Query psy12705
Match_columns 204
No_of_seqs 134 out of 1138
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 17:35:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 2.9E-51 9.9E-56 346.5 14.5 201 2-204 31-304 (347)
2 3tlw_A GLR4197 protein, GLIC; 100.0 3.9E-49 1.3E-53 330.2 15.0 194 2-204 23-287 (321)
3 2bg9_A Acetylcholine receptor 100.0 1.1E-49 3.8E-54 339.3 3.7 197 2-204 32-302 (370)
4 2bg9_E Acetylcholine receptor 100.0 1.9E-49 6.6E-54 337.8 4.1 198 2-204 31-303 (370)
5 2bg9_C Acetylcholine receptor 100.0 5.3E-49 1.8E-53 335.0 5.8 197 2-204 34-301 (369)
6 2bg9_B Acetylcholine receptor 100.0 1.3E-48 4.4E-53 332.7 4.9 197 2-204 32-299 (370)
7 4aq5_A Acetylcholine receptor 100.0 1E-48 3.5E-53 341.0 3.2 197 2-204 56-326 (461)
8 4aq5_E Acetylcholine receptor 100.0 2.8E-48 9.7E-53 340.5 4.7 199 2-204 31-310 (488)
9 4aq5_C Acetylcholine receptor 100.0 3.3E-47 1.1E-51 336.0 7.5 197 2-204 55-337 (522)
10 4aq5_B Acetylcholine receptor 100.0 1.8E-47 6.1E-52 335.8 4.5 197 2-204 56-332 (493)
11 3rqw_A ELIC pentameric ligand 100.0 1.1E-45 3.6E-50 309.5 14.2 193 2-204 15-290 (322)
12 2ksr_A Neuronal acetylcholine 100.0 6.7E-30 2.3E-34 192.8 2.5 108 96-204 11-119 (164)
13 2lkg_A Acetylcholine receptor; 100.0 1.1E-30 3.8E-35 192.3 -3.4 107 97-204 33-140 (140)
14 2wn9_A Soluble acetylcholine r 99.9 1.8E-26 6.1E-31 184.1 8.0 115 2-122 41-226 (228)
15 2lly_A Neuronal acetylcholine 99.9 3E-27 1E-31 173.8 2.2 96 108-204 2-98 (137)
16 2qc1_B Acetylcholine receptor 99.9 2.6E-24 8.7E-29 169.9 9.5 89 2-95 33-123 (212)
17 1uw6_A Acetylcholine-binding p 99.9 5.6E-24 1.9E-28 167.8 11.1 86 2-94 31-117 (211)
18 3igq_A GLR4197 protein; plgic 99.9 3.8E-23 1.3E-27 161.8 11.0 87 2-95 19-106 (201)
19 4aoe_A Acetylcholine-binding p 99.9 6.7E-23 2.3E-27 160.7 11.5 88 2-95 32-120 (205)
20 4aod_A Acetylcholine-binding p 99.9 4.3E-23 1.5E-27 161.9 10.3 88 2-95 32-120 (205)
21 3sq6_A ACHBP, neuronal acetylc 99.9 6.7E-23 2.3E-27 160.8 10.9 86 2-95 30-119 (204)
22 4afh_A ACHBP; acetylcholine-bi 99.9 8.4E-23 2.9E-27 162.9 10.6 114 2-120 37-221 (230)
23 2bj0_A Acetylcholine-binding p 99.9 6.4E-22 2.2E-26 155.1 11.7 86 2-95 28-116 (203)
24 1oed_A Acetylcholine receptor 99.8 2.8E-23 9.7E-28 164.6 -5.1 91 113-204 1-92 (227)
25 1oed_B Acetylcholine receptor 99.8 5.4E-23 1.8E-27 165.2 -5.9 91 113-204 1-92 (250)
26 1oed_E Acetylcholine receptor 99.8 6.6E-23 2.3E-27 165.6 -5.5 92 113-204 1-93 (260)
27 1oed_C Acetylcholine receptor 99.8 1.2E-22 4.2E-27 164.0 -4.9 91 113-204 1-92 (260)
28 1vry_A Glycine receptor alpha- 99.7 9E-18 3.1E-22 109.6 0.3 62 143-204 2-63 (76)
29 1mot_A Glycine receptor alpha- 95.8 0.00044 1.5E-08 35.9 -2.1 27 143-169 2-28 (28)
30 2l4j_A YES-associated protein 30.8 14 0.00047 20.9 0.5 10 27-36 36-45 (46)
31 3fcg_A F1 capsule-anchoring pr 30.4 63 0.0022 21.0 3.8 28 73-100 21-48 (90)
32 2law_A Yorkie homolog; YAP, SM 24.9 16 0.00056 19.5 0.1 8 27-34 31-38 (38)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2.9e-51 Score=346.45 Aligned_cols=201 Identities=37% Similarity=0.666 Sum_probs=185.7
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+. +.++||+||++++|++++.++..+.++.
T Consensus 31 ~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~--~~~~IW~PDi~l~N~~~~~~~~~~~~n~ 108 (347)
T 3rhw_A 31 SVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILT--VGHQIWMPDTFFPNEKQAYKHTIDKPNV 108 (347)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECC--TTCCCCCCCEECTTEEEEEECCSSSCSE
T ss_pred EEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEec--chhceecCCEeeeccccccccccccccE
Confidence 56899999999999 99999999999999999999999874 44445432 4599999999999999998888777888
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
.++|++||+|.|..|.
T Consensus 109 ~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~ 188 (347)
T 3rhw_A 109 LIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTST 188 (347)
T ss_dssp EEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEE
T ss_pred EEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEe
Confidence 8999999999998876
Q ss_pred -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705 96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168 (204)
Q Consensus 96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP 168 (204)
.+|.|+++.+++++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.+|
T Consensus 189 ~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP 268 (347)
T 3rhw_A 189 TYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLP 268 (347)
T ss_dssp EECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCC
Confidence 1357899999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 169 NVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 169 ~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++||+|++|+|+.+|++++++|++|+++|++++++|
T Consensus 269 ~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~ 304 (347)
T 3rhw_A 269 PVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG 304 (347)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999876
No 2
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=3.9e-49 Score=330.23 Aligned_cols=194 Identities=23% Similarity=0.419 Sum_probs=178.6
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+||+++++. +..+.+.++||+||++++|++++. ..++..
