Query psy12707
Match_columns 245
No_of_seqs 160 out of 1387
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 17:38:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kew_A DHHA1 domain protein; s 100.0 2.7E-69 9.3E-74 458.6 26.7 232 1-243 1-234 (241)
2 2e1b_A PH0108, 216AA long hypo 100.0 2.2E-61 7.5E-66 404.2 19.3 204 2-236 6-215 (216)
3 2zze_A Alanyl-tRNA synthetase; 100.0 4.1E-55 1.4E-59 416.7 24.6 225 3-238 518-752 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-53 7E-58 404.9 24.1 225 3-239 506-739 (739)
5 1v4p_A Alanyl-tRNA synthetase; 100.0 1.2E-29 4.1E-34 202.1 15.2 142 94-238 4-152 (157)
6 1tke_A Threonyl-tRNA synthetas 100.0 5.8E-30 2E-34 215.2 12.5 167 64-236 39-222 (224)
7 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.4E-24 4.7E-29 207.3 14.4 167 64-236 39-222 (642)
8 1nyr_A Threonyl-tRNA synthetas 99.9 1.2E-24 4.3E-29 208.0 13.3 169 64-239 41-224 (645)
9 1vje_A Autoinducer-2 productio 74.5 6.9 0.00024 30.3 5.9 59 93-155 51-112 (166)
10 1j6w_A Autoinducer-2 productio 67.3 12 0.0004 29.3 5.8 60 93-155 48-113 (175)
11 1j98_A Autoinducer-2 productio 67.2 16 0.00055 28.0 6.4 59 93-154 48-113 (157)
12 1j6x_A Autoinducer-2 productio 67.1 18 0.00061 27.8 6.6 58 93-154 49-109 (160)
13 1xg8_A Hypothetical protein SA 37.8 38 0.0013 24.1 3.9 44 104-157 34-77 (111)
14 2atz_A H. pylori predicted cod 30.7 1.6E+02 0.0056 22.6 6.6 86 77-169 65-153 (180)
No 1
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.7e-69 Score=458.62 Aligned_cols=232 Identities=34% Similarity=0.541 Sum_probs=211.7
Q ss_pred Cc--ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEeCCEEEEEEccccC
Q psy12707 1 MV--FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQ 78 (245)
Q Consensus 1 ~~--~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~~~~i~H~~~~~~~ 78 (245)
|| +|||+|||+++++|+|++|.+.+ +.++|+||+|+|||+|||||+|+|+|.+++|.+|++.+|.++|++++++.
T Consensus 1 mT~~~ly~~d~y~~~~~a~V~~~~~~~---~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~V~~v~~~~g~i~H~~~~~l~ 77 (241)
T 3kew_A 1 MSLTKLYYEDQYIKEFKGEIIEVKEID---GKFHVLLDQTAFFPGGGGQMGDLGLIDGIKVLDVYEEEGKVYHVLEKEPK 77 (241)
T ss_dssp --CEEGGGTCTTCCEEEECEEEEEEET---TEEEEEESEECCCCCBTTBCCCCEEETTEEEEEEEEETTEEEEEESSCCC
T ss_pred CcchhhhhhCcccceeEEEEEEEEecC---CeEEEEEeCCcccCCCCCCCCCEEEEeeEEEEEEEEeCCEEEEEECCcCC
Confidence 66 99999999999999999998653 36899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707 79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV 158 (245)
Q Consensus 79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~ 158 (245)
+|++|.+.|||+||+++|++|||+|||++|++++||..+.+++++++++|+||+ . . ++++++++||+.||++|++|+
T Consensus 78 ~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~~~G~~v~~~~~r~Df~-~-~-lt~e~l~~IE~~vn~~I~~~~ 154 (241)
T 3kew_A 78 KLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTVDIV-G-F-LDEKTIREAEKEANRLIFENL 154 (241)
T ss_dssp CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSSCEEEEEE-S-C-CCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCCeEeccccCCeEEEEEC-C-C-CCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999987788888899999999 3 3 999999999999999999999
Q ss_pred ceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEEch
Q psy12707 159 KVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGR 238 (245)
Q Consensus 159 ~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~G~ 238 (245)
||+..++++++|.... .+.+|+++.+.||+|+||++|.++||||||+|||+||.|+|+++ ++.++..||+|++|.
