Query psy12707
Match_columns 245
No_of_seqs 160 out of 1387
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 17:37:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2872 Predicted metal-depend 100.0 9.9E-60 2.1E-64 395.5 22.3 228 3-242 4-240 (241)
2 TIGR03683 A-tRNA_syn_arch alan 100.0 1.5E-56 3.3E-61 437.2 27.2 230 3-243 503-741 (902)
3 PRK13902 alaS alanyl-tRNA synt 100.0 3.5E-56 7.5E-61 434.6 27.0 230 3-243 499-737 (900)
4 TIGR00344 alaS alanine--tRNA l 100.0 9.9E-54 2.2E-58 416.3 26.8 233 3-243 454-702 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 1.2E-53 2.7E-58 417.1 26.8 228 12-243 453-695 (865)
6 PLN02900 alanyl-tRNA synthetas 100.0 3.9E-53 8.5E-58 413.5 27.7 226 14-243 499-742 (936)
7 PLN02961 alanine-tRNA ligase 100.0 4.2E-53 9.1E-58 356.8 23.0 197 30-235 2-222 (223)
8 COG0013 AlaS Alanyl-tRNA synth 100.0 1.8E-51 3.9E-56 392.9 25.2 235 3-243 459-709 (879)
9 KOG2105|consensus 100.0 1.9E-48 4.1E-53 327.4 17.0 237 2-243 12-252 (415)
10 KOG0188|consensus 100.0 3.9E-41 8.4E-46 311.1 16.3 226 12-242 470-715 (895)
11 PRK01584 alanyl-tRNA synthetas 100.0 3.7E-29 8.1E-34 234.0 14.5 142 91-236 449-592 (594)
12 PLN02837 threonine-tRNA ligase 99.9 1.1E-22 2.4E-27 194.2 15.1 157 80-238 29-199 (614)
13 PRK12305 thrS threonyl-tRNA sy 99.9 1.1E-21 2.4E-26 186.7 14.0 144 94-239 6-159 (575)
14 PRK00413 thrS threonyl-tRNA sy 99.8 2.2E-20 4.8E-25 179.8 15.3 170 66-240 41-225 (638)
15 PRK12444 threonyl-tRNA synthet 99.8 2.5E-19 5.5E-24 172.3 15.6 159 75-237 53-226 (639)
16 PLN02908 threonyl-tRNA synthet 99.8 1.5E-18 3.3E-23 167.8 16.5 170 65-238 91-274 (686)
17 TIGR00418 thrS threonyl-tRNA s 99.7 4.7E-17 1E-21 154.7 11.7 138 98-237 1-151 (563)
18 COG0441 ThrS Threonyl-tRNA syn 99.7 2.6E-16 5.7E-21 147.8 9.7 141 92-237 24-171 (589)
19 PF07973 tRNA_SAD: Threonyl an 99.6 2.3E-16 5E-21 99.1 4.4 44 188-233 1-44 (44)
20 PF01411 tRNA-synt_2c: tRNA sy 99.6 1.5E-15 3.3E-20 143.2 9.8 62 30-91 484-552 (552)
21 smart00863 tRNA_SAD Threonyl a 99.5 4.9E-14 1.1E-18 88.7 4.1 44 188-233 1-44 (44)
22 PRK14799 thrS threonyl-tRNA sy 98.4 1.8E-06 4E-11 81.7 10.8 94 114-237 23-119 (545)
23 KOG1637|consensus 97.7 1.5E-05 3.3E-10 72.5 1.6 36 96-131 68-103 (560)
24 COG1854 LuxS LuxS protein invo 79.2 6.4 0.00014 31.2 5.6 59 95-155 50-112 (161)
25 PF02664 LuxS: S-Ribosylhomocy 78.0 8.3 0.00018 30.7 6.0 62 93-157 47-114 (157)
26 PRK02260 S-ribosylhomocysteina 71.6 13 0.00028 29.7 5.6 59 93-154 48-111 (158)
27 PF06338 ComK: ComK protein; 45.6 60 0.0013 25.7 5.4 69 33-108 81-154 (162)
28 PF10750 DUF2536: Protein of u 39.0 26 0.00057 23.6 2.0 24 140-163 17-40 (68)
29 PF10642 Tom5: Mitochondrial i 33.7 81 0.0018 20.0 3.5 20 138-157 9-28 (49)
30 PF08863 YolD: YolD-like prote 24.5 1.3E+02 0.0028 20.9 3.8 29 138-166 23-51 (92)
31 cd07215 Pat17_PNPLA8_PNPLA9_li 23.2 3.5E+02 0.0076 23.9 7.1 68 86-157 246-318 (329)
32 COG4014 Uncharacterized protei 23.1 1.3E+02 0.0028 21.6 3.3 27 14-42 22-48 (97)
No 1
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=9.9e-60 Score=395.53 Aligned_cols=228 Identities=36% Similarity=0.579 Sum_probs=203.5
Q ss_pred ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEcc--c
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNK--E 76 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~--~ 76 (245)
.+|++|+|+++++|+|+++..+ .|+||+|+|||+|||||+|+|+|. ...+.++.+.+..|+|+++. .
T Consensus 4 ~ly~~D~y~~e~~~~v~~v~~~-------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~ 76 (241)
T COG2872 4 KLYYDDSYLKEFEATVVDVEDN-------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAK 76 (241)
T ss_pred ceeccccccccceEEEEEEeCC-------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCccc
Confidence 5788999999999999999843 799999999999999999999996 46677888888899999975 3
Q ss_pred cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12707 77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQ 156 (245)
Q Consensus 77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~ 156 (245)
+++|+.|.+.|||+||+++||+|||+|||++++.+.++..+.+++++++.+++||+.+. +++.+.++++++|+++.+
T Consensus 77 ~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~~~~g~~i~~d~~~iD~~~e~---~~~~~~~v~~~~ne~v~~ 153 (241)
T COG2872 77 LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALTTGFEIGEDYARIDFDGED---TEDEIEEVEALANELVKE 153 (241)
T ss_pred CCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccceeecceeccccccccccccc---chhhHHHHHHHHHHHHHc
Confidence 78999999999999999999999999999999999999888899999999999999863 678999999999999999
Q ss_pred CCceeEEEcCCCcc-ccccccc--cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707 157 GVKVWASEYQPGDP-ALKTAHT--RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL 233 (245)
Q Consensus 157 ~~~v~~~~~~~~ea-~~~~~~~--~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~ 233 (245)
|+++...+++.+|+ ....... ...|+...+.+|+|+|+|+|++|||||||+||+|||.|+|++.. +|+|+..||+
T Consensus 154 ~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e--~k~k~~~Rv~ 231 (241)
T COG2872 154 NLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTE--KKGKGNRRVY 231 (241)
T ss_pred CCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEE--EecCceEEEE
Confidence 99999999999988 3333221 13555556799999999999999999999999999999999993 5669999999
Q ss_pred EEEchhhhh
Q psy12707 234 YLLGRRLMI 242 (245)
Q Consensus 234 ~~~G~~a~~ 242 (245)
|.+|.+|..