T Consensus 23 ~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i---~~~~~~~~~IW~PDi~l~N~~~~~----~~~~~~ 95 (321)
T 3tlw_A 23 NTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGV---RVKTYEPEAIWIPEIRFVNVENAR----DADVVD 95 (321)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCC---SSEECCGGGSCCCCEEESSBSSCC----EEEEEE
T ss_pred EEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCe---eeecccccCeEcCcEEeecccccc----ccccee
Confidence 56899999999999 9999999999999999999999987653 444556899999999999999876 355678
Q ss_pred EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705 81 VSILPDGDMLFSTRS----------------------------------------------------------------- 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~----------------------------------------------------------------- 95 (204)
++|++||+|.|..|.
T Consensus 96 ~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~ 175 (321)
T 3tlw_A 96 ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKP 175 (321)
T ss_dssp EEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECGGGCEECTTCCBTTEEEEEEEEEEEE
T ss_pred EEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcCCcccccccccccceEEEeeEeEEee
Confidence 999999999998876
Q ss_pred -----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCC
Q psy12705 96 -----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNV 170 (204)
Q Consensus 96 -----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~ 170 (204)
++|+|+++.+++++||+++||++++++||+++++++|++|| |++ .++|+++|+|++|++++++..+++.+|++
T Consensus 176 ~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~-~~~Rv~l~it~lL~~t~~~~~~~~~lP~~ 253 (321)
T 3tlw_A 176 ANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STS-YEANVTLVVSTLIAHIAFNILVETCLPKT 253 (321)
T ss_dssp EEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred EEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCC-CCCcEEEEhhHHHHHHHHHHHHHhhCCCc
Confidence 34679999999999999999999999999999999999999 655 58999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 171 SYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 171 s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
||+|++|+|+.+|++++++|++|+++|+++++||
T Consensus 254 s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~ 287 (321)
T 3tlw_A 254 PYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVES 287 (321)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC
Confidence 9999999999999999999999999999999886
No 3
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.1e-49 Score=339.33 Aligned_cols=197 Identities=16% Similarity=0.279 Sum_probs=179.8
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+ +.++||+||++++|++++.++... +.
T Consensus 32 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~--~~ 106 (370)
T 2bg9_A 32 TVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL---PSDDVWLPDLVLYNNADGDFAIVH--MT 106 (370)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEE---EGGGSCCCCEEETTCCCSCEESCS--SC
T ss_pred EEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEe---chhhccCCcEeccccccccccccc--cc
Confidence 56899999999999 99999999999999999999999874 4444544 479999999999999998877643 45
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
.++|++||+|.|..|.
T Consensus 107 ~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~ 186 (370)
T 2bg9_A 107 KLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH 186 (370)
T ss_dssp EEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSTTSCCTTCSSEEEEEEEEEE
T ss_pred eEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCCCcccccccccceEEEEcceEEEE
Confidence 6899999999998776
Q ss_pred -------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705 96 -------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168 (204)
Q Consensus 96 -------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP 168 (204)
++|+|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.+|
T Consensus 187 ~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP 265 (370)
T 2bg9_A 187 WVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIP 265 (370)
T ss_dssp ECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCC
Confidence 1257999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 169 NVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 169 ~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++|| +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus 266 ~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~~~~r~ 302 (370)
T 2bg9_A 266 STSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRS 302 (370)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9996 99999999999999999999999999998875
No 4
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.9e-49 Score=337.85 Aligned_cols=198 Identities=16% Similarity=0.304 Sum_probs=179.6
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCc-ceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPH-ITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~-~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|||++++ .+.+ +.+.++||+||++++|++++.++.....+
T Consensus 31 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l---~v~~~~IW~PDi~~~N~~~~~~~~~~~~~- 106 (370)
T 2bg9_E 31 TLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLV---RIPSELLWLPDVVLENNVDGQFEVAYYAN- 106 (370)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCB---CCCGGGSCCCCEEESSSCCSCCBSSSSCC-
T ss_pred EEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEE---eechhccCCCCEeeccccCCccccccccc-
Confidence 56899999999999 999999999999999999999998844 4444 44569999999999999998877654444
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
+.|++||+|.|..|.
T Consensus 107 -~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~ 185 (370)
T 2bg9_E 107 -VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPAKK 185 (370)
T ss_dssp -CEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCCGGGSCCTTSSEEEEECCCCE
T ss_pred -EEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcccHhhcccccEEEEecceeEE
Confidence 569999999998776
Q ss_pred --------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCC
Q psy12705 96 --------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSL 167 (204)
Q Consensus 96 --------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~l 167 (204)
++|+|+++.+++++||+++||++++++||++++++||++||+|+++.++|+++|+|++|++++++..+++.+
T Consensus 186 ~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~l 265 (370)
T 2bg9_E 186 NYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKV 265 (370)
T ss_dssp ECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhC
Confidence 135688999999999999999999999999999999999999999779999999999999999999999999
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 168 PNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 168 P~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
|++|| +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus 266 P~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~ 303 (370)
T 2bg9_E 266 PETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRT 303 (370)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCccCCCChHHHHHHHHHHHHHHHHHHHhhheeeeccC
Confidence 99997 99999999999999999999999999998875
No 5
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=5.3e-49 Score=334.96 Aligned_cols=197 Identities=17% Similarity=0.286 Sum_probs=178.8
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+ +.++||+||++++|++++.++.....+
T Consensus 34 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~~~~- 109 (369)
T 2bg9_C 34 ALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL---RPELIWIPDIVLQNNNDGQYNVAYFCN- 109 (369)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEE---CGGGSCCCCEEETTTCSSCCBSSSSCC-
T ss_pred EEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEe---cHHhccCCcEecccccccccccccccc-
Confidence 57899999999999 99999999999999999999999884 3444544 469999999999999998877654444
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
++|++||+|.|..|.