T Consensus 155 pV~~~~~~~~eA~~~~--~~~~~e~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~---~~~~~~~RI~~~~G~ 229 (241)
T 3kew_A 155 EVKSYAPSKKELKKVK--TRRALPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRW---EKHKNATRIEYVAGN 229 (241)
T ss_dssp BEEEECCCTTTTTTCC--CSSCCCCCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEE---EEETTEEEEEEEEGG
T ss_pred CEEEEEcCHHHHHhcC--hhhcCCccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEE---eccCCcEEEEEEECH
Confidence 9999999999984332 23357778889999999999999999999999999999999999 667888999999999
Q ss_pred hhhhh
Q psy12707 239 RLMIQ 243 (245)
Q Consensus 239 ~a~~~ 243 (245)
+|++.
T Consensus 230 ~a~~~ 234 (241)
T 3kew_A 230 RAVSE 234 (241)
T ss_dssp GGC--
T ss_pred HHHhc
Confidence 99864
No 2
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=2.2e-61 Score=404.15 Aligned_cols=204 Identities=31% Similarity=0.480 Sum_probs=185.9
Q ss_pred cccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEe-CCEEEEEEcc--ccC
Q psy12707 2 VFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRD-GDEAVHVVNK--EFQ 78 (245)
Q Consensus 2 ~~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~-~~~i~H~~~~--~~~ 78 (245)
.++||+|||+++++|+|++|.+ .+|+||+|+|||+|||||+|+|+|.+++|.+|++. +|.++|+++. +++
T Consensus 6 ~~ly~~d~y~~~~~a~V~~~~~-------~~vvld~T~Fype~GGQ~~D~G~i~~~~V~~v~~~~~~~i~H~~~~~~~l~ 78 (216)
T 2e1b_A 6 RKLYYEDAYLKEAKGRVLEIRD-------NAILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEGNVWHVVKEPEKFK 78 (216)
T ss_dssp CCSTTSCTTCCEEEECBCCCCS-------SCCCBSCCCSCCCCTTCCCCCEEETTEEEEEEECCTTCCCEEEESCGGGCC
T ss_pred HHHHhhCcccceeeEEEEEEeC-------CEEEEeCCCccCCCCCCCCCEEEEccEEEEEEEECcCCEEEEEEccCCCcC
Confidence 3789999999999999999952 27999999999999999999999988999999997 8999999864 688
Q ss_pred CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCC---CcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGY---DTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~---~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
+|++|.+.|||++|+++|++|||+|||++|++++||. .+.+++++++++|+||+.+.+ ++++ +++||+.||++|+
T Consensus 79 ~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~-lt~e-l~~IE~~vn~~I~ 156 (216)
T 2e1b_A 79 VGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKY-KEQIISLFNKYVD 156 (216)
T ss_dssp SSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GGGG-HHHHHHHHHHHHH
T ss_pred CCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC-CCHH-HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997 666778889999999998765 8886 9999999999999
Q ss_pred cCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707 156 QGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL 235 (245)
Q Consensus 156 ~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~ 235 (245)
+++||...+++ .+|+|+||++|.+|||||||+||++||.|+|++++ .+++|..||+|.
T Consensus 157 ~~~pv~~~~~~--------------------~vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~--~~~~g~rRi~~~ 214 (216)
T 2e1b_A 157 EGGEVKIWWEG--------------------DRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRS--SIGRGKQRLEMW 214 (216)
T ss_dssp HCCBEEEEESS--------------------SCEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEE--EEETTEEEEEEE
T ss_pred cCCCEEEEEcC--------------------CEEEEEECCEEEECCCCCCcccHhhCceEEEEEEe--EEcCCEEEEEEE
Confidence 99999988754 18999999999999999999999999999999993 344889999997
Q ss_pred E
Q psy12707 236 L 236 (245)
Q Consensus 236 ~ 236 (245)
.
