RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12699
(1269 letters)
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 62.6 bits (153), Expect = 4e-12
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSL 1118
++ G +VA ++G L + KFN+ KV+VATD GL+L + VI Y L
Sbjct: 7 LKELGIKVARLHGGLSQEEREEILDKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDL 64
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150
S ++ +Q GRAGR
Sbjct: 65 --------------PWSPASYIQRIGRAGRAG 82
Score = 46.4 bits (111), Expect = 2e-06
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 1004 TVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIESR 1063
++ ++ G +VA ++G L + KFN+ KV+VATD GL+ G+
Sbjct: 2 ELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKI--KVLVATDVAERGLDLPGV--- 56
Query: 1064 GTEVAVIYGSLPPTTKLAQAS 1084
++ +IY Q
Sbjct: 57 --DLVIIYDLPWSPASYIQRI 75
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases, whereas
this domain family is found in a wide variety of
helicases and helicase related proteins. It may be that
this is not an autonomously folding unit, but an integral
part of the helicase.
Length = 78
Score = 61.8 bits (151), Expect = 9e-12
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNL-SIRRVIFYSLI 1119
G +VA ++G L + F + KV+VATD G G++L + VI Y L
Sbjct: 4 RKPGIKVARLHGGLSQEEREEILEDFRN--GKSKVLVATDVAGRGIDLPDVNLVINYDLP 61
Query: 1120 KPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150
+ ++ +Q GRAGR
Sbjct: 62 W--------------NPASYIQRIGRAGRAG 78
Score = 44.4 bits (106), Expect = 1e-05
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1010 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGI 1060
G +VA ++G L + F + KV+VATD G G++ +
Sbjct: 4 RKPGIKVARLHGGLSQEEREEILEDFRN--GKSKVLVATDVAGRGIDLPDV 52
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 60.3 bits (147), Expect = 1e-10
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS-IRRVIFYSL 1118
+ G +VA ++G + F + V+VATD I G++L + VI Y L
Sbjct: 48 LRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIARGIDLPNVSVVINYDL 105
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150
S S+ LQ GRAGR
Sbjct: 106 --------------PWSPSSYLQRIGRAGRAG 123
Score = 53.0 bits (128), Expect = 4e-08
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I C SK + ++ + G +VA ++G + F + V+VATD I
Sbjct: 33 IFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFR--EGEIVVLVATDVIAR 90
Query: 1054 GLNF 1057
G++
Sbjct: 91 GIDL 94
>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport
and metabolism / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 309
Score = 63.4 bits (154), Expect = 2e-10
Identities = 58/299 (19%), Positives = 133/299 (44%), Gaps = 21/299 (7%)
Query: 65 ISTALFYALCSLFITIVNKSVLTSYVFP-SFKIVALGQLLTTVVVLYVGKKLRFIQFPNY 123
++ +L Y S+ +T+ NK VL++ F +F ++A+ Q L VV L + L+F++ +
Sbjct: 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAV-QSLVCVVGLLI---LKFLRLVEF 63
Query: 124 HRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRS 183
+ P+ F+ + + + L++P++T+ + +I++ E + R
Sbjct: 64 RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE---VLFFGGRV 120
Query: 184 VKITV---GMMIGGAVIAALNDLGYNFQ-------GYVFVLLNNFLTAVNGVYTKKKLDP 233
+ + +M+ +V+A D + GY+++ N +A + +K++
Sbjct: 121 TSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIK- 179
Query: 234 KKDMGKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILN 293
+ + MFY+++ LP+ + F +L +D++ L FI C I +
Sbjct: 180 LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGI-S 238
Query: 294 YSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352
Y C + S+ T +++G L + + G+ + D + + I + + +Y +
Sbjct: 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGL-VFFDAPVNFLSIFSILLGFLSGAIYAV 296
Score = 35.6 bits (82), Expect = 0.14
Identities = 25/109 (22%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 593 ISTALFYALCSLFITIVNKSVLTSYVFP-SFKIVALGQLLTTVVVLYVGKKLRFIQFPNY 651
++ +L Y S+ +T+ NK VL++ F +F ++A+ Q L VV L + L+F++ +
Sbjct: 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAV-QSLVCVVGLLI---LKFLRLVEF 63
Query: 652 HRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFTMLRRFSILMTMIAE 700
+ P+ F+ + + + L++P++T+ + +I++ E
Sbjct: 64 RLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family. This family
includes transporters with a specificity for triose
phosphate.
