--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 885 FIQGE--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 885 ~~~~~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
..+.. ..+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..+..+...+..+++..+.++
T Consensus 134 ~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~ 213 (228)
T 3iuy_A 134 NGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVR 213 (228)
T ss_dssp --CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHH
Confidence 33221 125799999998443 26789999999999999888888999888888766666777777777677
Q ss_pred HHHHH
Q psy12699 955 AIMMT 959 (1269)
Q Consensus 955 ~l~~~ 959 (1269)
.+...
T Consensus 214 ~~~~~ 218 (228)
T 3iuy_A 214 QLALS 218 (228)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 76654
No 64
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=3.7e-16 Score=162.97 Aligned_cols=107 Identities=18% Similarity=0.294 Sum_probs=95.0
Q ss_pred CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCcee
Q psy12699 989 QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEV 1067 (1269)
Q Consensus 989 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v 1067 (1269)
+.+.++||+ +++.++.+++.|.+.+. ++
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------------------~~ 58 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF---------------------------------------------------PA 58 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC---------------------------------------------------CE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC---------------------------------------------------CE
Confidence 455778887 88889998888876543 37
Q ss_pred EEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhccc
Q psy12699 1068 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRA 1146 (1269)
Q Consensus 1068 ~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRa 1146 (1269)
..+||+|++++|+.+++.|+ +|+.+|||||+++++|+|+ ++++||++|. |.+.++|+||+||+
T Consensus 59 ~~~hg~~~~~~r~~~~~~f~--~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~--------------p~~~~~~~qr~GR~ 122 (172)
T 1t5i_A 59 IAIHRGMPQEERLSRYQQFK--DFQRRILVATNLFGRGMDIERVNIAFNYDM--------------PEDSDTYLHRVARA 122 (172)
T ss_dssp EEECTTSCHHHHHHHHHHHH--TTSCSEEEESSCCSTTCCGGGCSEEEESSC--------------CSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH--CCCCcEEEECCchhcCcchhhCCEEEEECC--------------CCCHHHHHHHhccc
Confidence 78899999999999999999 9999999999999999999 9999999998 88999999999999
Q ss_pred CCCCCccccccCCCCc
Q psy12699 1147 GRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1147 GR~G~~g~~~~~~~p~ 1162 (1269)
||.|+.|.++.+..|.
T Consensus 123 ~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 123 GRFGTKGLAITFVSDE 138 (172)
T ss_dssp TGGGCCCEEEEEECSH
T ss_pred ccCCCCcEEEEEEcCh
Confidence 9999999997776654
No 65
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.62 E-value=8.5e-16 Score=169.84 Aligned_cols=140 Identities=17% Similarity=0.042 Sum_probs=109.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh------------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL------------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKK 884 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~------------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~ 884 (1269)
+++|+|+++++|||||||++|+..+. .+++++|++|||+|+.|+++.++++ +.++..++|+...
T Consensus 63 ~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~ 142 (242)
T 3fe2_A 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPK 142 (242)
T ss_dssp HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCCh
Confidence 46789999999999999999843322 2678999999999999999888664 6678888887554
Q ss_pred eccCC--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 885 FIQGE--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 885 ~~~~~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
..+.. ..+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..++.+...++.+++..+.++
T Consensus 143 ~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 143 GPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 222 (242)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHH
Confidence 33221 125899999998442 37799999999999999988998999888888777667777777777777
Q ss_pred HHHHHc
Q psy12699 955 AIMMTT 960 (1269)
Q Consensus 955 ~l~~~~ 960 (1269)
.+....
T Consensus 223 ~~~~~~ 228 (242)
T 3fe2_A 223 QLAEDF 228 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 66
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.61 E-value=5.8e-16 Score=164.21 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=72.0
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..+||+|++++|+++++.|+ +|+.+|||||+++++|+|+ ++++||++|+ |.+.++|+||+||
T Consensus 81 ~~~lhg~~~~~~R~~~l~~F~--~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~--------------p~~~~~~~qr~GR 144 (191)
T 2p6n_A 81 AVAIHGGKDQEERTKAIEAFR--EGKKDVLVATDVASKGLDFPAIQHVINYDM--------------PEEIENYVHRIGR 144 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHHH--HTSCSEEEECHHHHTTCCCCCCSEEEESSC--------------CSSHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHh--cCCCEEEEEcCchhcCCCcccCCEEEEeCC--------------CCCHHHHHHHhCc
Confidence 778899999999999999999 8999999999999999999 9999999998 8899999999999
Q ss_pred cCCCCCccccccCCCCc
Q psy12699 1146 AGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1146 aGR~G~~g~~~~~~~p~ 1162 (1269)
+||.|++|.++.+..+.
T Consensus 145 ~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 145 TGCSGNTGIATTFINKA 161 (191)
T ss_dssp SCC---CCEEEEEECTT
T ss_pred cccCCCCcEEEEEEcCc
Confidence 99999999997766654
No 67
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.61 E-value=5.4e-16 Score=160.70 Aligned_cols=108 Identities=19% Similarity=0.356 Sum_probs=89.8
Q ss_pred cCCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCce
Q psy12699 988 IQPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTE 1066 (1269)
Q Consensus 988 ~~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~ 1066 (1269)
.+.+.++||+ +++.++.+++.|.+.+..
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~--------------------------------------------------- 56 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRNDKFT--------------------------------------------------- 56 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHHTTCC---------------------------------------------------
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCC---------------------------------------------------
Confidence 3456778877 888899998888765433
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..+||+|++++|+++++.|+ +|+.+|||||+++++|+|+ ++++||++|. |.+..+|.||+||
T Consensus 57 ~~~~~~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~--------------p~~~~~~~qr~GR 120 (165)
T 1fuk_A 57 VSAIYSDLPQQERDTIMKEFR--SGSSRILISTDLLARGIDVQQVSLVINYDL--------------PANKENYIHRIGR 120 (165)
T ss_dssp EEEECTTSCHHHHHHHHHHHH--TTSCSEEEEEGGGTTTCCCCSCSEEEESSC--------------CSSGGGGGGSSCS
T ss_pred EEEEECCCCHHHHHHHHHHHH--cCCCEEEEEcChhhcCCCcccCCEEEEeCC--------------CCCHHHHHHHhcc
Confidence 778899999999999999999 9999999999999999999 9999999998 8899999999999
Q ss_pred cCCCCCccccccCCCCc
Q psy12699 1146 AGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1146 aGR~G~~g~~~~~~~p~ 1162 (1269)
+||.|++|.++.+..+.
T Consensus 121 ~gR~g~~g~~~~~~~~~ 137 (165)
T 1fuk_A 121 GGRFGRKGVAINFVTNE 137 (165)
T ss_dssp CC-----CEEEEEEETT
T ss_pred cccCCCCceEEEEEcch
Confidence 99999999986665554
No 68
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.61 E-value=6.8e-16 Score=162.90 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=61.6
Q ss_pred eeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhc
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAG 1144 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~G 1144 (1269)
.+..+||+|++++|+++++.|+ +|+.+|||||+++++|+|+ ++++||++|. |.+..+|+||+|
T Consensus 72 ~~~~lhg~~~~~~r~~~~~~f~--~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~--------------p~s~~~~~Qr~G 135 (185)
T 2jgn_A 72 ACTSIHGDRSQRDREEALHQFR--SGKSPILVATAVAARGLDISNVKHVINFDL--------------PSDIEEYVHRIG 135 (185)
T ss_dssp CEEEEC--------CHHHHHHH--HTSSSEEEEEC------CCCSBSEEEESSC--------------CSSHHHHHHHHT
T ss_pred ceEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEcChhhcCCCcccCCEEEEeCC--------------CCCHHHHHHHcc
Confidence 3788899999999999999999 8999999999999999999 9999999998 889999999999
Q ss_pred ccCCCCCccccccCCCCc
Q psy12699 1145 RAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1145 RaGR~G~~g~~~~~~~p~ 1162 (1269)
|+||.|++|.++.+..+.
T Consensus 136 R~~R~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 136 RTGRVGNLGLATSFFNER 153 (185)
T ss_dssp TBCCTTSCEEEEEEECGG
T ss_pred ccCCCCCCcEEEEEEchh
Confidence 999999999997766655
No 69
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.61 E-value=6.8e-16 Score=174.78 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=91.2
Q ss_pred CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCCcee
Q psy12699 989 QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEV 1067 (1269)
Q Consensus 989 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~gi~v 1067 (1269)
..+.++||+ ++++++.+++.|.+.+. .+
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~---------------------------------------------------~~ 55 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH---------------------------------------------------PA 55 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC---------------------------------------------------CE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC---------------------------------------------------CE
Confidence 456788888 88889999888866443 37
Q ss_pred EEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhccc
Q psy12699 1068 AVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRA 1146 (1269)
Q Consensus 1068 ~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRa 1146 (1269)
..+||+|++++|+.+++.|+ +|+++||||||++++|+|+ ++++||++|. |.+.++|+||+|||
T Consensus 56 ~~lhg~l~~~~r~~~~~~f~--~g~~~vLVaT~va~~Gidi~~v~~VI~~d~--------------p~s~~~y~Qr~GRa 119 (300)
T 3i32_A 56 QALHGDMSQGERERVMGAFR--QGEVRVLVATDVAARGLDIPQVDLVVHYRM--------------PDRAEAYQHRSGRT 119 (300)
T ss_dssp EEECSCCCTHHHHHHHHHHH--HTSCCEEEECSTTTCSTTCCCCSEEEESSC--------------CSSTTHHHHHHTCC
T ss_pred EEEeCCCCHHHHHHHHHHhh--cCCceEEEEechhhcCccccceeEEEEcCC--------------CCCHHHHHHHccCc
Confidence 88999999999999999999 9999999999999999999 9999999998 88899999999999
Q ss_pred CCCCCccccccCCCCcc
Q psy12699 1147 GRFNTHFEKLAGSHPAL 1163 (1269)
Q Consensus 1147 GR~G~~g~~~~~~~p~~ 1163 (1269)
||.|+.|.++.+..|..
T Consensus 120 gR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 120 GRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp C-----CEEEEEECSST
T ss_pred CcCCCCceEEEEeChHH
Confidence 99999999977776653
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=172.42 Aligned_cols=139 Identities=18% Similarity=0.127 Sum_probs=108.7
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-----------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-----------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKF 885 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-----------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~ 885 (1269)
+++|+|+++++|||||||++|+..+. .+.+++|++|||+||.|++++++++ +..+...+|+....
T Consensus 88 ~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 167 (262)
T 3ly5_A 88 LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS 167 (262)
T ss_dssp HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHH
T ss_pred HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHH
Confidence 56789999999999999999843332 3778999999999999999999774 34667777775543
Q ss_pred ccCC--CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHH
Q psy12699 886 IQGE--EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVK 954 (1269)
Q Consensus 886 ~~~~--~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~ 954 (1269)
.+.. ..+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.++
T Consensus 168 ~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~ 247 (262)
T 3ly5_A 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVE 247 (262)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHH
T ss_pred HHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHH
Confidence 3221 125899999988432 26789999999999999988998888888888777667777788777777
Q ss_pred HHHHH
Q psy12699 955 AIMMT 959 (1269)
Q Consensus 955 ~l~~~ 959 (1269)
.+...
T Consensus 248 ~~~~~ 252 (262)
T 3ly5_A 248 DLARI 252 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=3.1e-15 Score=160.85 Aligned_cols=144 Identities=15% Similarity=0.019 Sum_probs=105.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~ 888 (1269)
+++|+|+++++|||+|||++++..+.. +.+++|++|||+|+.|++++++++ +.++...+|+....++.
T Consensus 37 ~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 116 (206)
T 1vec_A 37 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI 116 (206)
T ss_dssp HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH
T ss_pred HccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH
Confidence 467889999999999999888433322 468999999999999999998764 44667777765432221
Q ss_pred --CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 --EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 --~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
...+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.+.++..
T Consensus 117 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 117 MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHH
T ss_pred HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHH
Confidence 1236899999998442 267899999999999988888888888887776555556666666666666554
Q ss_pred H-cCCce
Q psy12699 959 T-TNEDV 964 (1269)
Q Consensus 959 ~-~~~~~ 964 (1269)
. ..+++
T Consensus 197 ~~l~~p~ 203 (206)
T 1vec_A 197 SHLEKPY 203 (206)
T ss_dssp HHCSSCE
T ss_pred HHcCCCe
Confidence 3 34433
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=169.29 Aligned_cols=138 Identities=17% Similarity=-0.016 Sum_probs=103.2
Q ss_pred ccC--CceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhccC-----CCceeeecceeeecc
Q psy12699 822 YCG--PLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDRG-----TPCDLITGEEKKFIQ 887 (1269)
Q Consensus 822 ~~g--~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~g-----~~v~~~~G~~~~~~~ 887 (1269)
++| +|++++||||||||++|+..++. +++++|++|||+||.|+++.+++++ ..+...+|+......
T Consensus 127 l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T 3fmo_B 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG 206 (300)
T ss_dssp TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT
T ss_pred HcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh
Confidence 555 89999999999999988443332 4589999999999999998887653 356666776543222
Q ss_pred CCCCCCCEEEEcccccc---------CCCCeeEEEEeccccccc-CCchhHHHHHHhccCcceEEEEeecCChHHHHHHH
Q psy12699 888 GEEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRD-ITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIM 957 (1269)
Q Consensus 888 ~~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d-~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~ 957 (1269)
....++|+|+||+.+. .+.+++++||||||++.+ .+++.....++..++.....++.+++..+.+..++
T Consensus 207 -~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 207 -QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp -CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHH
T ss_pred -hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHH
Confidence 2447899999988431 267999999999999987 56666667777777777777778888877777777
Q ss_pred HHc
Q psy12699 958 MTT 960 (1269)
Q Consensus 958 ~~~ 960 (1269)
...
T Consensus 286 ~~~ 288 (300)
T 3fmo_B 286 QKV 288 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.59 E-value=2.4e-15 Score=163.56 Aligned_cols=146 Identities=16% Similarity=0.097 Sum_probs=105.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc--------CCCceeeecceeee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR--------GTPCDLITGEEKKF 885 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~--------g~~v~~~~G~~~~~ 885 (1269)
+++|+|+++++|||||||++++..+. .+.+++|++|||+|+.|++++++++ +..+...+|+....
T Consensus 38 ~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 38 ALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp HHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 36789999999999999998743332 2568999999999999999988664 45666777775543
Q ss_pred ccCCC--CCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHH
Q psy12699 886 IQGEE--KPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 886 ~~~~~--~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~ 955 (1269)
.+.+. .+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.+++
T Consensus 118 ~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~ 197 (219)
T 1q0u_A 118 KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKP 197 (219)
T ss_dssp HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHH
T ss_pred HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHH
Confidence 33222 26899999988432 267899999999999988888888888887776655555555655555555
Q ss_pred HHHH-cCCceEE
Q psy12699 956 IMMT-TNEDVEV 966 (1269)
Q Consensus 956 l~~~-~~~~~~v 966 (1269)
+... ..++..+
T Consensus 198 ~~~~~~~~p~~~ 209 (219)
T 1q0u_A 198 FLKKYMENPTFV 209 (219)
T ss_dssp HHHHHCSSCEEE
T ss_pred HHHHHcCCCeEE
Confidence 5544 3444443
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=164.66 Aligned_cols=140 Identities=20% Similarity=0.158 Sum_probs=106.3
Q ss_pred cccCCceEEeccCCCCchHHHHHH----H-------hcCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeee
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----F-------LSAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKF 885 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l-------~~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~ 885 (1269)
+++|+|+++++|||||||++++.. + ..+.+++|++|||+|+.|+++++++++ .++...+|+....
T Consensus 59 ~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 138 (236)
T 2pl3_A 59 ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLK 138 (236)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CH
T ss_pred HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHH
Confidence 467899999999999999987322 2 136789999999999999999998755 4677777775433
Q ss_pred ccC-CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHH
Q psy12699 886 IQG-EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKA 955 (1269)
Q Consensus 886 ~~~-~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~ 955 (1269)
.+. ...+++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.+++
T Consensus 139 ~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~ 218 (236)
T 2pl3_A 139 HEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKD 218 (236)
T ss_dssp HHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHH
T ss_pred HHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHH
Confidence 221 1126899999988442 257899999999999988888888888888887666666677777777777
Q ss_pred HHHHc
Q psy12699 956 IMMTT 960 (1269)
Q Consensus 956 l~~~~ 960 (1269)
+....
T Consensus 219 ~~~~~ 223 (236)
T 2pl3_A 219 LARLS 223 (236)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77553
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=166.05 Aligned_cols=145 Identities=17% Similarity=0.069 Sum_probs=108.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----c---CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----S---AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQG- 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----~---~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~- 888 (1269)
+++|+|+++++|||||||++++..+. . +.+++|++|||+|+.|++++++++ +.++..++|+.....+.
T Consensus 77 i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (249)
T 3ber_A 77 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 156 (249)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH
T ss_pred HhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHH
Confidence 46789999999999999998843332 2 467999999999999999888764 66788888875433221
Q ss_pred -CCCCCCEEEEcccccc---------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 -EEKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
...+++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.++++..
T Consensus 157 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHH
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHH
Confidence 1236899999988442 267899999999999988888888888888887666666667777776777765
Q ss_pred H-cCCceE
Q psy12699 959 T-TNEDVE 965 (1269)
Q Consensus 959 ~-~~~~~~ 965 (1269)
. ..+++.
T Consensus 237 ~~l~~p~~ 244 (249)
T 3ber_A 237 AALKNPVK 244 (249)
T ss_dssp HHCSSCEE
T ss_pred HHCCCCEE
Confidence 4 344443
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.58 E-value=9.1e-15 Score=159.41 Aligned_cols=146 Identities=16% Similarity=0.034 Sum_probs=103.3
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeeccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~~~ 889 (1269)
+++|+|+++++|||+|||++++..+. .+++++|++|||+|+.|++++++++ +.++...+|+....++..
T Consensus 48 ~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (224)
T 1qde_A 48 IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127 (224)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC---------
T ss_pred HhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh
Confidence 46789999999999999988733322 2568999999999999999998764 456677777765443332
Q ss_pred C-CCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHHH-
Q psy12699 890 E-KPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMT- 959 (1269)
Q Consensus 890 ~-~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~~- 959 (1269)
. ..++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.++++...
T Consensus 128 ~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 207 (224)
T 1qde_A 128 GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKF 207 (224)
T ss_dssp -CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHH
Confidence 2 25899999988542 2678999999999999888888888888777766655666666666666666654
Q ss_pred cCCceEE
Q psy12699 960 TNEDVEV 966 (1269)
Q Consensus 960 ~~~~~~v 966 (1269)
..++..+
T Consensus 208 ~~~p~~i 214 (224)
T 1qde_A 208 MRNPVRI 214 (224)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 3444443
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.57 E-value=8.3e-15 Score=184.25 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=77.2
Q ss_pred eeEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhc
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAG 1144 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~G 1144 (1269)
++..+||++++.+|.++++.|+ +|+++|||||+++++|+|+ ++++||+++..++ | .|.+..+|+||+|
T Consensus 471 ~~~~lh~~~~~~~R~~~l~~f~--~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-----G----~p~s~~~~iQr~G 539 (661)
T 2d7d_A 471 KVNYLHSEIKTLERIEIIRDLR--LGKYDVLVGINLLREGLDIPEVSLVAILDADKE-----G----FLRSERSLIQTIG 539 (661)
T ss_dssp CEEEECTTCCHHHHHHHHHHHH--HTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC-----T----TTTSHHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHh--cCCeEEEEecchhhCCcccCCCCEEEEeCcccc-----c----CCCCHHHHHHHhC
Confidence 3777899999999999999999 8999999999999999999 9999999998665 3 2788999999999
Q ss_pred ccCCCCCccccccCCCCccc
Q psy12699 1145 RAGRFNTHFEKLAGSHPALN 1164 (1269)
Q Consensus 1145 RaGR~G~~g~~~~~~~p~~~ 1164 (1269)
||||. .+|.++.+..+...
T Consensus 540 RagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 540 RAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp TTTTS-TTCEEEEECSSCCH
T ss_pred cccCC-CCCEEEEEEeCCCH
Confidence 99998 78999777776543
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=3.3e-15 Score=163.73 Aligned_cols=139 Identities=13% Similarity=0.070 Sum_probs=102.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~ 888 (1269)
+++|+|+++++|||+|||++++..+. .+++++|++|||+|+.|++++++++ +.++...+|+.....+.
T Consensus 58 ~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 137 (230)
T 2oxc_A 58 GRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK 137 (230)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHH
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHH
Confidence 46789999999999999998733322 1478999999999999999999775 45677788875432221
Q ss_pred -CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCC-chhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 -EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDIT-RGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 -~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~-rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
...+++|+|+||+.+. .+.+++++|+||||++.+.+ ++..+..++..++.....+..+++..+.++++..
T Consensus 138 ~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~ 217 (230)
T 2oxc_A 138 TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALT 217 (230)
T ss_dssp HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHT
T ss_pred HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHH
Confidence 1126899999998442 26789999999999998876 7777777877776555555666666666666654
Q ss_pred H
Q psy12699 959 T 959 (1269)
Q Consensus 959 ~ 959 (1269)
.
T Consensus 218 ~ 218 (230)
T 2oxc_A 218 K 218 (230)
T ss_dssp T
T ss_pred H
Confidence 3
No 79
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.55 E-value=1.1e-14 Score=160.37 Aligned_cols=139 Identities=17% Similarity=0.032 Sum_probs=100.9
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-------cCCcEEEEcchHHHHHHHHHHHhccC----CCceeeecceeeeccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-------SAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-------~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G~~~~~~~~~ 889 (1269)
+++|+|+++++|||||||++++..+. .+.+++|++|||+|+.|+++++++++ ..+...+|+.....+..
T Consensus 64 i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 143 (237)
T 3bor_A 64 CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143 (237)
T ss_dssp HHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHH
Confidence 46789999999999999998843332 25699999999999999999997754 45666677655433322
Q ss_pred C---CCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 890 E---KPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 890 ~---~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
. ..++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.++++..
T Consensus 144 ~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp ----CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 1 24899999987432 267899999999999988888877888777776666666677777766776665
Q ss_pred H
Q psy12699 959 T 959 (1269)
Q Consensus 959 ~ 959 (1269)
.
T Consensus 224 ~ 224 (237)
T 3bor_A 224 K 224 (237)
T ss_dssp H
T ss_pred H
Confidence 4
No 80
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.32 E-value=3.8e-16 Score=162.66 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=74.3
Q ss_pred eEEEcCCCCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGR 1145 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GR 1145 (1269)
+..+||+|++++|+++++.|+ +|+.+|||||+++++|+|+ ++++||++|. |.+..+|+||+||
T Consensus 57 ~~~~~g~~~~~~r~~~~~~f~--~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~--------------p~~~~~~~qr~GR 120 (170)
T 2yjt_D 57 NCYLEGEMVQGKRNEAIKRLT--EGRVNVLVATDVAARGIDIPDVSHVFNFDM--------------PRSGDTYLHRIGR 120 (170)
Confidence 677899999999999999999 9999999999999999999 9999999998 8899999999999
Q ss_pred cCCCCCccccccCCCCc
Q psy12699 1146 AGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1146 aGR~G~~g~~~~~~~p~ 1162 (1269)
+||.|++|.++.+..+.