T Consensus 215 l 215 (216)
T 2e1b_A 215 L 215 (216)
T ss_dssp E
T ss_pred E
Confidence 4
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=4.1e-55 Score=416.69 Aligned_cols=225 Identities=23% Similarity=0.384 Sum_probs=197.6
Q ss_pred ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE--ce--EEEEEEEEeCCEEEEEEcc--c
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL--GG--VEVVDVYRDGDEAVHVVNK--E 76 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i--~~--~~V~~v~~~~~~i~H~~~~--~ 76 (245)
.+||++||+++++|+|+++. ..+|+||+|+|||+|||||+|+|+| .+ +.|.+|++.+|.++|+++. +
T Consensus 518 ~l~Y~~~yl~~~~a~Vl~i~-------~~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~ 590 (752)
T 2zze_A 518 RLYYEDPFMXEFDAXVLRVI-------XDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGA 590 (752)
T ss_dssp EHHHHCTTCCEEEEEEEEEE-------TTEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESCGGG
T ss_pred eecccCCccceEEEEEEEEE-------cCEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccccCc
Confidence 57899999999999999998 3479999999999999999999999 55 8999999999999999863 5
Q ss_pred cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHH
Q psy12707 77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKI 154 (245)
Q Consensus 77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I 154 (245)
+.+|++|.+.|||+||+.+|++|||+|||++|++++||... .+.+++++++|+||+.+.. ++++++.+||+.||++|
T Consensus 591 l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~-lt~edL~~IE~~vNeiI 669 (752)
T 2zze_A 591 FXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR-ISEEELXEIEMLANRIV 669 (752)
T ss_dssp CCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-CCHHHHHHHHHHHHHHH
T ss_pred cCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-CCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999753 3445678899999998766 99999999999999999
Q ss_pred HcCCceeEEEcCCCccc-cccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEE
Q psy12707 155 RQGVKVWASEYQPGDPA-LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIY 232 (245)
Q Consensus 155 ~~~~~v~~~~~~~~ea~-~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri 232 (245)
++++||...++++++|. ...+..-.-.+.|.+.||||+||++|.++||||||+|||+||.|+|+++ ++ ++|..||
T Consensus 670 ~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~---s~i~~GvrRI 746 (752)
T 2zze_A 670 MEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRT---ERIQDGVERI 746 (752)
T ss_dssp HHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEE---EEEETTEEEE
T ss_pred HhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEE---EEEcCCEEEE
Confidence 99999999999998883 2222110002345678999999999999999999999999999999999 54 4899999
Q ss_pred EEEEch
Q psy12707 233 LYLLGR 238 (245)
Q Consensus 233 ~~~~G~ 238 (245)
++++|.
T Consensus 747 eavtG~ 752 (752)
T 2zze_A 747 IFACGE 752 (752)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999994
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2e-53 Score=404.94 Aligned_cols=225 Identities=22% Similarity=0.304 Sum_probs=196.3
Q ss_pred ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE--ce--EEEEEEEEeCCEEEEEEcccc-
Q psy12707 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL--GG--VEVVDVYRDGDEAVHVVNKEF- 77 (245)
Q Consensus 3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i--~~--~~V~~v~~~~~~i~H~~~~~~- 77 (245)
.+||++||+++++|+|+++. ..+|+||+|+|||+|||||+|+|+| .+ +.|.+|++.+|.++|++++++
T Consensus 506 ~l~Y~~~y~~~~~a~Vl~i~-------~~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~ 578 (739)
T 2ztg_A 506 KLYYDDPTLLEFEAEVIGVE-------GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVKGAKP 578 (739)
T ss_dssp ECTTTCTTCCEEEEEEEEEE-------TTEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECCSSCC
T ss_pred eecccCCcccEEEEEEEEEE-------cCEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEcccCC
Confidence 68999999999999999998 3479999999999999999999999 55 899999999999999998777
Q ss_pred CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcc--cccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707 78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTE--SWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR 155 (245)