Length = 149
Score = 56.0 bits (136), Expect = 5e-09
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 209 GYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYG---LMFYSSVFMLPVTVIFIYLSDDYA 265
G++ L + L A+ + ++K L KK K L++Y S V + + S+ +
Sbjct: 1 GFILALAASALFALRLILSQKLLK-KKKGTKLNVLELLYYLSPVAFIVLLPGLLFSEGFK 59
Query: 266 --KVLEYEYLWDMWFQIQF--ILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTY 321
K + + + +LS + F+ N S S LT+++ G +K +++
Sbjct: 60 LGKFILKFFGDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIV 119
Query: 322 LGMFIGGDYVYSVNNFIGINISIIGSILY 350
L + I GD V + N +G+ I+I+G +LY
Sbjct: 120 LSVIIFGDPV-TFLNILGLAIAILGVVLY 147
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication,
recombination, and repair / Transcription / Translation,
ribosomal structure and biogenesis].
Length = 513
Score = 59.4 bits (144), Expect = 7e-09
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 19/158 (12%)
Query: 907 IPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHVCGEAGAVDLVKAIMMTTNEDVEV 966
+P + + M D R A + + + E L + + +EV
Sbjct: 202 LPPDRQTLLFSATMPDDIRELARR-----YLNDPVEI--EVSVEKLERTLKKIKQFYLEV 254
Query: 967 YKY--KRLTELQIEDSAVGSLDNIQPGDCIV-CFSKNDVYTVSRGIESRGTEVAVIYGSL 1023
K L++ L + G IV +K V ++ + RG +VA ++G L
Sbjct: 255 ESEEEKLELLLKL-------LKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307
Query: 1024 PPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIE 1061
P + KF D +V+VATD GL+ +
Sbjct: 308 PQEERDRALEKFK--DGELRVLVATDVAARGLDIPDVS 343
Score = 47.1 bits (112), Expect = 5e-05
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Query: 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS-IRRVIFYSLI 1119
RG +VA ++G LP + KF D +V+VATD GL++ + VI Y L
Sbjct: 294 RKRGFKVAALHGDLPQEERDRALEKFKD--GELRVLVATDVAARGLDIPDVSHVINYDL- 350
Query: 1120 KPSLNEKGEREIDLISVSAALQIAGRAGRFN 1150
+ + + GR GR
Sbjct: 351 --------PLDPE-----DYVHRIGRTGRAG 368
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator.
The 6-8 TMS Triose-phosphate Transporter (TPT) Family
(TC 2.A.7.9)Functionally characterized members of the
TPT family are derived from the inner envelope membranes
of chloroplasts and nongreen plastids of plants.
However,homologues are also present in yeast.
Saccharomyces cerevisiae has three functionally
uncharacterized TPT paralogues encoded within its
genome. Under normal physiologicalconditions,
chloroplast TPTs mediate a strict antiport of
substrates, frequently exchanging an organic three
carbon compound phosphate ester for inorganic phosphate
(Pi).Normally, a triose-phosphate, 3-phosphoglycerate,
or another phosphorylated C3 compound made in the
chloroplast during photosynthesis, exits the organelle
into thecytoplasm of the plant cell in exchange for Pi.
However, experiments with reconstituted translocator in
artificial membranes indicate that transport can also
occur by achannel-like uniport mechanism with up to
10-fold higher transport rates. Channel opening may be
induced by a membrane potential of large magnitude
and/or by high substrateconcentrations. Nongreen plastid
and chloroplast carriers, such as those from maize
endosperm and root membranes, mediate transport of C3
compounds phosphorylated atcarbon atom 2, particularly
phosphenolpyruvate, in exchange for Pi. These are the
phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P
has also been shown to be asubstrate of some plastid
translocators (GPT). The three types of proteins (TPT,
PPT and GPT) are divergent in sequence as well as
substrate specificity, but their substratespecificities
overlap [Hypothetical proteins, Conserved].