T Consensus 121 ~~R~g~~g~~~~~~~~~ 137 (170)
T 2yjt_D 121 TARAGRKGTAISLVEAH 137 (170)
Confidence 99999999986665554
No 81
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=1.2e-14 Score=161.82 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=103.2
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----------------cCCcEEEEcchHHHHHHHHHHHhccC----CCceeeec
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----------------SAESGVYCGPLKMLATEVFKKSNDRG----TPCDLITG 880 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----------------~~~~~lil~Ptr~La~Qi~~~l~~~g----~~v~~~~G 880 (1269)
+++|+|+++++|||||||++++..+. .+++++|++|||+|+.|+++++++++ ..+..++|
T Consensus 57 i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 136 (253)
T 1wrb_A 57 ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG 136 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEEC
Confidence 47789999999999999998843322 13589999999999999999987643 45666777
Q ss_pred ceeeeccC--CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhc--cCc--ceEEEEee
Q psy12699 881 EEKKFIQG--EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLG--LMA--KEIHVCGE 946 (1269)
Q Consensus 881 ~~~~~~~~--~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~--l~~--~~~~l~~s 946 (1269)
+.....+. ...+++|+|+||+.+. .+.+++++|+||||++.+.+++..+..++.. ++. ....+..+
T Consensus 137 ~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~S 216 (253)
T 1wrb_A 137 GADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFS 216 (253)
T ss_dssp SSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEE
T ss_pred CCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEE
Confidence 65433221 1236899999988443 2678999999999999988888888888764 333 44556666
Q ss_pred cCChHHHHHHHHHc
Q psy12699 947 AGAVDLVKAIMMTT 960 (1269)
Q Consensus 947 ~~~~~~~~~l~~~~ 960 (1269)
++..+.++++....
T Consensus 217 AT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 217 ATFPKEIQKLAADF 230 (253)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 77777777776543
No 82
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=158.77 Aligned_cols=147 Identities=16% Similarity=0.059 Sum_probs=100.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh--------cCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL--------SAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ- 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~--------~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~- 887 (1269)
+++|+|+++++|||||||++|+..+. .+.+++|++|||+|+.|++++++++ +.++...+|+......
T Consensus 63 ~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (245)
T 3dkp_A 63 MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF 142 (245)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh
Confidence 46789999999999999998843332 2568999999999999999999875 4455556554332221
Q ss_pred --CCCCCCCEEEEcccccc----------CCCCeeEEEEecccccccC---CchhHHHHHHhccC-cceEEEEeecCChH
Q psy12699 888 --GEEKPANHVACTVEMTS----------VNIPYEVAVIDEIQMMRDI---TRGWAWTRALLGLM-AKEIHVCGEAGAVD 951 (1269)
Q Consensus 888 --~~~~~~~Ivv~T~e~~~----------~l~~~~~lViDEah~~~d~---~rg~~~~~~ll~l~-~~~~~l~~s~~~~~ 951 (1269)
....+++|+|+||+.+. .+.+++++|+||||++.+. ++...+..++..+. .+...++.+++..+
T Consensus 143 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 12337899999988442 2678999999999999773 33344455554443 23445556666666
Q ss_pred HHHHHHHH-cCCceEEE
Q psy12699 952 LVKAIMMT-TNEDVEVY 967 (1269)
Q Consensus 952 ~~~~l~~~-~~~~~~v~ 967 (1269)
.++.+... ..+++.+.
T Consensus 223 ~v~~~~~~~l~~p~~i~ 239 (245)
T 3dkp_A 223 DVEQWCKLNLDNVISVS 239 (245)
T ss_dssp HHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 67776654 34444443
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.54 E-value=9.4e-15 Score=157.11 Aligned_cols=139 Identities=19% Similarity=0.033 Sum_probs=103.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh----------cCCcEEEEcchHHHHHHHHHHHhccC--CCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL----------SAESGVYCGPLKMLATEVFKKSNDRG--TPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~----------~~~~~lil~Ptr~La~Qi~~~l~~~g--~~v~~~~G~~~~~~~~ 888 (1269)
+++|+|+++.+|||+|||++++..+. .+++++|++|||+|+.|++++++++. .++...+|+.....+.
T Consensus 35 ~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
T 2gxq_A 35 ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQK 114 (207)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHH
T ss_pred HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHH
Confidence 46678888888888888887633221 25789999999999999999998764 3566677765432211
Q ss_pred C--CCCCCEEEEcccccc--------CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCChHHHHHHHH
Q psy12699 889 E--EKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMM 958 (1269)
Q Consensus 889 ~--~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l~~ 958 (1269)
+ ..+++|+|+|++.+. .+.+++++|+||||++.+.+++..+..++..++.....+..+++..+.++++..
T Consensus 115 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 194 (207)
T 2gxq_A 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAE 194 (207)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHH
T ss_pred HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHH
Confidence 1 126899999987442 267899999999999988888888888887776666666667777776777765
Q ss_pred H
Q psy12699 959 T 959 (1269)
Q Consensus 959 ~ 959 (1269)
.
T Consensus 195 ~ 195 (207)
T 2gxq_A 195 R 195 (207)
T ss_dssp H
T ss_pred H
Confidence 4
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.52 E-value=1.2e-14 Score=157.95 Aligned_cols=139 Identities=12% Similarity=-0.044 Sum_probs=98.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-------CCcEEEEcchHHHHHHHHHHHhcc-----CCCceeeecceeeeccC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-------AESGVYCGPLKMLATEVFKKSNDR-----GTPCDLITGEEKKFIQG 888 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-------~~~~lil~Ptr~La~Qi~~~l~~~-----g~~v~~~~G~~~~~~~~ 888 (1269)
+++|+|+++++|||+|||++++..+.. +.+++|++|||+|+.|++++++++ +.++...+|+.....+.
T Consensus 48 ~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 127 (220)
T 1t6n_A 48 AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 127 (220)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH
T ss_pred HhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH
Confidence 366889999999999999888443332 358999999999999999998775 56777788875432221
Q ss_pred ---CCCCCCEEEEcccccc--------CCCCeeEEEEecccccccC-CchhHHHHHHhccCcceEEEEeecCChHHHHHH
Q psy12699 889 ---EEKPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDI-TRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAI 956 (1269)
Q Consensus 889 ---~~~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~-~rg~~~~~~ll~l~~~~~~l~~s~~~~~~~~~l 956 (1269)
....++|+|+|++.+. .+.+++++|+||||++.+. ++...+..++..++.....+..++++.+.++++
T Consensus 128 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 207 (220)
T 1t6n_A 128 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 207 (220)
T ss_dssp HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHH
T ss_pred HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHH
Confidence 1124699999988442 3678999999999999753 444455566666655555555566665555555
Q ss_pred HHH
Q psy12699 957 MMT 959 (1269)
Q Consensus 957 ~~~ 959 (1269)
...
T Consensus 208 ~~~ 210 (220)
T 1t6n_A 208 CRK 210 (220)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.35 E-value=2.5e-12 Score=158.50 Aligned_cols=102 Identities=21% Similarity=0.107 Sum_probs=78.5
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCCCCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~~~~ 892 (1269)
+++|+ ++.++||+|||+++..++ +.+.+++|++||++||.|+++.+.. +|.++++++|+...........
T Consensus 91 LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~ 168 (997)
T 2ipc_A 91 LHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYL 168 (997)
T ss_dssp HHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHT
T ss_pred ccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcC
Confidence 35677 999999999999983322 3478999999999999999988754 6889999999865433323337
Q ss_pred CCEEEEcccccc---------------CCC---CeeEEEEecccccc-cCC
Q psy12699 893 ANHVACTVEMTS---------------VNI---PYEVAVIDEIQMMR-DIT 924 (1269)
Q Consensus 893 ~~Ivv~T~e~~~---------------~l~---~~~~lViDEah~~~-d~~ 924 (1269)
++|+|+|+..+. .++ +++++||||+|.++ |..
T Consensus 169 ~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDea 219 (997)
T 2ipc_A 169 ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEA 219 (997)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSST
T ss_pred CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCC
Confidence 899999976431 255 89999999999986 443
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.32 E-value=2.2e-12 Score=158.98 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=50.1
Q ss_pred ccccCCceEEeccCCCCchHHHHHH-HhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER-FLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGE 881 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~-l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~ 881 (1269)
.+.+|+++++.||||+|||++++.. +..+++++|++||++|+.|+.+++.+++.++..+.|.
T Consensus 22 ~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~gr 84 (540)
T 2vl7_A 22 ALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIGK 84 (540)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC---
T ss_pred HHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecCC
Confidence 3567899999999999999998443 4458899999999999999999998877766666553
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=139.77 Aligned_cols=131 Identities=18% Similarity=0.120 Sum_probs=76.6
Q ss_pred ccCCceEEeccCCCCchHHHH----HHHhc-----CCcEEEEcchHHHHHHHHHHHhc-cCCCceeeecceeeeccCC-C
Q psy12699 822 YCGPLKIHAGPTNSGKTYHAL----ERFLS-----AESGVYCGPLKMLATEVFKKSND-RGTPCDLITGEEKKFIQGE-E 890 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l----~~l~~-----~~~~lil~Ptr~La~Qi~~~l~~-~g~~v~~~~G~~~~~~~~~-~ 890 (1269)
.+|++++++||||||||.++. ..... +.++++++|+|+|+.|+++++.+ ++..++...|.....+... .
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPR 153 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCC
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCC
Confidence 345555555555555554331 11111 24789999999999999999854 5555555555433322222 2
Q ss_pred CCCCEEEEcccccc-----CCCCeeEEEEeccccc-ccCCchh-HHHHHHhccCcceEEEEeecCChHH
Q psy12699 891 KPANHVACTVEMTS-----VNIPYEVAVIDEIQMM-RDITRGW-AWTRALLGLMAKEIHVCGEAGAVDL 952 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~-----~l~~~~~lViDEah~~-~d~~rg~-~~~~~ll~l~~~~~~l~~s~~~~~~ 952 (1269)
..++|+|||++.+. .+++++++|+||||++ .+.++.. .+..++...+..++.+++++.+.+.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 36889999987432 4889999999999996 4443332 2233333333334444444434333
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=139.27 Aligned_cols=104 Identities=17% Similarity=0.066 Sum_probs=69.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc----------CCcEEEEcchHHHHHH-HHHHHhcc---CCCceeeecceeeec
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS----------AESGVYCGPLKMLATE-VFKKSNDR---GTPCDLITGEEKKFI 886 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~----------~~~~lil~Ptr~La~Q-i~~~l~~~---g~~v~~~~G~~~~~~ 886 (1269)
+++++++++.+|||+|||++++..+.. +.+++|++|+++|+.| +.+.++++ +.++...+|+.....
T Consensus 45 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 45 ALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKI 124 (216)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCC
T ss_pred HhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccch
Confidence 356789999999999999988433321 5799999999999999 65556553 457777777654322
Q ss_pred cCC--CCCCCEEEEcccccc--------------CCCCeeEEEEecccccccCC
Q psy12699 887 QGE--EKPANHVACTVEMTS--------------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 887 ~~~--~~~~~Ivv~T~e~~~--------------~l~~~~~lViDEah~~~d~~ 924 (1269)
... ...++|+|+|++.+. .+.+++++|+||||++.+.+
T Consensus 125 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 178 (216)
T 3b6e_A 125 SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 178 (216)
T ss_dssp CHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------
T ss_pred hHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC
Confidence 110 114899999988542 25789999999999997643
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.25 E-value=1.1e-11 Score=139.97 Aligned_cols=124 Identities=15% Similarity=0.022 Sum_probs=87.4
Q ss_pred ccCCceEEeccCCCCchHHHHHHHh----c-CCcEEEEcchHHHHHHHHHHHhccCC----CceeeecceeeeccCCCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALERFL----S-AESGVYCGPLKMLATEVFKKSNDRGT----PCDLITGEEKKFIQGEEKP 892 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~l~----~-~~~~lil~Ptr~La~Qi~~~l~~~g~----~v~~~~G~~~~~~~~~~~~ 892 (1269)
+++++.++++|||+|||++++..+. + ..+++|++||++|+.|+++++++++. .+..+.|+..... .....
T Consensus 126 l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (282)
T 1rif_A 126 LVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-KYKND 204 (282)
T ss_dssp HHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-CCCTT
T ss_pred HhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-hhccC
Confidence 4457788899999999998843332 2 34999999999999999999988764 3344555533221 11246
Q ss_pred CCEEEEcccccc-----CCCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCCh
Q psy12699 893 ANHVACTVEMTS-----VNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAV 950 (1269)
Q Consensus 893 ~~Ivv~T~e~~~-----~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~~ 950 (1269)
.+|+|+|++.+. .+.+++++|+||||++.+ ..+..++..+......+..++++.
T Consensus 205 ~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp CSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCC
T ss_pred CcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCC
Confidence 899999988443 367999999999999964 366667666644444455455543
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.24 E-value=1.8e-11 Score=134.42 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=85.1
Q ss_pred cccCCceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccCCC-ceeeecceeeeccCCCCCCCEEEE
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRGTP-CDLITGEEKKFIQGEEKPANHVAC 898 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~~-v~~~~G~~~~~~~~~~~~~~Ivv~ 898 (1269)
+++++++++++|||+|||.+++..+.. +.+++|++|+++|+.|+++++++++.+ +..++|+... ..+|+|+
T Consensus 105 ~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------~~~i~v~ 177 (237)
T 2fz4_A 105 WLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------LKPLTVS 177 (237)
T ss_dssp HTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------CCSEEEE
T ss_pred HHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------cCCEEEE
Confidence 456778999999999999998555444 789999999999999999999888877 7878877432 5789999
Q ss_pred ccccccC-----CCCeeEEEEecccccccCCchhHHHHHHhccCcceE
Q psy12699 899 TVEMTSV-----NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEI 941 (1269)
Q Consensus 899 T~e~~~~-----l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~ 941 (1269)
|++.+.. ..+++++||||+|++.+. .+..++..+.....
T Consensus 178 T~~~l~~~~~~~~~~~~llIiDEaH~l~~~----~~~~i~~~~~~~~~ 221 (237)
T 2fz4_A 178 TYDSAYVNAEKLGNRFMLLIFDEVHHLPAE----SYVQIAQMSIAPFR 221 (237)
T ss_dssp EHHHHHHTHHHHTTTCSEEEEECSSCCCTT----THHHHHHTCCCSEE
T ss_pred eHHHHHhhHHHhcccCCEEEEECCccCCCh----HHHHHHHhccCCEE
Confidence 9885432 357999999999999764 34455444444333
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.08 E-value=1e-10 Score=130.65 Aligned_cols=75 Identities=31% Similarity=0.432 Sum_probs=54.5
Q ss_pred ceeEEEcCCCCHHhHHHHhhhccCCCC-Cee-EEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHH
Q psy12699 1065 TEVAVIYGSLPPTTKLAQASKFNDPDN-PCK-VMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQ 1141 (1269)
Q Consensus 1065 i~v~~~Hg~l~~~eR~~v~~~F~~~~g-~~~-VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~Q 1141 (1269)
+++..+||++++++|+++++.|+ ++ ..+ +|++|+++++|+|+ .+++||++|+ |.+++.|.|
T Consensus 138 ~~~~~l~G~~~~~~R~~~i~~F~--~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~--------------~wnp~~~~Q 201 (271)
T 1z5z_A 138 TEVPFLYGELSKKERDDIISKFQ--NNPSVKFIVLSVKAGGFGINLTSANRVIHFDR--------------WWNPAVEDQ 201 (271)
T ss_dssp SCCCEECTTSCHHHHHHHHHHHH--HCTTCCEEEEECCTTCCCCCCTTCSEEEECSC--------------CSCTTTC--
T ss_pred CcEEEEECCCCHHHHHHHHHHhc--CCCCCCEEEEehhhhcCCcCcccCCEEEEECC--------------CCChhHHHH
Confidence 34677899999999999999999 55 566 79999999999999 9999999998 889999999
Q ss_pred HhcccCCCCCcccc
Q psy12699 1142 IAGRAGRFNTHFEK 1155 (1269)
Q Consensus 1142 R~GRaGR~G~~g~~ 1155 (1269)
|+||++|.|+++.+
T Consensus 202 ~~gR~~R~Gq~~~v 215 (271)
T 1z5z_A 202 ATDRVYRIGQTRNV 215 (271)
T ss_dssp ------------CC
T ss_pred HHHhccccCCCCce
Confidence 99999999998876
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.74 E-value=7.8e-09 Score=127.81 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=78.1
Q ss_pred ccccCCceEEeccCCCCchHHHHHH-HhcCCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc-------
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER-FLSAESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ------- 887 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~-l~~~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~------- 887 (1269)
.+.+|+++++.||||+|||++++.. +..+.+++|++||++|+.|+.+++..+ +.++..+.|....-..
T Consensus 18 ~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~ 97 (551)
T 3crv_A 18 GLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAES 97 (551)
T ss_dssp HHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCG
T ss_pred HHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCC
Confidence 4578999999999999999999544 445889999999999999999999875 4566666664321000
Q ss_pred ----------------------------------------------CCCCCCCEEEEcccccc---------CCCCeeEE
Q psy12699 888 ----------------------------------------------GEEKPANHVACTVEMTS---------VNIPYEVA 912 (1269)
Q Consensus 888 ----------------------------------------------~~~~~~~Ivv~T~e~~~---------~l~~~~~l 912 (1269)
.....++|+|+|+..+. ...+.+++
T Consensus 98 ~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~v 177 (551)
T 3crv_A 98 EDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMI 177 (551)
T ss_dssp GGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEE
T ss_pred cccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEE
Confidence 00125799999976221 23577899
Q ss_pred EEecccccccCCch
Q psy12699 913 VIDEIQMMRDITRG 926 (1269)
Q Consensus 913 ViDEah~~~d~~rg 926 (1269)
||||||++.| .+.
T Consensus 178 IiDEAHnl~d-~~~ 190 (551)
T 3crv_A 178 VIDEAHNLDK-VNE 190 (551)
T ss_dssp EETTGGGGGG-GGG
T ss_pred EEecccchHH-HHH
Confidence 9999999988 643
No 93
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.47 E-value=8.1e-08 Score=120.03 Aligned_cols=124 Identities=55% Similarity=0.893 Sum_probs=115.8
Q ss_pred ccccchhhhhhhcccccCCccchhhhcccCccceeccCCcchHHHHHHHHHhcCCceEEEeecccCcccccccccCCCCC
Q psy12699 366 TNEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDN 445 (1269)
Q Consensus 366 ~~dvavidEiq~~~d~~Rg~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 445 (1269)
.++..++||.++..+.++|+.|+..+.++++.++++|+..+..+.+++++..+|++++|+.|.|..|+.+....+..+.+
T Consensus 239 ~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~ 318 (677)
T 3rc3_A 239 PYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDN 318 (677)
T ss_dssp CEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSCCCSGGG
T ss_pred cCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHHHHHHHHHHh
Confidence 35778899999999999999999999999999999999999999999999999999999999999999998888788999
Q ss_pred CCCCCEEEEEehhhHHhhhhhhcc-ccceEEEEeccchhhhhccc
Q psy12699 446 IQPGDCIVCFSKNDVYTHQGVYTL-GAEWSLGIGTSSKVLVRNKK 489 (1269)
Q Consensus 446 ~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 489 (1269)
+++||+|+++||+++..+++.++. +.++.++.|.|+++.|+.+.
T Consensus 319 ~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 319 LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHH
Confidence 999999999999999999999988 88999999999999877653
No 94
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.46 E-value=0.00011 Score=72.05 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=50.4
Q ss_pred HHHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeec
Q psy12699 135 PFIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALN 201 (1269)
Q Consensus 135 ~l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~ 201 (1269)
.+++.++.++.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34578889999999999999998888 89999999999999999999999999999999999887653
No 95
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.41 E-value=0.00011 Score=69.61 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHhhhccccccccchhHHHHH-HHhHHHHHHHHHHHHhcccCCcceehhhHHHhhhceeeeecC
Q psy12699 135 PFIYLGNMVFGLGGTKELSLPMFTML-RRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND 202 (1269)
Q Consensus 135 ~l~~~~~~~~~~~sL~~is~s~~~~i-~~~~Pift~lls~l~~~ek~~~~~~~~i~l~~~Gv~l~~~~~ 202 (1269)
.+++.++..+...+++++|++.+..+ ..+.|+++.++++++++|++++.++++++++++|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34578888888999999999999888 899999999999999999999999999999999998876543
No 96
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.36 E-value=0.00023 Score=69.79 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHhhhccCccchhhh-hhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhhc
Q psy12699 295 SIMLCTQYNSALTTTII-GCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIVT 354 (1269)
Q Consensus 295 ~~~~~i~~~s~~t~sv~-~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~~ 354 (1269)
+..+++++.++..+..+ ..+.+++++++|+++|||+. ++.+++|++++++|+++.+..+
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l-s~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL-DLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhcCC
Confidence 35678999999988777 89999999999999999954 9999999999999999987543
No 97
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.32 E-value=0.00012 Score=91.06 Aligned_cols=52 Identities=25% Similarity=0.155 Sum_probs=43.6
Q ss_pred cccccCCceEEeccCCCCchHHHHHHHh-----cCCcEEEEcchHHHHHHHHHHHhc
Q psy12699 819 SGVYCGPLKIHAGPTNSGKTYHALERFL-----SAESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 819 ~~l~~g~~vlv~apTGsGKTl~~l~~l~-----~~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
+.+.+|+++++.||||+|||++++.... .+.+++|++||++|+.|+.+.+..
T Consensus 17 ~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 17 SSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp HHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH
Confidence 3457799999999999999999844333 278999999999999999988765
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.10 E-value=0.00052 Score=85.33 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=63.0
Q ss_pred ccCCceEEeccCCCCchHHH--H-HHHh-----cCCcEEEEcchHHHHHHHHHHHhc----cCCCceeeecceeeeccCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA--L-ERFL-----SAESGVYCGPLKMLATEVFKKSND----RGTPCDLITGEEKKFIQGE 889 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~--l-~~l~-----~~~~~lil~Ptr~La~Qi~~~l~~----~g~~v~~~~G~~~~~~~~~ 889 (1269)
+.++.+++.+|+|+|||.+. + ..+. .+.++++++||+++|.++.+.+.. .+.......+- . ..
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~----~-~~ 236 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI----P-ED 236 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSC----S-CC
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhcc----c-hh
Confidence 45677888888888887433 2 2222 246899999999999999887753 22211110000 0 00
Q ss_pred CCCCCEEE-Ecccc------ccCCCCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeecC
Q psy12699 890 EKPANHVA-CTVEM------TSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEAG 948 (1269)
Q Consensus 890 ~~~~~Ivv-~T~e~------~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~~ 948 (1269)
....+-++ .+++. .....+++++|||||+++ | ...+..++..++. .++.++|...