Q Consensus 78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~--~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~ 155 (245)
.+|++|.+.|||+||+.+|++|||+|||++|++++||..+. +..++++++|+||+.+.. ++++++.+||+.||++|+
T Consensus 579 ~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~-lT~edL~~IE~~vNeiI~ 657 (739)
T 2ztg_A 579 EVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRR-PSEEEIKEIEMLANREIL 657 (739)
T ss_dssp CTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSC-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997532 345567899999997665 999999999999999999
Q ss_pred cCCceeEEEcCCCcc-ccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707 156 QGVKVWASEYQPGDP-ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL 233 (245)
Q Consensus 156 ~~~~v~~~~~~~~ea-~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~ 233 (245)
+++||...+++.++| +...+....-...+.+.||||+||+ +.++||||||+|||+||.|+|++. ++ ++|..||+
T Consensus 658 ~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~fkIls~---s~i~~GvrRIe 733 (739)
T 2ztg_A 658 ANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGMLKILKV---ESIQDGVIRFE 733 (739)
T ss_dssp TTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCEEEEEE---EEEETTEEEEE
T ss_pred cCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcEEEEEE---eEEcCCEEEEE
Confidence 999999999999988 3222222100122457899999999 799999999999999999999999 54 48999999
Q ss_pred EEEchh
Q psy12707 234 YLLGRR 239 (245)
Q Consensus 234 ~~~G~~ 239 (245)
+++|.+
T Consensus 734 avtG~~ 739 (739)
T 2ztg_A 734 FAAGEA 739 (739)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999963
No 5
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.97 E-value=1.2e-29 Score=202.07 Aligned_cols=142 Identities=19% Similarity=0.245 Sum_probs=113.7
Q ss_pred HHHhhchHHHHHHHHHHHHhC--CCcc-cccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc
Q psy12707 94 DQTQQHTGQHLLSAVIDKMFG--YDTE-SWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170 (245)
Q Consensus 94 ~~~~~HTa~HlL~~al~~~~g--~~~~-~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea 170 (245)
..|++|||+|||++|++++|| .... +++++++++|+||+.+.. ++++++.+||+.||++|++|+||...++++++|
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA 82 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 579999999999999999998 3322 334555578888886555 999999999999999999999999999999988
Q ss_pred -cccc---ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEEch
Q psy12707 171 -ALKT---AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGR 238 (245)
Q Consensus 171 -~~~~---~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~G~ 238 (245)
+... +..+.+|+. .+.||+|+||++|.++||||||+|||+||.|+|++...+ +.++..||+|.++.
T Consensus 83 ~~~f~~~~~~~~~~~~~-~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~~-~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPED-VRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFR-KSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHGGGGSCSSCCCTT-CCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEE-TTTTEEEEEEEEC-
T ss_pred HHhhCccccccccCCCC-CCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEec-CCCcEEEEEEEEee
Confidence 3221 122223432 257999999999999999999999999999999998432 45788999998874
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.96 E-value=5.8e-30 Score=215.18 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=135.0
Q ss_pred EeCCEEEEEEccccCCCCEEEEEEchhhh-HHHHhhchHHHHHHHHHHHHhCC-CcccccccCCceEEeeeCCCCCCCHH
Q psy12707 64 RDGDEAVHVVNKEFQVGELLDMKIDWAHR-LDQTQQHTGQHLLSAVIDKMFGY-DTESWNCGSDVCDVELATKDKDLTEA 141 (245)
Q Consensus 64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~~R-~~~~~~HTa~HlL~~al~~~~g~-~~~~~~~~~~~~~id~~~~~~~l~~~ 141 (245)
+.+|.+++ +..++..|+.|++ |+++.+ -+.|++|||+|||++|++++||. .....+..++++|+||+.+.. ++++
T Consensus 39 kvNg~l~d-L~~~l~~~~~ve~-it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~-~t~e 115 (224)
T 1tke_A 39 RVNGELVD-ACDLIENDAQLSI-ITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQE 115 (224)
T ss_dssp EETTEEEE-TTCCBCSCEEEEE-ECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-CCHH
