Query psy12705
Match_columns 204
No_of_seqs 134 out of 1138
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 3.3E-52 7.1E-57 348.2 7.6 199 3-203 63-332 (459)
2 TIGR00860 LIC Cation transport 100.0 2.7E-48 5.8E-53 339.5 19.1 201 2-204 58-331 (459)
3 KOG3644|consensus 100.0 2.9E-47 6.3E-52 328.8 18.2 198 2-203 69-341 (457)
4 KOG3642|consensus 100.0 3.1E-44 6.7E-49 302.0 10.7 196 3-201 72-338 (466)
5 KOG3646|consensus 100.0 1.6E-43 3.5E-48 297.3 11.6 198 2-204 55-326 (486)
6 KOG3645|consensus 100.0 7.2E-41 1.6E-45 291.9 16.9 199 2-204 58-331 (449)
7 PF02931 Neur_chan_LBD: Neurot 99.8 5.1E-20 1.1E-24 146.3 10.8 90 2-95 29-120 (217)
8 PF02932 Neur_chan_memb: Neuro 99.7 3.3E-20 7.2E-25 144.8 -4.9 82 120-201 1-82 (237)
9 PF14494 DUF4436: Domain of un 60.0 7.1 0.00015 32.0 2.2 95 101-196 152-251 (256)
10 PRK11380 hypothetical protein; 37.2 44 0.00095 28.6 3.5 52 146-197 42-94 (353)
11 PRK04257 hypothetical protein; 36.0 1.1E+02 0.0025 20.1 4.7 17 78-94 58-76 (78)
12 PF11455 DUF3018: Protein of 34.7 15 0.00032 23.5 0.2 9 54-62 20-28 (65)
13 PF11395 DUF2873: Protein of u 34.6 81 0.0018 17.7 3.1 23 172-194 3-25 (43)
14 PF09125 COX2-transmemb: Cytoc 33.9 60 0.0013 18.1 2.5 19 180-198 19-37 (38)
15 TIGR02896 spore_III_AF stage I 26.7 2E+02 0.0044 20.1 4.9 40 151-190 8-47 (106)
16 TIGR02908 CoxD_Bacillus cytoch 23.3 82 0.0018 22.3 2.4 12 111-122 23-34 (110)
17 PF11211 DUF2997: Protein of u 21.8 1.1E+02 0.0023 18.2 2.4 14 81-94 3-16 (48)
18 PF06554 Olfactory_mark: Olfac 20.3 32 0.0007 25.1 -0.1 10 53-62 72-81 (151)
No 1
>KOG3643|consensus
Probab=100.00 E-value=3.3e-52 Score=348.22 Aligned_cols=199 Identities=37% Similarity=0.729 Sum_probs=190.3
Q ss_pred eeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeEE
Q psy12705 3 ATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLV 81 (204)
Q Consensus 3 ~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~~ 81 (204)
.++++.+|..|+| +|++++++|++|.|+||||+|+. .+.++++++....+++|+||.+|.|++++.+|+.+..|..+
T Consensus 63 i~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~--~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~l 140 (459)
T KOG3643|consen 63 ITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSS--KNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLL 140 (459)
T ss_pred EEEEEeeechhccccchhhhhhhhhhhhcCcccccCC--CCCceEEEchhhhhccccCceecccCcccccceeeecceEE
Confidence 4689999999999 99999999999999999999993 34457888888999999999999999999999999999999
Q ss_pred EEecCCeEEEEeee------------------------------------------------------------------
Q psy12705 82 SILPDGDMLFSTRS------------------------------------------------------------------ 95 (204)
Q Consensus 82 ~i~~~G~V~~~~r~------------------------------------------------------------------ 95 (204)
|+.+||+|+|+.|+
T Consensus 141 Rl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~ 220 (459)
T KOG3643|consen 141 RLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSR 220 (459)
T ss_pred EEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEE
Confidence 99999999999998
Q ss_pred ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705 96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS 171 (204)
Q Consensus 96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s 171 (204)
.+|+|+++...|+++|+.+||++++++|+++++++||++||++.|+.++|+.+|+|++|+|+++....++.||++|
T Consensus 221 ~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 221 LVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred EEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhheeeeeec
Q psy12705 172 YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY 203 (204)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~ 203 (204)
|++++|+|+.+|++|+|+|++|+++|+|..++
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~ 332 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKR 332 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998763
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=2.7e-48 Score=339.53 Aligned_cols=201 Identities=36% Similarity=0.647 Sum_probs=184.3
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++.+.+|.++|| +|++++++|++|+|+|+||+|||++++ ++.....+.++||+||++++|++++..+.....+..