T Consensus 237 ~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~~ 299 (608)
T 1w36_D 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDRD 299 (608)
T ss_dssp CBTTTSCC-----------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECTT
T ss_pred hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcchh
Confidence 00011111 11110 011237899999999966 3 2234555555554 3556666543
No 99
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.85 E-value=0.0016 Score=76.27 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=70.0
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHHh
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSN 869 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l~ 869 (1269)
....++.++.|+.|||||+. +... ....+.++++||++++.++.+++.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~-I~~~-------------------------------~~~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKE-ILSR-------------------------------VNFEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHH-HHHH-------------------------------CCTTTCEEEESCHHHHHHHHHHHT
T ss_pred cccccEEEEEcCCCCCHHHH-HHHH-------------------------------hccCCeEEEeCCHHHHHHHHHHhh
Confidence 34667889999999999996 4444 222466999999999999999996
Q ss_pred ccCCCceeeecceeeeccCCCCCCCEEEEccccc--cCC----CCeeEEEEecccccccCCchhHHHHHHhccCcceEEE
Q psy12699 870 DRGTPCDLITGEEKKFIQGEEKPANHVACTVEMT--SVN----IPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHV 943 (1269)
Q Consensus 870 ~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e~~--~~l----~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l 943 (1269)
+.+.. ...+.-+.|.|.. ... ...+++||||+-++ +. + .+...+....+..+.+
T Consensus 206 ~~~~~----------------~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~-~~--~-~l~~l~~~~~~~~vil 265 (446)
T 3vkw_A 206 ASGII----------------VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML-HT--G-CVNFLVEMSLCDIAYV 265 (446)
T ss_dssp TTSCC----------------CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS-CH--H-HHHHHHHHTTCSEEEE
T ss_pred hcCcc----------------ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC-CH--H-HHHHHHHhCCCCEEEE
Confidence 43210 0123457787722 111 24899999999977 31 1 2223333344567777
Q ss_pred EeecCCh
Q psy12699 944 CGEAGAV 950 (1269)
Q Consensus 944 ~~s~~~~ 950 (1269)
.|.....
T Consensus 266 vGD~~Ql 272 (446)
T 3vkw_A 266 YGDTQQI 272 (446)
T ss_dssp EECTTSC
T ss_pred ecCcccc
Confidence 7755443
No 100
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.68 E-value=0.0084 Score=56.49 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHhhhccCccchhhh-hhhHHHHHHHHHhhccCcccccccceeehhhhhhhhhhhhhh
Q psy12699 296 IMLCTQYNSALTTTII-GCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTIV 353 (1269)
Q Consensus 296 ~~~~i~~~s~~t~sv~-~~lk~v~~~lls~l~fge~~~s~~~~iG~~iil~G~~l~~~~ 353 (1269)
...++++.+..++..+ ..+.++.++++|+++|+|+. +..+++|+++++.|++.....
T Consensus 47 ~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~-s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 47 LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL-DLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhcC
Confidence 4467888888777555 89999999999999999955 999999999999999988654
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.54 E-value=0.0083 Score=74.84 Aligned_cols=50 Identities=22% Similarity=0.455 Sum_probs=32.6
Q ss_pred CceEEeccCCCCchHHH---HHHHh--cCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 825 PLKIHAGPTNSGKTYHA---LERFL--SAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~---l~~l~--~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
.-.++.||+|+|||.+. +..+. .+.++++++||...+.++.+++.+.|.+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~ 250 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 250 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCe
Confidence 34455555555555443 22222 3678999999999999999998766543
No 102
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.012 Score=75.19 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=40.7
Q ss_pred ccCCceEEeccCCCCchHHH---HHHHh--cCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA---LERFL--SAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~---l~~l~--~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
+.+.-.++.||.|+|||.+. +..+. .+.++++++||...+.++.+++.+.|.
T Consensus 373 l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~ 429 (802)
T 2xzl_A 373 LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGL 429 (802)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCc
Confidence 44566789999999998765 22222 478999999999999999999977654
No 103
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.35 E-value=0.0067 Score=76.11 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=22.7
Q ss_pred hcCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 846 LSAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 846 ~~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
..+.++++++||...+.++.+++...+.
T Consensus 231 ~~~~~ILv~a~TN~AvD~i~erL~~~~~ 258 (646)
T 4b3f_X 231 KQGLKVLCCAPSNIAVDNLVERLALCKQ 258 (646)
T ss_dssp HTTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred hCCCeEEEEcCchHHHHHHHHHHHhcCC
Confidence 3478899999999999999998876554
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.26 E-value=0.016 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=17.0
Q ss_pred CceEEEEECCCCCCcchHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
+++++++.|+.|+|||+.+++.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 45677888888888888755444
No 105
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.96 E-value=0.022 Score=72.63 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=40.4
Q ss_pred ccCCceEEeccCCCCchHHH---HHHHh--cCCcEEEEcchHHHHHHHHHHHhccCCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA---LERFL--SAESGVYCGPLKMLATEVFKKSNDRGTP 874 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~---l~~l~--~~~~~lil~Ptr~La~Qi~~~l~~~g~~ 874 (1269)
+.+.-.++.||.|+|||.+. +..+. .+.++++++||...+.++.+++.+.|.+
T Consensus 369 l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 369 LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp HTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCC
T ss_pred ccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcc
Confidence 44566788999999998765 22333 3678999999999999999998776653
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.61 E-value=0.012 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.8
Q ss_pred CceEEEEECCCCCCcchHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
++++.+++|+.|||||+.+++..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999866555
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.53 E-value=0.024 Score=59.74 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCchHHHHHHHhcCCcEEEEcchHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKM 859 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~ 859 (1269)
.++++.+++|+-|||||+.+++...... ..+.+++++.|.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~---------------------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ---------------------------FAKQHAIVFKPCID 67 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH---------------------------HTTCCEEEEECC--
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH---------------------------HCCCEEEEEEeccC
Confidence 3567889999999999998776663321 45778888888653
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.42 E-value=0.029 Score=67.23 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=59.7
Q ss_pred ceEEeccCCCCchHHH---HHHHhc-CC-cEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEcc
Q psy12699 826 LKIHAGPTNSGKTYHA---LERFLS-AE-SGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTV 900 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~---l~~l~~-~~-~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~ 900 (1269)
.+++.|+.|||||.+. +..+.. +. ++++++||...|.++.+++...+..+.-..+-..... ... ..+. .
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~----~~~-~~~~-~ 120 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTY----EEN-VLFE-Q 120 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEEC----SSC-EEEE-E
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccc----ccc-chhc-c
Confidence 7788888888887665 222222 33 7899999999999888877321111100111000000 001 1111 1
Q ss_pred ccccCCCCeeEEEEecccccccCCchhHHHHHHhccC-cceEEEEeecC
Q psy12699 901 EMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLM-AKEIHVCGEAG 948 (1269)
Q Consensus 901 e~~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~-~~~~~l~~s~~ 948 (1269)
.....+.+++++||||+|++.. ..+..++..+. ...+.++|...
T Consensus 121 ~~~~~~~~~~~iiiDE~~~~~~----~~~~~l~~~~~~~~~~~~vGD~~ 165 (459)
T 3upu_A 121 KEVPDLAKCRVLICDEVSMYDR----KLFKILLSTIPPWCTIIGIGDNK 165 (459)
T ss_dssp CSCCCCSSCSEEEESCGGGCCH----HHHHHHHHHSCTTCEEEEEECTT
T ss_pred cccccccCCCEEEEECchhCCH----HHHHHHHHhccCCCEEEEECCHH
Confidence 1223456899999999998842 12333333333 34566666443
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.26 E-value=0.023 Score=69.81 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=60.8
Q ss_pred ccCCceEEeccCCCCchHHH--HHHH--hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA--LERF--LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~--l~~l--~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
+.++.+++.+|.|+|||.+. +... ..+.++++++||...+.++.+........+.-..+... .
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~----------~--- 268 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP----------Q--- 268 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET----------T---
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc----------c---
Confidence 45667777777777777654 2221 23788999999999999888766321110000001000 0
Q ss_pred Eccc-cccCCCCeeEEEEecccccccCCchhHHHHHHhccCc-ceEEEEeecC
Q psy12699 898 CTVE-MTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMA-KEIHVCGEAG 948 (1269)
Q Consensus 898 ~T~e-~~~~l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~-~~~~l~~s~~ 948 (1269)
... ......+++++||||++++.. ..+...+..++. ..+.+++...
T Consensus 269 -~~~~~~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 269 -GFRHNHLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp -EESCSSSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEEEEECTT
T ss_pred -hhhhhhcccccCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEEEEeccc
Confidence 000 011234789999999999842 133444444443 3566666443
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.39 E-value=0.038 Score=59.00 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=18.2
Q ss_pred CceEEEEECCCCCCcchHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
++.++++.|++|+|||+.+++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHH
Confidence 46788899999999999865554
No 111
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.10 E-value=0.047 Score=58.04 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.8
Q ss_pred CceEEEEECCCCCCcchHHHHHHHh
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLS 816 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~ 816 (1269)
.+++.+++|+-|||||+.+++....
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999987777633
No 112
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.73 E-value=0.036 Score=65.73 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=32.5
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++++++++||||||||.+++.+++... +..|..+++.+||-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~--~~~g~~~lvl~Pt~ 41 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREA--VKKRLRTVILAPTR 41 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHH--HHTTCCEEEEESSH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HhCCCCEEEECcHH
Confidence 367899999999999999877776432 34677899999983
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.64 E-value=0.11 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.7
Q ss_pred CceEEEEECCCCCCcchHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.+.+.+++|+-|||||+..++.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999766665
No 114
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.51 E-value=0.022 Score=59.02 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=19.2
Q ss_pred ccccCceEEEEECCCCCCcchHHHHHH
Q psy12699 788 ARSISRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 788 ~~~~~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
......++.++.|+.|||||+..++++
T Consensus 15 ~~~~~g~l~fiyG~MgsGKTt~Ll~~i 41 (195)
T 1w4r_A 15 GSKTRGQIQVILGPMFSGKSTELMRRV 41 (195)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHH
Confidence 334457789999999999998756555
No 115
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.21 E-value=0.059 Score=56.49 Aligned_cols=43 Identities=21% Similarity=0.085 Sum_probs=31.4
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+.++++++++|||||||..++.+++.....-..+..+++..||
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 38 LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 3557889999999999998776665543222234568899998
No 116
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.98 E-value=0.06 Score=57.34 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=31.9
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+.++++++++|||+|||..++.+++.....-..+..+++.+||
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3456789999999999998766665543322345679999998
No 117
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=92.91 E-value=0.08 Score=65.66 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=36.3
Q ss_pred ccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 786 PNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 786 ~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
......+++++++++|||||||.+++.+++... ...+..+++.+||-
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l--~~~~~~vLvl~Ptr 225 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREA--LKRRLRTLILAPTR 225 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHH--HHTTCCEEEEESSH
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHH--HhCCCeEEEEcChH
Confidence 345556789999999999999999877776553 22466899999984
No 118
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.71 E-value=0.059 Score=64.48 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=33.4
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+++++++++|||||||.+++.+++... +..|..+++.+||-
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~--~~~~~~~lvl~Ptr 60 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDA--IQQRLRTAVLAPTR 60 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHH--HHTTCCEEEEECSH
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEECchH
Confidence 3578999999999999999877776543 23577899999984
No 119
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.55 E-value=0.07 Score=63.43 Aligned_cols=41 Identities=17% Similarity=0.044 Sum_probs=32.7
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.++++++++||||||||.+++.+++... ...+..+++.+||
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~--~~~~~~~lil~Pt 46 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAEC--ARRRLRTLVLAPT 46 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHH--HHTTCCEEEEESS
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHH--HhcCCeEEEEcch
Confidence 4678999999999999999877776542 1245688999998
No 120
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.54 E-value=0.066 Score=58.29 Aligned_cols=43 Identities=26% Similarity=0.116 Sum_probs=31.2
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++++|||||||.+++.+++.....-..+..+++.+||
T Consensus 78 ~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 78 LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 4568899999999999999776665443211224458899998
No 121
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.42 E-value=0.082 Score=59.37 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=30.7
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++++++++|||||||..++.+++.....-..+..+++.+||-
T Consensus 131 ~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 378899999999999998777765532222233688899973
No 122
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.40 E-value=0.092 Score=62.65 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=31.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+++++++||||||||.+++.+++... +..|..+++.+||-
T Consensus 18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~--~~~~~~~lvl~Ptr 58 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTKRILPSIVREA--LLRRLRTLILAPTR 58 (451)
T ss_dssp TTCEEEECCCTTSSCCTTHHHHHHHHH--HHTTCCEEEEESSH
T ss_pred cCCeEEEECCCCCCHhhHHHHHHHHHH--HhcCCcEEEECCCH
Confidence 345569999999999998777776543 34577899999984
No 123
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.23 E-value=0.086 Score=56.51 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=31.1
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+++++++++|||||||.+++.+++.....--.+..+++..||
T Consensus 59 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 59 RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3567889999999999998766665443111235678999998
No 124
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.21 E-value=0.24 Score=49.21 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=14.0
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
+.+.+++|+||.+.+.+
T Consensus 81 ~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp GGGCSEEEEESTTCCCS
T ss_pred HhCCCEEEEeCccccCh
Confidence 45789999999998744
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.20 E-value=0.087 Score=54.04 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=38.1
Q ss_pred cCCceEEeccCCCCchHHH--HHHHh--c-CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 823 CGPLKIHAGPTNSGKTYHA--LERFL--S-AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~--l~~l~--~-~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
.|+.+++.+|+|+|||..+ +.... . +..++ ..+..++..++...+......
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------- 92 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY-FFDTKDLIFRLKHLMDEGKDT----------------------- 92 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC-EEEHHHHHHHHHHHHHHTCCS-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE-EEEHHHHHHHHHHHhcCchHH-----------------------
Confidence 4666777777777776655 22222 2 33333 345566665555444321100
Q ss_pred EccccccCCCCeeEEEEeccccc
Q psy12699 898 CTVEMTSVNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 898 ~T~e~~~~l~~~~~lViDEah~~ 920 (1269)
+.+..+.+.+++|+||.+..
T Consensus 93 ---~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 93 ---KFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp ---HHHHHHHTCSEEEEETCSSS
T ss_pred ---HHHHHhcCCCEEEEeCCCCC
Confidence 12223447789999999954
No 126
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.08 E-value=0.066 Score=63.02 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=43.3
Q ss_pred HhHHHHHHHhhCCCCCcccccccccCCCCCCccCccccccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEec
Q psy12699 752 FPYYLRHAKQMFPHLDCMDDLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAG 831 (1269)
Q Consensus 752 ~~~~l~~~k~~~p~~~~~~~l~~i~~l~~~~~~~~~~~~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~a 831 (1269)
+..+.+..++.+++--++-|.+.+.. .++++++++++|||||||..++.+.+... ..+..+++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~Q~~~i~~------------i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~ 71 (414)
T 3oiy_A 7 YEDFRSFFKKKFGKDLTGYQRLWAKR------------IVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVF 71 (414)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHH------------HTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHH------------HhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEE
Confidence 44455555666665333333333322 23557889999999999998776664432 4577889999
Q ss_pred cC
Q psy12699 832 PT 833 (1269)
Q Consensus 832 pT 833 (1269)
||
T Consensus 72 Pt 73 (414)
T 3oiy_A 72 PT 73 (414)
T ss_dssp SS
T ss_pred CC
Confidence 98
No 127
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.07 E-value=0.095 Score=55.60 Aligned_cols=43 Identities=16% Similarity=-0.047 Sum_probs=31.5
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++++|||+|||..++.+++.....-..+..+++..||
T Consensus 49 ~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 49 ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 3456789999999999999877775553222224478999998
No 128
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.99 E-value=0.056 Score=58.32 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++++|||||||..++.+++.....-..+..+++..||
T Consensus 65 ~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 65 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 3567789999999999998777765543222245689999998
No 129
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.87 E-value=0.1 Score=55.82 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=30.5
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcc------cccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESG------VYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~------l~~g~~vlv~apT 833 (1269)
++++++++++|||||||..++.+.+..... -..+..+++.+||
T Consensus 55 ~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 55 LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 456788999999999999876665443211 0145678888898
No 130
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.81 E-value=0.071 Score=56.63 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=31.2
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+++++++++|||||||..++.+++.....-..+..+++.+||
T Consensus 40 ~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 40 RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 457789999999999998776665543222235678999998
No 131
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.56 E-value=0.12 Score=55.99 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=31.7
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcc-cccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESG-VYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~-l~~g~~vlv~apT 833 (1269)
++++++++++|||||||..++.+++..... -..+..+++.+||
T Consensus 64 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 64 LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 456789999999999999876666554321 1245578999998
No 132
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.56 E-value=0.1 Score=56.00 Aligned_cols=43 Identities=28% Similarity=0.201 Sum_probs=31.1
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhc----ccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAES----GVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~----~l~~g~~vlv~apT 833 (1269)
++++++++++|||||||.+++.+++.... .-..+..+++.+||
T Consensus 60 ~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 60 LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 45678999999999999987665543321 11246778999998
No 133
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.20 E-value=0.14 Score=53.64 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=31.0
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcc---cccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESG---VYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~---l~~g~~vlv~apT 833 (1269)
++++++++++|||+|||..++.+++..... -..+..+++..||
T Consensus 36 ~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 36 LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 345778999999999999877666544211 1235679999998
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.20 E-value=0.24 Score=52.86 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.7
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.++.+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 5788999999999999775
No 135
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.94 E-value=0.13 Score=60.26 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=33.2
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++++++++++|||||||.+++.+++.....-..+..+++..||-
T Consensus 75 ~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 75 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 35677899999999999998777765543223567789999973
No 136
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.82 E-value=0.1 Score=57.23 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=30.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcc----cccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESG----VYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~----l~~g~~vlv~apT 833 (1269)
.++++++++|||||||..++.+++..... -..+..+++.+||
T Consensus 90 ~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 90 EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 45778999999999999877666543211 1246778999997
No 137
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=90.76 E-value=0.15 Score=61.15 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=30.5
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+++++++||||||||.+++.+++.....-..+..+++..||
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 47889999999999999877776553222223378999997
No 138
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=90.69 E-value=0.13 Score=64.43 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=32.9
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++||||||||.+++.+++... ...+..+++.+||
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l--~~~~~~~lilaPT 279 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDA--IQKRLRTAVLAPT 279 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHH--HHTTCCEEEEESS
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH--HhCCCcEEEEccH
Confidence 688999999999999999888876553 2356789999998
No 139
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.63 E-value=0.16 Score=59.41 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=30.7
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++|||||||.+++.+++.....-..+..+++..||
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 47889999999999999877776553222234478889997
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.36 E-value=0.46 Score=48.23 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=11.8
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
+-.+++|||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 115 GQVVMFIDEIHTVV 128 (187)
T ss_dssp TSEEEEETTGGGGS
T ss_pred CceEEEEeCHHHhc
Confidence 34699999999995
No 141
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.14 E-value=0.18 Score=58.32 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=31.0
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+++++++|||+|||.+++.+++.....--.+..+++..||-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 85 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR 85 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH
Confidence 77899999999999998777755432222466799999973
No 142
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.12 E-value=0.17 Score=59.27 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=32.7
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++++|||||||.+++.+++.....-..+..+++.+||
T Consensus 72 ~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 72 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 3567899999999999999877775543222356789999998
No 143
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.73 E-value=0.19 Score=54.20 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=31.0
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhccc-----ccCCceEEeccCC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGV-----YCGPLKIHAGPTN 834 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l-----~~g~~vlv~apTG 834 (1269)
++++++++++|||||||..++.+++.....- ..+..+++.+||-
T Consensus 64 ~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~ 112 (242)
T 3fe2_A 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR 112 (242)
T ss_dssp HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSH
T ss_pred hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcH
Confidence 3567899999999999999766665432110 1355688899983
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.71 E-value=1 Score=49.28 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=14.3
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
.+++++.+|+|+|||..+
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 356888888888888776
No 145
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=89.64 E-value=0.21 Score=60.58 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=31.0
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++.+++++|||||||.+++.+++.....-..+..+++.+||
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~ 198 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 198 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSC
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECc
Confidence 37889999999999999877776553222234578999997
No 146
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.52 E-value=0.22 Score=57.72 Aligned_cols=42 Identities=14% Similarity=-0.080 Sum_probs=31.7
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.++++++++|||+|||.+++.+++........+..+++..||
T Consensus 44 ~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 44 LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 457789999999999999877775553222335678999997
No 147
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.40 E-value=0.3 Score=60.42 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.8
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++++++++||||||||+++...++. .|..+++.+||
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PT 266 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPS 266 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESC
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcch
Confidence 6789999999999999987665532 36689999998
No 148
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=89.06 E-value=0.24 Score=53.73 Aligned_cols=43 Identities=26% Similarity=0.206 Sum_probs=30.4
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcc---------cccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESG---------VYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~---------l~~g~~vlv~apT 833 (1269)
+.++++++++|||||||..++.+++..... -..+..+++.+||
T Consensus 58 ~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt 109 (253)
T 1wrb_A 58 LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPT 109 (253)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSS
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECC
Confidence 456789999999999999876666543210 1123578888898
No 149
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.94 E-value=0.21 Score=59.09 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=29.5
Q ss_pred EeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1019 IYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1019 i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
+||++++.+|...+..|.+ +....|++|+..++|.++.
T Consensus 330 lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 330 IHGDRLQSQREQALRDFKN--GSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp ESTTSCHHHHHHHHHHHHT--SSCSEEEECGGGTSSCCCT
T ss_pred EeCCCCHHHHHHHHHHHHc--CCCcEEEEchhhhCCCCcc
Confidence 5778888888888877754 3566888999999887776
No 150
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.86 E-value=0.14 Score=64.97 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHHh---cCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 999 KNDVYTVSRGIES---RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 999 ~~~~~~l~~~L~~---~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
.+.++.+++.|.+ .+.++..+||.+++++|...+..|.+ +....+++|+.++.|.++.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~--G~~~ILVaT~vie~GIDiP 656 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--GRYDILVSTTVIEVGIDVP 656 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--TSSSBCCCSSCCCSCSCCT
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEECCCCCccccCC
Confidence 3467888888877 46788899999999999988888875 4567899999999887775
No 151
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.83 E-value=0.25 Score=57.46 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=31.2
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+++++++++|||+|||.+++.+++.....-..+..+++..||
T Consensus 57 ~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 57 TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 456789999999999998877765543222245678899997
No 152
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.91 E-value=0.3 Score=52.49 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=27.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCC----ceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGP----LKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~----~vlv~apT 833 (1269)
.+++++++||||||||+++...++... ...++ .+++..||
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~~~~~~~~l~~~p~ 118 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDF--IQNDRAAECNIVVTQPR 118 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHH--HHTTCGGGCEEEEEESS
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcch--hhcCCCCceEEEEeccc
Confidence 578999999999999997544443321 12222 67777786
No 153
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.91 E-value=0.26 Score=62.51 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1013 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1013 ~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
...+..+|+.+++++|......|.+ +....+++|+..+.|-++..