T ss_pred EECCEEec-cceEcCCCCeEEE-EecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCC-CCHH
Confidence 45788887 4556888888884 777766 48999999999999999999974 222223346789999997765 9999
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc-------ccc-cC-CCCCCCCCeEEEEECCccccCCCCCccCCccC
Q psy12707 142 DIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT-------AHT-RG-LPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQ 211 (245)
Q Consensus 142 ~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~-------~~~-~~-~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~e 211 (245)
++.+||++||++|++|+||+..++++++| ++.. ... .. +|. .+.||+|++|++ .++|+||||+|||+
T Consensus 116 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~--~~~v~vy~~g~~-~dlC~G~Hv~~Tg~ 192 (224)
T 1tke_A 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAH--DDKPGLYFHEEY-VDMCRGPHVPNMRF 192 (224)
T ss_dssp HHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCT--TCCCEEEEETTE-EEEESCCCCSBGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCC--CCeeEEEEeCCE-EEECCCcCCCcCcc
Confidence 99999999999999999999999999998 3211 111 01 332 467999999998 79999999999999
Q ss_pred cccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707 212 LQSIKLLKTTR-----AQKSKSLCIYLYLL 236 (245)
Q Consensus 212 I~~~kI~~~~~-----~~~~~~~~Ri~~~~ 236 (245)
||.|+|++.+. +++++.++|||+++
T Consensus 193 i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp CCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred cceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 99999999863 67778999999986
No 7
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.92 E-value=1.4e-24 Score=207.32 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=130.5
Q ss_pred EeCCEEEEEEccccCCCCEEEEEEchh-hhHHHHhhchHHHHHHHHHHHHhCC-CcccccccCCceEEeeeCCCCCCCHH
Q psy12707 64 RDGDEAVHVVNKEFQVGELLDMKIDWA-HRLDQTQQHTGQHLLSAVIDKMFGY-DTESWNCGSDVCDVELATKDKDLTEA 141 (245)
Q Consensus 64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~-~R~~~~~~HTa~HlL~~al~~~~g~-~~~~~~~~~~~~~id~~~~~~~l~~~ 141 (245)
+.+|.+++ +..++..+..|+ -|+++ .+-+.|++|||+|||++|++++||. .....+.-++++|+||+.+.+ ++++
T Consensus 39 ~vng~~~d-l~~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~-~t~e 115 (642)
T 1qf6_A 39 RVNGELVD-ACDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQE 115 (642)
T ss_dssp EETTEEEE-TTSCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEETTEEEEEEECSSC-CCHH
T ss_pred EECCEEec-cccccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCC-CCHH
Confidence 35788876 345666665665 34554 6778999999999999999999975 221122224789999998766 9999
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc-----cc--c--cCCCCCCCCCeEEEEECCccccCCCCCccCCccC
Q psy12707 142 DIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT-----AH--T--RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQ 211 (245)
Q Consensus 142 ~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~-----~~--~--~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~e 211 (245)
++.+||+.||++|++|+||...++++++| +... .+ . ..+|+. +.||+|++|++ .++|+||||+|||+
T Consensus 116 dl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~--~~v~vy~~g~~-~dlC~GpHv~~Tg~ 192 (642)
T 1qf6_A 116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHD--DKPGLYFHEEY-VDMCRGPHVPNMRF 192 (642)
T ss_dssp HHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTT--CCCEEEEETTE-EECCSSCCCSBGGG
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCC--CceEEEEECCE-EEecCCCccCCCCc
Confidence 99999999999999999999999999998 3311 11 1 123432 57999999998 79999999999999
Q ss_pred cccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707 212 LQSIKLLKTTR-----AQKSKSLCIYLYLL 236 (245)
Q Consensus 212 I~~~kI~~~~~-----~~~~~~~~Ri~~~~ 236 (245)
||.|+|++++. ++++..++|++.++
T Consensus 193 I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~ 222 (642)
T 1qf6_A 193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (642)
T ss_dssp CCSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred ceeEEEeeeccccccCccCCceeEeeeccc
Confidence 99999999863 44557788999997
