BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12705
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 63/106 (59%)
Query: 99 MYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQ 158
+YS L T L R++ FYL+ Y PS +LV +SWVSFW A+P R LG +T+LT
Sbjct: 199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTA 258
Query: 159 LGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
S LP VSYI++ DVW AC FIF +L EFA VN I G
Sbjct: 259 QSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG 304
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 8 VDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFI-----QNIWTPHIY 62
+D+ N+ E+ QL L+ W D RL Y + G+ +F+ IW P +
Sbjct: 42 IDVVNM----EYSAQLTLRESWIDKRLSYG------VKGDGQPDFVILTVGHQIWMPDTF 91
Query: 63 LTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYA 122
NE+ + + + ++L+ I DG +L+S R SL L+ + QY Y MD
Sbjct: 92 FPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVR------ISLVLSCPMYLQY--YPMDVQQ 143
Query: 123 PSILLVCISWVSF---WMAPDAVPGRTILGASTMLTFFQL 159
SI L ++ + ++ + P + +G S+ L FQL
Sbjct: 144 CSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQL 183
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1
Subunit Of Human Glycine Receptor
Length = 76
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 142 VPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIW 201
+P R LG +T+LT + +SLP VSY+++ D+W C +F+F +L E+A VN +
Sbjct: 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60
Query: 202 R 202
R
Sbjct: 61 R 61
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ F I ++LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAFIAFNILVETNLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW A L ST++ I ++LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWSTSYA--ANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 255
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 256 GAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 255
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 256 GAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVPTNLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 255
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 256 GAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWST--SYDANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 255
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 256 GAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNLPKTPYMTYT 255
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 256 GAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I + LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I +LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVECNLPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLT--FFQLGIETGSSLPNVSYIR 174
+ + P + ++ ISW +FW + L ST++ FF + +ET LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIFFNILVETN--LPKTPYMT 257
Query: 175 SNDVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 258 YTGAIIFMIYLFYFVAVIE 276
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 87 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 144
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 145 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 197
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLT--FFQLGIETGSSLPNVSYIR 174
+ + P + ++ ISW +FW + L ST++ FF + +ET LP Y+
Sbjct: 198 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIFFNILVETN--LPKTPYMT 253
Query: 175 SNDVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 254 YTGAIIFMIYLFYFVAVIE 272
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 121
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++LP Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNLPCTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
Query: 5 SKLVDI-----GNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHI---TEMVGERNFIQNI 56
+ +VDI G + + + F ++L L ++ R + HI V RN + +
Sbjct: 91 ADVVDISVSPDGTVQYLERFSARVLSPLDFR--RYPFDSQTLHIYLIVRSVDTRNIVLAV 148
Query: 57 WTPHIYLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFY 116
+ + D + L + + +++ + R + S L ++RQY Y
Sbjct: 149 ---DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDR----LESKLDYQLRISRQYFSY 201
Query: 117 LMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
+ + P + ++ ISW +FW + L ST++ I ++ P Y+
Sbjct: 202 IPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHIAFNILVETNCPKTPYMTYT 259
Query: 177 DVWFFACTVFIFLSLAE 193
F +F F+++ E
Sbjct: 260 GAIIFMIYLFYFVAVIE 276
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP---EAIWIPEIRFVNVENARDADVVD 95
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGF 115
+S+ PDG + + R A + S L R+Y F
Sbjct: 96 -------ISVSPDGTVQYLERFSARVLSPLDF-----RRYPF 125
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 178 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 235
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ MLT + T + LP + Y D A IF ++
Sbjct: 236 TSFTLMLTVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 279
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|B Chain B, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|C Chain C, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|D Chain D, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|E Chain E, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|F Chain F, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
Length = 201
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIY---LTNERDSLVLG 73
+ FKV L L WKD RL + + E + IW P I + N RD+ V+
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE---PEAIWIPEIRFVNVENARDADVVD 91
Query: 74 LYRRDMLVSILPDGDMLFSTRSRAYMYSSL 103
+S+ PDG + + R A + S L
Sbjct: 92 -------ISVSPDGTVQYLERFSARVLSPL 114
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 166 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 223
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ MLT T + LP + Y D A IF ++
Sbjct: 224 TSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 267
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 175 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 232
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ MLT T + LP + Y D A IF ++
Sbjct: 233 TSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 276
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 176 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 233
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ MLT T + LP + Y D A IF ++
Sbjct: 234 TSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 277
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 175 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 232
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ MLT T + LP + Y D A IF ++
Sbjct: 233 TSFTLMLTVVAYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 276
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 178 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 235
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ M T + T + LP + Y D A IF ++
Sbjct: 236 TSFTLMATVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 279
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 88 DMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTI 147
D L S + +S +T+ R +YL F P L++ SW FW+ ++ R
Sbjct: 178 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQ 235
Query: 148 LGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSL 191
+ M T + T + LP + Y D A IF ++
Sbjct: 236 TSFTLMSTVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAI 279
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 94 RSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDA 141
RS Y +T I+ R+ FY++ P IL+ ++ + F++ PDA
Sbjct: 222 RSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA 269
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 94 RSRAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDA 141
RS Y +T I+ R+ FY++ P IL+ ++ + F++ PDA
Sbjct: 189 RSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,852,586
Number of Sequences: 62578
Number of extensions: 221503
Number of successful extensions: 543
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 43
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)