Length = 302
Score = 50.9 bits (122), Expect = 2e-06
Identities = 55/310 (17%), Positives = 114/310 (36%), Gaps = 45/310 (14%)
Query: 68 ALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNI 127
L+Y L F I NK +L + +P FK L L + + + +
Sbjct: 8 GLWYFLNVYF-NIYNKKLLNVFPYPYFK--TLISLAVGSLYCLLSWSSGLPKRLKISSAL 64
Query: 128 FFELMPLPFIY-LGNMV---------FGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLH 177
L+P+ ++ +G++ T + P F+++ + L
Sbjct: 65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVV----------LSAFFLG 114
Query: 178 IVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDM 237
++ +++ ++GG +A+ +L +N+ G++ +++N +++KK + K +
Sbjct: 115 QEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMT-IKSL 173
Query: 238 GKYGLMFYSSVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQ-------------FIL 284
K L Y S+ + LS +L + Q
Sbjct: 174 DKTNLYAYISI------MSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAA 227
Query: 285 SCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISI 344
F + ML + S LT ++ C+K +++ + + G + F G I+I
Sbjct: 228 MGFFHFYQQVAFMLLGRV-SPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVF-GTGIAI 285
Query: 345 IGSILYTIVT 354
G LY+ V
Sbjct: 286 AGVFLYSRVK 295
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate
translocator; Provisional.
Length = 350
Score = 49.0 bits (117), Expect = 1e-05
Identities = 41/211 (19%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 155 PMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVL 214
P+FT L SIL L N +++ ++GG +A++ +L + + + +
Sbjct: 151 PVFTAL--LSIL--------FLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAM 200
Query: 215 LNNFLTAVNGVYTKKKLDPKKDMGK-------YGLM-FYSSVFMLPVTVIFIYLSDDYAK 266
L+N +++ ++ KK + K ++G+ Y L+ +S+ LP+ V+F
Sbjct: 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPL-VLFFEGKKWVPV 259
Query: 267 VLEYEYLWDMW-FQI---QFILSCCMGFILNYSIMLCTQYNSALTTTIIGCLKNILLTYL 322
Y + I + S ++ N C + +T + LK +++
Sbjct: 260 WTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVS 319
Query: 323 GMFIGGDYVYSVNNFIGINISIIGSILYTIV 353
+ I V ++ ++G+ ++I+G++LY++
Sbjct: 320 SIIIFQTQV-TLLGYLGMAVAILGALLYSLF 349
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 42.8 bits (101), Expect = 0.002
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
KV+ AT+ +G+N+ R V+F SL K G L Q++GRAGR
Sbjct: 472 KVVFATETFAIGINMPARTVVFTSLSK----FDGNGHRWLSP-GEYTQMSGRAGR 521
Score = 33.9 bits (78), Expect = 0.66
Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 40/179 (22%)
Query: 771 DLKKISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFLSAESGVYCGPLKIHA 830
+ D+ AE + +R F + LER ES + C P
Sbjct: 92 AVPDDYDMVPDAESPFDLAPPAREYPFEL-DPFQQEAIAILER---GESVLVCAP----- 142
Query: 831 GPTNSGKTY---HALERFLSAESGV-YCGPLKMLA----TEVFKKSNDRGTPCDLITGEE 882
T+SGKT +A+ L V Y P+K L+ ++ K D L+TG+
Sbjct: 143 --TSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDV 200
Query: 883 KKFIQGEEKPANHVACTVEMTS---VNIPY-------EVA--VIDEIQMMRDITRGWAW 929
N A + MT+ N+ Y ++ V DE+ + D RG W
Sbjct: 201 S---------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVW 250
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 41.6 bits (98), Expect = 0.003
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
KV+V+T + G+NL R VI + + G +I ++ V LQ+AGRAGR
Sbjct: 342 KVLVSTPTLAAGVNLPARTVIIKDTRRYD-PKGGIVDIPVLDV---LQMAGRAGR 392
Score = 31.6 bits (72), Expect = 3.1
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 1165 EKGEREIDLISVSAALQIAGRAGR--FNTHFEKGFVTTFKPDDLPILKNLLAQS-PEPIT 1221
+ G +I ++ V LQ+AGRAGR ++ + E + D+L L L QS PEPI
Sbjct: 372 KGGIVDIPVLDV---LQMAGRAGRPGYDDYGE-AIILATSHDELEYLAELYIQSEPEPIE 427
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication,
recombination, and repair].