T Consensus 110 -~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~ew~l~~~~~~~~~~~ 188 (369)
T 2bg9_C 110 -VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYG 188 (369)
T ss_dssp -EEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECCCGGGSCCTTSSEEEEECCEEEEECC
T ss_pred -EEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEecccccceeCCEEEEeeeeEEEEEEe
Confidence 679999999998776
Q ss_pred ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705 96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS 171 (204)
Q Consensus 96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s 171 (204)
++|+|+++.+++++||+++||++++++||++++++||++||+|++ .++|+++|+|++|++++++..+++.+|++|
T Consensus 189 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S 267 (369)
T 2bg9_C 189 DKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETA 267 (369)
T ss_dssp CSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCc
Confidence 145689999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 172 Y-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 172 ~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
| +|++|+|+.+|++++++|++|++++.++++|+
T Consensus 268 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~ 301 (369)
T 2bg9_C 268 LAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRT 301 (369)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhheeeeeccC
Confidence 6 99999999999999999999999998888775
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.3e-48 Score=332.73 Aligned_cols=197 Identities=19% Similarity=0.310 Sum_probs=178.6
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+||++++ +.+.+.+ +.++||+||++++|++++.++.....
T Consensus 32 ~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v---~~~~IW~PDi~~~N~~~~~~~~~~~~-- 106 (370)
T 2bg9_B 32 RVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI---PSDDVWQPDIVLMNNNDGSFEITLHV-- 106 (370)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEE---ESSSSCCCCEEESSCCCSCEESSSSC--
T ss_pred EEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEe---chhhccCCCccccccccccccccccc--
Confidence 46788999999999 99999999999999999999999884 4445554 46999999999999999887765443
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
.++|++||+|.|..|.
T Consensus 107 ~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~ 186 (370)
T 2bg9_B 107 NVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEHKPSRK 186 (370)
T ss_dssp EEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCCCCCSTTSCCTTCSSEECCCCEEE
T ss_pred eEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccCCccccccccccceEEEeccceEE
Confidence 4679999999998776
Q ss_pred ----ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC
Q psy12705 96 ----RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS 171 (204)
Q Consensus 96 ----~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s 171 (204)
++|+|+++.+++++||+++||++++++||+++++++|++||+|++ .++|+++|+|++|++++++..+++.+|++|
T Consensus 187 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S 265 (370)
T 2bg9_B 187 NWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETS 265 (370)
T ss_dssp CCCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCcc
Confidence 135689999999999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 172 Y-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 172 ~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
| +|++|+|+.+|++++++|++|++++.++++|+
T Consensus 266 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~ 299 (370)
T 2bg9_B 266 LSVPIIISYLMFIMILVAFSVILSVVVLNLHHRS 299 (370)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 6 99999999999999999999999998888775
No 7
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=1e-48 Score=341.05 Aligned_cols=197 Identities=16% Similarity=0.278 Sum_probs=179.7
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|||+++ +.+.+.+ +.++||+||++++|++++.++.... .
T Consensus 56 ~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~v---p~~~IW~PDi~l~N~~d~~~~~~~~--~ 130 (461)
T 4aq5_A 56 TVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL---PSDDVWLPDLVLYNNADGDFAIVHM--T 130 (461)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEE---EGGGSCCCCEEESSCCCSCCTTCSS--C
T ss_pred EEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEe---cCCCEECCceeeecccccccccccc--c
Confidence 56899999999999 99999999999999999999999874 4444544 5699999999999999988765433 3
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
.++|++||+|.|..|.
T Consensus 131 ~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~l~~~~~~~eW~l~~~~~~~~ 210 (461)
T 4aq5_A 131 KLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKH 210 (461)
T ss_dssp EEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCCCCSGGGCCTTCSSEEEEEEEEEE
T ss_pred ceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEeccccccHHhhhccCceEEeeeeeEEE
Confidence 4789999999998776
Q ss_pred ------ccc-cceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCC
Q psy12705 96 ------RAY-MYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168 (204)
Q Consensus 96 ------~~~-~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP 168 (204)
+.| +|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..+++.+|
T Consensus 211 ~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP 289 (461)
T 4aq5_A 211 WVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIP 289 (461)
T ss_dssp ECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeehhHHHHHHHHHHHHHHHhhcC
Confidence 124 7999999999999999999999999999999999999999998 49999999999999999999999999
Q ss_pred CCC-chhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 169 NVS-YIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 169 ~~s-~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++| ++|++|+|+.+|++++++|++|+++|.++++|+
T Consensus 290 ~tS~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~r~ 326 (461)
T 4aq5_A 290 STSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRS 326 (461)
T ss_dssp HHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCcCHHHHHHHHHHHHHHHHHHHHhhheeeeccC
Confidence 999 999999999999999999999999999999875
No 8
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=2.8e-48 Score=340.51 Aligned_cols=199 Identities=16% Similarity=0.285 Sum_probs=180.0
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++++.+|.+||| +|++++++|++|+|+|+||+||+++++ ++...+.+.++||+||++++|++++.++.....+
T Consensus 31 ~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~--gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~n-- 106 (488)
T 4aq5_E 31 TLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYE--GIDLVRIPSELLWLPDVVLENNVDGQFEVAYYAN-- 106 (488)
T ss_dssp EEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTT--TCSCCCCCTTSSCCCCEECSSSCCSCCBSCSSSC--
T ss_pred EEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcC--CceEEecCccCEECCceehhcccccccccccccc--
Confidence 57899999999999 999999999999999999999998854 3444445679999999999999998877655444
Q ss_pred EEEecCCeEEEEeee-----------------------------------------------------------------
Q psy12705 81 VSILPDGDMLFSTRS----------------------------------------------------------------- 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~----------------------------------------------------------------- 95 (204)
+.|++||+|.|..|.