T Consensus 232 f~~~~~~~~ 240 (241)
T COG2872 232 FTLGERASA 240 (241)
T ss_pred EEecccccC
Confidence 999999865
No 2
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=1.5e-56 Score=437.20 Aligned_cols=230 Identities=26% Similarity=0.412 Sum_probs=203.3
Q ss_pred ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE----ceEEEEEEEEeCCEEEEEEccc-c
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVHVVNKE-F 77 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i----~~~~V~~v~~~~~~i~H~~~~~-~ 77 (245)
++||+|||+++++|+|+++.+ .+|+||+|+|||+|||||+|+|+| ..++|.+|++.+|.++|+++.. +
T Consensus 503 ~l~y~~~~~~e~~a~Vl~i~~-------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~l 575 (902)
T TIGR03683 503 RLFYEDPTMREFEAKVLGVFD-------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVDGEGI 575 (902)
T ss_pred EeccccCccceEEEEEEEEEc-------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCC
Confidence 589999999999999999982 479999999999999999999999 4699999999999999999764 8
Q ss_pred CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
.+|++|.+.|||+||+.+|++|||+|||++|+++++|.++ .+.+++++.+++||+.... ++++++.+||+.+|++|.
T Consensus 576 ~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~ 654 (902)
T TIGR03683 576 KEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKR-ISEEEIKEIERLANRIVM 654 (902)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999753 3567788999999998665 999999999999999999
Q ss_pred cCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707 156 QGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL 233 (245)
Q Consensus 156 ~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~ 233 (245)
+|+||++.++++++|+. ..+....-.+.+++.||||+|+++|.++||||||.|||+||.|+|++. ++ ++|..||+
T Consensus 655 ~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~---~~i~~Gv~RIe 731 (902)
T TIGR03683 655 ENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKT---ERIQDGVERIE 731 (902)
T ss_pred hCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEE---EEecCCeEEEE
Confidence 99999999999988832 222211001234678999999999999999999999999999999999 54 48999999
Q ss_pred EEEchhhhhh
Q psy12707 234 YLLGRRLMIQ 243 (245)
Q Consensus 234 ~~~G~~a~~~ 243 (245)
|++|.+|+++
T Consensus 732 ~v~G~~A~~~ 741 (902)
T TIGR03683 732 FAAGEAALEY 741 (902)
T ss_pred EEEChHHHHH
Confidence 9999999875
No 3
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-56 Score=434.60 Aligned_cols=230 Identities=26% Similarity=0.384 Sum_probs=202.6
Q ss_pred ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEccc-c
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNKE-F 77 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~~-~ 77 (245)
++||+|||+++++|+|+++.. .+|+||+|+|||+|||||+|+|+|. .+.|.+|++.+|.++|+++.. +
T Consensus 499 ~l~y~~~~~~~~~a~Vl~i~~-------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~ 571 (900)
T PRK13902 499 KLFYEDPYMREFEAKVLGVID-------NYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLEGEPP 571 (900)
T ss_pred EeccccCccceEEEEEEEEEc-------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCC
Confidence 589999999999999999982 3799999999999999999999997 699999999999999999754 4
Q ss_pred CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
.+|++|.+.|||+||+++|++|||+|||++|+++++|.++ .+.+++++.+++||+.... ++++++.+||+.+|++|.
T Consensus 572 ~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~ 650 (900)
T PRK13902 572 KKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKR-ITREEVKEIERLANEIVM 650 (900)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999753 3567788999999998665 999999999999999999
Q ss_pred cCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707 156 QGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL 233 (245)
Q Consensus 156 ~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~ 233 (245)
+|+||++.++++++|+. ..+....-.+.+++.||||+|+|+|.++||||||.|||+||.|+|++. ++ .+|..||+
T Consensus 651 ~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~---e~i~~Gv~RIe 727 (900)
T PRK13902 651 ENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKT---ERIQDGVERLE 727 (900)
T ss_pred cCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEE---EEecCCeEEEE
Confidence 99999999999988832 222211001235678999999999999999999999999999999999 55 48889999
Q ss_pred EEEchhhhhh
Q psy12707 234 YLLGRRLMIQ 243 (245)
Q Consensus 234 ~~~G~~a~~~ 243 (245)
|++|.+|+++
T Consensus 728 ~v~G~~A~~~ 737 (900)
T PRK13902 728 FAAGDAAVEY 737 (900)
T ss_pred EEEChHHHHH
Confidence 9999999865
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=9.9e-54 Score=416.33 Aligned_cols=233 Identities=21% Similarity=0.299 Sum_probs=202.8
Q ss_pred ccccccCCCceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEE
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHV 72 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~ 72 (245)
.+||++ .+++|+|+++..++. .++.++|+||+|+|||+|||||+|+|+|. .++|.+|++.+|.++|+
T Consensus 454 ~l~Y~~---~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~ 530 (851)
T TIGR00344 454 FLGYED---LEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHF 530 (851)
T ss_pred ccceec---ccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEE
Confidence 578888 789999999984321 12367899999999999999999999994 48999999999999999
Q ss_pred E--c-cccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHH
Q psy12707 73 V--N-KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIE 147 (245)
Q Consensus 73 ~--~-~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE 147 (245)
+ . +++.+|++|.+.|||+||+.+|++|||+|||++|++++||..+ .+.+++++.+++||+.+.. ++++++.+||
T Consensus 531 ~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE 609 (851)
T TIGR00344 531 GEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA-LTREELEKIE 609 (851)
T ss_pred EEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-CCHHHHHHHH
Confidence 5 2 4788999999999999999999999999999999999998754 4557788999999998765 9999999999
Q ss_pred HHHHHHHHcCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC
Q psy12707 148 QECNNKIRQGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS 226 (245)
Q Consensus 148 ~~~n~~I~~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~ 226 (245)
+.||++|++++||...++++++|+. .... .++++|.+.||||+|+++|.++||||||+||++||.|+|++.+ +.+
T Consensus 610 ~~vNelI~~n~pV~~~~~~~eeA~~~~~~~--~~~e~y~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~--~~~ 685 (851)
T TIGR00344 610 DLVNEQILANIPIKVIFMDLDEAKAKGAFA--LFGEKYGEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKES--GIA 685 (851)
T ss_pred HHHHHHHHhCCceEEEEeCHHHHHhcchhh--hcCCCCCCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEe--Eec
Confidence 9999999999999999999988832 2221 2456677889999999999999999999999999999999992 345
Q ss_pred CCeEEEEEEEchhhhhh
Q psy12707 227 KSLCIYLYLLGRRLMIQ 243 (245)
Q Consensus 227 ~~~~Ri~~~~G~~a~~~ 243 (245)
+|..||+|++|.+|+++
T Consensus 686 ~G~~RIe~v~G~~A~~~ 702 (851)
T TIGR00344 686 AGVRRIEAVTGNAAIEY 702 (851)
T ss_pred CCeEEEEEEEcHHHHHH
Confidence 89999999999999875