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~ 356 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPA 356 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHT--TCSCEEEECGGGGGSSCCCB
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHc--CCCeEEEEChHHhcccCCCc
Confidence 3457889999999999887776764 46678899999999988763
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.52 E-value=1.2 Score=45.23 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=11.7
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
+..+++|||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34589999999995
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.22 E-value=0.33 Score=59.48 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=38.4
Q ss_pred HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1010 ~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
...+..+..+|+.+++++|......|.+ +....+++|+..+.|.++..
T Consensus 363 ~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~GiDip~ 410 (563)
T 3i5x_A 363 FKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDVGARGMDFPN 410 (563)
T ss_dssp HTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGGGTSSCCCTT
T ss_pred ccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEcchhhcCCCccc
Confidence 3456778889999999999988877765 45678899999998877763
No 156
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.16 E-value=0.28 Score=55.30 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=29.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+++++++++|||+|||.+++.+++. .+..+++..||
T Consensus 30 ~~~~~lv~~~TGsGKT~~~~~~~~~------~~~~~liv~P~ 65 (337)
T 2z0m_A 30 QGKNVVVRAKTGSGKTAAYAIPILE------LGMKSLVVTPT 65 (337)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHH------HTCCEEEECSS
T ss_pred cCCCEEEEcCCCCcHHHHHHHHHHh------hcCCEEEEeCC
Confidence 4567899999999999987766643 36778888897
No 157
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=86.63 E-value=0.25 Score=57.24 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=31.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.++++++++|||+|||.+++.+++.....-..+..+++..||
T Consensus 57 ~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 57 EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 456789999999999998776665543333346688999997
No 158
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.27 E-value=0.51 Score=53.34 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=25.1
Q ss_pred CCceEEeccCCCCchHHH--HHHHh-c-CCcEEEEcchHHHHHHHHHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA--LERFL-S-AESGVYCGPLKMLATEVFKKS 868 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~--l~~l~-~-~~~~lil~Ptr~La~Qi~~~l 868 (1269)
+..+++.+|+|+|||..+ +.... . +.+.+++. ..++..+....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~ 84 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDFAQAMVEHL 84 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHHHHHHHHHH
Confidence 467888999999998776 22212 1 45555554 334444444333
No 159
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=85.86 E-value=0.22 Score=62.91 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=34.5
Q ss_pred CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc
Q psy12699 1014 TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1014 ~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
..+..+|+.+++++|......|.+ +....+++|+..+.|-++.
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gidip 339 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRR--GNIKVVVATPTLAAGVNLP 339 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHT--TSCCEEEECSTTTSSSCCC
T ss_pred cCeEEecCCCCHHHHHHHHHHHHC--CCCeEEEECcHHhccCCCC
Confidence 456778999999999888776764 4667888999999888776
No 160
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.74 E-value=0.41 Score=55.99 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=21.6
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhh
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSA 817 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~ 817 (1269)
+.++++++++|||||||..++.+++..
T Consensus 50 ~~~~~~lv~a~TGsGKT~~~~~~~l~~ 76 (417)
T 2i4i_A 50 KEKRDLMACAQTGSGKTAAFLLPILSQ 76 (417)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999876666543
No 161
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=85.63 E-value=0.54 Score=53.64 Aligned_cols=39 Identities=26% Similarity=0.132 Sum_probs=29.1
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
+.+++++|||||||.+++.+++..... ..+..+++..||
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~~~~lil~P~ 83 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNE-NNGIEAIILTPT 83 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCS-SSSCCEEEECSC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcc-cCCCcEEEEcCC
Confidence 688999999999999977666443211 136678999997
No 162
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=85.35 E-value=0.33 Score=64.23 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=32.7
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
..+++++++||||||||.+|..+++.. +..|+.+++.+||
T Consensus 197 ~~g~dvLV~ApTGSGKTlva~l~i~~~---l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 197 DRGESVLVSAHTSAGKTVVAEYAIAQS---LKNKQRVIYTSPI 236 (1108)
T ss_dssp TTTCCEEEECCSSSHHHHHHHHHHHHH---HHTTCEEEEEESS
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHH---HhcCCeEEEEcCc
Confidence 356788999999999999987776544 3568889999998
No 163
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.11 E-value=0.68 Score=56.98 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++|||+|||..+..+.+. .+..+++.+||
T Consensus 56 il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~ 93 (591)
T 2v1x_A 56 TMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPL 93 (591)
T ss_dssp HHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSC
T ss_pred HHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCH
Confidence 356788999999999999986544422 34568888887
No 164
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.98 E-value=0.53 Score=62.28 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=32.1
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++|||||||..+++.++... ..|..+++.+||
T Consensus 90 il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~Pt 130 (1104)
T 4ddu_A 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPT 130 (1104)
T ss_dssp HTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESS
T ss_pred HHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEech
Confidence 34578899999999999998777765442 457788888887
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.80 E-value=1 Score=51.02 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.8
Q ss_pred CceEEeccCCCCchHHH
Q psy12699 825 PLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~ 841 (1269)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999776
No 166
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=84.51 E-value=0.55 Score=57.82 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=38.4
Q ss_pred HhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1010 ~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
...+..+..+||.+++++|......|.+ +....|++|+..+.|.++..
T Consensus 312 ~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~~~~~GiDip~ 359 (579)
T 3sqw_A 312 FKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDVGARGMDFPN 359 (579)
T ss_dssp HTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGGGTSSCCCTT
T ss_pred hcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcchhhcCCCccc
Confidence 3456778889999999999888877764 45678899999999988764
No 167
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=84.37 E-value=0.56 Score=57.01 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=80.6
Q ss_pred cccCCceEEeccCCCCchHHHHHHH----hc-----CCcEEEEcchHHHHHHHHHHHhcc----CCCceeeecceeeecc
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERF----LS-----AESGVYCGPLKMLATEVFKKSNDR----GTPCDLITGEEKKFIQ 887 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l----~~-----~~~~lil~Ptr~La~Qi~~~l~~~----g~~v~~~~G~~~~~~~ 887 (1269)
+++|+|+++++|||+|||++++..+ .. +++++|++|||+|+.|++++++++ +.++..++|+.....+
T Consensus 16 ~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 16 AKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVS 95 (555)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSC
T ss_pred HhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhh
Confidence 4678999999999999999883332 22 678999999999999999999765 7788889998644322
Q ss_pred CC--CCCCCEEEEcccccc---------CCCCeeEEEEecccccccCC
Q psy12699 888 GE--EKPANHVACTVEMTS---------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 888 ~~--~~~~~Ivv~T~e~~~---------~l~~~~~lViDEah~~~d~~ 924 (1269)
.. ..+++|+|+||+.+. .+.+++++|+||||++.+.+
T Consensus 96 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 96 VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred HHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 11 115899999988443 36689999999999997643
No 168
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=84.32 E-value=0.4 Score=60.81 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1013 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1013 ~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
...+..+|+.+++++|......|.+ +....+++|+..+.|-++..
T Consensus 294 ~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gvdip~ 338 (720)
T 2zj8_A 294 RGGVAFHHAGLGRDERVLVEENFRK--GIIKAVVATPTLSAGINTPA 338 (720)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHT--TSSCEEEECSTTGGGCCCCB
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHC--CCCeEEEECcHhhccCCCCc
Confidence 3457888999999999887777764 45678889999998888763
No 169
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=84.28 E-value=0.57 Score=57.05 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=31.1
Q ss_pred eeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHh
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIA 1143 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~ 1143 (1269)
....+||+|++++|++++++|+ + |+++|||||+++++|||+ ++++||+||. |.++.+|+||+
T Consensus 428 ~~~~~~~~~~~~~R~~~~~~F~--~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~--------------p~s~~~~~Qr~ 491 (556)
T 4a2p_A 428 GRRDQTTGMTLPSQKGVLDAFK--TSKDNRLLIATSVADEGIDIVQCNLVVLYEY--------------SGNVTKMIQVR 491 (556)
T ss_dssp ----------------------------CCEEEEEC-----------CEEEEETC--------------CSCHHHHHHC-
T ss_pred CCcccccccCHHHHHHHHHHhc--ccCceEEEEEcCchhcCCCchhCCEEEEeCC--------------CCCHHHHHHhc
Confidence 3566799999999999999999 7 999999999999999999 9999999998 88999999999
Q ss_pred cccCCCCCccccccCCCCc
Q psy12699 1144 GRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1144 GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|| ||. ++|.++....++
T Consensus 492 GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 492 GR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp ---------CCEEEEESCH
T ss_pred CC-CCC-CCceEEEEEeCc
Confidence 99 998 777775554443
No 170
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.25 E-value=0.59 Score=50.25 Aligned_cols=37 Identities=24% Similarity=0.111 Sum_probs=28.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+++.+++++|||+|||.+++..+.. .++.+++.+||-
T Consensus 107 ~~~~~ll~~~tG~GKT~~a~~~~~~------~~~~~liv~P~~ 143 (237)
T 2fz4_A 107 VDKRGCIVLPTGSGKTHVAMAAINE------LSTPTLIVVPTL 143 (237)
T ss_dssp TTSEEEEEESSSTTHHHHHHHHHHH------SCSCEEEEESSH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHHHH------cCCCEEEEeCCH
Confidence 4456899999999999997655522 167788888974
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.98 E-value=2.5 Score=48.41 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=12.9
Q ss_pred CeeEEEEecccccccC
Q psy12699 908 PYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 908 ~~~~lViDEah~~~d~ 923 (1269)
.-.++||||+|.+.+.
T Consensus 128 ~~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKK 143 (386)
T ss_dssp SCEEEEEETHHHHHHS
T ss_pred CeEEEEEcChhhhhcc
Confidence 3669999999999643
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.95 E-value=2.1 Score=49.15 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.6
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+..++||||+|.+.+
T Consensus 130 ~~~vlilDEi~~l~~ 144 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPK 144 (387)
T ss_dssp SEEEEEEETTTHHHH
T ss_pred CeEEEEEccHhhhcc
Confidence 466999999999964
No 173
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=83.84 E-value=0.65 Score=55.45 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=49.6
Q ss_pred CCCCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 989 QPGDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 989 ~~g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
..+.++||+ +++.++.+++.|. +..++|.+++.+|...+..|.+ +....+++|+....|.++..
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~--g~~~vLv~T~~~~~Gldlp~ 412 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRAIVSSQVLDEGIDVPD 412 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSBCBCSSCCCSSSCSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC--CCCCEEEEcCchhcCccccc
Confidence 345777777 8888999988873 4567899999999888877765 55677888988888877763
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.45 E-value=1.1 Score=53.11 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCceEEeccCCCCchHHH--HHHHh----cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEE
Q psy12699 824 GPLKIHAGPTNSGKTYHA--LERFL----SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVA 897 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~--l~~l~----~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv 897 (1269)
+..+++.||+|+|||..+ +.... .+.+.+++.. ..+..+..+.+.....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~~~~~~~------------------------ 184 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEGKL------------------------ 184 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHHHHTTCH------------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHcccH------------------------
Confidence 467889999999998776 22211 1445555443 3344444444432100
Q ss_pred EccccccCCC-CeeEEEEeccccccc
Q psy12699 898 CTVEMTSVNI-PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 898 ~T~e~~~~l~-~~~~lViDEah~~~d 922 (1269)
.+...... +.++++|||+|.+.+
T Consensus 185 --~~~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 185 --NEFREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp --HHHHHHHTTTCSEEEEECGGGGSS
T ss_pred --HHHHHHhcCCCCEEEEeCcccccC
Confidence 00111123 677999999999965
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.07 E-value=2.2 Score=49.02 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=10.8
Q ss_pred EEEEeccccccc
Q psy12699 911 VAVIDEIQMMRD 922 (1269)
Q Consensus 911 ~lViDEah~~~d 922 (1269)
++||||+|.+.+
T Consensus 136 vlilDEi~~l~~ 147 (384)
T 2qby_B 136 IIYLDEVDTLVK 147 (384)
T ss_dssp EEEEETTHHHHH
T ss_pred EEEEECHHHhcc
Confidence 999999999954
No 176
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.61 E-value=1.1 Score=50.32 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=14.3
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
..++++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467888888888888775
No 177
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=82.25 E-value=0.33 Score=50.85 Aligned_cols=42 Identities=21% Similarity=-0.036 Sum_probs=29.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcc---cccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESG---VYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~---l~~g~~vlv~apT 833 (1269)
+++.+++++|||+|||..++..++..... -..+..+++..||
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 45778999999999999876655432111 1125678888887
No 178
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=82.23 E-value=0.91 Score=56.63 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=30.0
Q ss_pred CceEEeccCCCCchHHHHH---HHhc-----CCcEEEEcchHHHHHHHHHHHhc
Q psy12699 825 PLKIHAGPTNSGKTYHALE---RFLS-----AESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~---~l~~-----~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
..++|.|+.|||||.+... .+.. ..+++++++|+..+.++.+++.+
T Consensus 23 ~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 23 SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 3455555555555544421 1121 25899999999999999999865
No 179
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=82.09 E-value=0.65 Score=56.05 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=52.0
Q ss_pred CEEEEecHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhh-hhhccCcccc
Q psy12699 992 DCIVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVAT-DAIGMGLNFR 1058 (1269)
Q Consensus 992 ~~iv~~s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t-~~~~~~~~~~ 1058 (1269)
..++|++.+.++.+++.|.+.+.++..+||.+++++|...+..|.+ +....+++| +..+.|.++.
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCC
T ss_pred eEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccc
Confidence 4555668888999999999988899999999999999888877763 344578888 8888776654
No 180
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=81.86 E-value=0.72 Score=58.08 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=56.6
Q ss_pred CCCEEEEe-cHHhHHHHHHHHHhcC----CceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCC
Q psy12699 990 PGDCIVCF-SKNDVYTVSRGIESRG----TEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRG 1064 (1269)
Q Consensus 990 ~g~~iv~~-s~~~~~~l~~~L~~~~----~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~g 1064 (1269)
.+.++||+ +++.++.+++.|++.+ .++..++|.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~------------------------------------------ 435 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR------------------------------------------ 435 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------------------------
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEcc------------------------------------------
Confidence 45788888 8999999999998876 333322221
Q ss_pred ceeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHH
Q psy12699 1065 TEVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQI 1142 (1269)
Q Consensus 1065 i~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR 1142 (1269)
....+||+|++++|++++++|+ + |+++|||||+++++|||+ ++++||+||+ |.+.++|+||
T Consensus 436 -~~~~~h~~~~~~eR~~v~~~F~--~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~--------------p~s~~~~~Qr 498 (696)
T 2ykg_A 436 -GKTNQNTGMTLPAQKCILDAFK--ASGDHNILIATSVADEGIDIAQCNLVILYEY--------------VGNVIKMIQT 498 (696)
T ss_dssp ----------------------------CCSCSEEEESSCCC---CCCSEEEEESC--------------C--CCCC---
T ss_pred -CCCccccCCCHHHHHHHHHHHH--hcCCccEEEEechhhcCCcCccCCEEEEeCC--------------CCCHHHHHHh
Confidence 1334489999999999999999 8 999999999999999999 9999999998 7889999999
Q ss_pred hcccCCCCCccccccCCCC
Q psy12699 1143 AGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1143 ~GRaGR~G~~g~~~~~~~p 1161 (1269)
+|| ||. ++|.++....+
T Consensus 499 ~GR-GR~-~~g~~~~l~~~ 515 (696)
T 2ykg_A 499 RGR-GRA-RGSKCFLLTSN 515 (696)
T ss_dssp --------CCCEEEEEESC
T ss_pred hcc-CcC-CCceEEEEecC
Confidence 999 998 67777554444
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.92 E-value=3.5 Score=47.27 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=12.0
Q ss_pred CCeeEEEEeccccc
Q psy12699 907 IPYEVAVIDEIQMM 920 (1269)
Q Consensus 907 ~~~~~lViDEah~~ 920 (1269)
.+..++||||+|.+
T Consensus 124 ~~~~vlilDE~~~l 137 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL 137 (389)
T ss_dssp TCCEEEEEETGGGS
T ss_pred CCeEEEEEECcccc
Confidence 45679999999999
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.82 E-value=5 Score=45.03 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=11.9
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+..+++|||+|.+..
T Consensus 110 ~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 110 KPSIIFIDQVDALTG 124 (322)
T ss_dssp SSEEEEEECGGGGSC
T ss_pred CCeEEEechhhhhhc
Confidence 346899999999853
No 183
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=80.50 E-value=0.88 Score=56.24 Aligned_cols=45 Identities=27% Similarity=0.275 Sum_probs=30.3
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhccc--ccCCceEEeccCCC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGV--YCGPLKIHAGPTNS 835 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l--~~g~~vlv~apTGs 835 (1269)
.+.++++++.|++|+|||+. +..++.....+ -.+..+++++|||.
T Consensus 161 ~l~~~~~vi~G~pGTGKTt~-l~~ll~~l~~~~~~~~~~vll~APTg~ 207 (608)
T 1w36_D 161 ALTRRISVISGGPGTGKTTT-VAKLLAALIQMADGERCRIRLAAPTGK 207 (608)
T ss_dssp HHTBSEEEEECCTTSTHHHH-HHHHHHHHHHTCSSCCCCEEEEBSSHH
T ss_pred HhcCCCEEEEeCCCCCHHHH-HHHHHHHHHHhhhcCCCeEEEEeCChh
Confidence 34678999999999999975 22222222111 23568999999973
No 184
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.22 E-value=0.94 Score=57.58 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred cCCceEEEeCCCChhhHHHHhcccCCC---CCCccchhhhhhhccCcccc
Q psy12699 1012 RGTEVAVIYGSLPPTTKLAQASKFNDP---DNPCKVMVATDAIGMGLNFR 1058 (1269)
Q Consensus 1012 ~~~~~~~i~g~l~~~~r~~~~~~f~~~---~~~~~~l~~t~~~~~~~~~~ 1058 (1269)
.+..+..+|+.+++++|......|... .+....+++|+..+.|.++.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp 386 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTID 386 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCT
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcC
Confidence 355677888999888887777666521 45667888888888887776
No 185
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=80.02 E-value=0.91 Score=59.45 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=34.5
Q ss_pred ceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1015 EVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1015 ~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.+...||.+++..|......|.+ +....+++|+..+.|.++..
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~--G~ikVLVAT~~la~GIDiP~ 450 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPA 450 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHT--TCCSEEEEEGGGGGSTTCCB
T ss_pred CeeEECCCCCHHHHHHHHHHHhc--CCCcEEEEehHhhccCCCCC
Confidence 46788999999999888777765 45678889999998888763
No 186
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=79.50 E-value=1 Score=57.61 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=36.1
Q ss_pred eeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHh
Q psy12699 1066 EVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIA 1143 (1269)
Q Consensus 1066 ~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~ 1143 (1269)
....+||+|++++|.+++++|+ + |+++|||||+++++|||+ ++++||+||. |.++.+|+||+
T Consensus 669 ~~~~~hg~~~~~eR~~~l~~F~--~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~--------------p~s~~~~iQr~ 732 (797)
T 4a2q_A 669 GRRDQTTGMTLPSQKGVLDAFK--TSKDNRLLIATSVADEGIDIVQCNLVVLYEY--------------SGNVTKMIQVR 732 (797)
T ss_dssp ---------------------------CCSEEEEECC-------CCCSEEEEESC--------------CSCHHHHHTC-
T ss_pred CCcccCCCCCHHHHHHHHHHhh--ccCCceEEEEcCchhcCCCchhCCEEEEeCC--------------CCCHHHHHHhc
Confidence 3566799999999999999999 7 999999999999999999 9999999998 88999999999
Q ss_pred cccCCCCCccccccCCCCc
Q psy12699 1144 GRAGRFNTHFEKLAGSHPA 1162 (1269)
Q Consensus 1144 GRaGR~G~~g~~~~~~~p~ 1162 (1269)
|| ||. ++|.++....+.
T Consensus 733 GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 733 GR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp --------CCCEEEEECCH
T ss_pred CC-CCC-CCceEEEEEeCC
Confidence 99 998 778875555443
No 187
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.37 E-value=0.7 Score=56.05 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=26.9
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.++++++++|||+|||..+..+.+. .+...++.+|+
T Consensus 37 il~g~d~lv~apTGsGKTl~~~lp~l~------~~g~~lvi~P~ 74 (523)
T 1oyw_A 37 VLSGRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPL 74 (523)
T ss_dssp HHTTCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSC
T ss_pred HHcCCCEEEECCCCcHHHHHHHHHHHH------hCCCEEEECCh
Confidence 346678999999999999977444422 23346777776
No 188
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=79.23 E-value=0.76 Score=50.73 Aligned_cols=38 Identities=16% Similarity=-0.037 Sum_probs=26.7
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCC-ceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGP-LKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~-~vlv~apT 833 (1269)
++..++++|||+|||.+++...... +..++ .+++.+||
T Consensus 128 ~~~~ll~~~tGsGKT~~~~~~~~~~---~~~~~~~~lil~Pt 166 (282)
T 1rif_A 128 NRRRILNLPTSAGRSLIQALLARYY---LENYEGKILIIVPT 166 (282)
T ss_dssp HSEEEECCCTTSCHHHHHHHHHHHH---HHHCSSEEEEECSS
T ss_pred cCCeEEEcCCCCCcHHHHHHHHHHH---HHcCCCeEEEEECC
Confidence 3456789999999999975544322 22343 78999998
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=78.32 E-value=0.46 Score=49.99 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=13.3
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+.+++||||.+...|
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 599999999998865
No 190
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=77.89 E-value=1.2 Score=58.17 Aligned_cols=45 Identities=33% Similarity=0.398 Sum_probs=34.6
Q ss_pred CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 1013 GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 1013 ~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
...+...|+.+++..|......|.+ +....+++|+..+.|.++..
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kVLvAT~~~a~GIDiP~ 443 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPT 443 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSCCCCC
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHC--CCCcEEEEchHhhCCCCCCC
Confidence 3457788999999988887777764 34678889999988887763
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.72 E-value=4.5 Score=45.71 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.8
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+.+++++||+|.+.
T Consensus 132 ~~~~vliiDE~~~l~ 146 (353)
T 1sxj_D 132 PPYKIIILDEADSMT 146 (353)
T ss_dssp CSCEEEEETTGGGSC
T ss_pred CCceEEEEECCCccC
Confidence 466899999999995
No 192
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=76.54 E-value=1.4 Score=53.81 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=32.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCch
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKT 838 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKT 838 (1269)
.++++++.+|||+|||..++-+.+. .+..++++.||-.--.