T Consensus 58 ~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~--~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~ 135 (459)
T TIGR00860 58 SFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYP--GVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVL 135 (459)
T ss_pred EEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCC--CceeccccccccccCcEEeecCccccccccccCceE
Confidence 57899999999999 999999999999999999999998743 344444567999999999999999887776666778
Q ss_pred EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705 81 VSILPDGDMLFSTRS----------------------------------------------------------------- 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~----------------------------------------------------------------- 95 (204)
+++++||+|.|..|.
T Consensus 136 v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~ 215 (459)
T TIGR00860 136 VRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFELLGVYGT 215 (459)
T ss_pred EEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECCCCceEechhhccccCceEEEeeeee
Confidence 888889999998766
Q ss_pred -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705 96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168 (204)
Q Consensus 96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP 168 (204)
+++.|+++.+++++||++.||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.+|
T Consensus 216 ~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP 295 (459)
T TIGR00860 216 RYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLP 295 (459)
T ss_pred eeEecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCC
Confidence 2456899999999999999999999999999999999999999997799999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 169 NVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 169 ~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++||+|++|+|+.+|++++++|++|+++|+++++|+
T Consensus 296 ~~S~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~ 331 (459)
T TIGR00860 296 AVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKD 331 (459)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhheeEEccC
Confidence 999999999999999999999999999999999985
No 3
>KOG3644|consensus
Probab=100.00 E-value=2.9e-47 Score=328.77 Aligned_cols=198 Identities=37% Similarity=0.711 Sum_probs=183.6
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCcc-CC-C---Ccceeeeccccccccccccceeeeccccceeecee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYR-HY-A---PHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLY 75 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~-~~-~---~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~ 75 (204)
+.++++.+|.+++| +++|++|+|++++|.||||+++ .+ + .|..++.. .++||.||++|.|++...+|+.+
T Consensus 69 ~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~----~~~iW~Pd~~F~NsK~a~~H~~~ 144 (457)
T KOG3644|consen 69 SVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSL----KQKIWTPDTFFANSKSAEFHKST 144 (457)
T ss_pred EEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCccccccccccccc----CCceecCceeeecccceeeecCC
Confidence 57899999999999 9999999999999999999988 33 2 22222322 26799999999999999999999
Q ss_pred eeeeEEEEecCCeEEEEeee------------------------------------------------------------
Q psy12705 76 RRDMLVSILPDGDMLFSTRS------------------------------------------------------------ 95 (204)
Q Consensus 76 ~~~~~~~i~~~G~V~~~~r~------------------------------------------------------------ 95 (204)
.+|..++|+|||+|+++.|+
T Consensus 145 ~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~ 224 (457)
T KOG3644|consen 145 KPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSF 224 (457)
T ss_pred CCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCCCcccccCccCCceeccce
Confidence 99999999999999999987
Q ss_pred ---------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcC
Q psy12705 96 ---------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSS 166 (204)
Q Consensus 96 ---------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~ 166 (204)
++|.|++++++++++|+.+||+++.|+|+.+++++||++|||+++++++|+++|+|+||++++....+..+
T Consensus 225 ~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~ 304 (457)
T KOG3644|consen 225 STEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRN 304 (457)
T ss_pred eeccccccccCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeec
Q psy12705 167 LPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY 203 (204)
Q Consensus 167 lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~ 203 (204)
||++||++++|+|+++|++|+|+|++|.++|+++.+|
T Consensus 305 LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 305 LPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999875
No 4
>KOG3642|consensus
Probab=100.00 E-value=3.1e-44 Score=301.97 Aligned_cols=196 Identities=33% Similarity=0.625 Sum_probs=186.3
Q ss_pred eeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeEE
Q psy12705 3 ATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDMLV 81 (204)
Q Consensus 3 ~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~~ 81 (204)
..+++.+...|++ ++++++|.+++|.|.|.||.++.... .+.+.....++||+||.+|.|++++..|..+.+|..+
T Consensus 72 ~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~---~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~ 148 (466)
T KOG3642|consen 72 TDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQE---ALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLV 148 (466)
T ss_pred EEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcch---hhccchhhhcCcccCCcccccCcccceeeccCCCceE
Confidence 4688999999999 99999999999999999999995322 2666677889999999999999999999999999999
Q ss_pred EEecCCeEEEEeee------------------------------------------------------------------
Q psy12705 82 SILPDGDMLFSTRS------------------------------------------------------------------ 95 (204)
Q Consensus 82 ~i~~~G~V~~~~r~------------------------------------------------------------------ 95 (204)
||..||+|.|+.|+
T Consensus 149 Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~~VeV~~~~~~~L~Qf~l~g~~~~te 228 (466)
T KOG3642|consen 149 RIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKRSVEVNETDSWSLDQFDLLGVSVGTE 228 (466)
T ss_pred EEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecccEEEcCCCCccccceeeeccccccc
Confidence 99999999999988
Q ss_pred ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705 96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS 171 (204)
Q Consensus 96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s 171 (204)
..|+|+.++..|+++|+.+||+++.++||++.+++||++||+..|++++|.++|+|++|+|+++....+.++|+++
T Consensus 229 ~i~t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVs 308 (466)
T KOG3642|consen 229 DIKTSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVS 308 (466)
T ss_pred ceEecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhheeeee
Q psy12705 172 YIRSNDVWFFACTVFIFLSLAEFAFVNTIW 201 (204)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~sli~~~~v~~l~ 201 (204)
|.|++|+|+++|++|+|+|++|++.|+|+.