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-53 Score=417.06 Aligned_cols=228 Identities=22% Similarity=0.312 Sum_probs=199.3
Q ss_pred ceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc---eEEEEEEEEe-CCEEEEEE---ccccC
Q psy12707 12 KEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG---GVEVVDVYRD-GDEAVHVV---NKEFQ 78 (245)
Q Consensus 12 ~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~---~~~V~~v~~~-~~~i~H~~---~~~~~ 78 (245)
.+++|+|+++..+.+ .++.++|+||+|+|||+|||||+|+|+|. .++|.+|++. +|.++|++ +++++
T Consensus 453 ~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~V~~v~~~~~g~i~H~~~~~~~~l~ 532 (865)
T PRK00252 453 LEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIEDGGVFEVTDTQKPPNGLIVHRGKVEEGELK 532 (865)
T ss_pred ccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEeeCcEEEEEEEEEccCCEEEEEEEeccCCCC
Confidence 578999999984311 12358899999999999999999999994 6999999997 99999998 56789
Q ss_pred CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12707 79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQ 156 (245)
Q Consensus 79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~ 156 (245)
+|++|.+.|||+||+.+|++|||+|||++|++++||..+ .+++++++++++||+.+.. ++++++.+||+.||++|++
T Consensus 533 ~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~-lt~eel~~IE~~vN~lI~~ 611 (865)
T PRK00252 533 VGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEA-LTPEELRKIEDLVNEKIRE 611 (865)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCC-CCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998754 3567788999999998665 9999999999999999999
Q ss_pred CCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707 157 GVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL 236 (245)
Q Consensus 157 ~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~ 236 (245)
++||...++++++|+...... .++++|++.||||+|++++.++||||||+||++||.|+|++.+ ..++|..||+|++
T Consensus 612 n~pV~~~~~~~~eA~~~~~~~-~~~~~y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~--~~~~g~~RI~~v~ 688 (865)
T PRK00252 612 NLPVETEEMSIEEAKKMGAMA-LFGEKYGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSES--GVAAGVRRIEAVT 688 (865)
T ss_pred CCCeEEEEeCHHHHHhCCchh-hccccCCCeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEe--eecCCeEEEEEEE
Confidence 999999999999884322211 2456678899999999999999999999999999999999992 3448889999999
Q ss_pred chhhhhh
Q psy12707 237 GRRLMIQ 243 (245)
Q Consensus 237 G~~a~~~ 243 (245)
|.+|+++
T Consensus 689 G~~A~~~ 695 (865)
T PRK00252 689 GEAALEY 695 (865)
T ss_pred CHHHHHH
Confidence 9999865
No 6
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=3.9e-53 Score=413.53 Aligned_cols=226 Identities=22% Similarity=0.341 Sum_probs=198.2
Q ss_pred eeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc-----eEEEEEEEEeCCEEEEEE---ccccCC
Q psy12707 14 YKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-----GVEVVDVYRDGDEAVHVV---NKEFQV 79 (245)
Q Consensus 14 ~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-----~~~V~~v~~~~~~i~H~~---~~~~~~ 79 (245)
++|+|+.+..+++ .++.++|+||+|+|||+|||||+|+|+|. .+.|.+|++.+|.++|++ ++++.+
T Consensus 499 ~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~ 578 (936)
T PLN02900 499 HEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTEGSVSV 578 (936)
T ss_pred cceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEEEEECCEEEEEEEeccCCCCC
Confidence 7899999974321 12368899999999999999999999994 489999999999999996 457889
Q ss_pred CCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12707 80 GELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQG 157 (245)
Q Consensus 80 g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~ 157 (245)
|++|.+.|||+||+.+|++|||+|||++|++++||..+ .+.+++++++++||+.+.. ++++++.+||+.||++|++|
T Consensus 579 G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNe~I~~n 657 (936)
T PLN02900 579 GDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP-MTPEELREVESLVNEWIGDA 657 (936)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999866 3567788999999998776 99999999999999999999
Q ss_pred CceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCc-cccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707 158 VKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGI-DNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL 235 (245)
Q Consensus 158 ~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~-~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~ 235 (245)
+||++.++++++|.. ..+.. .++++|.+.||||+|+++ |.++||||||.||++||.|+|++++ ..++|..||+|+
T Consensus 658 ~pV~~~~~~~eEA~~~~g~~~-~f~e~y~~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~--~~~~G~rRIe~v 734 (936)
T PLN02900 658 LPVEAKEMPLADAKRINGLRA-VFGEKYPDPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEE--GIAKGIRRITAV 734 (936)
T ss_pred CCeEEEEcCHHHHhhccChHh-hcCCCCCCcEEEEEECCccceeCCCCCcCCccccCceEEEEEEe--eecCCeEEEEEE
Confidence 999999999998833 33321 145667889999999998 9999999999999999999999992 344888999999
Q ss_pred Echhhhhh
Q psy12707 236 LGRRLMIQ 243 (245)
Q Consensus 236 ~G~~a~~~ 243 (245)
+|.+|+++
T Consensus 735 ~G~~A~~~ 742 (936)
T PLN02900 735 TGGAAVEA 742 (936)
T ss_pred EcHHHHHH
Confidence 99999875
No 7
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=4.2e-53 Score=356.78 Aligned_cols=197 Identities=27% Similarity=0.383 Sum_probs=164.9
Q ss_pred eeEEEecCcccccCCCCCCCCeeEEce------EEEEEEEEeCCEEEEEE--c-------cccCCCCEEEEEEchhhhHH
Q psy12707 30 EYHVRMEDTIFFPTGGGQHCDKGTLGG------VEVVDVYRDGDEAVHVV--N-------KEFQVGELLDMKIDWAHRLD 94 (245)
Q Consensus 30 ~~~i~ld~T~Fyp~gGGQ~~D~G~i~~------~~V~~v~~~~~~i~H~~--~-------~~~~~g~~v~~~iD~~~R~~ 94 (245)
.+.|+||+|+|||+|||||+|+|+|.. +.|.+|++.+|.++|++ . .+|.+|++|.+.|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 468999999999999999999999963 88999999999999996 2 35889999999999999999
Q ss_pred HHhhchHHHHHHHHHHHH-hCCC--cccccccCCceEEeeeCCCCCCCHHH----HHHHHHHHHHHHHcCCceeEEEcCC
Q psy12707 95 QTQQHTGQHLLSAVIDKM-FGYD--TESWNCGSDVCDVELATKDKDLTEAD----IAAIEQECNNKIRQGVKVWASEYQP 167 (245)
Q Consensus 95 ~~~~HTa~HlL~~al~~~-~g~~--~~~~~~~~~~~~id~~~~~~~l~~~~----l~~iE~~~n~~I~~~~~v~~~~~~~ 167 (245)
+|++|||+|||++|++++ +|.. +.+++ .++++++||... ++.++ +.+||+.+|++|++++||++.++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~-~~~~~~v~~~~~---i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~ 157 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYH-FPDGPFVEYKGK---IPQGELDSKQDELEAEANELIAEGGKVSAAVLPY 157 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCccccccccc-cCCccceeeccc---CCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCH
Confidence 999999999999999986 5532 23344 456788888643 55544 5799999999999999999999999
Q ss_pred CccccccccccCCCCC--CCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707 168 GDPALKTAHTRGLPKD--HKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL 235 (245)
Q Consensus 168 ~ea~~~~~~~~~~p~~--~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~ 235 (245)
++|+.. .....|.. ..+.+|||+|+|++.+|||||||.||+|||.|+|+++ ++++|..||+|.