T Consensus 21 ~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~ 61 (551)
T 3crv_A 21 NNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFY 61 (551)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHH
T ss_pred cCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHH
Confidence 4578999999999999998766644 4678999999865444
No 193
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.44 E-value=1.5 Score=51.88 Aligned_cols=103 Identities=17% Similarity=0.019 Sum_probs=76.0
Q ss_pred cccCCceEEeccCCCCchHHHHHHHh-----cCCcEEEEcchHHHHHHHHHHHhcc-CC---CceeeecceeeeccCCC-
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALERFL-----SAESGVYCGPLKMLATEVFKKSNDR-GT---PCDLITGEEKKFIQGEE- 890 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~l~-----~~~~~lil~Ptr~La~Qi~~~l~~~-g~---~v~~~~G~~~~~~~~~~- 890 (1269)
++++ ++++.+|||+|||++++..+. .+.+++|++|+++|+.|++++++++ +. ++..++|+....+....
T Consensus 21 ~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 99 (494)
T 1wp9_A 21 CKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW 99 (494)
T ss_dssp GGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH
T ss_pred HhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc
Confidence 3445 888888888888887733322 3789999999999999999999775 54 67778887543221111
Q ss_pred CCCCEEEEcccccc--------CCCCeeEEEEecccccccCC
Q psy12699 891 KPANHVACTVEMTS--------VNIPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 891 ~~~~Ivv~T~e~~~--------~l~~~~~lViDEah~~~d~~ 924 (1269)
...+|+|+|++.+. .+.+++++|+||||++.+..
T Consensus 100 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 141 (494)
T 1wp9_A 100 ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY 141 (494)
T ss_dssp HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC
T ss_pred cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC
Confidence 15799999988443 26789999999999997543
No 194
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=76.41 E-value=1.5 Score=57.23 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCCEEEEe-cHHhHHHHHHHHHhc----CCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccccccCC
Q psy12699 990 PGDCIVCF-SKNDVYTVSRGIESR----GTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRG 1064 (1269)
Q Consensus 990 ~g~~iv~~-s~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~l~~~g 1064 (1269)
.+.++||+ +++.++.+++.|.+. +.++..+ .|
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l-------------------------------------------~G 667 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVL-------------------------------------------MG 667 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------------------------
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEE-------------------------------------------ec
Confidence 45777777 888999999998875 2222221 13
Q ss_pred ceeEEEcCCCCHHhHHHHhhhccCCC-CCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccCCHhHHHHH
Q psy12699 1065 TEVAVIYGSLPPTTKLAQASKFNDPD-NPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQI 1142 (1269)
Q Consensus 1065 i~v~~~Hg~l~~~eR~~v~~~F~~~~-g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR 1142 (1269)
.....+||+|++++|.+++++|+ + |+++|||||+++++|||+ ++++||+||. |.+..+|+||
T Consensus 668 ~~~~~~hg~m~~~eR~~il~~Fr--~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~--------------p~s~~~~iQr 731 (936)
T 4a2w_A 668 RGRRDQTTGMTLPSQKGVLDAFK--TSKDNRLLIATSVADEGIDIVQCNLVVLYEY--------------SGNVTKMIQV 731 (936)
T ss_dssp ----------------------------CCSEEEEECC------CCCCSEEEEESC--------------CSCSHHHHCC
T ss_pred CCCcccCCCCCHHHHHHHHHHhh--ccCCeeEEEEeCchhcCCcchhCCEEEEeCC--------------CCCHHHHHHh
Confidence 33566799999999999999999 7 999999999999999999 9999999998 8899999999
Q ss_pred hcccCCCCCccccccCCCC
Q psy12699 1143 AGRAGRFNTHFEKLAGSHP 1161 (1269)
Q Consensus 1143 ~GRaGR~G~~g~~~~~~~p 1161 (1269)
+|| ||. ++|.++....+
T Consensus 732 ~GR-GR~-~~g~vi~Li~~ 748 (936)
T 4a2w_A 732 RGR-GRA-AGSKCILVTSK 748 (936)
T ss_dssp ---------CCCEEEEESC
T ss_pred cCC-CCC-CCCEEEEEEeC
Confidence 999 998 66777554444
No 195
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=76.40 E-value=10 Score=43.54 Aligned_cols=97 Identities=6% Similarity=0.081 Sum_probs=49.7
Q ss_pred CCcEEEEcchHHHHHHHHHHHhcc----C--CCcee--eecceeeeccCCCCCCCEEEEcccccc-CCCCeeEEEEeccc
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDR----G--TPCDL--ITGEEKKFIQGEEKPANHVACTVEMTS-VNIPYEVAVIDEIQ 918 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~----g--~~v~~--~~G~~~~~~~~~~~~~~Ivv~T~e~~~-~l~~~~~lViDEah 918 (1269)
+.++++++|++.-|.+++++++.+ . .+-.. ........ ..+..|.+.+..-.. .-.+.+++|+||+|
T Consensus 208 g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~~~~~~~~~~I~f----~nGs~i~~lsa~~~slrG~~~~~viiDE~a 283 (385)
T 2o0j_A 208 DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIEL----DNGSSIGAYASSPDAVRGNSFAMIYIEDCA 283 (385)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSCCEEEECSSEEEE----TTSCEEEEEECSHHHHHTSCCSEEEEESGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhhhhccCCccEEEe----CCCCEEEEEECCCCCccCCCCCEEEechhh
Confidence 568999999999999888776532 1 01000 11111111 113444443321111 23467899999999
Q ss_pred ccccCCchhHHHHHHhcc---CcceEEEEeecCCh
Q psy12699 919 MMRDITRGWAWTRALLGL---MAKEIHVCGEAGAV 950 (1269)
Q Consensus 919 ~~~d~~rg~~~~~~ll~l---~~~~~~l~~s~~~~ 950 (1269)
...+. ...|..+.-.+ ....+.+++++...
T Consensus 284 ~~~~~--~el~~al~~~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 284 FIPNF--HDSWLAIQPVISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp GSTTH--HHHHHHHHHHHHSTTCCEEEEEECCCSS
T ss_pred hcCCC--HHHHHHHHHHhhcCCCCcEEEEeCCCCc
Confidence 98531 22343332222 22355555665444
No 196
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.17 E-value=1.1 Score=47.28 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.3
Q ss_pred cCceEEEEECCCCCCcchHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~a 810 (1269)
.+.+++++.||+||||+||+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 45678999999999999984
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=75.73 E-value=3.4 Score=46.75 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.5
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||+|.+..
T Consensus 106 ~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTD 122 (334)
T ss_dssp TSSCEEEEESCGGGBCH
T ss_pred cCCcEEEEECchhhcCH
Confidence 45789999999999953
No 198
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=75.52 E-value=1.4 Score=54.49 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCHHhHHHHhhhccCCCCCeeEEEEcC--cccccccc---CceEEEEcCCCCCC
Q psy12699 1073 SLPPTTKLAQASKFNDPDNPCKVMVATD--AIGMGLNL---SIRRVIFYSLIKPS 1122 (1269)
Q Consensus 1073 ~l~~~eR~~v~~~F~~~~g~~~VLVaTd--v~~~GIDi---~v~~VI~~~~~k~~ 1122 (1269)
+++..+|..+++.|+ +.-.||++|. .+..|||+ ..+.||..+++.+.
T Consensus 478 ~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~ 529 (620)
T 4a15_A 478 GIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPR 529 (620)
T ss_dssp TCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEEEESSCCCCC
T ss_pred CCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCC
Confidence 344568899999998 4567999975 99999999 57899999986553
No 199
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.44 E-value=4.9 Score=45.55 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=17.9
Q ss_pred CCCeeEEEEecccccccCCchhHHHHHHhccC
Q psy12699 906 NIPYEVAVIDEIQMMRDITRGWAWTRALLGLM 937 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~ 937 (1269)
..+.+++|+||+|.+ |......+.+.+...+
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHST
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhc
Confidence 457889999999996 4332223334444433
No 200
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=74.49 E-value=3.3 Score=55.57 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=36.1
Q ss_pred CCceEEeccCCCCchHHHHHHH----hcC------CcEEEEcchHHHHHHHHHHHhc
Q psy12699 824 GPLKIHAGPTNSGKTYHALERF----LSA------ESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~l----~~~------~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
+++++|.|.-|||||.+.+.++ ..+ .+++++.+|+..|.++.+++.+
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6788888888888887763332 222 4789999999999999988864
No 201
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.39 E-value=5.5 Score=47.99 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=14.3
Q ss_pred CCeeEEEEecccccccCC
Q psy12699 907 IPYEVAVIDEIQMMRDIT 924 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~~ 924 (1269)
.+..+++|||+|.+....
T Consensus 147 ~~~~vliIDEid~l~~~~ 164 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD 164 (516)
T ss_dssp TTSEEEEECSGGGCCTTS
T ss_pred CCCeEEEEECCCccchhh
Confidence 467899999999996533
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=74.30 E-value=2.1 Score=50.18 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.++++++|++|+|||+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt 113 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTT 113 (433)
T ss_dssp SSEEEEECCCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467888999999999996
No 203
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=74.12 E-value=1.8 Score=53.83 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=28.4
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
...++.||+|+|||+.....+... +..|+.+++++||.
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l---~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQA---VKQGLKVLCCAPSN 243 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH---HHTTCCEEEEESSH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEcCch
Confidence 367899999999999754433222 34688999999974
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.86 E-value=4.7 Score=46.60 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=11.1
Q ss_pred eeEEEEecccccc
Q psy12699 909 YEVAVIDEIQMMR 921 (1269)
Q Consensus 909 ~~~lViDEah~~~ 921 (1269)
..+|+|||+|.+.
T Consensus 208 ~~il~iDEid~l~ 220 (389)
T 3vfd_A 208 PSIIFIDQVDSLL 220 (389)
T ss_dssp SEEEEEETGGGGC
T ss_pred CeEEEEECchhhc
Confidence 3699999999984
No 205
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.66 E-value=0.89 Score=57.25 Aligned_cols=71 Identities=25% Similarity=0.363 Sum_probs=61.9
Q ss_pred CceeEEEcCC--------CCHHhHHHHhhhccCCCCCeeEEEEcCcccccccc-CceEEEEcCCCCCCcccCCccccccC
Q psy12699 1064 GTEVAVIYGS--------LPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLIKPSLNEKGEREIDLI 1134 (1269)
Q Consensus 1064 gi~v~~~Hg~--------l~~~eR~~v~~~F~~~~g~~~VLVaTdv~~~GIDi-~v~~VI~~~~~k~~~~~~G~~~~~p~ 1134 (1269)
|+++..+||+ |++++|++++++|+ +|+.+|||||+++++|||+ ++++||++|+ |.
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~--~g~~~VLVaT~~~~~GIDip~v~~VI~~d~--------------p~ 493 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR--TGKINLLIATTVAEEGLDIKECNIVIRYGL--------------VT 493 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHC--C---CCSEEECSCCTTSCCCSCCCCEEESC--------------CC
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHh--cCCCcEEEEccccccCCccccCCEEEEeCC--------------CC
Confidence 4557888988 99999999999999 9999999999999999999 9999999998 88
Q ss_pred CHhHHHHHhcccCCCC
Q psy12699 1135 SVSAALQIAGRAGRFN 1150 (1269)
Q Consensus 1135 s~~~y~QR~GRaGR~G 1150 (1269)
|+.+|+||+|||||.|
T Consensus 494 s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 494 NEIAMVQARGRARADE 509 (699)
T ss_dssp CHHHHHHHHTTSCSSS
T ss_pred CHHHHHHHcCCCCCCC
Confidence 9999999999987766
No 206
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=73.29 E-value=2.2 Score=53.34 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=32.0
Q ss_pred CCceEEeccCCCCchHHHHHH---Hh-----cCCcEEEEcchHHHHHHHHHHHhc
Q psy12699 824 GPLKIHAGPTNSGKTYHALER---FL-----SAESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~l~~---l~-----~~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
+.+++|.|+.|||||.+.... +. ...+++++++|+..|.++.+++.+
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 445666666666666554221 11 236789999999999999999864
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.08 E-value=2.1 Score=41.81 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=17.3
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..+.++++.+|+|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45778999999999999886
No 208
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.96 E-value=1.5 Score=57.89 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=29.6
Q ss_pred ccCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 790 SISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.+++++++||||||||..+++.+... ...|..+++.+||
T Consensus 68 il~g~dvlv~apTGSGKTl~~lp~l~~~---~~~~~~~lil~Pt 108 (1054)
T 1gku_B 68 ILRKESFAATAPTGVGKTSFGLAMSLFL---ALKGKRCYVIFPT 108 (1054)
T ss_dssp HHTTCCEECCCCBTSCSHHHHHHHHHHH---HTTSCCEEEEESC
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHH---hhcCCeEEEEecc
Confidence 3467889999999999998445544322 2346778888887
No 209
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.74 E-value=1.5 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=13.7
Q ss_pred cCceEEEEECCCCCCcchHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~a 810 (1269)
|+.++++++||||||||+-+
T Consensus 1 m~~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCcCCHHHHH
Confidence 34567777888888888753
No 210
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=71.90 E-value=6 Score=48.55 Aligned_cols=95 Identities=7% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCC--C--ce--ee--ecceeeeccCCCCCCCEEEEcc--ccccCCCCeeEEEEecc
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGT--P--CD--LI--TGEEKKFIQGEEKPANHVACTV--EMTSVNIPYEVAVIDEI 917 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~--~--v~--~~--~G~~~~~~~~~~~~~~Ivv~T~--e~~~~l~~~~~lViDEa 917 (1269)
+.++++++|++..|.++++.++..-. + +. .. +...... ..+..|.+.+. +.+ .-.+.+++|+||+
T Consensus 208 ~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~i~~----~nGs~i~~~s~~~~~l-rG~~~~~~iiDE~ 282 (592)
T 3cpe_A 208 DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIEL----DNGSSIGAYASSPDAV-RGNSFAMIYIEDC 282 (592)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSEEEE----TTSCEEEEEECCHHHH-HHSCCSEEEEETG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCccEEEe----cCCCEEEEEeCCCCCc-cCCCcceEEEehh
Confidence 45899999999999999877754211 1 00 00 1111110 11333443331 111 1236789999999
Q ss_pred cccccCCchhHHHHHHhccC---cceEEEEeecCC
Q psy12699 918 QMMRDITRGWAWTRALLGLM---AKEIHVCGEAGA 949 (1269)
Q Consensus 918 h~~~d~~rg~~~~~~ll~l~---~~~~~l~~s~~~ 949 (1269)
|...+. ...|..+.-.+. ...+.+++++..
T Consensus 283 ~~~~~~--~~l~~~~~~~l~~~~~~~ii~isTP~~ 315 (592)
T 3cpe_A 283 AFIPNF--HDSWLAIQPVISSGRRSKIIITTTPNG 315 (592)
T ss_dssp GGCTTH--HHHHHHHHHHHSSSSCCEEEEEECCCT
T ss_pred ccCCch--hHHHHHHHHHhccCCCceEEEEeCCCC
Confidence 998542 134443332332 234555565544
No 211
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=71.86 E-value=2.5 Score=45.12 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=26.3
Q ss_pred cccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
+..|+-+++.+|+|+|||..+++. ...+.+++|+.- .+-..++.+++...|.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~-e~~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL-EEHPVQVRQNMAQFGW 75 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES-SSCHHHHHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHcCC
Confidence 444555555666666665544211 123566777652 2223456666655554
No 212
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=71.65 E-value=5.5 Score=47.01 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=11.4
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+-.+++|||+|++..
T Consensus 106 ~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 106 RRTILFVDEVHRFNK 120 (447)
T ss_dssp CCEEEEEETTTCC--
T ss_pred CCcEEEEeChhhhCH
Confidence 456999999999954
No 213
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.27 E-value=4 Score=45.71 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=13.1
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+.++++|||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 477899999999995
No 214
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=70.40 E-value=3 Score=52.61 Aligned_cols=46 Identities=13% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CceEEeccCCCCchHHHHH---HHhc-----CCcEEEEcchHHHHHHHHHHHhc
Q psy12699 825 PLKIHAGPTNSGKTYHALE---RFLS-----AESGVYCGPLKMLATEVFKKSND 870 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~l~---~l~~-----~~~~lil~Ptr~La~Qi~~~l~~ 870 (1269)
.+++|.|+.|||||.+... .+.. ..+++++..|+..|.++.+|+.+
T Consensus 25 g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 25 GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3455555555555544311 1121 35788999999999999888754
No 215
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.32 E-value=1.6 Score=44.51 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=13.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.++++|+.|||||++
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678888888888886
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=70.10 E-value=2 Score=43.72 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.5
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
++++.+.++||+|||||+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567888999999999984
No 217
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=69.80 E-value=2.6 Score=51.78 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=26.5
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhccc------ccCCceEEeccC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGV------YCGPLKIHAGPT 833 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l------~~g~~vlv~apT 833 (1269)
+.++++++||||||.+++..+..-.+.- ..++.+++.+||
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~ 244 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADR 244 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCC
Confidence 4568899999999999765442211110 146789999997
No 218
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.56 E-value=3.8 Score=42.52 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=19.1
Q ss_pred cccCceEEEEECCCCCCcchHHHHHH
Q psy12699 789 RSISRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 789 ~~~~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
..++++.++++||+|+|||+. +..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL-~~~L 39 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHI-KNAL 39 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHH-HHHH
T ss_pred CCCCCCEEEEECcCCCCHHHH-HHHH
Confidence 345788999999999999995 4444
No 219
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=69.41 E-value=2.3 Score=51.72 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=27.6
Q ss_pred EcCCCCHHhHHHHhhhccCCCCCeeEEE--EcCcccccccc-C----ceEEEEcCCCCCC
Q psy12699 1070 IYGSLPPTTKLAQASKFNDPDNPCKVMV--ATDAIGMGLNL-S----IRRVIFYSLIKPS 1122 (1269)
Q Consensus 1070 ~Hg~l~~~eR~~v~~~F~~~~g~~~VLV--aTdv~~~GIDi-~----v~~VI~~~~~k~~ 1122 (1269)
.|+.. .+|+++++.|+ ++. .||+ ||+.+.+|||+ + +++||+.+++.+.
T Consensus 411 ~q~~~--~~~~~~l~~f~--~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~ 465 (540)
T 2vl7_A 411 EENKK--TRHEEVLELMK--TGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPN 465 (540)
T ss_dssp ESTTT--CCHHHHHHHHH--TSC-CEEEEEC---------------CEEEEEEESCCCCC
T ss_pred ecCCC--CcHHHHHHHHh--cCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCC
Confidence 34443 57889999999 543 5766 88999999999 5 8999999997654
No 220
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.80 E-value=2.5 Score=41.23 Aligned_cols=20 Identities=15% Similarity=-0.105 Sum_probs=17.2
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..+.++++.+|+|+|||.++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35678999999999999886
No 221
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.15 E-value=1.9 Score=43.07 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.5
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
.+++++|++|||||+.
T Consensus 2 ~~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 2 KVILITGMPGSGKSEF 17 (179)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3577888888888885
No 222
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=68.04 E-value=2.5 Score=51.97 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=47.4
Q ss_pred ceEEeccCCCCchHHH-HHHHhcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccCCCCCCCEEEEccc-cc
Q psy12699 826 LKIHAGPTNSGKTYHA-LERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGEEKPANHVACTVE-MT 903 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~-l~~l~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~~~~~~~Ivv~T~e-~~ 903 (1269)
..++.|+-|.|||.+. +....-..++++++|+.+-+..+.+...+. +-+..|+ ..
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~~-----------------------i~~~~Pd~~~ 250 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEK-----------------------FRFIAPDALL 250 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGGG-----------------------CCBCCHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhCC-----------------------eEEeCchhhh
Confidence 4689999999999665 211111346799999999887665544320 1122233 22
Q ss_pred cCCCCeeEEEEecccccc
Q psy12699 904 SVNIPYEVAVIDEIQMMR 921 (1269)
Q Consensus 904 ~~l~~~~~lViDEah~~~ 921 (1269)
....+.+++|||||=.+-
T Consensus 251 ~~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 251 ASDEQADWLVVDEAAAIP 268 (671)
T ss_dssp HSCCCCSEEEEETGGGSC
T ss_pred hCcccCCEEEEEchhcCC
Confidence 345579999999999883
No 223
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=67.84 E-value=6.4 Score=44.80 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.6
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
.+++.||.|+|||..+
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999776
No 224
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=67.30 E-value=2.1 Score=43.81 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=14.6
Q ss_pred CceEEEEECCCCCCcchHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~a 810 (1269)
+.+.++++|++|||||+++
T Consensus 2 ~~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp -CEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4467888999999999863
No 225
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.37 E-value=3.2 Score=50.70 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
..++.+++.|+.|+|||+. +..++... ...|..+++++|||
T Consensus 202 ~~~~~~~I~G~pGTGKTt~-i~~l~~~l--~~~g~~Vl~~ApT~ 242 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTT-TKAVADLA--ESLGLEVGLCAPTG 242 (574)
T ss_dssp TTCSEEEEECCTTSCHHHH-HHHHHHHH--HHTTCCEEEEESSH
T ss_pred HhCCEEEEEcCCCCCHHHH-HHHHHHHH--HhcCCeEEEecCcH
Confidence 3568899999999999996 44443322 23578999999987
No 226
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=65.29 E-value=2.5 Score=42.63 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=11.2
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|+.|||||+.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34566777777777774
No 227
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.05 E-value=4.4 Score=50.49 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=40.3
Q ss_pred cccCC-ceEEeccCCCCchHHHHHHHhc-CCcEEEEcchHHHHHHHHHHHhccC
Q psy12699 821 VYCGP-LKIHAGPTNSGKTYHALERFLS-AESGVYCGPLKMLATEVFKKSNDRG 872 (1269)
Q Consensus 821 l~~g~-~vlv~apTGsGKTl~~l~~l~~-~~~~lil~Ptr~La~Qi~~~l~~~g 872 (1269)
+..|. ...+.+.||||||++.-..+.+ .+..|+++|.+.+|.|+++.++.+.