T Consensus 107 v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~ 186 (488)
T 4aq5_E 107 VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIR 186 (488)
T ss_dssp CCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEE
T ss_pred EEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEE
Confidence 569999999998766
Q ss_pred --------------ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhh
Q psy12705 96 --------------RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGI 161 (204)
Q Consensus 96 --------------~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~ 161 (204)
+++.|+++.+++++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~ 266 (488)
T 4aq5_E 187 HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLF 266 (488)
T ss_dssp ECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHH
Confidence 012488999999999999999999999999999999999999999779999999999999999999
Q ss_pred hhhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 162 ETGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 162 ~~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
.+++.+|++|+ +|++|+|+.+|++++++|++|+++|+++++|+
T Consensus 267 ~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~r~ 310 (488)
T 4aq5_E 267 LIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRT 310 (488)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEccC
Confidence 99999999995 99999999999999999999999999999885
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=3.3e-47 Score=336.02 Aligned_cols=197 Identities=17% Similarity=0.285 Sum_probs=178.1
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.+||| +|++++++|++|+|+|+||+||++++ +++.+.+ +.++||+||++++|++++.++.....+
T Consensus 55 ~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~v---p~~~IW~PDi~l~N~~d~~~~~~~~~n- 130 (522)
T 4aq5_C 55 ALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRL---RPELIWIPDIVLQNNNDGQYNVAYFCN- 130 (522)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEE---CGGGSCCCCEEETTTCSSCCBSCSSCC-
T ss_pred EEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEee---ccCCEECCcEeccccccCCccccccce-
Confidence 57899999999999 99999999999999999999999884 3444444 579999999999999998877655444
Q ss_pred EEEEecCCeEEEEeee----------------------------------------c-----------------------
Q psy12705 80 LVSILPDGDMLFSTRS----------------------------------------R----------------------- 96 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~----------------------------------------~----------------------- 96 (204)
+.|++||+|.|..|. .
T Consensus 131 -v~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~g 209 (522)
T 4aq5_C 131 -VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENG 209 (522)
T ss_dssp -EEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTC
T ss_pred -EEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecc
Confidence 569999999998766 0
Q ss_pred --------------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHH
Q psy12705 97 --------------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTF 156 (204)
Q Consensus 97 --------------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~ 156 (204)
++.|+++.+++++||+++||++++++||+++++++|++||+|++ .++|+++|+|++|++
T Consensus 210 EW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~ 288 (522)
T 4aq5_C 210 EWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQ 288 (522)
T ss_dssp SEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHH
T ss_pred eEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHH
Confidence 12388999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHhhhhhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 157 FQLGIETGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 157 ~~~~~~~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++++..+++.+|++|+ +|++|+|+.+|++++++|++++++|+++++|+
T Consensus 289 tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~r~ 337 (522)
T 4aq5_C 289 AVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRT 337 (522)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEccC
Confidence 9999999999999995 99999999999999999999999999999885
No 10
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=1.8e-47 Score=335.81 Aligned_cols=197 Identities=20% Similarity=0.324 Sum_probs=177.6
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.+||| +|++++++|++|+|+|+||+||++++ +.+.+.+ +.++||+||++++|++++.++.....+
T Consensus 56 ~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v---~~~~IW~PDi~l~N~~d~~~~~~~~~n- 131 (493)
T 4aq5_B 56 RVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI---PSDDVWQPDIVLMNNNDGSFEITLHVN- 131 (493)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEE---CSCSSCCCCCEESSCCCSCEESSSSSC-
T ss_pred EEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEec---ccccCccCcEEEecccccccccccccc-
Confidence 46788999999999 99999999999999999999999773 4444444 579999999999999998887654444
Q ss_pred EEEEecCCeEEEEeee-------------------------------------c--------------------------
Q psy12705 80 LVSILPDGDMLFSTRS-------------------------------------R-------------------------- 96 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~-------------------------------------~-------------------------- 96 (204)
+.|++||+|.|..|. .
T Consensus 132 -v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW 210 (493)
T 4aq5_B 132 -VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQW 210 (493)
T ss_dssp -EEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSS
T ss_pred -eEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccce
Confidence 679999999998776 0
Q ss_pred --------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhh
Q psy12705 97 --------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIE 162 (204)
Q Consensus 97 --------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~ 162 (204)
++.|+++.+++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..
T Consensus 211 ~l~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~ 289 (493)
T 4aq5_B 211 SIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLL 289 (493)
T ss_dssp BCCCCCCEECCCTTSSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHH
T ss_pred eeeeeeEEEEeecCCCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHH
Confidence 114778999999999999999999999999999999999999997 89999999999999999999
Q ss_pred hhcCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 163 TGSSLPNVSY-IRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 163 ~~~~lP~~s~-~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
+++.+|++|+ +|++|+|+.+|++++++|++|+++|.++++|+
T Consensus 290 v~~~LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~~r~ 332 (493)
T 4aq5_B 290 LADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRS 332 (493)
T ss_dssp HHHHTTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCccccCCCchHhHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 9999999996 99999999999999999999999999999875
No 11
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=1.1e-45 Score=309.51 Aligned_cols=193 Identities=22% Similarity=0.345 Sum_probs=175.2
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeecc-----ccccccccccceeeeccccceeecee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGE-----RNFIQNIWTPHIYLTNERDSLVLGLY 75 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~-----~~~~~~iW~Pdi~~~N~~~~~~~~~~ 75 (204)
+.++++.+|.++|| +|++++++|++|+|+|+||+|++.+ .+.+. +.+.++||+||++++|++++..
T Consensus 15 ~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~~~~----~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~---- 86 (322)
T 3rqw_A 15 SVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDK----PLIVENTQIERWINNGLWVPALEFINVVGSPD---- 86 (322)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCSTTS----CEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----
T ss_pred EEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCCCCC----ceeecchhhcccccccccCCcEEEEcccCccc----
Confidence 57899999999999 9999999999999999999995432 34433 3458999999999999999775
Q ss_pred eeeeEEEEecCCeEEEEeee-----------------------------------------c------------------
Q psy12705 76 RRDMLVSILPDGDMLFSTRS-----------------------------------------R------------------ 96 (204)
Q Consensus 76 ~~~~~~~i~~~G~V~~~~r~-----------------------------------------~------------------ 96 (204)
.++..+++++||+|.|..|. .