T Consensus 158 ~ea~~~--~~~~~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~---~~~kg~~Rv~~~ 222 (223)
T PLN02961 158 DEAAEL--CGGSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQI---RVKKGVTRVSYT 222 (223)
T ss_pred HHHHHh--cCCcCCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEE---EecCCEEEEEEe
Confidence 888321 11112321 1467999999999999999999999999999999999 767999999986
No 8
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-51 Score=392.95 Aligned_cols=235 Identities=23% Similarity=0.329 Sum_probs=203.8
Q ss_pred ccccccCCCceeeeEEEEEEeC-CC---CCceeEEEecCcccccCCCCCCCCeeEEc-----eEEEEEEEEeC-CEEEEE
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRN-ET---RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-----GVEVVDVYRDG-DEAVHV 72 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~-~~---~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-----~~~V~~v~~~~-~~i~H~ 72 (245)
.++|++++.. +++.++..... .+ ..+..+|+||+|+|||+||||++|+|+|. .+.|.+|++.+ +.++|.
T Consensus 459 f~gY~~~~~~-~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~vH~ 537 (879)
T COG0013 459 FLGYDDLEME-FKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHK 537 (879)
T ss_pred eeecccccce-EEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCceEEEE
Confidence 4678888888 77777665533 11 12367999999999999999999999995 37899999987 899999
Q ss_pred Ecc---ccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccc--ccccCCceEEeeeCCCCCCCHHHHHHHH
Q psy12707 73 VNK---EFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES--WNCGSDVCDVELATKDKDLTEADIAAIE 147 (245)
Q Consensus 73 ~~~---~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~--~~~~~~~~~id~~~~~~~l~~~~l~~iE 147 (245)
+.. .+++|+.|.+.|||+||+++|++|||+|||++||++++|.++.+ ....++..++||+...+ +|++++++||
T Consensus 538 ~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~-it~Eel~~IE 616 (879)
T COG0013 538 GKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKA-LTAEELKEIE 616 (879)
T ss_pred EeeccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCC-CCHHHHHHHH
Confidence 853 69999999999999999999999999999999999999987643 23456789999999887 9999999999
Q ss_pred HHHHHHHHcCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC-
Q psy12707 148 QECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS- 226 (245)
Q Consensus 148 ~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~- 226 (245)
..+|++|++|+||...+++.++|+..++... +-++|++.||||+||++|+++||||||.|||+||.|||++. +..
T Consensus 617 ~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~al-fGekY~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e---~~i~ 692 (879)
T COG0013 617 RLVNEIIRENLPVKTEEMDLDEAKAKGAMAL-FGEKYGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISE---EGIA 692 (879)
T ss_pred HHHHHHHHcCCceeEEEccHHHHHHhChHhh-cCCcCCCeEEEEEECCceeeccCCcccCCccceeeEEEEEe---cccc
Confidence 9999999999999999999999954444321 55678889999999999999999999999999999999999 544
Q ss_pred CCeEEEEEEEchhhhhh
Q psy12707 227 KSLCIYLYLLGRRLMIQ 243 (245)
Q Consensus 227 ~~~~Ri~~~~G~~a~~~ 243 (245)
.|..||.+++|..|+++
T Consensus 693 aGVrRIeavtG~~a~~~ 709 (879)
T COG0013 693 AGVRRIEAVTGEAALEY 709 (879)
T ss_pred cCeEEEEEEcCHHHHHH
Confidence 99999999999999864
No 9
>KOG2105|consensus
Probab=100.00 E-value=1.9e-48 Score=327.38 Aligned_cols=237 Identities=43% Similarity=0.715 Sum_probs=219.7
Q ss_pred cccccccCCCceeeeEEEEEEeCCCCC---ceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEeCCEEEEEEccccC
Q psy12707 2 VFLCQRNCSLKEYKSKVVSCKRNETRP---TEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQ 78 (245)
Q Consensus 2 ~~~~~~d~y~~~~~a~v~~~~~~~~~~---~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~~~~i~H~~~~~~~ 78 (245)
++.||.++++..|++.|++|.+.+..+ .++.+.|..|++||+|||||+|.|++..+.|..|.+.+...-|.+..++.
T Consensus 12 ~~~~~~~~~~~dfkt~vvsc~p~~~kk~eieg~~i~lqdtiLfpegggqp~d~gf~~~v~V~~VsR~G~~A~H~~~~~ie 91 (415)
T KOG2105|consen 12 ALACQRNSFLFDFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEVSHVSRFGLHAKHHVNDYIE 91 (415)
T ss_pred ccccchhhhhhhccccccccccccCCcceeecceeeeeeeEeccCCCCCCCccccccceeEEEeeccccchhhccCCCCC
Confidence 468999999999999999999765332 38999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707 79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV 158 (245)
Q Consensus 79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~ 158 (245)
||..|.+.+||++|+++|++||++||+.+++.++|..++++|.+|.-...++++.+. ++.+++..||+.+|+.|..-+
T Consensus 92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~sa~e~~~~~--mTaeqvaaieqsvNe~I~d~~ 169 (415)
T KOG2105|consen 92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSVNEKIRDRL 169 (415)
T ss_pred CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeeccceeeccccCCCC--ccHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999877778888876 999999999999999999999
Q ss_pred ceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC-CCeEEEEEEEc
Q psy12707 159 KVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS-KSLCIYLYLLG 237 (245)
Q Consensus 159 ~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~-~~~~Ri~~~~G 237 (245)
|+.+.+++.++.+.+....+.+|++..+.+|+|.|+|+|+++||||||+||++|+.|+|++. +++ ++++...|..|
T Consensus 170 ~~~v~E~sl~d~eVeqVS~~~~~D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgt---ekg~k~rtN~~f~~G 246 (415)
T KOG2105|consen 170 PVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGT---EKGKKNRTNLIFLSG 246 (415)
T ss_pred chheeecccCCcchhhccCCCCcccccCceEEEeecCccCCccccccccchhhcceEEEeec---cccccCccceEEEec
Confidence 99999999988877767777788888899999999999999999999999999999999999 877 77788999999
Q ss_pred hhhhhh
Q psy12707 238 RRLMIQ 243 (245)
Q Consensus 238 ~~a~~~ 243 (245)
+|++.|
T Consensus 247 nRV~~~ 252 (415)
T KOG2105|consen 247 NRVLKW 252 (415)
T ss_pred cHHHHH
Confidence 999887
No 10
>KOG0188|consensus
Probab=100.00 E-value=3.9e-41 Score=311.15 Aligned_cols=226 Identities=21% Similarity=0.359 Sum_probs=190.7
Q ss_pred ceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc-------eEEEEEEEEeCCEEEEEEc--cc
Q psy12707 12 KEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-------GVEVVDVYRDGDEAVHVVN--KE 76 (245)
Q Consensus 12 ~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-------~~~V~~v~~~~~~i~H~~~--~~ 76 (245)
..++++|+.+..++. .++...|+||+|.||+|.|||.+|+|.|. .++|..++. +|.|+|.+. ++
T Consensus 470 ~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l~~~ 548 (895)
T KOG0188|consen 470 GVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVLEGD 548 (895)
T ss_pred ccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeeeccc
Confidence 356677777764321 23588999999999999999999999995 244555554 799999874 57
Q ss_pred cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHh-CCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMF-GYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~-g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
+.+|++|.+.+|.+||..+|++|||+|||++||++++ +....+....|+.+++||+.... ++.++++.+|+.||++|.