T Consensus 28 ~~~~~~~~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 28 IQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp HHTTCSEEEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred HhcCCCcEEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHc
Confidence 44454 4678899999999876433333 5679999999999999999998863
No 228
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=64.30 E-value=6.3 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=12.9
Q ss_pred CceEEeccCCCCchHHH
Q psy12699 825 PLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~ 841 (1269)
+++++.+|+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 66778888888887765
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.26 E-value=2.4 Score=46.14 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=13.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..+.++||||||||+-
T Consensus 24 ~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp SSEEEEEECSTTCSHHHH
T ss_pred CCCEEEEECCCCccHHHH
Confidence 566778888888888884
No 230
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=63.93 E-value=12 Score=37.11 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=51.1
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEcccc--ccCCCCeeEEEEe
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVEM--TSVNIPYEVAVID 915 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~--~~~l~~~~~lViD 915 (1269)
.+.+++|.++++.-+.++++.+.+.|.++..++|+....+.. .....+|+|+|.-. --.+.+++++|.-
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~ 110 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINY 110 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEe
Confidence 467899999999999999999999999999999975432221 23367899999321 1235678887753
No 231
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=63.86 E-value=2.9 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=16.4
Q ss_pred CceEEEEECCCCCCcchHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHAL 811 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al 811 (1269)
+.++++++||||||||+.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34688999999999999644
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=63.83 E-value=6.7 Score=41.68 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=23.9
Q ss_pred ccCCceEEeccCCCCchHHHHHH----Hhc-CCcEEEEcchHHHHHHHHHHHhccCC
Q psy12699 822 YCGPLKIHAGPTNSGKTYHALER----FLS-AESGVYCGPLKMLATEVFKKSNDRGT 873 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~l~~----l~~-~~~~lil~Ptr~La~Qi~~~l~~~g~ 873 (1269)
..|.-+++.|++|+|||..+++. ..+ +..++|+.- -+-..|+.+++...+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~-E~~~~~~~~~~~~~~~ 83 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL-EERARDLRREMASFGW 83 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES-SSCHHHHHHHHHTTTC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc-cCCHHHHHHHHHHcCC
Confidence 33444455555555555443221 122 566777652 1223455566655444
No 233
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=63.82 E-value=11 Score=37.97 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=51.1
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEcccc--ccCCCCeeEEEE
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVEM--TSVNIPYEVAVI 914 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~--~~~l~~~~~lVi 914 (1269)
..+++|.++++.-+..+++.+.+.|.++..++|+....+.. .+...+|+|+|.-. --.+..++++|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN 108 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE
Confidence 57899999999999999999999999999999975433221 23467899999332 223668888885
No 234
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=63.00 E-value=10 Score=43.70 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.3
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
+--++||||+|.+.+
T Consensus 138 ~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 138 HYLLVILDEFQSMLS 152 (412)
T ss_dssp CEEEEEEESTHHHHS
T ss_pred CeEEEEEeCHHHHhh
Confidence 456999999999954
No 235
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.69 E-value=14 Score=46.43 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc---ccccCCce
Q psy12699 991 GDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR---GIESRGTE 1066 (1269)
Q Consensus 991 g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~---~l~~~gi~ 1066 (1269)
..++||+ +++.++.+++.|.+.|.++.++|+.+.+.+|......+ .....+++|+..++|.++. .....|.
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag----~~g~VlIATdmAgRG~DI~l~~~V~~~gg- 507 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAG----QKGAVTIATNMAGRGTDIKLGEGVKELGG- 507 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTT----STTCEEEEETTSSTTCCCCCCTTSGGGTS-
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcC----CCCeEEEeCCccccCcCccccchhhhcCC-
Confidence 3578877 99999999999999999999999998766665433222 2346899999999999987 2333343
Q ss_pred eEEEcCCCCHHhHHHHhhhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFN 1087 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~ 1087 (1269)
..+++-.+|.+.|..+...=|
T Consensus 508 l~VIn~d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 508 LAVVGTERHESRRIDNQLRGR 528 (844)
T ss_dssp EEEEESSCCSSHHHHHHHHTT
T ss_pred cEEEEecCCCCHHHHHhhcCc
Confidence 367788888887776655433
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.33 E-value=3.1 Score=43.17 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.2
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
|+.+.++++|+.|||||++
T Consensus 2 m~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCCEEEEEECCTTSSHHHH
T ss_pred CCCeEEEEEcCCCCCHHHH
Confidence 3557889999999999997
No 237
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=61.96 E-value=2.8 Score=43.88 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.1
Q ss_pred EEEEECCCCCCcchHH
Q psy12699 795 IIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~a 810 (1269)
++++.||+||||+|||
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999984
No 238
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.78 E-value=3 Score=41.96 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.1
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.++++|++|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 4678889999999886
No 239
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.39 E-value=3.3 Score=41.88 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=10.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||++
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345788899999999996
No 240
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=61.38 E-value=11 Score=39.30 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=51.5
Q ss_pred hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccc--cccCCCCeeEEEE
Q psy12699 846 LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVE--MTSVNIPYEVAVI 914 (1269)
Q Consensus 846 ~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e--~~~~l~~~~~lVi 914 (1269)
..+.+++|.+|++.-+.++++.+.+.|..+..++|+....++. .+...+|+|+|.- .--.+.+++++|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 105 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE
Confidence 3478999999999999999999999999999999975433222 2346889999932 2223567887773
No 241
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=61.28 E-value=4.5 Score=50.08 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.8
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+...++.||+|+|||+.....+ .... -..++.+++++||+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i-~~l~-~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIV-YHLA-RQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHH-HHHH-TSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHH-HHHH-HcCCCeEEEEeCcH
Confidence 3467899999999999743322 2210 01578999999987
No 242
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=61.27 E-value=18 Score=38.29 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=24.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
+++.+++.|+.|||||++ ...+...... |.+++.....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~-~~~l~~~l~~---~~~~~~~~~p~ 63 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV-INEVYHRLVK---DYDVIMTREPG 63 (229)
T ss_dssp CCEEEEEECCTTSCHHHH-HHHHHHHHTT---TSCEEEECTTT
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHhc---CCCceeecCCC
Confidence 567889999999999998 4444222211 44555554443
No 243
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.10 E-value=3.2 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=14.5
Q ss_pred ccccccCceEEEEECCCCCCcchH
Q psy12699 786 PNARSISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 786 ~~~~~~~r~~v~~~g~TGsGKT~~ 809 (1269)
|.........+++.|+.|||||++
T Consensus 9 p~~~~~~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 9 PVPESPKGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp -----CCCCEEEEECCTTSSHHHH
T ss_pred CCCCCCCCeEEEEECCCCCCHHHH
Confidence 333333445678888889999886
No 244
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.06 E-value=3.7 Score=42.81 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++++++++||+|||||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467889999999999995
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.86 E-value=3.7 Score=41.27 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.6
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
++++.+.++|+.|||||+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TTSEEEEEECSTTSCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 4567788999999999995
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=60.73 E-value=4.2 Score=42.08 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=16.8
Q ss_pred cCceEEEEECCCCCCcchHHHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALE 812 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~ 812 (1269)
...+.++++||||+|||+.|+.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHH
T ss_pred ECCEEEEEECCCCCCHHHHHHH
Confidence 4567788899999999886543
No 247
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=60.62 E-value=13 Score=36.73 Aligned_cols=69 Identities=9% Similarity=-0.046 Sum_probs=50.9
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEcccc--ccCCCCeeEEEEe
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVEM--TSVNIPYEVAVID 915 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~--~~~l~~~~~lViD 915 (1269)
.+.+++|.++++.-+.++++.+++.+..+..++|+....+.. .....+|+|+|.-. --.+..++++|.-
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 105 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEe
Confidence 467899999999999999999999899999999875433221 23467899999332 1235677777763
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=60.41 E-value=3.4 Score=41.89 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=14.3
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..++++|+.|||||++
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678889999999986
No 249
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=60.01 E-value=5.3 Score=41.35 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.7
Q ss_pred cCCceEEeccCCCCchHHHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHALE 843 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~ 843 (1269)
.|+-+++.+|||+|||..++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467789999999999966543
No 250
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=59.76 E-value=25 Score=38.91 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=14.3
Q ss_pred CCCeeEEEEeccccccc
Q psy12699 906 NIPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 906 l~~~~~lViDEah~~~d 922 (1269)
..+.+++||||+|+|..
T Consensus 80 ~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp SSSSEEEEETTGGGBCH
T ss_pred cCCceEEEeccHHHhCH
Confidence 45789999999999953
No 251
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.42 E-value=3.6 Score=42.48 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.++|++|||||+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999996
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.89 E-value=3.5 Score=44.59 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=11.4
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
+++++|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 567788888888875
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=58.53 E-value=3.6 Score=41.42 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.++||.|||||+-
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 567889999999999995
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=58.30 E-value=3.6 Score=41.58 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=13.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||+.
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 445677888888888885
No 255
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=58.26 E-value=16 Score=45.20 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCcccc---ccccCCce
Q psy12699 991 GDCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFR---GIESRGTE 1066 (1269)
Q Consensus 991 g~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~---~l~~~gi~ 1066 (1269)
..++||+ +++.++.+++.|.+.|.++.++++...+.++......+. ....+++|+..++|.++. .....|.
T Consensus 475 qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~----~g~VtVATdmAgRGtDI~lg~~V~~~Gg- 549 (822)
T 3jux_A 475 QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ----KGMVTIATNMAGRGTDIKLGPGVAELGG- 549 (822)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS----TTCEEEEETTTTTTCCCCCCTTTTTTTS-
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC----CCeEEEEcchhhCCcCccCCcchhhcCC-
Confidence 3677877 999999999999999999999999844433332222222 235889999999999986 4444443
Q ss_pred eEEEcCCCCHHhHHHHhhhcc
Q psy12699 1067 VAVIYGSLPPTTKLAQASKFN 1087 (1269)
Q Consensus 1067 v~~~Hg~l~~~eR~~v~~~F~ 1087 (1269)
..+++-.+|...|..+...=|
T Consensus 550 lhVInte~Pes~r~y~qriGR 570 (822)
T 3jux_A 550 LCIIGTERHESRRIDNQLRGR 570 (822)
T ss_dssp CEEEESSCCSSHHHHHHHHTT
T ss_pred CEEEecCCCCCHHHHHHhhCc
Confidence 357788999887776655433
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.24 E-value=3.9 Score=42.27 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 346789999999999996
No 257
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=57.35 E-value=8.2 Score=43.02 Aligned_cols=16 Identities=19% Similarity=0.191 Sum_probs=11.8
Q ss_pred CCCCeeEEEEeccccc
Q psy12699 905 VNIPYEVAVIDEIQMM 920 (1269)
Q Consensus 905 ~l~~~~~lViDEah~~ 920 (1269)
.+.+.++|||||++..
T Consensus 211 ~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 211 AVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHTSSEEEEETCCC-
T ss_pred HhcCCCEEEEcCCCCC
Confidence 3456789999999654
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=57.25 E-value=3.6 Score=42.69 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.6
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.++++|++|||||+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCEEEECCTTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 567889999999999996
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=56.99 E-value=4.9 Score=44.67 Aligned_cols=19 Identities=53% Similarity=0.726 Sum_probs=14.6
Q ss_pred ceEEEEECCCCCCcchHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHAL 811 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al 811 (1269)
.++++++||||||||+-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAI 28 (316)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCccCHHHHHH
Confidence 3567889999999998643
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=56.95 E-value=3.9 Score=41.43 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.7
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|++|||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34677899999999996
No 261
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=56.72 E-value=16 Score=36.64 Aligned_cols=69 Identities=7% Similarity=-0.164 Sum_probs=51.0
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccccc--cCCCCeeEEEEe
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVEMT--SVNIPYEVAVID 915 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e~~--~~l~~~~~lViD 915 (1269)
.+.+++|.++++.-+..+++.+.+.|.++..++|+....+.. .+...+|+|+|.-.. -.+..++++|.-
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~ 106 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 106 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEE
Confidence 467899999999999999999999999999999875433221 234678999993211 135677887753
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=56.69 E-value=5 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567889999999999995
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.61 E-value=3.8 Score=41.73 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.4
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|+.|||||++
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999996
No 264
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=56.48 E-value=13 Score=37.73 Aligned_cols=68 Identities=10% Similarity=-0.035 Sum_probs=44.9
Q ss_pred cCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccc--cccCCCCeeEEEE
Q psy12699 847 SAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVE--MTSVNIPYEVAVI 914 (1269)
Q Consensus 847 ~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e--~~~~l~~~~~lVi 914 (1269)
.+.+++|.++++.-+..+++.+++.|.++..++|+....+.. .....+|+|+|.- .--.+..++++|.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN 120 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE
Confidence 357899999999999999999999999999999976543332 1236789999932 1113566777765
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=56.47 E-value=4.2 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++|+.|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467788899999999985
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=56.11 E-value=3.8 Score=42.33 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
++++++|+.|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4788999999999996
No 267
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=55.94 E-value=6.1 Score=50.25 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=29.1
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
.+...++.||+|+|||+... .++..... ..++.++++|||+
T Consensus 370 ~~~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~~ilv~a~tn 410 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNGPVLVCAPSN 410 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHH-HHHHHHHT-TCSSCEEEEESSH
T ss_pred cCCeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCCcEEEEcCcH
Confidence 46788999999999999743 33222100 1578999999997
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=55.41 E-value=4.9 Score=40.76 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=17.1
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
+.|+-+.+++|+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56788899999999998764
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.12 E-value=4.3 Score=40.40 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.9
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567888888888885
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=55.08 E-value=4.2 Score=41.51 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=14.7
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|+.|||||++
T Consensus 9 ~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45788999999999996
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.89 E-value=5.4 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.6
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|+.|||||++
T Consensus 15 ~~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35788999999999997
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=54.32 E-value=5.1 Score=40.74 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.0
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445678888888888885
No 273
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=54.08 E-value=5.4 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.2
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
+++..++++|+.|||||++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp SCCEEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 3567889999999999996
No 274
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=54.04 E-value=17 Score=37.95 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=17.3
Q ss_pred cCceEEEEECCCCCCcchHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~a 810 (1269)
|+++.+++.|+.|||||+++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 67889999999999999983
No 275
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=53.84 E-value=6.2 Score=50.22 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSG 836 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsG 836 (1269)
.+...++.||+|+|||+.....+ .... -..++.+++++||+..
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i-~~l~-~~~~~~ILv~a~tn~A 416 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIV-YHLS-KIHKDRILVCAPSNVA 416 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHH-HHHH-HHHCCCEEEEESSHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHH-HHHH-hCCCCeEEEEcCcHHH
Confidence 46678999999999999743332 1110 0157899999998743
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=53.78 E-value=5.1 Score=41.22 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.7
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++|+.|||||++
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 46788999999999997
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.65 E-value=3.8 Score=42.39 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.4
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
++.+.++||+|||||+-
T Consensus 4 g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp -CCEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46678899999999984
No 278
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=53.60 E-value=9.1 Score=40.14 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.8
Q ss_pred cCceEEEEECCCCCCcchHH
Q psy12699 791 ISRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~a 810 (1269)
|+++.+++.|+.|||||+|+
T Consensus 1 m~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778999999999999983
No 279
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.11 E-value=5.5 Score=41.02 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+...++++|+.|||||++
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678899999999996
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=52.78 E-value=4.7 Score=40.93 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.2
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++|+.|||||++
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567888888888886
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.47 E-value=13 Score=47.05 Aligned_cols=16 Identities=50% Similarity=0.490 Sum_probs=14.5
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
++++.+|||+|||.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999876
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.33 E-value=6.7 Score=43.25 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||+.
T Consensus 32 ~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456889999999999996
No 283
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.23 E-value=17 Score=46.77 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=7.6
Q ss_pred eeEEEEecccccc
Q psy12699 909 YEVAVIDEIQMMR 921 (1269)
Q Consensus 909 ~~~lViDEah~~~ 921 (1269)
-.+++|||+|.+.
T Consensus 264 ~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 264 EVILFIDELHTVV 276 (854)
T ss_dssp SEEEEECCC----
T ss_pred CeEEEEecHHHHh
Confidence 4589999999985
No 284
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=52.13 E-value=5 Score=45.80 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=15.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..+.++||||||||+-
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999995
No 285
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.77 E-value=20 Score=39.98 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=19.7
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----HhcCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FLSAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~~~~~~lil~ 855 (1269)
|+..|.-+++.|++|+|||..+++. ...+.+++|+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4555555666666666666544221 12355677776
No 286
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.62 E-value=8.2 Score=43.44 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.9
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++.+++++|||||||.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999665
No 287
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=51.62 E-value=6.4 Score=38.67 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.+.||+|+|||+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999995
No 288
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=51.45 E-value=7.8 Score=45.86 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=26.7
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCC-ceEEeccCCC
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGP-LKIHAGPTNS 835 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~-~vlv~apTGs 835 (1269)
..+++.|+.|+|||+. +..++... ...|. .+++.+|||.
T Consensus 46 ~~~li~G~aGTGKT~l-l~~~~~~l--~~~~~~~il~~a~T~~ 85 (459)
T 3upu_A 46 HHVTINGPAGTGATTL-TKFIIEAL--ISTGETGIILAAPTHA 85 (459)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHH--HHTTCCCEEEEESSHH
T ss_pred CEEEEEeCCCCCHHHH-HHHHHHHH--HhcCCceEEEecCcHH
Confidence 3789999999999996 33332221 12344 7899999863
No 289
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=50.91 E-value=6.9 Score=45.64 Aligned_cols=18 Identities=44% Similarity=0.685 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..++++||||||||+-
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 466889999999999995
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.87 E-value=6 Score=40.81 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++|+.|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999995
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=50.69 E-value=4.9 Score=40.62 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.4
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
++.+++.||+|+|||+-
T Consensus 38 g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp CCEEEECCSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 57789999999999996
No 292
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.60 E-value=6.4 Score=44.08 Aligned_cols=17 Identities=53% Similarity=0.671 Sum_probs=14.3
Q ss_pred eEEEEECCCCCCcchHH
Q psy12699 794 RIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~a 810 (1269)
+.++++||||||||+.+
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999964
No 293
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.28 E-value=9.7 Score=42.36 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=14.5
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++-+++++|||||||.++
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 345788999999999765
No 294
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=50.09 E-value=16 Score=40.32 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=11.4
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
...++++||+|.+.
T Consensus 108 ~p~il~iDEid~l~ 121 (301)
T 3cf0_A 108 APCVLFFDELDSIA 121 (301)
T ss_dssp CSEEEEECSTTHHH
T ss_pred CCeEEEEEChHHHh
Confidence 34799999999874
No 295
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=50.02 E-value=24 Score=44.31 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=52.1
Q ss_pred CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 992 DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 992 ~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.++||+ +++.++.+++.|.+.|.++.++++...+.++......|.. ...+++|+..++|.++..
T Consensus 443 pvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~----G~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 443 PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP----AAVTIATNMAGRGTDIVL 507 (853)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST----TCEEEEESCCSSCSCCCT
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC----CeEEEecccccCCcCccC
Confidence 578877 9999999999999999999999998766666554433432 368899999999999974
No 296
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=49.99 E-value=5.3 Score=42.13 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.1
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..++++|++|||||++
T Consensus 8 ~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4678999999999997
No 297
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=49.96 E-value=6.4 Score=44.38 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.6
Q ss_pred eEEEEECCCCCCcchHH
Q psy12699 794 RIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~a 810 (1269)
++++++||||||||+.+
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 57889999999999964
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=49.92 E-value=6.8 Score=40.15 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=10.7
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++||.|+|||+.
T Consensus 3 pIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 3 PIVISGPSGTGKSTL 17 (186)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456777777777774
No 299
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=49.72 E-value=5.5 Score=40.43 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.2
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.++++|+.|||||++
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4788999999999996
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=49.64 E-value=5.5 Score=40.75 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=14.2
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.++++|+.|||||++
T Consensus 13 ~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999997
No 301
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=49.45 E-value=11 Score=39.32 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.7
Q ss_pred CCee--EEEEecccccc
Q psy12699 907 IPYE--VAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~--~lViDEah~~~ 921 (1269)
.+.+ ++|+||...+.
T Consensus 120 ~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALF 136 (235)
T ss_dssp HCSSCEEEEEETGGGGS
T ss_pred hCCCceEEEEECchHhh
Confidence 3677 99999998765
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.37 E-value=6.8 Score=47.02 Aligned_cols=19 Identities=37% Similarity=0.200 Sum_probs=14.5
Q ss_pred ccCCceEEeccCCCCchHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYH 840 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~ 840 (1269)
..|+++++++|||||||..
T Consensus 258 ~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HTTCCEEEEESTTSSHHHH
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 4577788888888888755
No 303
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.37 E-value=6.8 Score=40.68 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..+.++||+||||||-
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 567889999999999994
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=49.36 E-value=6.2 Score=40.16 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=12.7
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+++.++||.|||||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4567888888888884
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.20 E-value=7.5 Score=41.05 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=12.1
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++||+|||||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999995
No 306
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.00 E-value=5.8 Score=45.60 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=15.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..+.++||||||||+-
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999995
No 307
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=48.72 E-value=21 Score=39.49 Aligned_cols=69 Identities=12% Similarity=0.035 Sum_probs=51.9
Q ss_pred hcCCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccc--cccCCCCeeEEEE
Q psy12699 846 LSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVE--MTSVNIPYEVAVI 914 (1269)
Q Consensus 846 ~~~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e--~~~~l~~~~~lVi 914 (1269)
..+.+++|.++++.-+..+++.+.+.|..+..++|+....++. .+...+|+|+|-- .--.+.+++++|.
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE
Confidence 3478999999999999999999999999999999985433222 2336889999932 2224668888874
No 308
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=48.54 E-value=12 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.3
Q ss_pred ccccCceEEEEECCCCCCcchHH
Q psy12699 788 ARSISRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 788 ~~~~~r~~v~~~g~TGsGKT~~a 810 (1269)
...|+.+.+++.|+.|||||+++
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHH
Confidence 45567889999999999999983
No 309
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=48.46 E-value=6.1 Score=40.89 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456889999999999997
No 310
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=48.46 E-value=14 Score=37.87 Aligned_cols=67 Identities=9% Similarity=-0.061 Sum_probs=49.6
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccc--cccCCCCeeEEEE
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVE--MTSVNIPYEVAVI 914 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e--~~~~l~~~~~lVi 914 (1269)
+++++|.++++.-+.++++.+++.|.++..++|+....+.. .+...+|+|+|.- .--.+.+++++|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN 128 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE
Confidence 56899999999999999999998899999999975432221 2236789999932 2223567777775
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=48.46 E-value=5.9 Score=39.50 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=13.1
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++|+.|||||+.
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578899999999985
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.42 E-value=6.7 Score=41.06 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.4
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..+++.|+.|||||++
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4578899999999997
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.10 E-value=5.9 Score=39.48 Aligned_cols=15 Identities=33% Similarity=0.405 Sum_probs=12.5
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++|+.|||||++
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477889999999986
No 314
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=47.90 E-value=6.3 Score=38.33 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.8
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
.-+++.||+|+|||+.