T Consensus 87 ~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~ew~l~~~~ 166 (322)
T 3rqw_A 87 TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKA 166 (322)
T ss_dssp EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSSCSSSSEEECCSC
T ss_pred ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCCCCCCceEEEeee
Confidence 45678999999999998876 0
Q ss_pred ------------------cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHH
Q psy12705 97 ------------------AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQ 158 (204)
Q Consensus 97 ------------------~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~ 158 (204)
+|+|+++.+++++||+++||++++++||+++++++|++||+| + .++|+++|+|++|++++
T Consensus 167 ~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~-~~~Rv~l~it~lL~~~~ 244 (322)
T 3rqw_A 167 STHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-S-FSERLQTSFTLMLTVVA 244 (322)
T ss_dssp EECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-S-HHHHHHHHHHHHHHHHH
T ss_pred EEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-C-CCCcEEEEEehHHHHHH
Confidence 345788999999999999999999999999999999999999 4 59999999999999999
Q ss_pred HhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 159 LGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 159 ~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++..+++.+|++||+|++|+|+.+|++++++|++|+++|+++++||
T Consensus 245 ~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~~~ 290 (322)
T 3rqw_A 245 YAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG 290 (322)
T ss_dssp HHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999886
No 12
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.95 E-value=6.7e-30 Score=192.84 Aligned_cols=108 Identities=15% Similarity=0.228 Sum_probs=92.2
Q ss_pred ccccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chh
Q psy12705 96 RAYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIR 174 (204)
Q Consensus 96 ~~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~ 174 (204)
++++|+++.+++++|||++||.+++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++++|++| ++|
T Consensus 11 ~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vP 89 (164)
T 2ksr_A 11 VDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVP 89 (164)
T ss_dssp --------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHH
T ss_pred CCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCC
Confidence 4678999999999999999999999999999999999999999998 99999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 175 SNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 175 ~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++|+|+..|++++++|++|+++|.++++|+
T Consensus 90 lI~~y~~~~m~~v~~sll~tv~Vl~~~~r~ 119 (164)
T 2ksr_A 90 LVGKYLMFTMVLVTFSIVTSVCVLNVHHRS 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 999999999999999999999999998875
No 13
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.95 E-value=1.1e-30 Score=192.27 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=103.4
Q ss_pred cccceeEEEEEEEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhH
Q psy12705 97 AYMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRS 175 (204)
Q Consensus 97 ~~~~s~l~~~~~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~ 175 (204)
+|+|+++.+++++|||++||.+++++||+++++++|++||+|||+ +||+++|+|++|++++++..+++++|++| ++|+
T Consensus 33 ~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPl 111 (140)
T 2lkg_A 33 AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPL 111 (140)
T ss_dssp HHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHH
T ss_pred CCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccH
Confidence 467899999999999999999999999999999999999999997 89999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 176 NDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 176 i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
+|+|+..|++++++|++|++++.++++|+
T Consensus 112 I~~y~~~~~~~v~~sll~tv~Vln~~~r~ 140 (140)
T 2lkg_A 112 IGKYMLFTKEFVESSIKITEEVINTHHRS 140 (140)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 99999999999999999999999988875
No 14
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.93 E-value=1.8e-26 Score=184.10 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=91.8
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+ +.++||+||++++|++++.++.. +.
T Consensus 41 ~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~---~~~~IW~PDi~l~N~~~~~~~~~---~~ 114 (228)
T 2wn9_A 41 TLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRT---SAADIWTPDITAYSSTRPVQVLS---PQ 114 (228)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEE---EGGGSCCCCEEESSBSSCCEECS---CC
T ss_pred EEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEe---cHHHccCCceecccccccccccc---cc
Confidence 56899999999999 99999999999999999999999874 4444544 46999999999999999887653 67
Q ss_pred EEEEecCCeEEEEeee----------------------------------------------------------------
Q psy12705 80 LVSILPDGDMLFSTRS---------------------------------------------------------------- 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~---------------------------------------------------------------- 95 (204)
.++|++||+|.|..|+
T Consensus 115 ~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~D~Q~C~l~f~Sw~y~~~~i~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~ 194 (228)
T 2wn9_A 115 IAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQV 194 (228)
T ss_dssp EEEEETEEEEEECCEEEEEEECCCTTTTSTTCEEEEEEEEESSCCTTTEEEECSCSBCBCTTCCTTCSEEEEEEEEEEEE
T ss_pred eEEEeCCeEEEEeCCEEEEEECCCCCCCCCcCcEeeEEEEeecccccEEEEEecCCccchhhceecCCEEEEEEEEEEEE
Confidence 8999999999886442
Q ss_pred -----ccccceeEEEEEEEEechhhhhHHhhh
Q psy12705 96 -----RAYMYSSLTLTFILNRQYGFYLMDFYA 122 (204)
Q Consensus 96 -----~~~~~s~l~~~~~l~R~~~~y~~~~~~ 122 (204)
++|.|+++.++|++||+++||++++++
T Consensus 195 ~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 195 QHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp ECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred EeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 347799999999999999999999864
No 15
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.93 E-value=3e-27 Score=173.79 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=92.1
Q ss_pred EEEechhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHH
Q psy12705 108 ILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVF 186 (204)
Q Consensus 108 ~l~R~~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~ 186 (204)
++|||+.||.+++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++++|++| ++|++|+|+..|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 5799999999999999999999999999999998 89999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHhheeeeeecC
Q psy12705 187 IFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 187 ~~~sli~~~~v~~l~~~~ 204 (204)
+++|++|++++.++++|+
T Consensus 81 v~~sl~~tv~V~~~~~r~ 98 (137)
T 2lly_A 81 VTLSIVITVFVLNVHHRS 98 (137)
T ss_dssp HHHHHHHHHHHHHCCSSC
T ss_pred HHHHhhhhhhhhhHHhcC
Confidence 999999999999999885
No 16
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.91 E-value=2.6e-24 Score=169.87 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=76.7
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeeceeeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM 79 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~ 79 (204)
+.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+ +.++||+||++++|++++.++.... .