T Consensus 549 l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~-lt~eql~~vE~~~ne~I~ 627 (895)
T KOG0188|consen 549 LSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGA-LTKEQLKKVEDKINEFIQ 627 (895)
T ss_pred cccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCC-CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998 33334556678999999998877 999999999999999999
Q ss_pred cCCceeEEEcCCCcc-ccccccccCCCCCCCCCeEEEEECC---ccccCCCCCccCCccCcccEEEEeeeccccCCCeEE
Q psy12707 156 QGVKVWASEYQPGDP-ALKTAHTRGLPKDHKGSIRIVHIDG---IDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI 231 (245)
Q Consensus 156 ~~~~v~~~~~~~~ea-~~~~~~~~~~p~~~~~~vRiv~i~~---~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~R 231 (245)
++.+|....++.++| +..+++.. +.|.|+++||||.+|. +++++|||||+.|||+|+.|.|++.+ .-.+|.+|
T Consensus 628 ~~~~V~~~e~~l~~ak~i~glr~v-~~E~YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~--~iakgirR 704 (895)
T KOG0188|consen 628 KNAPVYAKELPLAEAKKIPGLRAV-FDEVYPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEE--GIAKGIRR 704 (895)
T ss_pred cCCceEEEecCHHHHhcCCCcccc-cCCccCCceEEEEeccccccceeecCCcccccccccceEEEechh--hhhhceeE
Confidence 999999999999988 44544432 4567899999999974 67899999999999999999999982 44499999
Q ss_pred EEEEEchhhhh
Q psy12707 232 YLYLLGRRLMI 242 (245)
Q Consensus 232 i~~~~G~~a~~ 242 (245)
|..++|+.|.+
T Consensus 705 ivavTG~eA~~ 715 (895)
T KOG0188|consen 705 IVAVTGKEAQE 715 (895)
T ss_pred EEEeccHHHHH
Confidence 99999999864
No 11
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.96 E-value=3.7e-29 Score=234.03 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=121.9
Q ss_pred hhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCC
Q psy12707 91 HRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPG 168 (245)
Q Consensus 91 ~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ 168 (245)
+|+.+|++|||+|||++|++++||..+ .+.+++++++|+||+.+.+ ++++++++||+.||++|++++||...+++++
T Consensus 449 ~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~-it~edL~~IE~~vNeiI~~n~pV~~~~~s~e 527 (594)
T PRK01584 449 HSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK-MTDDEIKKVEDIVNLQIKNDLSVKKEVMSLE 527 (594)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence 466899999999999999999998753 3456778899999998765 9999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707 169 DPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL 236 (245)
Q Consensus 169 ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~ 236 (245)
+|+..... ..++++|.+.||||+|+++|.++||||||.||++||.|+|++.+ ++++|..||+++.
T Consensus 528 EA~~~~~~-~lf~e~y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~--s~g~GvrRI~av~ 592 (594)
T PRK01584 528 EAREKGAM-ALFGEKYEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQ--SSSSGVRRIRAIL 592 (594)
T ss_pred HHHhcchh-hhccccCCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEecc--cccCCeEEEEEEe
Confidence 98332111 12455678889999999999999999999999999999999983 5669999999875
No 12
>PLN02837 threonine-tRNA ligase
Probab=99.89 E-value=1.1e-22 Score=194.23 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=126.1
Q ss_pred CCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc-ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707 80 GELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT-ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV 158 (245)
Q Consensus 80 g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~-~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~ 158 (245)
...|.+..|...|...+.+|||+|||++|+.++||... ...+..++++|+||+.. . ++++++.+||++||++|.+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~~-~-lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDME-P-LTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecCC-C-CCHHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999999999997532 22233457899999973 4 999999999999999999999
Q ss_pred ceeEEEcCCCccccc------cccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCc--ccEEEEeeec-----ccc
Q psy12707 159 KVWASEYQPGDPALK------TAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQL--QSIKLLKTTR-----AQK 225 (245)
Q Consensus 159 ~v~~~~~~~~ea~~~------~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI--~~~kI~~~~~-----~~~ 225 (245)
||+..++++++|... ..+...++....+.||+|+|||...++|+||||+|||+| +.|+|++++. +++
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~ 186 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEK 186 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhccccc
Confidence 999999999998321 011111121113569999999844788999999999999 9999999973 566
Q ss_pred CCCeEEEEEEEch
Q psy12707 226 SKSLCIYLYLLGR 238 (245)
Q Consensus 226 ~~~~~Ri~~~~G~ 238 (245)
...++||++++=.
T Consensus 187 ~~~l~ri~g~~~~ 199 (614)
T PLN02837 187 NQMLQRIYGTAWE 199 (614)
T ss_pred CcceEEEEEEecC
Confidence 6889999998743
No 13
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=1.1e-21 Score=186.65 Aligned_cols=144 Identities=16% Similarity=0.182 Sum_probs=113.9
Q ss_pred HHHhhchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-c
Q psy12707 94 DQTQQHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP-A 171 (245)
Q Consensus 94 ~~~~~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~ 171 (245)
..+.+|||+|||++|+.++||.. ....+..++++|+||+.+.. ++++++.+||+.||++|++++||....+++++| +
T Consensus 6 ~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~-it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~ 84 (575)
T PRK12305 6 LEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP-FTPEDLKKIEKKMKKIIKRGLPFEREEVSREEARE 84 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 34789999999999999999743 22334456889999998655 999999999999999999999999999999998 3
Q ss_pred ccc---ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEchh
Q psy12707 172 LKT---AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLGRR 239 (245)
Q Consensus 172 ~~~---~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G~~ 239 (245)
... .+...+.....+.||+|+||++ .++|+||||+|||+||.|+|++++. ++++++++||++++=..
T Consensus 85 ~f~~~~~k~~l~~~~~~~~vri~~ig~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~ 159 (575)
T PRK12305 85 EFANEPYKLELIDDIPEEGITIYDNGDF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWET 159 (575)
T ss_pred hCCcChhHHHhhhhcCCCeEEEEEECCE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCC
Confidence 211 1110011111346999999997 5889999999999999999999852 56779999999987443
No 14
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.84 E-value=2.2e-20 Score=179.80 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=132.8
Q ss_pred CCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHH
Q psy12707 66 GDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIA 144 (245)
Q Consensus 66 ~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~ 144 (245)
+|.++ -+..++..+..|+..-....+-..+.+|||+|||+.|+.++||.. ....+..++++|+||+.+.. ++++++.
