RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12705
(204 letters)
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 67.2 bits (163), Expect = 3e-14
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
FY+++ AP +L+ + + +++ A + L S +L +P S +
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
+ L + V +
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCVIVLNVSLRT 93
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 63.2 bits (153), Expect = 4e-13
Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
+++++ P +L ++ + F++ D+ + L S +L+ + +P+ S +
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
+ +F+ S+ V
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRS 92
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 60.9 bits (147), Expect = 4e-12
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
FY++ P IL+ ++ + F++ PDA + L S +L + +P S +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
+ + + S+ V +
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRS 92
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 60.6 bits (146), Expect = 6e-12
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 115 FYLMDFYAPSILLVCISWVSFWMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVS-YI 173
FY+++F P +L+ ++ ++F++ ++ + S +L + T LP + +
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 174 RSNDVWFFACTVFIFLSLAEFAFVNTIWRYG 204
+ + + V
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRT 92
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 32.4 bits (73), Expect = 0.020
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 6 KLVDIGNLS-FQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQNIWTPHIYLT 64
K ++I ++ E V Q W D L + I ++W P +
Sbjct: 35 KFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQ----VSVPISSLWVPDLAAY 90
Query: 65 NERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYMYSSLTLTFILNRQYGFYLMDF 120
N + L ++ DG++L+ S ++ + +
Sbjct: 91 NAISKPEVLTP---QLARVVSDGEVLYM--PSIRQRFSCDVSGVDTESGATCRIKI 141
>d1prta_ d.166.1.1 (A:) Pertussis toxin, S1 subunit {Bordetella
pertussis [TaxId: 520]}
Length = 234
Score = 28.8 bits (64), Expect = 0.40
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 136 WMAPDAVPGRTILGASTMLTFFQLGIETGSSLPNVSYIRSN 176
++A +P I + + G T + N Y+
Sbjct: 129 YLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQ 169
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha
chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Length = 202
Score = 28.1 bits (62), Expect = 0.66
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 32 PRLEYRHYAPHITEMVGERNFIQNIWTPHIY-----LTNERDSLVLGLY---RRDMLVSI 83
P + APHI+ ++ R + T +Y N +D ++ + RR LV+
Sbjct: 117 PGRKGSTQAPHISLIIFARGINIGLHT-RVYFDDEAEANAKDPVLNSIEWATRRQTLVAK 175
Query: 84 LPDGD 88
+ D
Sbjct: 176 REERD 180
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 2.0
Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 14/162 (8%)
Query: 45 EMVGERNFIQNIWTPHI-----YLTNERDSLVLGLYRRDMLVSILPDGDMLFSTRSRAYM 99
E++ E N +Q + P+I E LV+ + L L + +
Sbjct: 54 ELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELV 113
Query: 100 YSSLTLTFILNRQYGFYLMDFYAPSILL-----VCISWVSFWMAPDAVPGRTILGASTML 154
+ L F D A ++LL IS A A
Sbjct: 114 HQVSMGMKYLEES-NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKW 172
Query: 155 TFFQLGIETGSSLPNVSYIRSNDVWFFACTVFIFLSLAEFAF 196
E + + +DVW F ++ S + +
Sbjct: 173 PVKWYAPEC---INYYKFSSKSDVWSFGVLMWEAFSYGQKPY 211
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor
complex p62 subunit (BTF2-p62), N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 25.1 bits (55), Expect = 3.7
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 4 TSKLVDIGNLSFQQEFKVQLLLQLHWKDPRLEYRHYAPHITEMVGERNFIQ 54
+ DI E K ++ LQL + + + V ER+ ++
Sbjct: 44 SHMYADIKCQKISPEGKAKIQLQLVLHAGD-TTNFHFSNESTAVKERDAVK 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.447
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,361
Number of extensions: 32879
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 21
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)