RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12699
(1269 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus
[TaxId: 11089]}
Length = 299
Score = 53.1 bits (127), Expect = 8e-08
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 1060 IESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSL- 1118
+ G V V+ + ++ATD MG NL + RV+
Sbjct: 56 LRKAGKSVVVLNRKTFE----REYPTIKQKKPDF--ILATDIAEMGANLCVERVLDCRTA 109
Query: 1119 IKPSLNEKGER----EIDLISVSAALQIAGRAGRF 1149
KP L ++G + IS S+A Q GR GR
Sbjct: 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN 144
Score = 42.7 bits (100), Expect = 2e-04
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 10/87 (11%)
Query: 989 QPGDC-IVCFSKNDVYTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVA 1047
S ++ + G V V+ + ++A
Sbjct: 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFE----REYPTIKQKKPDF--ILA 88
Query: 1048 TDAIGMGLNF---RGIESRGTEVAVIY 1071
TD MG N R ++ R V+
Sbjct: 89 TDIAEMGANLCVERVLDCRTAFKPVLV 115
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 52.6 bits (125), Expect = 1e-07
Identities = 36/326 (11%), Positives = 79/326 (24%), Gaps = 61/326 (18%)
Query: 830 AGPTNSGKTYHALERFLSAESG-----VYCGPLKMLATEVFKKSNDRGTPCDLITGEEKK 884
+GKT L + + P +++A E+ + +
Sbjct: 15 DLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEH 74
Query: 885 FIQGEEKPANH--VACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIH 942
+ H + Y + ++DE + R + +
Sbjct: 75 TGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAA---RGYISTRVEMGE 131
Query: 943 VCGEAGAVDLVKAIMMTTNEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDV 1002
G + + + +R + +S + + + S
Sbjct: 132 AAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAG 191
Query: 1003 YTVSRGIESRGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNFRGIES 1062
++ + G +V + K + N +V TD MG NF
Sbjct: 192 NDIAACLRKNGKKVIQLSR------KTFDSEYIKTRTNDWDFVVTTDISEMGANF----- 240
Query: 1063 RGTEVAVIYGSLPPTTKLAQASKFNDPDNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPS 1122
+ ++ ++ VI +
Sbjct: 241 -----------------------------KAERVIDP-------RRCMKPVILTDGEERV 264
Query: 1123 LNEKGEREIDLISVSAALQIAGRAGR 1148
+ ++ S+A Q GR GR
Sbjct: 265 ILAGPMP----VTHSSAAQRRGRVGR 286
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 201
Score = 38.7 bits (89), Expect = 0.002
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 1030 AQASKFNDPDNPCKVMVATDAIGMGLNFRGIESRGTEVAVIYGSLPPTTKLAQASKFNDP 1089
A +K+ + + K ++ + M +G A + L + F
Sbjct: 62 AITAKYVENEGLEKAILEENEGEMSRKLAECVRKG--AAFHHAGLLNGQRRVVEDAFRRG 119
Query: 1090 DNPCKVMVATDAIGMGLNLSIRRVIFYSLIKPSLNEKGEREIDLISVSAALQIAGRAGRF 1149
+ KV+VAT + G+NL RRVI SL + + I VS Q+AGRAGR
Sbjct: 120 N--IKVVVATPTLAAGVNLPARRVIVRSL------YRFDGYSKRIKVSEYKQMAGRAGRP 171
Query: 1150 NTHFE 1154
Sbjct: 172 GMDER 176
Score = 35.7 bits (81), Expect = 0.019
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 1174 ISVSAALQIAGRAGRFNTHFE-KGFVTTFKPDDLPILKNLLAQSPE 1218
I VS Q+AGRAGR + + K D +K + PE
Sbjct: 156 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 201
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 37.0 bits (85), Expect = 0.003
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 824 GPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEK 883
G ++ GP +GKT + R E + VFK D + ++ +
Sbjct: 2 GWIEFITGPMFAGKTAELIRRLHRLEY-------ADVKYLVFKPKIDTRSIRNIQSRTGT 54
Query: 884 KFIQGEEKPANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIHV 943
E + A + + S N +V IDE+Q D A +L + +
Sbjct: 55 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVAN---ILAENGFVVII 111
Query: 944 CG 945
G
Sbjct: 112 SG 113
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 35.6 bits (81), Expect = 0.031
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 1063 RGTEVAVIYGSLPPTTKLAQASKFNDP------DNPCKVMVATDAIGMGLNLS-IRRVIF 1115
G + G + + V+VAT GL++ + V+F
Sbjct: 184 DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF 243
Query: 1116 YSLIKPSLNEKGEREIDLISVSAALQIAGRAGR 1148
Y + S ++Q GR GR
Sbjct: 244 YEPVP--------------SAIRSIQRRGRTGR 262
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 31.2 bits (70), Expect = 0.35
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 824 GPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFK-KSNDRGTPCDLITGEE 882
G +++ GP SGK+ + R + V K + R +
Sbjct: 2 GQIQVILGPMFSGKSTELMRRVRRFQI-------AQYKCLVIKYAKDTRYSSS------- 47
Query: 883 KKFIQGEEKPANHVACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEIH 942
A ++ + V IDE Q DI + A+ K +
Sbjct: 48 FCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEGQFFPDI---VEFCEAMANAG-KTVI 103
Query: 943 VCG 945
V
Sbjct: 104 VAA 106
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 30.8 bits (69), Expect = 0.44
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 16/124 (12%)