T Consensus 33 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~---~~~~iW~PDi~~~N~~~~~~~~~~~--~ 107 (212)
T 2qc1_B 33 TVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI---PSEKIWRPDVVLYNNADGDFAIVKF--T 107 (212)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEE---CGGGSCCCCEEECCBTTTSSCEECC--C
T ss_pred EEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEc---chhhccCCceeccccccccccccce--e
Confidence 57899999999999 99999999999999999999999874 4555555 4699999999999999988765433 4
Q ss_pred EEEEecCCeEEEEeee
Q psy12705 80 LVSILPDGDMLFSTRS 95 (204)
Q Consensus 80 ~~~i~~~G~V~~~~r~ 95 (204)
.++|++||+|.|..|+
T Consensus 108 ~~~v~~~G~V~~~~~~ 123 (212)
T 2qc1_B 108 KVLLDYTGHITWTPPA 123 (212)
T ss_dssp CEEEETTCEEEECCEE
T ss_pred eEEEECCeeEEEEeee
Confidence 6899999999998766
No 17
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.90 E-value=5.6e-24 Score=167.78 Aligned_cols=86 Identities=20% Similarity=0.357 Sum_probs=73.4
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++++.+|.+||| +|.+++++|++|+|+|+||+|||++++. .+.+ +.++||+||++++|++++. ..+.. ..
T Consensus 31 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~-~l~~---~~~~iW~PDi~~~N~~~~~--~~~~~-~~ 103 (211)
T 1uw6_A 31 SVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD-QVSV---PISSLWVPDLAAYNAISKP--EVLTP-QL 103 (211)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS-EEEE---EGGGSCCCCEEETTBCSCC--EECSC-CE
T ss_pred EEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC-eEEc---cHHHccCCCEeeecccccc--cccee-eE
Confidence 57899999999999 9999999999999999999999988553 4554 4699999999999999876 33333 78
Q ss_pred EEEecCCeEEEEee
Q psy12705 81 VSILPDGDMLFSTR 94 (204)
Q Consensus 81 ~~i~~~G~V~~~~r 94 (204)
++|++||+|.|..|
T Consensus 104 ~~i~~~G~V~~~~~ 117 (211)
T 1uw6_A 104 ARVVSDGEVLYMPS 117 (211)
T ss_dssp EEEETTSEEEECCE
T ss_pred EEEeCCceEEEeCC
Confidence 99999999988644
No 18
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.89 E-value=3.8e-23 Score=161.76 Aligned_cols=87 Identities=25% Similarity=0.394 Sum_probs=75.3
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++++.+|.+||| +|.+++++|++|.|+|+||+||+++++ +.....+.++||+||++++|+++... ..+..
T Consensus 19 ~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~---i~~~~~~~~~IW~PDi~l~N~~~~~~----~~~~~ 91 (201)
T 3igq_A 19 NTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSG---VRVKTYEPEAIWIPEIRFVNVENARD----ADVVD 91 (201)
T ss_dssp EEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHT---CSCEECCGGGSCCCCEEESSBSSSCE----EEEEE
T ss_pred EEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCC---EeEecccccCcCccCEEEEccccccc----ccceE
Confidence 57899999999999 999999999999999999999997644 44445578999999999999987542 34678
Q ss_pred EEEecCCeEEEEeee
Q psy12705 81 VSILPDGDMLFSTRS 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~ 95 (204)
++|++||+|.|..|+
T Consensus 92 v~v~~~G~V~~~~~~ 106 (201)
T 3igq_A 92 ISVSPDGTVQYLERF 106 (201)
T ss_dssp EEECTTCEEEEEEEE
T ss_pred EEEeCCCcEEEecce
Confidence 999999999998876
No 19
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.89 E-value=6.7e-23 Score=160.69 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=74.5
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++.|.+|.+||| +|.+++++|++|+|+|+||+||+..++++.+.+ +.++||+||++++|+++...+ ..+..
T Consensus 32 ~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v---~~~~IW~PDi~l~N~~~~~~~---~~~~~ 105 (205)
T 4aoe_A 32 SFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTL---PSKYIWLPHIEVYNSIGKPGI---HSDQL 105 (205)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEE---EGGGSCCCCCEETTBSSCCEE---CSCCE
T ss_pred EEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEe---CHHHhccccEEEecccccccc---ccceE
Confidence 57899999999999 999999999999999999999974355555544 579999999999999875432 34567
Q ss_pred EEEecCCeEEEEeee
Q psy12705 81 VSILPDGDMLFSTRS 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~ 95 (204)
++|++||+|.|..|.
T Consensus 106 v~v~~~G~V~~~~~~ 120 (205)
T 4aoe_A 106 VRVYKDGTVTFVPQY 120 (205)
T ss_dssp EEEETTSEEEECCEE
T ss_pred EEEeCCcEEEEeCcE
Confidence 899999999998776
No 20
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.89 E-value=4.3e-23 Score=161.88 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=73.8
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCCcceeeeccccccccccccceeeeccccceeeceeeeeeE
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDML 80 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~~~~~~ 80 (204)
+.++.|.+|.+||| +|.+++++|++|+|+|+||+||+.-++++.+ ..+.++||+||++++|+++... ...+..
T Consensus 32 ~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i---~v~~~~IW~PDi~l~N~~~~~~---~~~~~~ 105 (205)
T 4aod_A 32 SFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKEL---TVPIAEIWTPDIFIFDSVGAPE---IFSDKL 105 (205)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEE---EEEGGGSCCCCEEETTBSSCCE---ECSCCE
T ss_pred EEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEe---eccHHhcCcCCEEEEcccccce---eecceE
Confidence 57899999999999 9999999999999999999999743444444 4457999999999999987543 234567
Q ss_pred EEEecCCeEEEEeee
Q psy12705 81 VSILPDGDMLFSTRS 95 (204)
Q Consensus 81 ~~i~~~G~V~~~~r~ 95 (204)
++|++||+|.|..|.
T Consensus 106 ~~v~~~G~V~~~~~~ 120 (205)
T 4aod_A 106 ARVSQDGTVTYVPQL 120 (205)
T ss_dssp EEEETTSEEEECCEE
T ss_pred EEEecCCEEEEeccE
Confidence 899999999998766
No 21
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.89 E-value=6.7e-23 Score=160.81 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=73.5
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeecccc--ceeeceeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERD--SLVLGLYRR 77 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~--~~~~~~~~~ 77 (204)
+.++++.+|.+||| +|.+++++|++|+|+|+||+|||+++ +++.+.+ +.++||+||++++|+++ +.++.