T Consensus 25 ~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTG 40 (145)
T ss_dssp SCEEEESSTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
Confidence 3478999999999995
No 315
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=47.90 E-value=11 Score=42.30 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=22.2
Q ss_pred ccccCCceEEeccCCCCchHHHHHHHh----c------CCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERFL----S------AESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l~----~------~~~~lil~ 855 (1269)
++..|+-+++.+|+|+|||..+++... . +.+++|+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 455566777777777777766633222 1 45677776
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=47.40 E-value=7.1 Score=40.38 Aligned_cols=18 Identities=50% Similarity=0.375 Sum_probs=14.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++|++|||||+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999995
No 317
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=47.07 E-value=7.2 Score=41.70 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=14.9
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
...+.++|+.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999996
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=46.92 E-value=7.2 Score=38.75 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.9
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.+++.|+.|||||++
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5688999999999996
No 319
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.83 E-value=7.5 Score=40.03 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.|+.|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467889999999999995
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=46.65 E-value=13 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=9.8
Q ss_pred CceEEEEECCCCCCcch
Q psy12699 792 SRRIIFHAGPTNSGKTY 808 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~ 808 (1269)
++.++.+.||+|||||+
T Consensus 29 ~G~~~~l~GpnGsGKST 45 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTT 45 (251)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEEeCCCCCHHH
Confidence 34555566666666665
No 321
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.55 E-value=6.7 Score=40.69 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=15.9
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.+++++.++||.|||||+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp -CCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567889999999999994
No 322
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.42 E-value=8.3 Score=44.03 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=14.6
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+.+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 455777777777777776553
No 323
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.39 E-value=6.5 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=16.9
Q ss_pred CceEEEEECCCCCCcchHHHHHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.++.+.++||||||||+- +..+
T Consensus 259 ~g~~i~I~GptGSGKTTl-L~aL 280 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT-LNAI 280 (511)
T ss_dssp TTCCEEEEESTTSSHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHH
Confidence 355689999999999995 4443
No 324
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=46.24 E-value=6 Score=41.56 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.++||+|||||+-
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999994
No 325
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.23 E-value=8 Score=38.91 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.2
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.+.|+.|||||++
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456778888899999885
No 326
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=46.22 E-value=8.2 Score=39.29 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=17.7
Q ss_pred EEeccCCCCchHHHHHHHhcCCcEEEEcchHHHHHHHHHHH
Q psy12699 828 IHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKS 868 (1269)
Q Consensus 828 lv~apTGsGKTl~~l~~l~~~~~~lil~Ptr~La~Qi~~~l 868 (1269)
++.+++|||||..+.+....+.+++|++.-...-.++.+++
T Consensus 3 lV~Gg~~SGKS~~A~~la~~~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHH
T ss_pred EEECCCCCcHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHH
Confidence 44555555555444332233456778775443333444444
No 327
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.22 E-value=7.8 Score=41.46 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.8
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
...+++.|+.|||||++
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999997
No 328
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=45.98 E-value=7.6 Score=44.79 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.4
Q ss_pred eEEEEECCCCCCcchHHH
Q psy12699 794 RIIFHAGPTNSGKTYHAL 811 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al 811 (1269)
++++++||||||||+.+.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 567889999999998643
No 329
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.85 E-value=12 Score=41.40 Aligned_cols=16 Identities=50% Similarity=0.507 Sum_probs=13.5
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
-+++++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999665
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.78 E-value=7.6 Score=39.76 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.4
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+++.|+.|||||++
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 467889999999986
No 331
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=45.62 E-value=12 Score=43.70 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCceEEeccCCCCchHHH---H-HHHhcCCcEEEEcchHHHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA---L-ERFLSAESGVYCGPLKMLAT 862 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~---l-~~l~~~~~~lil~Ptr~La~ 862 (1269)
..++++.|+||||||... + ..+..+..++++=|-.++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 345666666666665543 1 12223566666668877754
No 332
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=45.61 E-value=7.7 Score=39.40 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=12.8
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+++.++|+.|||||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5677888888888884
No 333
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=45.29 E-value=13 Score=40.01 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=17.0
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..+.++++.+|+|+|||.++
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 34678999999999999887
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.29 E-value=5.6 Score=45.48 Aligned_cols=18 Identities=50% Similarity=0.562 Sum_probs=16.1
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.++||||||||+-
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 577899999999999995
No 335
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=45.25 E-value=7.8 Score=39.32 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.7
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+.++|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999996
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=45.11 E-value=7.4 Score=40.30 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.++++|+.|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999997
No 337
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=45.00 E-value=8.7 Score=39.53 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=17.1
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..++.+++.+|+|||||.++
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 45788999999999999886
No 338
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.95 E-value=7.6 Score=40.91 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.0
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.+++.+.++||.|||||+-
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3577899999999999994
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.90 E-value=7.2 Score=40.61 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=11.9
Q ss_pred EEEECCCCCCcchH
Q psy12699 796 IFHAGPTNSGKTYH 809 (1269)
Q Consensus 796 v~~~g~TGsGKT~~ 809 (1269)
++++|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56889999999996
No 340
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=44.68 E-value=7.8 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=17.9
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+-+.+.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 567888999999999998664
No 341
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=44.63 E-value=8.6 Score=39.98 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.6
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.++++|+.|||||++
T Consensus 24 ~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999997
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=44.59 E-value=6.5 Score=41.23 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.1
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..+++.|+.|||||++
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999997
No 343
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.35 E-value=7.4 Score=39.50 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.9
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+-+.+.+|.|||||..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 456788999999999999775
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.29 E-value=8.7 Score=41.56 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.3
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..++++|+.|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4678899999999986
No 345
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=44.22 E-value=16 Score=38.66 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=13.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+++.|+.|||||++
T Consensus 24 ~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp CCCEEEEECCC---CHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 567899999999999998
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.18 E-value=8.3 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.257 Sum_probs=13.9
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
...+.++|++|||||+.
T Consensus 8 ~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTV 24 (203)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45678899999999985
No 347
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=44.11 E-value=9 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.026 Sum_probs=16.0
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++.+++.+|+|||||.++
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999887
No 348
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=43.81 E-value=9.4 Score=41.63 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.0
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..++.+++.+|+|+|||..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHH
Confidence 345678999999999999776
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.78 E-value=8.8 Score=37.99 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=11.2
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+++.|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 356788888888885
No 350
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=43.71 E-value=6.3 Score=38.24 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=13.3
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
-+++.||+|+|||+.
T Consensus 29 ~vll~G~~GtGKt~l 43 (143)
T 3co5_A 29 PVFLTGEAGSPFETV 43 (143)
T ss_dssp CEEEEEETTCCHHHH
T ss_pred cEEEECCCCccHHHH
Confidence 478999999999995
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=43.66 E-value=9.7 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.8
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++.++++++.|||||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 566899999999999886
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=43.53 E-value=7.7 Score=40.37 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.9
Q ss_pred EEEECCCCCCcchH
Q psy12699 796 IFHAGPTNSGKTYH 809 (1269)
Q Consensus 796 v~~~g~TGsGKT~~ 809 (1269)
++++|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999996
No 353
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=43.44 E-value=33 Score=35.45 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=25.1
Q ss_pred eEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCc
Q psy12699 794 RIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGK 837 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGK 837 (1269)
+.+.+-|.-|||||||+ ..+-.. +..|.+++....+|...
T Consensus 3 kFI~~EG~dGsGKsTq~-~~L~~~---L~~~~~v~~~~eP~~t~ 42 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVI-NEVYHR---LVKDYDVIMTREPGGVP 42 (205)
T ss_dssp EEEEEECCTTSCHHHHH-HHHHHH---HTTTSCEEEEESSTTCH
T ss_pred CEEEEECCCCCcHHHHH-HHHHHH---HHCCCCEEEeeCCCCCh
Confidence 46788999999999983 333111 23466766665555433
No 354
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=43.12 E-value=5.3 Score=42.95 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=7.9
Q ss_pred eeEEEEecccccc
Q psy12699 909 YEVAVIDEIQMMR 921 (1269)
Q Consensus 909 ~~~lViDEah~~~ 921 (1269)
..+++|||+|.+.
T Consensus 99 ~~vl~iDeid~l~ 111 (262)
T 2qz4_A 99 PCIVYIDEIDAVG 111 (262)
T ss_dssp SEEEEEECC----
T ss_pred CeEEEEeCcchhh
Confidence 4689999999984
No 355
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=43.07 E-value=9.6 Score=39.56 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.0
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|+-+++++|+|+|||.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999998765
No 356
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.96 E-value=9.9 Score=40.74 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=11.8
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
.+.+++.+|+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 445667777777777654
No 357
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=42.81 E-value=9.6 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.2
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.++++||+|+|||+.
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 34578999999999996
No 358
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=42.70 E-value=21 Score=42.38 Aligned_cols=47 Identities=13% Similarity=-0.047 Sum_probs=31.1
Q ss_pred ceEEeccCCCCchHHHHHHHh-cCCcEEEEcchHHHHHHHHHHHhccC
Q psy12699 826 LKIHAGPTNSGKTYHALERFL-SAESGVYCGPLKMLATEVFKKSNDRG 872 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~l~~l~-~~~~~lil~Ptr~La~Qi~~~l~~~g 872 (1269)
...+.+-||||||++.-.... .++..++++|....|.|+++.++.+.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 344455555555544322112 25678999999999999999998753
No 359
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=42.56 E-value=10 Score=39.16 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.1
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
+.|+-+++++|+|+|||.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 57888999999999998654
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=42.43 E-value=9.1 Score=40.06 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.5
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999995
No 361
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=42.33 E-value=33 Score=38.62 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=12.6
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
++++||||-.|.+.
T Consensus 156 g~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 156 ELGIAFIDYLQLMS 169 (338)
T ss_dssp TEEEEEEEEEECCC
T ss_pred CCCEEEEechHHhc
Confidence 79999999999984
No 362
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=42.31 E-value=10 Score=39.60 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.4
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
+.++.+.|+.|||||++
T Consensus 4 ~~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTV 20 (218)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35788999999999996
No 363
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=42.04 E-value=17 Score=38.20 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=13.6
Q ss_pred CCeeEEEEecccccccC
Q psy12699 907 IPYEVAVIDEIQMMRDI 923 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d~ 923 (1269)
.+.+++||||...+.+.
T Consensus 118 ~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 118 SRYALLIVDSATALYRT 134 (243)
T ss_dssp SCEEEEEEETSSGGGC-
T ss_pred CCceEEEEeCchHHHHH
Confidence 47899999999988664
No 364
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=41.95 E-value=13 Score=41.21 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.2
Q ss_pred ccCceEEEEECCCCCCcchH
Q psy12699 790 SISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 790 ~~~r~~v~~~g~TGsGKT~~ 809 (1269)
..+++.+.++||+|||||+-
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 34677888999999999994
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.80 E-value=8.5 Score=38.54 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=12.8
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++|+.|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 477899999999995
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.75 E-value=9.5 Score=40.10 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+++.|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367888888888886
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=41.67 E-value=9.4 Score=38.85 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.9
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+++.|+.|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999997
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.51 E-value=11 Score=38.76 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=17.2
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+-+.+.+|+|||||..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 346788899999999998775
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.34 E-value=8.1 Score=39.01 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.3
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.++++|+.|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999986
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=41.24 E-value=8.7 Score=40.18 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.8
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+++.|+.|||||++
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999997
No 371
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=41.16 E-value=17 Score=41.37 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~ 855 (1269)
|+..|+-+++.+|+|+|||..+++.. ..+.+++|+.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45667777888888888877663322 2356777776
No 372
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=41.12 E-value=11 Score=38.90 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.1
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999998765
No 373
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=41.01 E-value=9.6 Score=42.09 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=14.0
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
+.++++.+|+|+|||.++
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446888888888888775
No 374
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=40.91 E-value=10 Score=47.97 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=29.2
Q ss_pred cCceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 791 ISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++++ +..+.||+|||..+..+.+.. .+.|+.+++.+||-
T Consensus 92 lqG~--IaeakTGeGKTLvf~Lp~~L~---aL~G~qv~VvTPTr 130 (997)
T 2ipc_A 92 HEGK--IAEMKTGEGKTLVATLAVALN---ALTGKGVHVVTVND 130 (997)
T ss_dssp HTTS--EEECCSTHHHHHHHHHHHHHH---HTTCSCCEEEESSH
T ss_pred cCCc--eeeccCCCchHHHHHHHHHHH---HHhCCCEEEEeCCH
Confidence 4555 789999999999875555332 25688899999985
No 375
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=40.81 E-value=16 Score=41.42 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=24.5
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~ 855 (1269)
++..|+-+++.+|+|+|||..+++.. ..+.+++|+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45667778888888888887763322 2356777766
No 376
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=40.66 E-value=15 Score=47.99 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=61.0
Q ss_pred CCCEEEEe-cHHhHHHHHHHHHh-cCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 990 PGDCIVCF-SKNDVYTVSRGIES-RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 990 ~g~~iv~~-s~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.+.++||+ +++.++.+++.|.+ .+.++..+||++++.+|...+..|.+..+....|++|+..+.|.++..
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~ 574 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQF 574 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTT
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCccc
Confidence 45777777 89999999999995 599999999999999999999899887767889999999999988874
No 377
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.65 E-value=10 Score=39.78 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=16.7
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.+.+++.||+|+|||+- ...+
T Consensus 52 ~~~~ll~G~~G~GKT~l-a~~l 72 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHL-IHAA 72 (242)
T ss_dssp CSEEEEECSTTSSHHHH-HHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHH
Confidence 46789999999999996 3444
No 378
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=40.60 E-value=13 Score=43.64 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSG 836 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsG 836 (1269)
..-++++|+||||||+. +..++... +..|..+++.-|.|.-
T Consensus 53 ~~h~~i~G~tGsGKs~~-~~~li~~~--~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL-LRELAYTG--LLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHH-HHHHHHHH--HHTTCEEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHH--HHCCCcEEEEeCCCch
Confidence 44568999999999996 44444332 3457788899887743
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.45 E-value=10 Score=40.82 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+...++++|++|||||+.
T Consensus 31 ~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SCEEEEEESCGGGTTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346789999999999996
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=40.39 E-value=8.3 Score=40.16 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.2
Q ss_pred EEEECCCCCCcchH
Q psy12699 796 IFHAGPTNSGKTYH 809 (1269)
Q Consensus 796 v~~~g~TGsGKT~~ 809 (1269)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999997
No 381
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.30 E-value=16 Score=40.59 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.0
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
-.+.++++.+|+|+|||.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999887
No 382
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=40.16 E-value=9.7 Score=40.41 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=19.7
Q ss_pred ceEEeccCCCCchHHH--HH--HH-hcCCcEEEEc
Q psy12699 826 LKIHAGPTNSGKTYHA--LE--RF-LSAESGVYCG 855 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~--l~--~l-~~~~~~lil~ 855 (1269)
-+.+.+|+|||||... +. .+ ..+..++++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4578999999998776 22 22 3455555554
No 383
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=39.84 E-value=13 Score=38.41 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.5
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
...|+-+++++|+|||||.++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 356788999999999998664
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.69 E-value=17 Score=40.27 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.++||+|||||+-
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467889999999999995
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.67 E-value=9.9 Score=42.81 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=14.7
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+.+.+.+|||||||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 345777778888888887543
No 386
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=39.65 E-value=9.2 Score=39.57 Aligned_cols=18 Identities=44% Similarity=0.298 Sum_probs=15.1
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.|+.|||||+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 456788999999999994
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=39.64 E-value=17 Score=40.33 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.3
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+++.++||+|||||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSSEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 457888999999999995
No 388
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=39.62 E-value=14 Score=40.74 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=14.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+++.++|++|+|||+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456888899999999986
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=39.60 E-value=7.7 Score=43.73 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
.++.+.++||||||||+-
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999994
No 390
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=39.58 E-value=11 Score=42.78 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=22.9
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEcc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCGP 856 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~P 856 (1269)
|+..|+-+++.+|+|+|||..+++.. ..+.+++|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 45556667777777777776653222 23567777764
No 391
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=39.54 E-value=8.9 Score=38.29 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=14.2
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.+++.||+|+|||+.
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 34578999999999996
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=39.49 E-value=13 Score=37.25 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=17.3
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..++.+++.++.|||||.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 45678999999999999876
No 393
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=39.38 E-value=11 Score=38.76 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=14.4
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.+++.||+|+|||+-
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5688999999999995
No 394
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=39.25 E-value=22 Score=40.87 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=19.3
Q ss_pred cCCceEEeccCCCCchHHH----HHHHhcCCcEEEEcchHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA----LERFLSAESGVYCGPLKM 859 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~----l~~l~~~~~~lil~Ptr~ 859 (1269)
.+.++++.+|||||||... ......+.+++++=|.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 3455666666666665443 111223566666666554
No 395
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=39.04 E-value=11 Score=41.52 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.6
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
+.++++|++|||||++
T Consensus 3 ~~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999996
No 396
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=38.74 E-value=35 Score=43.15 Aligned_cols=64 Identities=19% Similarity=0.084 Sum_probs=51.1
Q ss_pred CEEEEe-cHHhHHHHHHHHHhcCCceEEEeCCCChhhHHHHhcccCCCCCCccchhhhhhhccCccccc
Q psy12699 992 DCIVCF-SKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRG 1059 (1269)
Q Consensus 992 ~~iv~~-s~~~~~~l~~~L~~~~~~~~~i~g~l~~~~r~~~~~~f~~~~~~~~~l~~t~~~~~~~~~~~ 1059 (1269)
.++||+ +++.++.+++.|.+.|.++.++++...+.++......+. ....+++|+..++|.++..
T Consensus 462 pvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr----~G~VtIATnmAgRGtDI~l 526 (922)
T 1nkt_A 462 PVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR----RGGVTVATNMAGRGTDIVL 526 (922)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS----TTCEEEEETTCSTTCCCCT
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC----CCeEEEecchhhcCccccC
Confidence 578887 999999999999999999999999876555544443333 2368899999999999874
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=38.61 E-value=20 Score=40.10 Aligned_cols=14 Identities=29% Similarity=0.366 Sum_probs=11.7
Q ss_pred CeeEEEEecccccc
Q psy12699 908 PYEVAVIDEIQMMR 921 (1269)
Q Consensus 908 ~~~~lViDEah~~~ 921 (1269)
+..+++|||+|.+.
T Consensus 105 ~~~vl~iDEid~l~ 118 (322)
T 1xwi_A 105 KPSIIFIDEIDSLC 118 (322)
T ss_dssp SSEEEEEETTTGGG
T ss_pred CCcEEEeecHHHhc
Confidence 45699999999984
No 398
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=38.59 E-value=46 Score=34.92 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=16.2
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+.+++.|..|||||++
T Consensus 20 ~~~~i~~~G~~g~GKst~ 37 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQ 37 (223)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467889999999999998
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=38.58 E-value=11 Score=40.26 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.2
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.++..+.++||.|||||+-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999993
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=38.54 E-value=15 Score=35.88 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=16.8
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
..+.+++||+|||||+. +.++
T Consensus 23 ~g~~~I~G~NGsGKSti-l~Ai 43 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSL-LDAI 43 (149)
T ss_dssp SEEEEEECCTTSSHHHH-HHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHH
Confidence 45788999999999996 5554
No 401
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=38.42 E-value=13 Score=42.42 Aligned_cols=19 Identities=42% Similarity=0.429 Sum_probs=15.7
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+.++++.+|+|+|||.++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567888999999998877
No 402
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=38.41 E-value=30 Score=40.62 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=19.8
Q ss_pred ccccCCceEEeccCCCCchHHHHH----HHhcCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALE----RFLSAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~----~l~~~~~~lil~ 855 (1269)
|+..|.-+++.|++|+|||..+++ ....+.+++|+.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 455555566666666666655422 122356677776
No 403
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=38.41 E-value=28 Score=40.82 Aligned_cols=36 Identities=28% Similarity=0.141 Sum_probs=22.0
Q ss_pred ccccCCceEEeccCCCCchHHHHHH----Hh-cCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALER----FL-SAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~----l~-~~~~~lil~ 855 (1269)
|+..|.-+++.|++|+|||..++.. .. .+.+++|+.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5566666777777777777655221 12 255677776
No 404
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=38.15 E-value=25 Score=36.14 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=23.5
Q ss_pred EEEECCCCCCcchHH--HHHHHhhhcccccCCceEEeccCCCC
Q psy12699 796 IFHAGPTNSGKTYHA--LERFLSAESGVYCGPLKIHAGPTNSG 836 (1269)
Q Consensus 796 v~~~g~TGsGKT~~a--l~~~l~~~~~l~~g~~vlv~apTGsG 836 (1269)
+.+-|.-|||||||+ +..+|.+ .|.+++....+|..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~-----~g~~v~~treP~~t 40 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK-----RGKKVILKREPGGT 40 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECCCCC
Confidence 567899999999984 3333332 36677766655543
No 405
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.13 E-value=22 Score=39.21 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=27.8
Q ss_pred cCCceEEeccCCCCchHHH--HHHHh---cCCcEEEEc--chHHHHHHHHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA--LERFL---SAESGVYCG--PLKMLATEVFKK 867 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~--l~~l~---~~~~~lil~--Ptr~La~Qi~~~ 867 (1269)
.|+.+.+.+|+|+|||..+ +...+ ++.+++++. |.|..+.+..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~ 155 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT 155 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH
Confidence 3567889999999998766 33332 355666554 555544444333
No 406
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=38.08 E-value=13 Score=38.12 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.2
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|+-+.+.+|+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777889999999998764
No 407
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.94 E-value=12 Score=40.35 Aligned_cols=16 Identities=56% Similarity=0.640 Sum_probs=13.3
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
-+++++|||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999664
No 408
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=37.86 E-value=12 Score=41.05 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=14.3
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++.+++.+|+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567888888888888775
No 409
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.83 E-value=10 Score=39.62 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=16.1
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.++||+|||||+-
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567899999999999995
No 410
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=37.69 E-value=12 Score=37.14 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.6
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.||.|||||+-
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999994
No 411
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.52 E-value=14 Score=36.69 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.8
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
++.+.+.+|.|||||.++
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999876
No 412
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=37.47 E-value=5.3 Score=41.43 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=12.1
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+.++|+.|||||++
T Consensus 2 ~I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEEHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 567888888888886
No 413
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=37.38 E-value=14 Score=40.70 Aligned_cols=18 Identities=39% Similarity=0.359 Sum_probs=14.9
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
+.++++.+|+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567888999999998776
No 414
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.29 E-value=15 Score=38.75 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.5
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.++..+.+.|+.|||||++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCCEEEEEECSTTSCHHHH
T ss_pred CCceEEEEECCCCCCHHHH
Confidence 4567889999999999996
No 415
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=37.27 E-value=14 Score=41.22 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.3
Q ss_pred CCeeEEEEeccccc
Q psy12699 907 IPYEVAVIDEIQMM 920 (1269)
Q Consensus 907 ~~~~~lViDEah~~ 920 (1269)
.+++++|||....+
T Consensus 203 ~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 203 NNIKLVVIDSLTST 216 (322)
T ss_dssp CEEEEEEEECSSHH
T ss_pred cCccEEEEECcHHH
Confidence 67999999999876
No 416
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=37.27 E-value=9.4 Score=42.68 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=16.4
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+.++++.+|+|+|||.++
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999877
No 417
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=37.24 E-value=14 Score=39.09 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=26.0
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
.+.+++++|++|+|||.-+++-..... .-.++.++...-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeeccc
Confidence 467899999999999997665442211 1235666655443
No 418
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=37.11 E-value=17 Score=43.24 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=82.8
Q ss_pred cCCceEEeccCCCCchHHHHHHHh---c---CCcEEEEcchHHHHHHHHHHHhccCC--CceeeecceeeeccCCCCCCC
Q psy12699 823 CGPLKIHAGPTNSGKTYHALERFL---S---AESGVYCGPLKMLATEVFKKSNDRGT--PCDLITGEEKKFIQGEEKPAN 894 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~l~~l~---~---~~~~lil~Ptr~La~Qi~~~l~~~g~--~v~~~~G~~~~~~~~~~~~~~ 894 (1269)
.+++.++..+||+|||++++..+. . ..+++|++| ..|+.|+.++++++.. ++.+..|+... ......+
T Consensus 55 ~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v~~~~g~~~~---~~~~~~~ 130 (500)
T 1z63_A 55 LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRFAVFHEDRSK---IKLEDYD 130 (500)
T ss_dssp TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCEEECSSSTTS---CCGGGSS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceEEEEecCchh---ccccCCc
Confidence 477899999999999988743322 1 468999999 5688999999988643 56666665421 1223679
Q ss_pred EEEEccccccC-----CCCeeEEEEecccccccCCchhHHHHHHhccCcceEEEEeecCC
Q psy12699 895 HVACTVEMTSV-----NIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGA 949 (1269)
Q Consensus 895 Ivv~T~e~~~~-----l~~~~~lViDEah~~~d~~rg~~~~~~ll~l~~~~~~l~~s~~~ 949 (1269)
|+|+|++.+.. ..+++++|+||||++.+.. .....++..+.++. .++-++||
T Consensus 131 ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~~~~-~l~LTaTP 187 (500)
T 1z63_A 131 IILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELKSKY-RIALTGTP 187 (500)
T ss_dssp EEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSCEEE-EEEECSSC
T ss_pred EEEeeHHHHhccchhcCCCcCEEEEeCccccCCHh--HHHHHHHHhhccCc-EEEEecCC
Confidence 99999996543 4579999999999996543 23455666665443 34434444
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=37.09 E-value=14 Score=38.27 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.|++|+|||+-
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467889999999999996
No 420
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=36.94 E-value=13 Score=37.36 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=15.8
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+..+++.+|.|||||.++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999876
No 421
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.86 E-value=12 Score=37.52 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.4
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+-.|+-+.+.+|+|||||..+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 345777899999999998775
No 422
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=36.77 E-value=14 Score=37.39 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=17.2
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..++.+++.++.|||||.++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMA 27 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34678999999999999886
No 423
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=36.72 E-value=17 Score=37.85 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=8.7
Q ss_pred CCCeeEEEEeccccc
Q psy12699 906 NIPYEVAVIDEIQMM 920 (1269)
Q Consensus 906 l~~~~~lViDEah~~ 920 (1269)
..+-+++++||.-.-
T Consensus 120 ~~~p~lllLDEPts~ 134 (208)
T 3b85_A 120 TLNDAFVILDEAQNT 134 (208)
T ss_dssp CBCSEEEEECSGGGC
T ss_pred hcCCCEEEEeCCccc
Confidence 445666666665433
No 424
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=36.71 E-value=20 Score=40.84 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=24.7
Q ss_pred ccccCCceEEeccCCCCchHHHHHHH----hcCCcEEEEc
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHALERF----LSAESGVYCG 855 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~l~~l----~~~~~~lil~ 855 (1269)
|+..|+-+++.+|+|+|||..+++.. ..+.+++|+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 56667778888888888887763322 2356777776
No 425
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.65 E-value=13 Score=36.67 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.1
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
-+++.+|+|||||.++
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999887
No 426
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=36.62 E-value=20 Score=40.45 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCeeEEEEecccccc
Q psy12699 907 IPYEVAVIDEIQMMR 921 (1269)
Q Consensus 907 ~~~~~lViDEah~~~ 921 (1269)
.+++++|||+...+.