Query: 823 CGPLKIHAGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEE 882
G +++ GP SGK+ + R A+ +VFK D + +
Sbjct: 6 HGWVEVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVV--- 55
Query: 883 KKFIQGEEKPANHV-ACTVEMTSVNIPYEVAVIDEIQMMRDITRGWAWTRALLGLMAKEI 941
GE++ A + + EV IDE+Q + + +
Sbjct: 56 --SHMGEKEQAVAIKNSREILKYFEEDTEVIAIDEVQFF---DDEIVEIVNKIAESGRRV 110
Query: 942 HVCG 945
G
Sbjct: 111 ICAG 114
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
{Escherichia coli [TaxId: 562]}
Length = 501
Score = 31.1 bits (70), Expect = 0.89
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 21/121 (17%)
Query: 248 VFMLPVTVIFIYLSDDYAKVLEYEYLWDMWFQIQFILSCCMGFILNYSIMLCTQYNSALT 307
+L V L + + + + + C G + + N
Sbjct: 347 GVLLAVPGADFVLHNSLFLIAHFHNVIIGGV----VFGCFAGMTYWWPKAFGFKLNETWG 402
Query: 308 -----TTIIGCLKNILLTYLGMFIGG-------DYVYSVNNFIGIN-ISIIGSILYTIVT 354
IIG + ++ ++ G F + I+ G++L +
Sbjct: 403 KRAFWFWIIG----FFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGI 458
Query: 355 F 355
Sbjct: 459 L 459
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein
NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Length = 81
Score = 27.3 bits (60), Expect = 2.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 419 NEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCI 452
D+ V K +T +IE+ V +++++ C+
Sbjct: 22 ARDISVLGKKGVTTFRIENGEVKVVESVEGDTCV 55
Score = 27.3 bits (60), Expect = 2.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 961 NEDVEVYKYKRLTELQIEDSAVGSLDNIQPGDCI 994
D+ V K +T +IE+ V +++++ C+
Sbjct: 22 ARDISVLGKKGVTTFRIENGEVKVVESVEGDTCV 55
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 3.8
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 10/116 (8%)
Query: 830 AGPTNSGKTYHALERFLSAESGVYCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGE 889
+GKT L + L+ + L + T V + + F
Sbjct: 13 DFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHG 72
Query: 890 EKPANHVACTVEMTS-------VNIPYEVAVIDEIQMM---RDITRGWAWTRALLG 935
A + + +EV ++DE + RGWA RA
Sbjct: 73 SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN 128
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.9 bits (61), Expect = 4.5
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 2/91 (2%)
Query: 831 GPTNSGKTYHALERFLSAESGV-YCGPLKMLATEVFKKSNDRGTPCDLITGEEKKFIQGE 889
PT SGK+ + + V P + I + G
Sbjct: 15 APTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGS 74
Query: 890 EKPANHVACTVEMTSVNIP-YEVAVIDEIQM 919
+ + + Y++ + DE
Sbjct: 75 PITYSTYGKFLADGGCSGGAYDIIICDECHS 105
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 28.6 bits (63), Expect = 5.1
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 16/155 (10%)
Query: 241 GLMFYSSVFMLPVTV------IFIYLSDDYAKVLEYEYLWDMWFQIQFI--LSCCMGFIL 292
+ F+ + + FI L +++ +L +WF + F L+ + +
Sbjct: 298 AVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQ 357
Query: 293 NYSIMLCTQYNSALTTTIIGCLKNILLTYLGMFIGGDYVYSVNNFIGINISIIGSILYTI 352
L + + ++ + + + + ++ + G + + I
Sbjct: 358 PMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELI 417
Query: 353 VTFKPAPVKKQTVTNEVAVIDEIQMMRDITRGWAW 387
+ F K +EI I +
Sbjct: 418 IFFWIFGADK--------AWEEINRGGIIKVPRIY 444
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 27.2 bits (59), Expect = 8.1
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 8/133 (6%)
Query: 654 NIFFELMPLPFIYL-GNMVFGLGGTKELSLPMFTMLRRFSILMTMIAEYYVLHIVPNRYL 712
N+ L I N + L G L ++ I + +
Sbjct: 35 NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELI 93
Query: 713 QHQAYISFRRYCLETQSLPVDLHVVLSDIIQGAGHVDDMFPYYLRHAKQMFPHLDCMDDL 772
+ SL ++ + + +Y + P + +D
Sbjct: 94 LTNNSLVELGDLDPLASLKSLTYLCIL------RNPVTNKKHYRLYVIYKVPQVRVLDFQ 147
Query: 773 KKISDLRNPAEWY 785
K R AE
Sbjct: 148 KVKLKERQEAEKM 160
>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 91
Score = 26.1 bits (57), Expect = 8.4
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 418 TNEDVEVYK-YKRLTELQIEDSAVGSLDNIQPGDCIVCFSKNDVYTHQGVYTLGAEWSLG 476
+ V K Y + E S + G I V + S
Sbjct: 10 DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETV---GAGSNIYRVLSEK 66
Query: 477 IGTSSKVLVRNKKSNTTNLFVPV 499
GTS+++ + K + +L + +
Sbjct: 67 AGTSARIRLSGKGGDKRDLMIDI 89
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 26.2 bits (58), Expect = 8.4
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 1186 AGRFNTHFEKGFVT--TFKPDDL 1206
A +T FEKGF+ +D
Sbjct: 27 AAVIHTDFEKGFIRAEVIAYEDF 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,679,364
Number of extensions: 225549
Number of successful extensions: 558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 30
Length of query: 1269
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1173
Effective length of database: 1,089,516
Effective search space: 1278002268
Effective search space used: 1278002268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)