T Consensus 41 ng~l~-dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~-lt~e~l~ 118 (638)
T PRK00413 41 NGELV-DLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP-FTPEDLE 118 (638)
T ss_pred CCEEe-eCCccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC-CCHHHHH
Confidence 44432 233456667889988888888899999999999999999999742 22223346789999997655 9999999
Q ss_pred HHHHHHHHHHHcCCceeEEEcCCCcc-ccccc-----ccc---CCCCCCCCCeEEEEECCccccCCCCCccCCccCcccE
Q psy12707 145 AIEQECNNKIRQGVKVWASEYQPGDP-ALKTA-----HTR---GLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSI 215 (245)
Q Consensus 145 ~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~~-----~~~---~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~ 215 (245)
+||+.||++|++|+||....+++++| ++..- +.. ..|. .+.+|+|+++++ .++|+||||+|||+|+.|
T Consensus 119 ~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~--~~~v~iy~~~~~-~d~c~G~hv~~Tg~i~~f 195 (638)
T PRK00413 119 AIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPE--DEEISLYRQGEF-VDLCRGPHVPSTGKIKAF 195 (638)
T ss_pred HHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCC--CCeEEEEEECCE-EEECCCCCCCcccCCcee
Confidence 99999999999999999999999998 32110 000 1121 237999999997 689999999999999999
Q ss_pred EEEeeec-----cccCCCeEEEEEEEchhh
Q psy12707 216 KLLKTTR-----AQKSKSLCIYLYLLGRRL 240 (245)
Q Consensus 216 kI~~~~~-----~~~~~~~~Ri~~~~G~~a 240 (245)
+|.+.+. ++++++++||++++=...
T Consensus 196 ~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~ 225 (638)
T PRK00413 196 KLLKVAGAYWRGDSKNKMLQRIYGTAFADK 225 (638)
T ss_pred EEEEEcceEEcCCCcchheEEEEeeecCCH
Confidence 9999852 566799999999875543
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=2.5e-19 Score=172.34 Aligned_cols=159 Identities=13% Similarity=0.203 Sum_probs=120.7
Q ss_pred cccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccc-ccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHH
Q psy12707 75 KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES-WNCGSDVCDVELATKDKDLTEADIAAIEQECNNK 153 (245)
Q Consensus 75 ~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~-~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~ 153 (245)
.++..+..|+..--...--..+.+||++|||+.|+.++||..... .+..++++|+||+.... ++++++.+||+.||++
T Consensus 53 ~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~-it~edl~~Ie~~m~ei 131 (639)
T PRK12444 53 RNLEEDAEVEIITIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSS-VNVEDLRKIEKEMKKI 131 (639)
T ss_pred cccCCCCeEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence 345545555544323333446789999999999999999863221 23346789999998755 9999999999999999
Q ss_pred HHcCCceeEEEcCCCcc-cccc-----cc--c-cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec--
Q psy12707 154 IRQGVKVWASEYQPGDP-ALKT-----AH--T-RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-- 222 (245)
Q Consensus 154 I~~~~~v~~~~~~~~ea-~~~~-----~~--~-~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-- 222 (245)
|.+++||....+++++| ++.. .+ . ...|. ...||+|+|+++ .+.|+||||+|||+|+.|+|++.+.
T Consensus 132 I~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~--~~~v~iy~~~~~-~D~c~G~hv~sTg~ik~f~l~~~~~g~ 208 (639)
T PRK12444 132 INENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPS--GESITLYKQGEF-VDLCRGPHLPSTGYLKAFQLTHVSGAY 208 (639)
T ss_pred HhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCC--CCeEEEEEECCE-EEEcCCcCCCCCCCCceeEEEEEcceE
Confidence 99999999999999998 3211 11 0 01121 246999999996 6889999999999999999999863
Q ss_pred ---cccCCCeEEEEEEEc
Q psy12707 223 ---AQKSKSLCIYLYLLG 237 (245)
Q Consensus 223 ---~~~~~~~~Ri~~~~G 237 (245)
++++++++||+++|=
T Consensus 209 ~~g~~~~~~l~Ri~g~a~ 226 (639)
T PRK12444 209 WRGDSNNQVLQRIYGVAF 226 (639)
T ss_pred EcCCCCCcceEEEEEEec
Confidence 566689999999873
No 16
>PLN02908 threonyl-tRNA synthetase
Probab=99.80 E-value=1.5e-18 Score=167.78 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=124.6
Q ss_pred eCCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcc-cccccC-CceEEeeeCCCCCCCHHH
Q psy12707 65 DGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTE-SWNCGS-DVCDVELATKDKDLTEAD 142 (245)
Q Consensus 65 ~~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~-~~~~~~-~~~~id~~~~~~~l~~~~ 142 (245)
.+|.+|- +..++..+.+|++.=-....-.-+.+||++|||..|++++||.... +.++++ +++|+||......+++++
T Consensus 91 Vng~l~d-L~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ed 169 (686)
T PLN02908 91 VDGVLWD-MTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEED 169 (686)
T ss_pred ECCEEee-cCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHH
Confidence 4565543 2334554445554322223455688999999999999999976433 334444 688999885422299999
Q ss_pred HHHHHHHHHHHHHcCCceeEEEcCCCcc-ccc---cccc---cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccE
Q psy12707 143 IAAIEQECNNKIRQGVKVWASEYQPGDP-ALK---TAHT---RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSI 215 (245)
Q Consensus 143 l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~---~~~~---~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~ 215 (245)
+..||+.|+++|++++||+...+++++| ++. .++. ..+|+ ...+++++||++ .+.|.||||+|||+|+.|
T Consensus 170 l~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~--~~~v~vY~~g~~-~D~c~Gphv~sTg~ik~f 246 (686)
T PLN02908 170 FKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE--DATITVYRCGPL-VDLCRGPHIPNTSFVKAF 246 (686)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC--CCeeEEEEECCE-EEecCCCCCCCCCcccee
Confidence 9999999999999999999999999998 321 1111 11332 246999999997 688999999999999999
Q ss_pred EEEeeec-----cccCCCeEEEEEEEch
Q psy12707 216 KLLKTTR-----AQKSKSLCIYLYLLGR 238 (245)
Q Consensus 216 kI~~~~~-----~~~~~~~~Ri~~~~G~ 238 (245)
+|++++. +.+...++||++++=+
T Consensus 247 ~l~~~~~~~~lg~~~~~~lqRi~G~sfp 274 (686)
T PLN02908 247 ACLKASSAYWRGDVDRESLQRVYGISFP 274 (686)
T ss_pred EEEEecceEEcCCCcchhhEEEeeeccC
Confidence 9999862 4455789999998743
No 17
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.71 E-value=4.7e-17 Score=154.68 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=108.8
Q ss_pred hchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-ccccc
Q psy12707 98 QHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKTA 175 (245)
Q Consensus 98 ~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~~ 175 (245)
+|||+|||.+|++++|+.. ....+.-++++|+||+.... ++++++.+||+.||++|.+++|+....+++++| +...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~-~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~- 78 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRS-FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK- 78 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh-
Confidence 6999999999999998743 22223335679999987655 999999999999999999999999999999998 3222
Q ss_pred cccC-----CCCC-CCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEc
Q psy12707 176 HTRG-----LPKD-HKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLG 237 (245)
Q Consensus 176 ~~~~-----~p~~-~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G 237 (245)
.... +... ....|+++.++++..+.|.||||+|||.|+.|+|.+... .+++..++||++++=
T Consensus 79 ~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~ 151 (563)
T TIGR00418 79 VLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAW 151 (563)
T ss_pred ccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccC
Confidence 1110 1111 346799999999448999999999999999999998852 455578999999763