T Consensus 309 y~TAmD~fIavCf~FvFsaliEfa~vNYft 338 (466)
T KOG3642|consen 309 YATALDVFIAVCFIFVFAALVEFAVVNYFT 338 (466)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999999999999998
No 5
>KOG3646|consensus
Probab=100.00 E-value=1.6e-43 Score=297.27 Aligned_cols=198 Identities=20% Similarity=0.304 Sum_probs=181.8
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++.++||.+||| ||.+++++|++++|+|.+|+|||+++| ||+..+.+.++||+||+.+||+++++++.....|
T Consensus 55 ~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseyg--nI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN-- 130 (486)
T KOG3646|consen 55 KLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYG--NITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTN-- 130 (486)
T ss_pred EeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhC--CceeeccCCccccCCceeccccccccCCCcceee--
Confidence 56889999999999 999999999999999999999999954 4555455678999999999999999987766554
Q ss_pred EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705 81 VSILPDGDMLFSTRS----------------------------------------------------------------- 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~----------------------------------------------------------------- 95 (204)
+.++++|.|.|..+-
T Consensus 131 ~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr 210 (486)
T KOG3646|consen 131 YVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKR 210 (486)
T ss_pred EEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccc
Confidence 679999999997652
Q ss_pred -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705 96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168 (204)
Q Consensus 96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP 168 (204)
+.+.|..+.|.+++|||..||.+|+++||.++.++++++|-+|||+ |||+++++|.+|+..+|+.++++..|
T Consensus 211 ~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~P 289 (486)
T KOG3646|consen 211 EEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTP 289 (486)
T ss_pred eeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcC
Confidence 3557889999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 169 NVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 169 ~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++| .+|++++|+.+|++++.+|++.+++|+++|+|.
T Consensus 290 pTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~ 326 (486)
T KOG3646|consen 290 PTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT 326 (486)
T ss_pred CccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence 999 999999999999999999999999999999984
No 6
>KOG3645|consensus
Probab=100.00 E-value=7.2e-41 Score=291.88 Aligned_cols=199 Identities=19% Similarity=0.285 Sum_probs=178.1
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++.+.+|.+||| +|.+++++|+.++|+|+||+|||++++ +++..+.+.++||+||++++|+++++.......+
T Consensus 58 ~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~--~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~~-- 133 (449)
T KOG3645|consen 58 NFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYG--GITKIRVPSSKIWLPDIVLYNNADGDFEVEDLTN-- 133 (449)
T ss_pred EEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcC--CceEEEecHHHcCcCcEEEEecccccccccccce--
Confidence 46788999999999 999999999999999999999998843 4444455689999999999998877765544443
Q ss_pred EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705 81 VSILPDGDMLFSTRS----------------------------------------------------------------- 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~----------------------------------------------------------------- 95 (204)
+.++++|+|.+..+.
