RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12705
(204 letters)
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 130 bits (329), Expect = 3e-37
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
+S +T+ R +YL F P L++ SW FW+ ++ R + MLT
Sbjct: 188 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 245
Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
T + LP + Y D A IF ++ F + G
Sbjct: 246 AFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG 290
Score = 62.0 bits (151), Expect = 7e-12
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 7 LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITE-MVGERNFIQNIWTPHIYLT 64
+ I ++ +Q +KV + W + P I E ER +W P +
Sbjct: 20 INKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFI 79
Query: 65 NERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
N S + + + PDG ++++ R
Sbjct: 80 NVVGS----PDTGNKRLMLFPDGRVIYNAR 105
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 120 bits (302), Expect = 4e-33
Identities = 51/105 (48%), Positives = 62/105 (59%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
YS L T L R++ FYL+ Y PS +LV +SWVSFW A+P R LG +T+LT
Sbjct: 200 YSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQ 259
Query: 160 GIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
S LP VSYI++ DVW AC FIF +L EFA VN I G
Sbjct: 260 SAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAG 304
Score = 64.8 bits (158), Expect = 9e-13
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 7 LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTN 65
L I + E+ QL L+ W D RL Y + V IW P + N
Sbjct: 36 LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVI-LTVGHQIWMPDTFFPN 94
Query: 66 ERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
E+ + + + ++L+ I DG +L+S R
Sbjct: 95 EKQAYKHTIDKPNVLIRIHNDGTVLYSVR 123
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 118 bits (297), Expect = 2e-32
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 98 YMYSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML--T 155
+ S L ++RQY Y+ + P + ++ ISW +FW + L ST++
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHI 240
Query: 156 FFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIWRY 203
F + +E + LP Y+ F +F F+++ E + +
Sbjct: 241 AFNILVE--TCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVE 286
Score = 50.3 bits (121), Expect = 7e-08
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 17 QEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYR 76
+ FKV L L WKD RL + + + IW P I N ++
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVRSGVRVK---TYEPEAIWIPEIRFVNVENARD----A 91
Query: 77 RDMLVSILPDGDMLFSTR 94
+ +S+ PDG + + R
Sbjct: 92 DVVDISVSPDGTVQYLER 109
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 74.5 bits (183), Expect = 3e-18
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 142 VPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFVNTIW 201
+P R LG +T+LT + +SLP VSY+++ D+W C +F+F +L E+A VN +
Sbjct: 1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVS 60
Query: 202 R 202
R
Sbjct: 61 R 61
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 62.0 bits (151), Expect = 2e-12
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 7 LVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTN 65
L++ +L + FKV L L WKD RL + + + + IW P I N
Sbjct: 24 LIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRV---KTYEPEAIWIPEIRFVN 80
Query: 66 ERDSLVLGLYRRDMLVSILPDGDMLFSTR 94
++ + +S+ PDG + + R
Sbjct: 81 VENA----RDADVVDISVSPDGTVQYLER 105
Score = 29.6 bits (67), Expect = 0.56
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 98 YMYSSLTLTFILNRQYGFYL 117
+ S L ++RQ G +
Sbjct: 179 RLESKLDYQLRISRQGGHHH 198
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 51.0 bits (122), Expect = 6e-08
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
+ + I+ R+ FY+++ AP +L+ + + +++ A + L S +L
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+P S + + + V
Sbjct: 258 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIV 296
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 47.5 bits (113), Expect = 7e-07
Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
Y +T FI+ R +++++ P +L ++ + F++ D+ + L S +L+
Sbjct: 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVF 256
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ +P+ S + T +F+ S+ V
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVV 295
Score = 27.1 bits (60), Expect = 4.2
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 16 QQEFKVQLLLQLHWKDPRL-----EYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSL 70
Q + + L+ W D RL +Y I ++ R ++W P + L N D
Sbjct: 47 NQIVETNVRLRQQWIDVRLRWNPADY----GGIKKI---RLPSDDVWLPDLVLYNNADGD 99
Query: 71 VLGLYRRDMLVSILPDGDMLFS 92
++ +L+ G ++++
Sbjct: 100 FAIVHMTKLLLD--YTGKIMWT 119
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 46.8 bits (111), Expect = 1e-06
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
Y +T I+ R+ FY+++F P +L+ ++ ++F++ ++ + +L
Sbjct: 197 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVF 255
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ T LP + + + + V
Sbjct: 256 LLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIV 294
Score = 26.8 bits (59), Expect = 5.7
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 16 QQEFKVQLLLQLHWKDPRL-----EYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSL 70
+ + + W D RL EY I+ + R + IW P I L N D