No 18
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.6e-16 Score=147.82 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=113.9
Q ss_pred hHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-
Q psy12707 92 RLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP- 170 (245)
Q Consensus 92 R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea- 170 (245)
...-..+||++|+|+.|++++|+....+ ..-+++||+||+...+ |+++++..||+.|++++.+++++....+++++|
T Consensus 24 ~~~~~~rhs~ah~l~~av~~l~p~~~~g-p~ie~gfyyd~~~~~~-~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~ 101 (589)
T COG0441 24 EGLEIIRHSCAHVLAQAVKRLYPDVTIG-PVIEEGFYYDFDVKEP-ITPEDLLKIEKEMKEIAKENLPIEREVVSREEAR 101 (589)
T ss_pred cchhhhhhHHHHHHHHHHHHhCCCcccc-CcccceeEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHH
Confidence 5556779999999999999999873222 3445799999999877 999999999999999999999999999999888
Q ss_pred cccc-ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEc
Q psy12707 171 ALKT-AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLG 237 (245)
Q Consensus 171 ~~~~-~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G 237 (245)
+... ++...+.. .+..+.+++-+.+ .++|-||||+||+.| .|++++++. +++++.++||++++=
T Consensus 102 ~~f~~yK~~~i~~-~~~~~s~y~~~~~-~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~ 171 (589)
T COG0441 102 APFGPYKAELIDC-KGHPLSEYSQGEF-VDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF 171 (589)
T ss_pred HHhhhhHHHHHhc-CCCCceeEecCcc-ccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc
Confidence 3221 12111111 1367888988887 899999999999999 999999973 577789999999875
No 19
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.64 E-value=2.3e-16 Score=99.12 Aligned_cols=44 Identities=36% Similarity=0.614 Sum_probs=36.5
Q ss_pred eEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707 188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL 233 (245)
Q Consensus 188 vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~ 233 (245)
||+|+|++++.++||||||+||++|+.|+|++. ++++++.+|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~--~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKG--ESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEE--EEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEe--EEEcCCcEEeC
Confidence 799999999999999999999999999999977 25679999997
No 20
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=99.62 E-value=1.5e-15 Score=143.23 Aligned_cols=62 Identities=35% Similarity=0.633 Sum_probs=47.7
Q ss_pred eeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEcc---ccCCCCEEEEEEchhh
Q psy12707 30 EYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNK---EFQVGELLDMKIDWAH 91 (245)
Q Consensus 30 ~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~---~~~~g~~v~~~iD~~~ 91 (245)
..+|+||+|+|||+|||||+|+|+|. .+.|.+|++.+|.++|++.. .+.+|++|.++|||+|
T Consensus 484 ~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 484 EGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIGEVESGSLKVGDEVTAEVDWER 552 (552)
T ss_dssp TTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEESSG-GG--TTSEEEEEE-HHH
T ss_pred eEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEEeccCCCCCCCCEEEEEecCCC
Confidence 56899999999999999999999996 48999999999999999964 5999999999999987
No 21
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.47 E-value=4.9e-14 Score=88.66 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=38.5
Q ss_pred eEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707 188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL 233 (245)
Q Consensus 188 vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~ 233 (245)
+|+|.|+++|.+||+||||.||++||.|+|++.+ .++.+++||+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~--~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVS--GAYWGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEe--eeecCeEEeC
Confidence 5899999999999999999999999999999993 3346678874
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.42 E-value=1.8e-06 Score=81.75 Aligned_cols=94 Identities=9% Similarity=0.094 Sum_probs=65.6
Q ss_pred CCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEE
Q psy12707 114 GYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHI 193 (245)
Q Consensus 114 g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i 193 (245)
|......+.|+..||+|...+.. ++.++..+ +...| |.....++ .+. ++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~-~~~~~~~~------------------~~~--~~~~ 73 (545)
T PRK14799 23 GYKPVAVGLGERDFYIDVKSDTS-ITLDEVKK-------AINEN-VLANVSIE------------------NNQ--IVYK 73 (545)
T ss_pred CCCceEecccceeEEEecCCCcc-ccHHHHHH-------HHhcC-cceeeEee------------------cCc--EEEc
Confidence 44334556788899999998776 77654333 33333 22222211 122 3346
Q ss_pred CCccccCCCC-CccCCccCcccEEEEeeec--cccCCCeEEEEEEEc
Q psy12707 194 DGIDNNMCCG-THVDNISQLQSIKLLKTTR--AQKSKSLCIYLYLLG 237 (245)
Q Consensus 194 ~~~~~~~CgG-tHV~~T~eI~~~kI~~~~~--~~~~~~~~Ri~~~~G 237 (245)
|.+ +++|.| |||+||+.|+.|++++++. ++++..++|||+++=
T Consensus 74 ~~~-~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f 119 (545)
T PRK14799 74 GNK-VSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAF 119 (545)
T ss_pred cCc-eeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeec
Confidence 666 899999 9999999999999999975 667789999999873
No 23
>KOG1637|consensus
Probab=97.69 E-value=1.5e-05 Score=72.48 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=30.4
Q ss_pred HhhchHHHHHHHHHHHHhCCCcccccccCCceEEee
Q psy12707 96 TQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVEL 131 (245)
Q Consensus 96 ~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~ 131 (245)
..|||++|+|..|+++.+|+..+-.+...++||+|+
T Consensus 68 vfwhssahvlg~a~e~~~g~~lc~Gpp~~~gf~yd~ 103 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHLCIGPPIEEGFYYDM 103 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeEeeCCCCcCceehhh
Confidence 579999999999999999987665555567899988
No 24
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=79.23 E-value=6.4 Score=31.17 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHhhchHHHHHHHHHHHHhCC--Ccccc-cccC-CceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 95 QTQQHTGQHLLSAVIDKMFGY--DTESW-NCGS-DVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 95 ~~~~HTa~HlL~~al~~~~g~--~~~~~-~~~~-~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
..-.||..||++..++..... .+.-+ ++|. .|||.-+.... =+.+-+..+++.++++..
T Consensus 50 ~~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGCrTGFYm~l~G~~--~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 50 PAGIHTLEHLLAGFIRNHLNGNVEIIDISPMGCRTGFYMILIGTP--TSQDIADVLEATMKDVLK 112 (161)
T ss_pred ccchhhHHHHHHHHHHhcccCceeEEEecCcccccceEEEEECCC--CHHHHHHHHHHHHHHHHc
Confidence 356899999999999985543 12222 3443 47887776542 334556778888888765
No 25
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=78.04 E-value=8.3 Score=30.68 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHhhchHHHHHHHHHHHHhCC---Ccccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHHHcC
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGY---DTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKIRQG 157 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~---~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I~~~ 157 (245)
......||..||++..+++...+ .+..+ .+|. .|||+-+... .+.++ +..+++.++.++...