T Consensus 30 ~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~---~~~~iW~PDi~~~N~~~~~~~~~~---- 102 (204)
T 3sq6_A 30 YFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSV---PISSLWVPDLAAYNAISKPEVLTP---- 102 (204)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEE---EGGGSCCCCEEETTBSSCCEECSC----
T ss_pred EEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEc---CHHHCcCCCEEeEcccccCCcccc----
Confidence 57899999999999 99999999999999999999999884 4444444 57999999999999998 65543
Q ss_pred eeEEEEecCCeEEEEeee
Q psy12705 78 DMLVSILPDGDMLFSTRS 95 (204)
Q Consensus 78 ~~~~~i~~~G~V~~~~r~ 95 (204)
..++|++||+|.|..|+
T Consensus 103 -~~v~v~~~G~V~~~~~~ 119 (204)
T 3sq6_A 103 -QLALVNSSGHVQYLPSI 119 (204)
T ss_dssp -CEEEEETTSEEEECCEE
T ss_pred -cEEEEEeCCEEEEecCe
Confidence 16899999999997664
No 22
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.88 E-value=8.4e-23 Score=162.89 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=87.8
Q ss_pred eeeEEEEEecCCCc-----ceeEEEEEEEEeEEeCcCcCccCCCC-cceeeeccccccccccccceeeeccccceeecee
Q psy12705 2 SATSKLVDIGNLSF-----QQEFKVQLLLQLHWKDPRLEYRHYAP-HITEMVGERNFIQNIWTPHIYLTNERDSLVLGLY 75 (204)
Q Consensus 2 s~~~~l~~I~~vde-----~~~~~~~~~l~~~W~D~rL~w~~~~~-~~~~i~~~~~~~~~iW~Pdi~~~N~~~~~~~~~~ 75 (204)
+.++++.+|.+||| +|++++++|++|+|+|+||+|||+++ +++.+.+ +.++||+||++++|++++.++...
T Consensus 37 ~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l---~~~~IW~PDi~l~N~~~~~~~~~~ 113 (230)
T 4afh_A 37 KFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEI---SPDEIWTPDIKLFNSVDLDMTLDR 113 (230)
T ss_dssp EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEE---CGGGSCCCCEEETTCSSSSCEECT
T ss_pred EEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEe---ccCCEECCcEEEEecccccccccc
Confidence 46789999999988 57899999999999999999999884 4444544 569999999999999998776432
Q ss_pred eeeeEEEEecCCeEEEEeee------------------------------------------------------------
Q psy12705 76 RRDMLVSILPDGDMLFSTRS------------------------------------------------------------ 95 (204)
Q Consensus 76 ~~~~~~~i~~~G~V~~~~r~------------------------------------------------------------ 95 (204)
+..++|++||+|.|..|+
T Consensus 114 --~~~v~v~~~G~V~~~~~~~~~s~C~mPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~~~~~n~W~l~~~~~~~~~ 191 (230)
T 4afh_A 114 --TTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQE 191 (230)
T ss_dssp --TSCEEEETTSEEEECCEEEEEEEEEEETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBCTTCCCCCCEEEEEEEEEE
T ss_pred --cceEEEEcCCEEEEecCEEEEEECCCCCCcccCCEeeccccccCceEEEEECCCCcccceeeecCcEEEEEEEEEEEE
Confidence 345889999999987654
Q ss_pred -----ccccceeEEEEEEEEechhhhhHHh
Q psy12705 96 -----RAYMYSSLTLTFILNRQYGFYLMDF 120 (204)
Q Consensus 96 -----~~~~~s~l~~~~~l~R~~~~y~~~~ 120 (204)
+++.|+.+.|++++|||+.||+.+-
T Consensus 192 ~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 192 VVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp ECCTTCSSCEEEEEEEEEEECC--------
T ss_pred EecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 1356889999999999999998763
No 23
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.87 E-value=6.4e-22 Score=155.11 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=75.4
Q ss_pred eeeEEEEEecCCCc-ceeEEEEEEEEeEEeCcCc-CccCCCCcceeeeccccccccccccceeeecc-ccceeeceeeee
Q psy12705 2 SATSKLVDIGNLSF-QQEFKVQLLLQLHWKDPRL-EYRHYAPHITEMVGERNFIQNIWTPHIYLTNE-RDSLVLGLYRRD 78 (204)
Q Consensus 2 s~~~~l~~I~~vde-~~~~~~~~~l~~~W~D~rL-~w~~~~~~~~~i~~~~~~~~~iW~Pdi~~~N~-~~~~~~~~~~~~ 78 (204)
+.++++.+|.++|| +|.+++++|++|+|+|+|| +|||++ +++.+.+ +.++||+||++++|+ +++.++..