Sbjct: 49 DETLTTNVWMDHAWYDHRLTWNASEY----SDISIL---RLRPELIWIPDIVLQNNNDGQ 101
Query: 71 VLGLYRRDMLVSILPDGDMLF 91
Y ++LV P+G + +
Sbjct: 102 YNVAYFCNVLVR--PNGYVTW 120
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 46.8 bits (111), Expect = 1e-06
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
Y +T I+ R+ FY++ P IL+ ++ + F++ PDA + L S +L
Sbjct: 195 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVF 253
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ +P S + + + + S+ V
Sbjct: 254 LLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVV 292
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 44.7 bits (105), Expect = 7e-06
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
+ + I+ R+ FY+++ AP +L+ + + +++ A + L S +L
Sbjct: 205 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 264
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+P S + + + V
Sbjct: 265 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIV 303
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 41.1 bits (96), Expect = 1e-04
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML--TFF 157
Y +T FI+ R +++++ P +L ++ + F++ D+ + L S +L T F
Sbjct: 222 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVF 280
Query: 158 QLGI-----ETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAFV 197
L I T S++P + + +F+ S+ V
Sbjct: 281 LLVIVELIPSTSSAVPLIG------KYMLFTMIFVISSIIVTVVV 319
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 39.4 bits (92), Expect = 2e-04
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
+L R+ FY ++ P +L+ ++ + F++ D + L S +L
Sbjct: 15 TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVF 73
Query: 160 GIETGSSLP----NVSYIRSNDVWFFACTVFIFLSLAEFAFV 197
+ +P +V + + V + S+ V
Sbjct: 74 LLLISKIVPPTSLDVPLV---GKYLMFTMVLVTFSIVTSVCV 112
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 40.5 bits (94), Expect = 2e-04
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
Y +T I+ R+ FY+++F P +L+ ++ ++F++ ++ + +L
Sbjct: 233 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMSTAICVLLAQAVF 291
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ T LP + + + + V
Sbjct: 292 LLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIV 330
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 39.7 bits (92), Expect = 3e-04
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQL 159
Y +T I+ R+ FY++ P IL+ ++ + F++ PDA + L S +L
Sbjct: 228 YEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVF 286
Query: 160 GIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ +P S + + + + S+ V
Sbjct: 287 LLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVV 325
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 37.2 bits (86), Expect = 8e-04
Identities = 12/105 (11%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 100 YSSLTLTFILNRQYG------FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTM 153
L+++ G +++++ P ++ + F++ D+ + S +
Sbjct: 30 SVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVL 88
Query: 154 LTFFQLGIETGSSLPNVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ + + +P+ S + T F+ S+ V
Sbjct: 89 KSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEV 133
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 32.5 bits (73), Expect = 0.063
Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIR 174
+++++ P +L ++ + F++ D+ + L S +L+ + +P+ S
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 175 SNDVWFFACT-VFIFLSLAEFAFV 197
+ T +F+ S+ V
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVV 85
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 31.7 bits (72), Expect = 0.068
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 109 LNRQYGFYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLP 168
FY ++ P +L+ C++ + F++ + + L S +L+ + +P
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIP 61
Query: 169 NVSYIRSNDVWFFACT-VFIFLSLAEFAFV 197
+ S + + + T +F+ LS+ FV
Sbjct: 62 STSSVSPSIGEYLLFTMIFVTLSIVITVFV 91
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 32.2 bits (72), Expect = 0.074
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTML--TFFQLGI-----ETGSSL 167
FY+++ AP +L+ + + +++ A + L S +L T F I ET ++
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 168 PNVSYIRSNDVWFFACTVFIFLSLAEFAFV 197
P + + L + V
Sbjct: 63 PLIG------KYLIFVMFVSMLIVMNCVIV 86
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 31.4 bits (70), Expect = 0.17
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIR 174
FY++ P IL+ ++ + F++ PDA + L S +L + +P S
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 175 SNDVWFFACT-VFIFLSLAEFAFV 197
+ + + + S+ V
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVV 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.21
Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 52/172 (30%)
Query: 29 WKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSLVLGLYRRDM-LVSILPDG 87
+++ R Y+ Y + + I+ + ++ + + ++ L +
Sbjct: 170 FEELRDLYQTYHVLVGD------LIKFS-AETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 88 DMLFSTRSRAYMYS---SLTLTFILNRQYGFYLMDF----YAPSILL------------- 127
+T + Y+ S S L ++ Q Y++ + P L
Sbjct: 223 S---NTPDKDYLLSIPISCPLIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 128 ---VCI----SWVSFWMAPDAVPGRTILGASTMLTF-FQLGIETGSSLPNVS 171
V I SW SF+++ +T F +G+ + PN S
Sbjct: 278 VTAVAIAETDSWESFFVS-----------VRKAITVLFFIGVRCYEAYPNTS 318
Score = 28.5 bits (63), Expect = 1.7
Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 36/114 (31%)
Query: 10 IGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVG----ERNFIQ------NIWTP 59
IG + + + L +D LE P + M+ + +Q N P
Sbjct: 306 IG-VRCYEAYPNTSLPPSILEDS-LENNEGVP--SPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 60 -----HIYLTNERDSLVL-G----LYRRDMLVSIL-----PDGD----MLFSTR 94
I L N +LV+ G LY L L P G + FS R
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYG---LNLTLRKAKAPSGLDQSRIPFSER 412
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 31.0 bits (69), Expect = 0.21
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIR 174
FY+++F P +L+ ++ ++F++ ++ + S +L + T LP +
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 175 SNDVWFFACT-VFIFLSLAEFAFV 197
+ + + V
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIV 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.38
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 28/94 (29%)
Query: 7 LVDIGNLSFQQEFKVQLLLQLHWKDPRLEY------------------RHYAPHITE--- 45
L +I + F+ + L + + ++ + + Y P+I +
Sbjct: 481 LKNIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 46 ----MVGE-RNFIQNIWTPHIYLTNERDSLVLGL 74
+V +F+ I ++ + D L + L
Sbjct: 540 KYERLVNAILDFLPKI-EENLICSKYTDLLRIAL 572
>1bcp_A Pertussis toxin; ADP-ribosyltransferase, transferase, whooping
cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP:
d.166.1.1 PDB: 1pto_A* 1prt_A
Length = 235
Score = 29.6 bits (65), Expect = 0.54
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 136 WMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
++A +P I + + G T + N Y+
Sbjct: 130 YLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQ 170
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex,
transcription factor, transcriptional activation, zinc
finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A*
1tqe_P 1n6j_A
Length = 90
Score = 28.2 bits (63), Expect = 0.68
Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 73 GLYRRDMLVSILPDGD---MLFSTRSRAYMYSSLTLTFILNR 111
GL ++ +S+L D + ++F++ ++ + Y+S + +L +
Sbjct: 26 GLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box
transcription factor, DNA/protein complex,
transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP:
d.88.1.1 PDB: 1c7u_A 3mu6_A*
Length = 77
Score = 27.7 bits (62), Expect = 0.71
Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 73 GLYRRDMLVSILPDGD---MLFSTRSRAYMYSSLTLTFILNR 111
GL ++ +S+L D + ++F++ ++ + Y+S + +L +
Sbjct: 26 GLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.74
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 2/16 (12%)
Query: 138 APDAVPGRTILGASTM 153
A D+ P I +TM
Sbjct: 33 ADDSAPALAI--KATM 46
>1hbx_A SRF, serum response factor; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Length = 92
Score = 27.8 bits (62), Expect = 0.84
Identities = 7/45 (15%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 73 GLYRRDMLVSILPDGD---MLFSTRSRAYMYSSLTLTFILNRQYG 114
G+ ++ +S L ++ S Y +++ L ++ + G
Sbjct: 36 GIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 29.1 bits (65), Expect = 0.91
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 8 VDIGNLSFQQEFKVQLLLQLHWKDPRL-----EYRHYAPHITEMVGERNFIQNIWTPHIY 62
++ + F + +++L W D L ++ IWTP I
Sbjct: 48 IEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPP----FDFQKI---EISPDEIWTPDIK 100
Query: 63 LTNERDSLVLGLYRRDMLVSILPDGDMLFS 92
L N D + +V +G +L+
Sbjct: 101 LFNSVDLDMTLDRTTQAIVF--SNGTVLWI 128
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 28.5 bits (64), Expect = 1.1
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 16 QQEFKVQLLLQLHWKDPRL-----EYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDSL 70
Q + L+ W D L +Y + ++ + IW P + L N D
Sbjct: 48 NQIVTTNVRLKQQWVDYNLKWNPDDY----GGVKKI---HIPSEKIWRPDVVLYNNADGD 100
Query: 71 VLGLYRRDMLVSILPDGDMLFS 92
+ +L+ G + ++
Sbjct: 101 FAIVKFTKVLLD--YTGHITWT 120
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription
factor, combinatorial gene regulation, ETS proteins,
MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Length = 103
Score = 27.5 bits (61), Expect = 1.3
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 73 GLYRRDMLVSILPDGD---MLFSTRSRAYMYSSLTLTFILNRQYGFYL 117
G+ ++ +S L ++ S Y +++ L ++ + G L
Sbjct: 35 GIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL 82
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 27.4 bits (61), Expect = 2.3
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 16 QQEFKVQLLLQLHWKDPRL----EYRHYAPHITEMVGERNFIQNIWTPHIYLTNERDS 69
+ + +V L Q WK P + ++ + +WTP + N +
Sbjct: 43 KDQVEVVLWTQASWKVPYYSSLLSS----SSLDQV---SLPVSKMWTPDLSFYNAIAA 93
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 27.5 bits (61), Expect = 2.7
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 16 QQEFKVQLLLQLHWKDPRL-----EYRHYAPHITEMVGERNFIQNIWTPHIYLTNERD 68
E + Q WK L EY +IT+ R +IWTP I +
Sbjct: 56 TNEVDLVYYEQQRWKLNSLMWDPNEY----GNITDF---RTSAADIWTPDITAYSSTR 106
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 135 FWMAPDAVP--GR---TILGASTMLTFFQLGIETGSSLPNVSYIRSNDV 178
+ P+A+ G I +L +++ PN+ S+
Sbjct: 233 QQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWF 281
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.447
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,102,283
Number of extensions: 167762
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 50
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)