Length = 590
Score = 41.5 bits (98), Expect = 0.003
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS-IRRVIFYSL 1118
+ G + L + F + + KVMVAT+A GMG++ +R VI Y L
Sbjct: 250 LRKNGISAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGMGIDKPDVRFVIHYDL 307
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
S+ + Q GRAGR
Sbjct: 308 PG--------------SIESYYQETGRAGR 323
Score = 37.3 bits (87), Expect = 0.063
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I C ++ V ++ + G + L + F + + KVMVAT+A GM
Sbjct: 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGM 292
Query: 1054 GLN 1056
G++
Sbjct: 293 GID 295
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 39.8 bits (93), Expect = 0.004
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 28/156 (17%)
Query: 809 HALERFLSAESGVYCGPLKIHAGPTNSGKT----YHALERFLSAESG--VYCGPLKMLAT 862
A+E LS V I A PT SGKT ALE + G + P + LA
Sbjct: 15 EAIEALLSGLRDV------ILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAE 68
Query: 863 EVFKK-----SNDRGTPCDLITGEEKKFIQGE--EKPANHVACTVEM--------TSVNI 907
+ ++ + L G+ K+ + + + T
Sbjct: 69 QWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLS 128
Query: 908 PYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHV 943
++ ++DE + D G + LL L+ K + +
Sbjct: 129 NVDLVILDEAHRLLDGGFGDQLEK-LLKLLPKNVQL 163
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent
DNA helicase RecQ of E. coli is about 600 residues long.
This model represents bacterial proteins with a high
degree of similarity in domain architecture and in
primary sequence to E. coli RecQ. The model excludes
eukaryotic and archaeal proteins with RecQ-like regions,
as well as more distantly related bacterial helicases
related to RecQ [DNA metabolism, DNA replication,
recombination, and repair].
Length = 591
Score = 40.4 bits (95), Expect = 0.006
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLS-IRRVIFYSL 1118
+ES+G + L + F D KVMVAT+A GMG++ +R VI Y +
Sbjct: 244 LESQGISALAYHAGLSNKVRAENQEDFLYDDV--KVMVATNAFGMGIDKPNVRFVIHYDM 301
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
++ + Q AGRAGR
Sbjct: 302 PG--------------NLESYYQEAGRAGR 317
Score = 34.7 bits (80), Expect = 0.35
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 994 IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGM 1053
I S+ V ++ +ES+G + L + F D KVMVAT+A GM
Sbjct: 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV--KVMVATNAFGM 286
Query: 1054 GLN 1056
G++
Sbjct: 287 GID 289
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 38.0 bits (89), Expect = 0.033
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 1090 DNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR- 1148
D KV+ +T + GLNL RRVI + G + I ++ Q+AGRAGR
Sbjct: 327 DRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYH---QMAGRAGRP 382
Query: 1149 -FNTHFEK--LAGSHPALNEKGEREID 1172
+ + E LA S+ L+E ER I
Sbjct: 383 GLDPYGEAVLLAKSYDELDELFERYIW 409
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 35.8 bits (83), Expect = 0.041
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 19/116 (16%)
Query: 830 AGPTNSGKT----YHALERFLSAESG--VYCGPLKMLAT---EVFKKSNDRGTPCDLITG 880
A PT SGKT LE S + G + P + LA E K+ G + G
Sbjct: 6 AAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIG 65
Query: 881 EEKKFIQGEEKPANH--VACTVEM--------TSVNIPYEVAVIDEIQMMRDITRG 926
Q + V T ++ ++DE + + G
Sbjct: 66 GTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121
>gnl|CDD|219846 pfam08449, UAA, UAA transporter family. This family includes
transporters with a specificity for
UDP-N-acetylglucosamine.