T Consensus 47 m~~~~lHTlEHL~A~~lRn~~~~~~~~iI~~gPMGCrTGFYli~~g~---~~~~~i~~l~~~~l~~i~~~~ 114 (157)
T PF02664_consen 47 MDTAALHTLEHLFATYLRNHLDGDKDKIIDFGPMGCRTGFYLILWGD---PSSEDIADLLKETLEFILEFE 114 (157)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE-TTSSEEEEEEESS-----HHHHHHHHHHHHHHHHT-S
T ss_pred CCCcchhHHHHHHHHHHhcCccCCCCeEEEecCcccccccEEEEeCC---CCHHHHHHHHHHHHHHHHhcC
Confidence 44568999999999999987654 23333 4554 4788766543 55554 567777777776543
No 26
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=71.58 E-value=13 Score=29.71 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHhhchHHHHHHHHHHHHhCC--Ccccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHH
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGY--DTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKI 154 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~--~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I 154 (245)
......||..||++..+++.... .+..+ ++|. .|||+-+... .+.++ +..+++.+..+.
T Consensus 48 m~~~alHTlEHL~At~lRn~~~~~~~iI~~sPMGCrTGFYli~~g~---~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 48 MPTAGIHTLEHLLAGFLRNHLDGGVEIIDISPMGCRTGFYLILIGT---PDEEDVADALKATLEDVL 111 (158)
T ss_pred CCCcchhHHHHHHHHHHhhCccCCceEEEECCCccccccEEEEeCC---CCHHHHHHHHHHHHHHHH
Confidence 34457999999999999984433 23333 3444 3777766542 55554 555666666664
No 27
>PF06338 ComK: ComK protein; InterPro: IPR010461 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family consists of several bacterial ComK proteins. ComK of Bacillus subtilis is a positive autoregulatory protein occupying a central position in the competence-signal-transduction network. It positively regulates the transcription of late competence genes, which specify morphogenetic and structural proteins necessary for construction of the DNA-binding and uptake apparatus, as well as the transcription of comK itself [,]. ComK specifically binds to the promoters of the genes that it affects. It has been found that ClpX plays an important role in the regulation of ComK at the post-transcriptional level [].
Probab=45.60 E-value=60 Score=25.68 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=50.6
Q ss_pred EEec---CcccccCCCCCCCCeeEEceEEEEEEEEeCC--EEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHH
Q psy12707 33 VRME---DTIFFPTGGGQHCDKGTLGGVEVVDVYRDGD--EAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSA 107 (245)
Q Consensus 33 i~ld---~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~~~--~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~ 107 (245)
|+++ .++|||...=--.|.+||+-..|.++...++ ..+++.+ | ..+.||...+...-+++-|+.|...
T Consensus 81 I~i~~~~~~~~FPt~s~~~~~c~Win~~~I~~i~~~~~~~t~I~F~n-----g--~~l~l~~s~~~~~~q~~~a~~l~~~ 153 (162)
T PF06338_consen 81 IVIDPSNNIIFFPTKSPRSPDCIWINAHHIKDIQPIKNNKTIITFKN-----G--QSLILDVSYRSFEKQLQRAAMLRYR 153 (162)
T ss_pred EEEcCCCCEEEEEccCCCCCCcEEEcHHHhhhhhhcCCCceEEEEeC-----C--eEEEEecCHHHHHHHHHHHHHHHHH
Confidence 5555 6899999876778999999888888776542 4577643 4 5577788888888888877776554
Q ss_pred H
Q psy12707 108 V 108 (245)
Q Consensus 108 a 108 (245)
.
T Consensus 154 ~ 154 (162)
T PF06338_consen 154 M 154 (162)
T ss_pred H
Confidence 4
No 28
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=39.02 E-value=26 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEE
Q psy12707 140 EADIAAIEQECNNKIRQGVKVWAS 163 (245)
Q Consensus 140 ~~~l~~iE~~~n~~I~~~~~v~~~ 163 (245)
..+++.+|+.+|+.|..|-++-..
T Consensus 17 A~~l~~LEkkIneqIe~NkailL~ 40 (68)
T PF10750_consen 17 ANDLQTLEKKINEQIEHNKAILLE 40 (68)
T ss_pred cchHHHHHHHHHHHHhcCceEEEE
Confidence 467999999999999988765443
No 29
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=33.70 E-value=81 Score=19.97 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHHHHcC
Q psy12707 138 LTEADIAAIEQECNNKIRQG 157 (245)
Q Consensus 138 l~~~~l~~iE~~~n~~I~~~ 157 (245)
+|+++++..|+..+.-+..-
T Consensus 9 pS~eE~k~~e~~A~~Tvk~a 28 (49)
T PF10642_consen 9 PSEEEIKAAEAQANFTVKNA 28 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887653
No 30
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=24.49 E-value=1.3e+02 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHHcCCceeEEEcC
Q psy12707 138 LTEADIAAIEQECNNKIRQGVKVWASEYQ 166 (245)
Q Consensus 138 l~~~~l~~iE~~~n~~I~~~~~v~~~~~~ 166 (245)
++++++..++..+.+.+..+.+|.+.++.
T Consensus 23 Lde~~leei~~~l~~a~~~~~~v~ity~~ 51 (92)
T PF08863_consen 23 LDEQQLEEINEKLSEAYQENQPVTITYYE 51 (92)
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 89999999999999999999999988875
No 31
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.24 E-value=3.5e+02 Score=23.89 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=45.5
Q ss_pred EEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCC-----CCCHHHHHHHHHHHHHHHHcC
Q psy12707 86 KIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDK-----DLTEADIAAIEQECNNKIRQG 157 (245)
Q Consensus 86 ~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~-----~l~~~~l~~iE~~~n~~I~~~ 157 (245)
.++|..+..-+.+.++.+.....+.++++.. .....+++++...+.. +-+++.++.+.+..++.+.++
T Consensus 246 ~~~W~~~l~~~~~~~~~~~~d~~~~~l~~~~----~~~~~Y~Ri~~~l~~~~~~lD~a~~~~i~~L~~~~~~~~~~~ 318 (329)
T cd07215 246 LLGWAKPLIDIMMDGASQTVDYQLKQIFDAE----GDQQQYLRIQPELEDADPEMDDASPENLEKLREVGQALAEDH 318 (329)
T ss_pred cccchHHHHHHHHhhhHHHHHHHHHHHHhhc----CCCCceEEEeCCCCCCccccccCCHHHHHHHHHHHHHHHHHh
Confidence 4677777777777888888888888877521 1123456666654321 134677888888888888765
No 32
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.08 E-value=1.3e+02 Score=21.62 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=18.5
Q ss_pred eeeEEEEEEeCCCCCceeEEEecCccccc
Q psy12707 14 YKSKVVSCKRNETRPTEYHVRMEDTIFFP 42 (245)
Q Consensus 14 ~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp 42 (245)
...+|+++...+ ++..||+||.|-++-
T Consensus 22 TvgrV~dIkkdE--dG~~WV~LdstdLwY 48 (97)
T COG4014 22 TVGRVVDIKKDE--DGDIWVVLDSTDLWY 48 (97)
T ss_pred ceeeEEEEEeec--CCceEEEEecCCcee
Confidence 446677777442 346799999987765
Done!