T Consensus 28 ~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~-~i~~~~~---~~~~iW~PDi~~~N~~~~~~~~~~---- 99 (203)
T 2bj0_A 28 SLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS-SLDQVSL---PVSKMWTPDLSFYNAIAAPELLSA---- 99 (203)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS-SCSEEEE---EGGGSCCCCEEETTCSSCCEECSC----
T ss_pred EEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC-CceEEEE---chhhccCCCccccccccccccccc----
Confidence 57899999999999 9999999999999999999 999987 6555554 479999999999999 99887764
Q ss_pred eEEEEecCCeEEEEeee
Q psy12705 79 MLVSILPDGDMLFSTRS 95 (204)
Q Consensus 79 ~~~~i~~~G~V~~~~r~ 95 (204)
..++|++||+|.|..|+
T Consensus 100 ~~v~i~~~G~V~~~~~~ 116 (203)
T 2bj0_A 100 DRVVVSKDGSVIYVPSQ 116 (203)
T ss_dssp CEEEEETTSEEEECCEE
T ss_pred eEEEEeCCcEEEEecce
Confidence 56899999999987554
No 24
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.83 E-value=2.8e-23 Score=164.64 Aligned_cols=91 Identities=13% Similarity=0.254 Sum_probs=87.9
Q ss_pred hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705 113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL 191 (204)
Q Consensus 113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl 191 (204)
|.||.+++++||+++++++|++||+|+|+ |||+++|+|++|++++++..+++.+|++| ++|++|+|+..|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999998 99999999999999999999999999999 99999999999999999999
Q ss_pred HHHhheeeeeecC
Q psy12705 192 AEFAFVNTIWRYG 204 (204)
Q Consensus 192 i~~~~v~~l~~~~ 204 (204)
+++++|.++++|+
T Consensus 80 ~~tv~vln~~~r~ 92 (227)
T 1oed_A 80 IITVVVINTHHRS 92 (227)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhhhccC
Confidence 9999999888764
No 25
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.82 E-value=5.4e-23 Score=165.24 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=88.1
Q ss_pred hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705 113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL 191 (204)
Q Consensus 113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl 191 (204)
|.||++++++||+++++++|++||+|+|+ +||+++|+|++|++++++..+++.+|++| ++|++|+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999998 89999999999999999999999999999 99999999999999999999
Q ss_pred HHHhheeeeeecC
Q psy12705 192 AEFAFVNTIWRYG 204 (204)
Q Consensus 192 i~~~~v~~l~~~~ 204 (204)
+++++|.++++|+
T Consensus 80 ~~tv~Vln~~~r~ 92 (250)
T 1oed_B 80 ILSVVVLNLHHRS 92 (250)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhheeeeeccC
Confidence 9999999988775
No 26
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.82 E-value=6.6e-23 Score=165.58 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=88.3
Q ss_pred hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705 113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL 191 (204)
Q Consensus 113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl 191 (204)
|.||++++++||+++++++|++||+|+|+.|||+++|+|++|++++++..+++.+|++| ++|++|+|+.+|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996699999999999999999999999999999 99999999999999999999
Q ss_pred HHHhheeeeeecC
Q psy12705 192 AEFAFVNTIWRYG 204 (204)
Q Consensus 192 i~~~~v~~l~~~~ 204 (204)
+++++|.++++|+
T Consensus 81 ~~tv~vln~~~r~ 93 (260)
T 1oed_E 81 MNCVIVLNVSLRT 93 (260)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHhheeeeeccC
Confidence 9999998888764
No 27
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.82 E-value=1.2e-22 Score=164.00 Aligned_cols=91 Identities=13% Similarity=0.240 Sum_probs=87.9
Q ss_pred hhhhhHHhhhhhhhhhhheeeeeeecCCCCCceEEEcchhHHHHHHHhhhhhcCCCCCC-chhHHHHHHHHHHHHHHHHH
Q psy12705 113 YGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YIRSNDVWFFACTVFIFLSL 191 (204)
Q Consensus 113 ~~~y~~~~~~P~~li~~ls~~~F~l~~~~~~~R~~l~vt~lL~~~~~~~~~~~~lP~~s-~~~~i~~~~~~~~~~~~~sl 191 (204)
|.||++++++||+++++++|++||+|+|+ |||+++|+|++|++++|+..+++.+|++| ++|++|+|+..|++++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999996 89999999999999999999999999999 99999999999999999999
Q ss_pred HHHhheeeeeecC
Q psy12705 192 AEFAFVNTIWRYG 204 (204)
Q Consensus 192 i~~~~v~~l~~~~ 204 (204)
+++++|.++++|+
T Consensus 80 ~~tv~vl~~~~r~ 92 (260)
T 1oed_C 80 VNCGIVLNFHFRT 92 (260)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHheeeeeccC
Confidence 9999999998874
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.65 E-value=9e-18 Score=109.58 Aligned_cols=62 Identities=39% Similarity=0.687 Sum_probs=58.5
Q ss_pred CceEEEcchhHHHHHHHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy12705 143 PGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204 (204)
Q Consensus 143 ~~R~~l~vt~lL~~~~~~~~~~~~lP~~s~~~~i~~~~~~~~~~~~~sli~~~~v~~l~~~~ 204 (204)
++|+++|+|++|+++.+....++++|++||++++|+|+.+|++|+|++++|+++|+|+.||.
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~ 63 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999999999999999999999999999999999999998863
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=95.81 E-value=0.00044 Score=35.93 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=25.2
Q ss_pred CceEEEcchhHHHHHHHhhhhhcCCCC
Q psy12705 143 PGRTILGASTMLTFFQLGIETGSSLPN 169 (204)
Q Consensus 143 ~~R~~l~vt~lL~~~~~~~~~~~~lP~ 169 (204)
++|+++|++++|++..+....+.++|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 689999999999999999999999986
No 30
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=30.79 E-value=14 Score=20.85 Aligned_cols=10 Identities=60% Similarity=1.109 Sum_probs=8.3
Q ss_pred eEEeCcCcCc
Q psy12705 27 LHWKDPRLEY 36 (204)
Q Consensus 27 ~~W~D~rL~w 36 (204)
-+|.|||+.|
T Consensus 36 TtWe~Pr~~~ 45 (46)
T 2l4j_A 36 TSWLDPRLET 45 (46)
T ss_dssp EECSCCSSCC
T ss_pred EeCCCCCcCC
Confidence 4899999876
No 31
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=30.41 E-value=63 Score=21.01 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred ceeeeeeEEEEecCCeEEEEeeeccccc
Q psy12705 73 GLYRRDMLVSILPDGDMLFSTRSRAYMY 100 (204)
Q Consensus 73 ~~~~~~~~~~i~~~G~V~~~~r~~~~~~ 100 (204)
+....+..+.|+-||.+.|....+.|.|
T Consensus 21 GiA~s~A~V~v~qnG~~iy~~~VppGpF 48 (90)
T 3fcg_A 21 GIARTQARVEVLRDGYTVSNELVPSGPF 48 (90)
T ss_dssp EEESSSEEEEEESSSCEEEEEEECSEEE
T ss_pred EEEcCCcEEEEEECCEEEEEeEeCCCCe
Confidence 4445577889999999999988855543
No 32
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=24.92 E-value=16 Score=19.49 Aligned_cols=8 Identities=63% Similarity=1.315 Sum_probs=6.3
Q ss_pred eEEeCcCc
Q psy12705 27 LHWKDPRL 34 (204)
Q Consensus 27 ~~W~D~rL 34 (204)
-+|.||||
T Consensus 31 ttW~~Prl 38 (38)
T 2law_A 31 TSWLDPRL 38 (38)
T ss_dssp EESSCTTC
T ss_pred EeCCCCCC
Confidence 47888886
Done!