Length = 303
Score = 37.2 bits (87), Expect = 0.043
Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 34/236 (14%)
Query: 100 GQLLTTV---VVLYVGKKLRFIQFPNYHRNIFFE-LMPLPFIYLGNMVFGLGGTKELSLP 155
G LLT + VG + R I + + + + + V K +S P
Sbjct: 32 GNLLTFAQFLFISLVGLLYLLLFKKLKPRKIPLKTYVLIVATFFLSSVLNNEALKYISYP 91
Query: 156 MFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND----------LGY 205
+ + ++ MI + + ++ ++ G +I L
Sbjct: 92 THVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLITLGVIIFTLASAKDSKNSKLTTFS 151
Query: 206 NFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYG-----LMFYSSVFMLPVTVIFIYL 260
+ G + + A+ G +K KYG +MFYS + LP + L
Sbjct: 152 DNVGIALLFGALLMDALTGNTQEKL------YKKYGKHSKEMMFYSHLLSLP--FFLLGL 203
Query: 261 SDDYAKVL---EYEYLW--DMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTII 311
D +L E L + F + + S + L +++ ALT T++
Sbjct: 204 LDIRTGLLFSAESFCLRHPSVLFYL-LLNSLTQYVGQFFVFYLISEF-GALTVTLV 257
>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter. The 10-12 TMS
Nucleotide Sugar Transporters (TC
2.A.7.10)Nucleotide-sugar transporters (NSTs) are found
in the Golgi apparatus and the endoplasmic reticulum of
eukaryotic cells. Members of the family have been
sequenced from yeast, protozoans and animals. Animals
such as C. elegans possess many of these transporters.
Humans have at least two closely related isoforms of the
UDP-galactose:UMP exchange transporter.NSTs generally
appear to function by antiport mechanisms, exchanging a
nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid
is exchanged for CMP; GDP-mannose is preferentially
exchanged for GMP, and UDP-galactose and
UDP-N-acetylglucosamine are exchanged for UMP (or
possibly UDP). Other nucleotide sugars (e.g.,
GDP-fucose, UDP-xylose, UDP-glucose,
UDP-N-acetylgalactosamine, etc.) may also be transported
in exchange for various nucleotides, but their
transporters have not been molecularly characterized.
Each compound appears to be translocated by its own
transport protein. Transport allows the compound,
synthesized in the cytoplasm, to be exported to the
lumen of the Golgi apparatus or the endoplasmic
reticulum where it is used for the synthesis of
glycoproteins and glycolipids.
Length = 222
Score = 36.2 bits (84), Expect = 0.060
Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 48/234 (20%)
Query: 152 LSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAALND--------- 202
LS+P+ + ++ ++++ + + ++ +M G+++A+L D
Sbjct: 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLL 61
Query: 203 -LGYNF------------QGYVFVLLNNFLTAV-----NGVYTKKKLDPKKDMGKYGLMF 244
LG G V L+ L+A+ GVY +K + MF
Sbjct: 62 KLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEK------ILKDGDTMF 115
Query: 245 YSSV-----FMLPVTVIFIYLSDDYA---KVLEYEYLWDMWFQIQFILSCCMGFILNYSI 296
+S F L T + SD Y +W +L+ G I
Sbjct: 116 WSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG--LLNVGGGLC----I 169
Query: 297 MLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILY 350
+Y T + + L +I+L+ L D S ++G + + + LY
Sbjct: 170 GGVVRYADNTTKSFVTAL-SIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family. All
proteins in this family for which functions are known are
3'-5' DNA-DNA helicases. These proteins are used for
recombination, recombinational repair, and possibly
maintenance of chromosome stability. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 470
Score = 37.1 bits (86), Expect = 0.069
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 1091 NPCKVMVATDAIGMGLNLS-IRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
+ +V+VAT A GMG+N +R VI YSL K S+ + Q +GRAGR
Sbjct: 275 DEIQVVVATVAFGMGINKPDVRFVIHYSLPK--------------SMESYYQESGRAGR 319
Score = 34.7 bits (80), Expect = 0.34
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 989 QPGDC--IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMV 1046
G I C S+ V+ +++ G + L + + KF + +V+V
Sbjct: 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR--DEIQVVV 281
Query: 1047 ATDAIGMGLN 1056
AT A GMG+N
Sbjct: 282 ATVAFGMGIN 291
>gnl|CDD|225532 COG2985, COG2985, Predicted permease [General function prediction
only].