T Consensus 134 v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~ 213 (449)
T KOG3645|consen 134 VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVV 213 (449)
T ss_pred EEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeE
Confidence 789999999887554
Q ss_pred --------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCC
Q psy12705 96 --------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSL 167 (204)
Q Consensus 96 --------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~l 167 (204)
+++.|+.+.|.+++||||.||++++++||+++.+++.++||+|+++.++|+++|++++|++++++..+++.+
T Consensus 214 ~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~ 293 (449)
T KOG3645|consen 214 REEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKM 293 (449)
T ss_pred EeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhc
Confidence 123489999999999999999999999999999999999999988866999999999999999999999999
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 168 PNVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 168 P~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
|++| .+|+++.|+..++++++++++.++++.++++|+
T Consensus 294 P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~ 331 (449)
T KOG3645|consen 294 PPTSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRS 331 (449)
T ss_pred CCccCcchHHHHHHHHHHHHHHHHHHHheeEEeeeccc
Confidence 9999 599999999999999999999999999999986
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.82 E-value=5.1e-20 Score=146.34 Aligned_cols=90 Identities=28% Similarity=0.448 Sum_probs=69.3
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
++++++.+|.++|| ++++++++++.++|+|+||+|++++. +++.+.+ +.++||+||++++|..+... .....+.
T Consensus 29 ~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v---~~~~iW~P~l~~~n~~~~~~-~~~~~~~ 104 (217)
T PF02931_consen 29 SVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRV---PSSQIWTPDLYFYNSVSGSF-EITEPNS 104 (217)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEE---EGGGS----EEETTBSSSEE-ECS-SSE
T ss_pred EEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccc---cccceEecccccccccccce-ecccccc
Confidence 67899999999999 99999999999999999999999884 5555554 46799999999999555433 2233457
Q ss_pred EEEEecCCeEEEEeee
Q psy12705 80 LVSILPDGDMLFSTRS 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~ 95 (204)
.++|++||+|.+..++
T Consensus 105 ~~~v~~~G~V~~~~~~ 120 (217)
T PF02931_consen 105 NVRVYSDGTVRYSPRF 120 (217)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred cccccccchheeeecc
Confidence 7899999999998766
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.74 E-value=3.3e-20 Score=144.82 Aligned_cols=82 Identities=38% Similarity=0.777 Sum_probs=75.9
Q ss_pred hhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheee
Q psy12705 120 FYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNT 199 (204)
Q Consensus 120 ~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~ 199 (204)
+++||++++++||++||+|+++.+||+++|+|++|++++++..+++.||++||.+.+|.|+.+|+++++.+++|++++.+
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 58999999999999999999996699999999999999999999999999999999999999999999999999977665
Q ss_pred ee
Q psy12705 200 IW 201 (204)
Q Consensus 200 l~ 201 (204)
..
T Consensus 81 ~~ 82 (237)
T PF02932_consen 81 NI 82 (237)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 9
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=60.03 E-value=7.1 Score=31.98 Aligned_cols=95 Identities=9% Similarity=0.103 Sum_probs=48.8
Q ss_pred eeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCC--ceEEEcch-hHHHHHHHhhhhhcCCCCCC-chhHH
Q psy12705 101 SSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVP--GRTILGAS-TMLTFFQLGIETGSSLPNVS-YIRSN 176 (204)
Q Consensus 101 s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~--~R~~l~vt-~lL~~~~~~~~~~~~lP~~s-~~~~i 176 (204)
....+.++++|..+--.+.+++ +.++..++.++++..-...- .++..... -+-++.+-+-.+++.+|..+ .-.++
T Consensus 152 ~~~~~~i~l~Rs~~~~~F~~~i-~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~i 230 (256)
T PF14494_consen 152 GGDGVDITLKRSRGVLFFALFI-CLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWI 230 (256)
T ss_pred CceeEEEEEEccCcceehHHHH-HHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceE
Confidence 5567889999987643333322 22223334334433322111 22333333 33333344456789999998 77788
Q ss_pred HHH-HHHHHHHHHHHHHHHhh
Q psy12705 177 DVW-FFACTVFIFLSLAEFAF 196 (204)
Q Consensus 177 ~~~-~~~~~~~~~~sli~~~~ 196 (204)
|.. ++-+++.+.+|++.+++