T Consensus 218 ~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 218 GIFKLLIIDSIMALF 232 (343)
T ss_dssp SSEEEEEEETSGGGH
T ss_pred CCccEEEEechHHHH
Confidence 689999999999874
No 427
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.61 E-value=20 Score=40.18 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+..++.++||+||||||.
T Consensus 128 ~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 567889999999999995
No 428
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=36.55 E-value=13 Score=39.25 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=25.6
Q ss_pred CceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCC
Q psy12699 792 SRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTN 834 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTG 834 (1269)
++.++++.|++|+|||+-+++-.... ...|..++..+-..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~---~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG---LKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH---HHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEEccC
Confidence 56789999999999999754433222 23455655554333
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=36.47 E-value=15 Score=38.46 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=16.7
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 456888999999999998764
No 430
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=36.43 E-value=13 Score=38.21 Aligned_cols=15 Identities=40% Similarity=0.352 Sum_probs=12.9
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
++.+.|+.|||||+.
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999995
No 431
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=36.39 E-value=26 Score=40.92 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.++++++|++|+|||+.
T Consensus 99 ~p~vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTT 116 (443)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECcCCCCHHHH
Confidence 457889999999999996
No 432
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=35.86 E-value=13 Score=38.28 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.5
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.++|+.|||||+.
T Consensus 21 ~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SSEEEEEEECTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999995
No 433
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=35.80 E-value=15 Score=39.44 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=11.7
Q ss_pred CeeEEEEeccccccc
Q psy12699 908 PYEVAVIDEIQMMRD 922 (1269)
Q Consensus 908 ~~~~lViDEah~~~d 922 (1269)
...++++||+|.+..
T Consensus 104 ~~~il~iDeid~l~~ 118 (257)
T 1lv7_A 104 APCIIFIDEIDAVGR 118 (257)
T ss_dssp CSEEEEETTHHHHTC
T ss_pred CCeeehhhhhhhhcc
Confidence 346899999998843
No 434
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.67 E-value=16 Score=42.16 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=17.4
Q ss_pred ccccCCceEEeccCCCCchHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
++-..+.+++.+|+|+|||+.+
T Consensus 178 gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHH
Confidence 4555678889999999999776
No 435
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=35.61 E-value=16 Score=37.11 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.5
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
|+-+.+.+|+|+|||.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345789999999998764
No 436
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.60 E-value=23 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.5
Q ss_pred eEEEEECCCCCCcchHHHHHH
Q psy12699 794 RIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.++++.|+.|||||+- +..+
T Consensus 5 ~v~~i~G~~GaGKTTl-l~~l 24 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL-LRHI 24 (318)
T ss_dssp EEEEEEESSSSSCHHH-HHHH
T ss_pred cEEEEEecCCCCHHHH-HHHH
Confidence 4778899999999995 4444
No 437
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=35.59 E-value=12 Score=38.40 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=11.6
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
.+.++|+.|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467788888888884
No 438
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=35.49 E-value=13 Score=42.19 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=17.4
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..++.+++.+|+|+|||.++
T Consensus 68 ~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34578999999999999887
No 439
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.41 E-value=17 Score=37.63 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.7
Q ss_pred EEEEECCCCCCcchHHHHHH
Q psy12699 795 IIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~al~~~ 814 (1269)
+.++.|+.|||||+-++..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 56889999999999765543
No 440
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.35 E-value=15 Score=40.57 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=15.9
Q ss_pred CceEEEEECCCCCCcchHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~a 810 (1269)
++.++.++|++|||||+-+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999963
No 441
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=35.27 E-value=21 Score=41.53 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.5
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|..+++.+|||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4567899999999998653
No 442
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=35.20 E-value=13 Score=39.63 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.2
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.+++.+.+.||.|||||+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577889999999999993
No 443
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=35.06 E-value=15 Score=37.45 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.6
Q ss_pred CceEEeccCCCCchHH
Q psy12699 825 PLKIHAGPTNSGKTYH 840 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~ 840 (1269)
|-++++||+|+|||.+
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999855
No 444
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=35.04 E-value=22 Score=40.41 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.++|++||||||.
T Consensus 156 ~g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 467889999999999995
No 445
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=34.96 E-value=34 Score=40.17 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.8
Q ss_pred CCeeEEEEeccccccc
Q psy12699 907 IPYEVAVIDEIQMMRD 922 (1269)
Q Consensus 907 ~~~~~lViDEah~~~d 922 (1269)
.+++++|||+.+.+..
T Consensus 312 ~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 312 SGLGMIVIDYLQLIQG 327 (454)
T ss_dssp TCCCEEEEECGGGSCC
T ss_pred cCCCEEEEccHHHhcc
Confidence 4688999999998853
No 446
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.90 E-value=17 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=16.3
Q ss_pred ccccCCceEEeccCCCCchHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
++-..+.+++.+|+|+|||+.+
T Consensus 211 g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHH
Confidence 4445677888888888888775
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=34.89 E-value=31 Score=38.18 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.6
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.+++.++|++|||||+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp SCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 457889999999999996
No 448
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=34.88 E-value=13 Score=42.56 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=17.4
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|+.+++++|||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 456778999999999998665
No 449
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=34.74 E-value=16 Score=37.80 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=17.1
Q ss_pred cccccCCceEEeccCCCCchHHH
Q psy12699 819 SGVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 819 ~~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+.+..|+-+.+.+|+|||||...
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999998765
No 450
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.74 E-value=26 Score=38.31 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=11.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.|++|+|||+-
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 455666677777777664
No 451
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=34.69 E-value=18 Score=47.30 Aligned_cols=40 Identities=13% Similarity=-0.056 Sum_probs=25.2
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccC
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPT 833 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apT 833 (1269)
++..+++.+||||||..+++.. ......-..+.+++.+||
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr 339 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDR 339 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECG
T ss_pred CCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCc
Confidence 3567899999999999864433 111111123568888874
No 452
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=34.66 E-value=1e+02 Score=34.21 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=28.7
Q ss_pred CCeeEEEEcCccccccc-----c-CceEEEEcCCCCCCcccCCccccccCCHhHHHHHhcccCCC
Q psy12699 1091 NPCKVMVATDAIGMGLN-----L-SIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRF 1149 (1269)
Q Consensus 1091 g~~~VLVaTdv~~~GID-----i-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~y~QR~GRaGR~ 1149 (1269)
....+-+.|...+-|+| . ..+.||.+|.. +-...+.+|.+-|+.|.
T Consensus 169 ~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~Dsd-------------wNp~~d~iQa~~r~~R~ 220 (328)
T 3hgt_A 169 FSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTT-------------VDTSQKDIQYLLQYKRE 220 (328)
T ss_dssp CSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTT-------------CCTTSHHHHHHHCCC--
T ss_pred CCceEEEEECCCCCCcCcccccCCCCCEEEEECCC-------------CCCCChHHHHHHHHhhh
Confidence 45666666776666675 7 99999999971 22223356766666665
No 453
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=34.62 E-value=16 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=18.3
Q ss_pred ccccCCceEEeccCCCCchHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+...++++++.+|+|+|||..+
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHH
T ss_pred CCCCCCeEEEECCCcCCHHHHH
Confidence 3445678999999999999886
No 454
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=34.60 E-value=13 Score=37.60 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=11.1
Q ss_pred EEEECCCCCCcchH
Q psy12699 796 IFHAGPTNSGKTYH 809 (1269)
Q Consensus 796 v~~~g~TGsGKT~~ 809 (1269)
+.+.||.|||||+-
T Consensus 3 i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56788888888884
No 455
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.58 E-value=17 Score=37.32 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=14.4
Q ss_pred CceEEeccCCCCchHHH
Q psy12699 825 PLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~ 841 (1269)
.++++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999775
No 456
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.52 E-value=16 Score=36.66 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.1
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
....+++||+|||||+- +.++
T Consensus 26 ~g~~~i~G~NGsGKStl-l~ai 46 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNI-GDAI 46 (182)
T ss_dssp SSEEEEEECTTSSHHHH-HHHH
T ss_pred CCcEEEECCCCCCHHHH-HHHH
Confidence 34788999999999995 4444
No 457
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=34.40 E-value=16 Score=40.17 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=12.2
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.|+.|||||+.
T Consensus 4 ~~~iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTV 21 (290)
T ss_dssp TSCEEEEESCC---CCTH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345788999999999995
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=34.36 E-value=15 Score=39.77 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.7
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+-+++.||+|+|||+.
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 35678999999999996
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=34.21 E-value=15 Score=37.55 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.2
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
++.+.|+.|||||+.
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567778888888774
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=34.20 E-value=9.2 Score=46.95 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=8.0
Q ss_pred ceEEEEECCCCCCcch
Q psy12699 793 RRIIFHAGPTNSGKTY 808 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~ 808 (1269)
++.+.++||+|||||+
T Consensus 381 G~~~~ivG~sGsGKST 396 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTT 396 (598)
T ss_dssp TCEEEEECCTTSSTTH
T ss_pred CCEEEEECCCCCcHHH
Confidence 3444555555555555
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.11 E-value=22 Score=39.68 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=14.2
Q ss_pred CceEEeccCCCCchHHH
Q psy12699 825 PLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 825 ~~vlv~apTGsGKTl~~ 841 (1269)
+.+++++|||||||.++
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999664
No 462
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=34.05 E-value=14 Score=38.58 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.4
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.+.||+|+|||+-
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467889999999999985
No 463
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=33.99 E-value=16 Score=37.40 Aligned_cols=19 Identities=32% Similarity=0.198 Sum_probs=16.4
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|+.+.+.+|.|||||.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678899999999998775
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.91 E-value=13 Score=40.20 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
.+.+++.+|+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 567899999999999776
No 465
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=33.77 E-value=14 Score=40.38 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=16.0
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.||.||||||-
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999994
No 466
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.74 E-value=13 Score=40.01 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.++++|+.|||||+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TTCCEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467889999999999995
No 467
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=33.72 E-value=15 Score=40.26 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.4
Q ss_pred ceEEEEECCCCCCcchHHHHHH
Q psy12699 793 RRIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~ 814 (1269)
.+-+++.||+|+|||+. ...+
T Consensus 54 ~~~vll~Gp~GtGKT~l-a~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL-ARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHH-HHHH
T ss_pred CCeEEEECcCCCCHHHH-HHHH
Confidence 35678999999999996 3344
No 468
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=33.66 E-value=28 Score=39.92 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=29.5
Q ss_pred ceEEEEECCCCCCcchHHHHHHHhhhcccccCCceEEeccCCCCch
Q psy12699 793 RRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKT 838 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~al~~~l~~~~~l~~g~~vlv~apTGsGKT 838 (1269)
+.-++++|+||||||+. +..++... ...|..+++.-|.|+=+.
T Consensus 35 ~~~~~i~G~~G~GKs~~-~~~~~~~~--~~~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFT-AKMLLLRE--YMQGSRVIIIDPEREYKE 77 (392)
T ss_dssp CCCEEEECCTTSSHHHH-HHHHHHHH--HTTTCCEEEEESSCCSHH
T ss_pred cCceEEEcCCCCCHHHH-HHHHHHHH--HHCCCEEEEEeCCcCHHH
Confidence 34568999999999996 44443332 345777888888776543
No 469
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=33.62 E-value=15 Score=38.94 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=12.5
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
...+.+.||+|||||+.
T Consensus 9 ~~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34677788888888884
No 470
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=33.50 E-value=15 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=14.3
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.+++.||+|+|||+.
T Consensus 49 ~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CceEEEECCCCcCHHHH
Confidence 45678999999999995
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.45 E-value=13 Score=38.57 Aligned_cols=18 Identities=33% Similarity=0.829 Sum_probs=14.7
Q ss_pred ceEEEEECCCCCCcchHH
Q psy12699 793 RRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~a 810 (1269)
++-+++.||+|+|||+.|
T Consensus 58 kn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp CSEEEEESCGGGCHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 445789999999999863
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=33.26 E-value=15 Score=38.93 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.4
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.+++++.+.||.|||||+-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3677899999999999993
No 473
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=33.18 E-value=16 Score=39.33 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=15.2
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
.+.+++.|..|||||++
T Consensus 24 ~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTF 40 (263)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 46789999999999997
No 474
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=33.18 E-value=13 Score=44.42 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.9
Q ss_pred cccCCceEEeccCCCCchHHH
Q psy12699 821 VYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 821 l~~g~~vlv~apTGsGKTl~~ 841 (1269)
+..|.++++.+|+|+|||..+
T Consensus 38 l~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHH
T ss_pred HhcCCeeEeecCchHHHHHHH
Confidence 467899999999999999887
No 475
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.02 E-value=17 Score=37.76 Aligned_cols=18 Identities=50% Similarity=0.901 Sum_probs=15.3
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.||.|||||+-
T Consensus 21 ~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HCSEEEEECCTTSSTTHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456788999999999994
No 476
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=32.94 E-value=17 Score=39.04 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.3
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++..+.+.||.|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999995
No 477
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.85 E-value=15 Score=40.84 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=16.4
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.++.++.++|+.||||||-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp CCCEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCchHHHH
Confidence 3567889999999999995
No 478
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=32.84 E-value=15 Score=36.59 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.2
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.|+.+.+.+|.|||||..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999998775
No 479
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=32.75 E-value=15 Score=39.39 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=13.3
Q ss_pred EEEEECCCCCCcchH
Q psy12699 795 IIFHAGPTNSGKTYH 809 (1269)
Q Consensus 795 ~v~~~g~TGsGKT~~ 809 (1269)
-+++.||+|+|||+.
T Consensus 47 ~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLL 61 (257)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 378999999999995
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=32.62 E-value=16 Score=39.10 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.4
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.+++.+.+.||.|||||+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999993
No 481
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=32.60 E-value=18 Score=38.02 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=16.2
Q ss_pred CceEEEEECCCCCCcchHH
Q psy12699 792 SRRIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~a 810 (1269)
++.++.+.||+|+|||+-+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 5678899999999999963
No 482
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=32.52 E-value=14 Score=38.94 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++++.+.||.|||||+-
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567889999999999993
No 483
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.50 E-value=18 Score=42.14 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=16.9
Q ss_pred ccccCCceEEeccCCCCchHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
|+-..+.+++.+|+|+|||+.+
T Consensus 202 g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHH
Confidence 4555677888888888888775
No 484
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=38.71 E-value=9.4 Score=38.17 Aligned_cols=67 Identities=12% Similarity=-0.066 Sum_probs=47.3
Q ss_pred CCcEEEEcchHHHHHHHHHHHhccCCCceeeecceeeeccC------CCCCCCEEEEccc--cccCCCCeeEEEE
Q psy12699 848 AESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQG------EEKPANHVACTVE--MTSVNIPYEVAVI 914 (1269)
Q Consensus 848 ~~~~lil~Ptr~La~Qi~~~l~~~g~~v~~~~G~~~~~~~~------~~~~~~Ivv~T~e--~~~~l~~~~~lVi 914 (1269)
+.+++|.++++.-+.++++.+++.|..+..++|+....+.. .+...+|+|+|.- .--.+..++++|.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~ 104 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN 104 (170)
Confidence 46789999999999999999998888888888875443322 1235679999932 1112455666664
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=32.37 E-value=17 Score=38.88 Aligned_cols=17 Identities=35% Similarity=0.264 Sum_probs=14.4
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
..++.+.|+.|||||+.
T Consensus 22 ~~iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSV 38 (252)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 35788999999999996
No 486
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=32.28 E-value=15 Score=40.81 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=17.0
Q ss_pred eEEeccCCCCchHHH--HHHHhcCCcEE
Q psy12699 827 KIHAGPTNSGKTYHA--LERFLSAESGV 852 (1269)
Q Consensus 827 vlv~apTGsGKTl~~--l~~l~~~~~~l 852 (1269)
+.+.+|+|||||... +..+. .++++
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred EEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 368999999998766 44444 44443
No 487
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=32.21 E-value=18 Score=41.27 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.4
Q ss_pred CCceEEeccCCCCchHHH
Q psy12699 824 GPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~ 841 (1269)
..++++.+|+|+|||.++
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 567999999999999876
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=32.17 E-value=25 Score=39.54 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=13.7
Q ss_pred ceEEeccCCCCchHHH
Q psy12699 826 LKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 826 ~vlv~apTGsGKTl~~ 841 (1269)
-+++++|||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999765
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=32.11 E-value=16 Score=39.97 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.8
Q ss_pred ceEEEEECCCCCCcchH
Q psy12699 793 RRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 793 r~~v~~~g~TGsGKT~~ 809 (1269)
...+.++|+.|||||+.
T Consensus 75 ~~iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSV 91 (281)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45788999999999996
No 490
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=32.08 E-value=15 Score=40.54 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=0.0
Q ss_pred eEEEEECCCCCCcchHH
Q psy12699 794 RIIFHAGPTNSGKTYHA 810 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~a 810 (1269)
+.+++.||+|+|||+.|
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
No 491
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=31.99 E-value=16 Score=39.61 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.8
Q ss_pred eEEEEECCCCCCcchHHHHHH
Q psy12699 794 RIIFHAGPTNSGKTYHALERF 814 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~al~~~ 814 (1269)
+-+++.||+|+|||+. ..++
T Consensus 52 ~~~ll~G~~GtGKT~l-a~~l 71 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLL-AKAV 71 (285)
T ss_dssp SEEEEESSSSSSHHHH-HHHH
T ss_pred CeEEEECCCCCcHHHH-HHHH
Confidence 4578999999999996 3444
No 492
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=31.89 E-value=16 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.9
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
++.++.+.||.|||||+-
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577889999999999993
No 493
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=31.84 E-value=15 Score=41.70 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.1
Q ss_pred ccCCceEEeccCCCCchHHH
Q psy12699 822 YCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 822 ~~g~~vlv~apTGsGKTl~~ 841 (1269)
..+..+++.+|||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567999999999998654
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=31.84 E-value=24 Score=41.05 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.7
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+.++++++|+.|||||+.
T Consensus 257 ~~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp SCCEEEEESCTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 457889999999999996
No 495
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=31.75 E-value=16 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.2
Q ss_pred cCceEEEEECCCCCCcchH
Q psy12699 791 ISRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 791 ~~r~~v~~~g~TGsGKT~~ 809 (1269)
.++.++.+.||.|||||+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3577889999999999993
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=31.69 E-value=15 Score=38.11 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=10.4
Q ss_pred eEEEEECCCCCCcchH
Q psy12699 794 RIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 794 ~~v~~~g~TGsGKT~~ 809 (1269)
..+.++|+.|||||+.
T Consensus 4 ~~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 4 INIALDGPAAAGKSTI 19 (219)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3456677777777774
No 497
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=31.57 E-value=16 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=15.9
Q ss_pred cCCceEEeccCCCCchHHH
Q psy12699 823 CGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 823 ~g~~vlv~apTGsGKTl~~ 841 (1269)
.+..+++.++.|||||.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999876
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.53 E-value=19 Score=42.02 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=17.6
Q ss_pred ccccCCceEEeccCCCCchHHH
Q psy12699 820 GVYCGPLKIHAGPTNSGKTYHA 841 (1269)
Q Consensus 820 ~l~~g~~vlv~apTGsGKTl~~ 841 (1269)
++-..+.+++.+|+|+|||+.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHH
Confidence 4455678999999999999876
No 499
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=31.51 E-value=16 Score=39.16 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CceEEEEECCCCCCcchH
Q psy12699 792 SRRIIFHAGPTNSGKTYH 809 (1269)
Q Consensus 792 ~r~~v~~~g~TGsGKT~~ 809 (1269)
+++.+.+.||.|||||+-
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999993
No 500
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=31.47 E-value=30 Score=38.32 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=21.1
Q ss_pred CCceEEeccCCCCchHHH--HHHHhc--CCcEEEEc
Q psy12699 824 GPLKIHAGPTNSGKTYHA--LERFLS--AESGVYCG 855 (1269)
Q Consensus 824 g~~vlv~apTGsGKTl~~--l~~l~~--~~~~lil~ 855 (1269)
|+-+.+.+|+|+|||... +..++. ++++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 455778999999998665 443333 45555544
Done!