Length = 544
Score = 35.5 bits (82), Expect = 0.20
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 94 FKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFELMPLPFIY-----LGNMVFGLGG 148
+ LG VL+VG L F + FEL + F+Y G F
Sbjct: 26 IRGFGLGIGGVLFGVLFVGLFLGQYGFTINTDMLHFELGLILFVYTIGLEAGPGFFSSFR 85
Query: 149 TKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIG--------GAVIAAL 200
L+L F +L I++ + +VLH + + + GM G GA L
Sbjct: 86 KSGLNLNAFALL----IVIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDIL 141
Query: 201 NDLG 204
+LG
Sbjct: 142 RELG 145
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 34.7 bits (79), Expect = 0.35
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 1061 ESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRR--VIFYSL 1118
++ G + + GS P + +FN + +++ A G+GLNL+ ++F
Sbjct: 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPW 791
Query: 1119 IKPSLNEKGEREIDLISVSAALQIAGRAGR-------FNTHFEKLAGSHPALNEKGEREI 1171
P++ + I +++ R +K ++ +GE+E+
Sbjct: 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKEL 851
Query: 1172 DLISVSAALQIAGR 1185
+S+ L +
Sbjct: 852 SKLSIEDLLDLFSL 865
>gnl|CDD|218789 pfam05875, Ceramidase, Ceramidase. This family consists of several
ceramidases. Ceramidases are enzymes involved in
regulating cellular levels of ceramides, sphingoid
bases, and their phosphates, EC:3.5.1.23.
Length = 264
Score = 33.8 bits (78), Expect = 0.52
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 136 FIYLGNMVFGLG-----GTKELSLPMFTMLRRFSILMTMIAEYYVL-----HIVPNRSVK 185
IYLG ++ GLG T L +L ++ Y
Sbjct: 58 LIYLGLILVGLGSWLFHMT--LKYHG-QLLDELPMIYATCIPLYSWFPRRKFFFKRDRTV 114
Query: 186 ITVGMMIGGAVIAALNDLGYN--FQGYVFVLLNNFLTAVNGVYTKKKL-DPKKDMGKYGL 242
+ + + + A++ L + N F LL + + K+ + D + L
Sbjct: 115 LAILLFLLAAIVTVLYFILKNPVIHQVAFGLLTIPVVLRSIYLMKRYVRDSVARKNLWRL 174
Query: 243 MFYSSVFMLPVTVIFIYLSD 262
M L F + D
Sbjct: 175 MKLGVALFL--LGFFCWNLD 192
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 32.6 bits (75), Expect = 0.58
Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 24/139 (17%)
Query: 830 AGPTNSGKT--YH--ALERFLSAESG---VYCGPLKMLATEVF----KKSNDRGTPCDLI 878
PT SGKT + L+ L + G + P + LA +++ K G L+
Sbjct: 20 QAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALL 79
Query: 879 TG---EEKKFIQGEEKPANHVACT-------VEMTSVNIPYEVA--VIDEIQMMRDITRG 926
TG +++ + ++ A+ + T + + + + V+DE + D+ G
Sbjct: 80 TGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKLLKNLKLLVLDEAHRLLDMGFG 139
Query: 927 WAWTRALLGLMAKEIHVCG 945
+L + + +
Sbjct: 140 DDL-EEILSRLPPDRQILL 157
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General
function prediction only].
Length = 830
Score = 33.2 bits (76), Expect = 0.99
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 1095 VMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRFNTH 1152
+V T A+ G++ +VIF SL I+ +SV Q+ GRAGR + H
Sbjct: 493 AVVTTAALAAGVDFPASQVIFESLAM---------GIEWLSVREFQQMLGRAGRPDYH 541
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 409
Score = 32.1 bits (74), Expect = 2.0
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 28/186 (15%)
Query: 82 NKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNIFFEL--MPLPFIYL 139
++ L +F+I + +L +++L K L + F + + F L + LP L
Sbjct: 68 DEEKLARVWSTAFRITLILSILGGLLLLLFSKPLSSLLFGDIDYSWVFILLGLALPLFAL 127
Query: 140 GNMVF----GLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGA 195
N++ GL K +L ++ L+ + Y + GA
Sbjct: 128 NNLLLAILNGLKEIKRYAL--INIISSLIGLLVSVLLVYFYGLK--------------GA 171
Query: 196 VIA-ALNDLGYNFQGYVFVLLNNFLTAVNGVYTKKKLD--PKKDMGKYGLMFYSSVFMLP 252
++A LN ++ + Y +LD K + K+ LM S LP
Sbjct: 172 LLALVLNQSLIFLVTLIYSRKQPW---FKLKYLWGRLDKDIIKKLLKFSLMALVSALSLP 228
Query: 253 VTVIFI 258
++ I +
Sbjct: 229 LSQIIV 234
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 260
Score = 31.1 bits (71), Expect = 3.1
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 7/137 (5%)
Query: 192 IGGAVIAALNDLGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGKYGLMFYSSVFML 251
G ++ + +L N G + L + A+ V K+ + + G L F V +L
Sbjct: 112 AGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKE---GPELLQFTGWVLLL 168
Query: 252 PVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALTTTII 311
++ + W + I + F+ N + +I+
Sbjct: 169 GALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGL----TLVDPSAASIL 224
Query: 312 GCLKNILLTYLGMFIGG 328
+ ++ LG+ I G
Sbjct: 225 ALAEPLVALLLGLLILG 241
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.