T Consensus 231 D~~~vlW~~i~l~~~m~~~v~ 251 (256)
T PF14494_consen 231 DFAGVLWVLIALVASMVLYVV 251 (256)
T ss_pred eeeehHHHHHHHHHHHHHHHH
Confidence 873 23444444555554443
No 10
>PRK11380 hypothetical protein; Provisional
Probab=37.16 E-value=44 Score=28.58 Aligned_cols=52 Identities=13% Similarity=-0.048 Sum_probs=34.8
Q ss_pred EEEcchhHHHHHHHhh-hhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhe
Q psy12705 146 TILGASTMLTFFQLGI-ETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFV 197 (204)
Q Consensus 146 ~~l~vt~lL~~~~~~~-~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v 197 (204)
++++.|.+++.+.... +.+..+|..+|++++..=..+-+.++.+.++..+++
T Consensus 42 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 94 (353)
T PRK11380 42 WGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLIMLGLIVRAGF 94 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555665544444 446778999999998876666667777777766654
No 11
>PRK04257 hypothetical protein; Provisional
Probab=35.99 E-value=1.1e+02 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=13.2
Q ss_pred eeEEEEe--cCCeEEEEee
Q psy12705 78 DMLVSIL--PDGDMLFSTR 94 (204)
Q Consensus 78 ~~~~~i~--~~G~V~~~~r 94 (204)
-+.+.|. .||.+.|..|
T Consensus 58 HRI~~I~~~~dG~vvw~r~ 76 (78)
T PRK04257 58 HRILEIVNKKTGEILYKKR 76 (78)
T ss_pred eEEEEEEEcCCCeEEEEEe
Confidence 3556788 8999999865
No 12
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=34.71 E-value=15 Score=23.49 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=7.3
Q ss_pred cccccccee
Q psy12705 54 QNIWTPHIY 62 (204)
Q Consensus 54 ~~iW~Pdi~ 62 (204)
-+||+||.-
T Consensus 20 VqiWVPDtr 28 (65)
T PF11455_consen 20 VQIWVPDTR 28 (65)
T ss_pred ceeeCCCCC
Confidence 579999983
No 13
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=34.61 E-value=81 Score=17.67 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy12705 172 YIRSNDVWFFACTVFIFLSLAEF 194 (204)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~sli~~ 194 (204)
.++++|.|+..--++.|+.++.-
T Consensus 3 ~ltl~dfylc~l~~llflv~iml 25 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIML 25 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHH
Confidence 46788888776555555554443
No 14
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=33.94 E-value=60 Score=18.12 Aligned_cols=19 Identities=16% Similarity=0.583 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhee
Q psy12705 180 FFACTVFIFLSLAEFAFVN 198 (204)
Q Consensus 180 ~~~~~~~~~~sli~~~~v~ 198 (204)
+...++++|++++.+...+
T Consensus 19 F~l~mi~vFi~li~ytl~t 37 (38)
T PF09125_consen 19 FALAMILVFIALIGYTLAT 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455667777777776543
No 15
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=26.74 E-value=2e+02 Score=20.12 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=24.9
Q ss_pred hhHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q psy12705 151 STMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLS 190 (204)
Q Consensus 151 t~lL~~~~~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~s 190 (204)
.++.....+...+...+|..++-+.+-.+++.-++++.++
T Consensus 8 ~~i~~~~il~t~~~~llP~~~~kkYvr~v~Gl~Li~~il~ 47 (106)
T TIGR02896 8 TNIIVLILLATILEMLLPNSSLKKYVKFVVGLILMVVILN 47 (106)
T ss_pred HHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666898887777776666555555444
No 16
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=23.29 E-value=82 Score=22.33 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=6.4
Q ss_pred echhhhhHHhhh
Q psy12705 111 RQYGFYLMDFYA 122 (204)
Q Consensus 111 R~~~~y~~~~~~ 122 (204)
|....|++.+++
T Consensus 23 ~~~k~yviGFiL 34 (110)
T TIGR02908 23 EEMKKQIVTFAL 34 (110)
T ss_pred ccHHHHHHHHHH
Confidence 445556665544
No 17
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=21.77 E-value=1.1e+02 Score=18.16 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=10.9
Q ss_pred EEEecCCeEEEEee
Q psy12705 81 VSILPDGDMLFSTR 94 (204)
Q Consensus 81 ~~i~~~G~V~~~~r 94 (204)
++|++||+|.-...
T Consensus 3 ~~I~~dG~V~~~v~ 16 (48)
T PF11211_consen 3 FTIYPDGRVEEEVE 16 (48)
T ss_pred EEECCCcEEEEEEE
Confidence 67999999976543
No 18
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=20.30 E-value=32 Score=25.14 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=7.0
Q ss_pred ccccccccee
Q psy12705 53 IQNIWTPHIY 62 (204)
Q Consensus 53 ~~~iW~Pdi~ 62 (204)
.+++|+||+.
T Consensus 72 tsQ~WTPDLT 81 (151)
T PF06554_consen 72 TSQLWTPDLT 81 (151)
T ss_dssp B-TTS-TTTS
T ss_pred eccccCcchh
Confidence 5899999996
Done!