Length = 607
Score = 31.6 bits (72), Expect = 3.6
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 989 QPGDC--IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMV 1046
Q G I C S+ V + ++SRG A + L + F D +++V
Sbjct: 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD--LQIVV 291
Query: 1047 ATDAIGMGLN 1056
AT A GMG+N
Sbjct: 292 ATVAFGMGIN 301
>gnl|CDD|176874 cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an
uncharacterized subfamily of proteins. Uncharacterized
group of the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily. SRPBCC domains have a deep hydrophobic
ligand-binding pocket and they bind diverse ligands.
SRPBCC domains include the steroidogenic acute
regulatory protein (StAR)-related lipid transfer (START)
domains of mammalian STARD1-STARD15, the C-terminal
catalytic domains of the alpha oxygenase subunit of
Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases (RHOs_alpha_C), Class I and II
phosphatidylinositol transfer proteins (PITPs), Bet v 1
(the major pollen allergen of white birch, Betula
verrucosa), CoxG, CalC, and related proteins. Other
members of the superfamily include PYR/PYL/RCAR plant
proteins, the aromatase/cyclase (ARO/CYC) domains of
proteins such as Streptomyces glaucescens
tetracenomycin, and the SRPBCC domains of Streptococcus
mutans Smu.440 and related proteins.
Length = 140
Score = 29.9 bits (68), Expect = 4.0
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 775 ISDLRNPAEWYPNARSISRRIIFHAGPTNSGKTYHALERFL 815
++D N EW P + + GP G YH + +FL
Sbjct: 18 LADFENAPEWDPGVVEVEKI---TDGPVGVGTRYHQVRKFL 55
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 30.9 bits (70), Expect = 4.8
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 515 ELTVPVHVKPNTDPTDANVGQELT------------GGSIDKSETVKILNKFYQRQEIKI 562
E+ +P +P +P D + + L GG I+ +E LN F +R +I +
Sbjct: 183 EVNLP-SYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPV 241
Query: 563 AAMDHGLDNTPSSH 576
G +SH
Sbjct: 242 VTTLLGQGTIATSH 255
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA
ligase-associated. Members of this protein family are
DEAD/DEAH box helicases found associated with a
bacterial ATP-dependent DNA ligase, part of a four-gene
system that occurs in about 12 % of prokaryotic
reference genomes. The actual motif in this family is
DE[VILW]H.
Length = 803
Score = 30.6 bits (70), Expect = 7.2
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 22/69 (31%)
Query: 798 HAGPTNSGKTYHALERFLSAESGVYCGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPL 857
A PT SGKT + L AGP K H L Y PL
Sbjct: 34 IA-PTGSGKTL-----------AGFLPSLIDLAGPEKPKKGLHTL----------YITPL 71
Query: 858 KMLATEVFK 866
+ LA ++ +
Sbjct: 72 RALAVDIAR 80
>gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional.
Length = 157
Score = 29.4 bits (66), Expect = 7.7
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 180 PNRSVKITVGMMIGGAVIAALNDLGYNFQGYVFVLLNNFLTAVNGVYTKKKLDPKKDMGK 239
+R + I+ G++IGGA+ L+ + Y GYV LN +N + D G
Sbjct: 87 GSRWMLISAGLLIGGALANVLDRVIY---GYVLDFLNMSCCGINNPFVFNLADVFIFAGA 143
Query: 240 YGLMFYS 246
GL+ ++
Sbjct: 144 AGLVLFT 150
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 29.7 bits (68), Expect = 7.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Query: 213 VLLNNFLTAVNGVYTKKKLDPKKD 236
VLL T V+GVY DPKKD
Sbjct: 151 VLLK--ATNVDGVYDA---DPKKD 169
>gnl|CDD|183607 PRK12579, PRK12579, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 258
Score = 29.7 bits (67), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 312 GCLKNILLTYLGMFIGGDYVYSVNNFIGINI 342
G L +LL LGMF+ G Y+++ G +
Sbjct: 179 GALLFMLLGVLGMFVSGYYLFNFTELNGYPV 209
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Escherichia
coli Wzx and related proteins from other gram-negative
bacteria are thought to act as flippases, assisting in
the membrane translocation of lipopolysaccharides
including those containing O-antigens. Proteins from the
MATE family are involved in exporting metabolites across
the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 402
Score = 29.8 bits (68), Expect = 9.2
Identities = 46/329 (13%), Positives = 101/329 (30%), Gaps = 73/329 (22%)
Query: 46 SSHTKEAVSLVNYDTTIAKISTALF-YALCSLFI-TIVNKSVLTSYVFPSFKIVALGQLL 103
+ + KE + + + + K+ + L LF I + I+AL
Sbjct: 65 ARYRKEKIREIISTSLVLKLILGILALLLLFLFAFLIAFYDPELVLLL---YILALSLPF 121
Query: 104 TTVVVLYVG-----KKLRFIQFPNYHRNIFFELMPLPFIYLGNMVFGLGGTKELSLPMFT 158
+ + L+ G +K+++I ++ ++ L + LG + G +
Sbjct: 122 SALNSLFRGIFQGFEKMKYIVIARIIESVLSLILALILVLLGGGLIGFALA-------YL 174
Query: 159 MLRRFSILMTMIAEYYVLHIVPNRSVKITVG-----------MMIGGAV----------- 196
+ S ++ + Y I+ + + + + G
Sbjct: 175 IASVLSAILLLY--IYRKKILLPKFFSFDLKLAKELLRFSIPLALSGIFSLIYTRIDTIM 232
Query: 197 ---IAALNDLG-YNFQGYVFVLLNNFLTAVNGVYT-----KKKLDPKKDMGKYGLMF-YS 246
+G YN + LL +A++ K D + F Y
Sbjct: 233 LGYFLGDAAVGIYNAAYRIAELLLFIPSAISTALFPRISELYKNDKDELKKLLKKSFKYL 292
Query: 247 SVFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSC------CMGFILNYSIMLCT 300
+ LP+ + + E + + F +++ + GF+ + +
Sbjct: 293 FLISLPIAIGLFLFA---------EPIITLLFGEEYLPAALVLQILAWGFLFIFLNGIFG 343
Query: 301 QYNSA-------LTTTIIGCLKNILLTYL 322
A L +IG L N++L L
Sbjct: 344 SILQAIGKQKLTLKILLIGALLNVILNLL 372
>gnl|CDD|179313 PRK01637, PRK01637, hypothetical protein; Reviewed.
Length = 286
Score = 29.9 bits (68), Expect = 9.4
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 159 MLRRFSILMTMIAEYYVLHIVPNRSVKITVGMMIGGAVIAAL 200
+LR +L++ ++ + + +VPN+ V ++ GA++AAL
Sbjct: 174 LLRILPLLLSWLSFWLLYSVVPNKKVPFRHALV--GALVAAL 213
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional.
Length = 720
Score = 30.2 bits (68), Expect = 9.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1094 KVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
KV+ AT + G+NL RVI + S G +I ++ + Q+ GRAGR
Sbjct: 323 KVITATPTLSAGINLPAFRVIIRDTKRYS--NFGWEDIPVLEIQ---QMMGRAGR 372
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 29.8 bits (67), Expect = 9.9
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 68 ALFYALCSLFITIVNKSVLTSYVFPSFKIVALGQLLTTVVVLYVGKKLRFIQFPNYHRNI 127
AL AL T + K + + L QLL +++L + F +
Sbjct: 159 ALAAALLWALYTALVKRLS---RLGPVTLALLLQLLLALLLL-------LLFFLSGFGAP 208
Query: 128 FFELMPLPFIYLGNMVFGLG------GTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPN 181
L +YLG GL + L + +L + + +L +
Sbjct: 209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS 268
Query: 182 RSVKITVGMMIGGAVIAAL 200
+ + +++ G ++A+L
Sbjct: 269 PAQLLGAALVVLGVLLASL 287
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 64,688,111
Number of extensions: 6561701
Number of successful extensions: 5790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5748
Number of HSP's successfully gapped: 108
Length of query: 1269
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1161
Effective length of database: 6,147,370
Effective search space: 7137096570
Effective search space used: 7137096570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.7 bits)