No 8
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91 E-value=1.2e-24 Score=207.98 Aligned_cols=169 Identities=14% Similarity=0.266 Sum_probs=135.4
Q ss_pred EeCCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccccccc---CCceEEeeeCCCCCCCH
Q psy12707 64 RDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCG---SDVCDVELATKDKDLTE 140 (245)
Q Consensus 64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~---~~~~~id~~~~~~~l~~ 140 (245)
+.+|.+++ +..++..+.+|++.-....+...|++|||+|||++|++++||.. .+++| ++++|+||+.+.. +++
T Consensus 41 ~vng~~~d-l~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~--~~~~g~~~~~g~~~Df~~~~~-~t~ 116 (645)
T 1nyr_A 41 KFNGQLVD-LTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNV--KFGVGPVIEGGFYYDFDIDQN-ISS 116 (645)
T ss_dssp EETTEEEC-TTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSC--EECCCCEETTEEEEEEECSSC-CCS
T ss_pred EECCEEEe-CCcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCc--EEEECCccCCceEEEecCCCC-CCH
Confidence 35787776 34567767777775556667799999999999999999999753 22333 5799999997665 999
Q ss_pred HHHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc---cc---ccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcc
Q psy12707 141 ADIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT---AH---TRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQ 213 (245)
Q Consensus 141 ~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~---~~---~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~ 213 (245)
+++.+||+.||++|++|+||...++++++| +... .+ ...+|+ .+.||+|++|++ .++|+||||+|||+||
T Consensus 117 edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~--~~~vrv~~~g~~-~dlC~G~Hv~~Tg~i~ 193 (645)
T 1nyr_A 117 DDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPE--DENVTLYSQGDF-TDLCRGVHVPSTAKIK 193 (645)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSS--SCCCEEEEETTE-EEECCSCCCSCGGGCC
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCC--CCeeEEEEECCE-EEecCCcccCCCCCCc
Confidence 999999999999999999999999999998 3321 11 112343 247999999998 7999999999999999
Q ss_pred cEEEEeeec-----cccCCCeEEEEEEEchh
Q psy12707 214 SIKLLKTTR-----AQKSKSLCIYLYLLGRR 239 (245)
Q Consensus 214 ~~kI~~~~~-----~~~~~~~~Ri~~~~G~~ 239 (245)
.|+|++++. +++++.++||+.++...
T Consensus 194 ~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~ 224 (645)
T 1nyr_A 194 EFKLLSTAGAYWRGDSNNKMLQRIYGTAFFD 224 (645)
T ss_dssp EEEEEEEEEEETTSCSSSCEEEEEEEEEESS
T ss_pred eEEEeeeCchHHHHHhHHHHHHHHHHHhcCC
Confidence 999999962 56678899999998743
No 9
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=74.52 E-value=6.9 Score=30.27 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHhhchHHHHHHHHHHHHhCCCcccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHHH
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGYDTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKIR 155 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I~ 155 (245)
....-.||..||++..+++... .+..+ ++|. .|||+-+... .+.++ +..+++.++.++.
T Consensus 51 m~~~~iHTlEHL~A~~lRnh~~-~iId~sPMGCrTGFYlil~G~---~~~~~v~~~~~~~l~~Il~ 112 (166)
T 1vje_A 51 IDPAAIHTLEHLLAGYMRDHLE-GVVDVSPMGARTGMYMAVIGE---PDEQGVMKAFEAALKDTAG 112 (166)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCT-TEEEEEECTTSSEEEEEEESS---CCHHHHHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHhcCCC-CeEEECCcccccccEEEEeCC---CCHHHHHHHHHHHHHHHHh
Confidence 3446799999999999998554 34443 4554 4788766543 55554 5567777777764
No 10
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=67.32 E-value=12 Score=29.28 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=38.9
Q ss_pred HHHHhhchHHHHHHHHHHHHhCC---Ccccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHHH
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGY---DTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKIR 155 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~---~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I~ 155 (245)
....-.||..||++..+++.... .+..+ ++|. .|||+-+... .+.++ +..+++.++.++.
T Consensus 48 m~~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMGCrTGFYlil~G~---~~~~~v~~~~~~~l~~Il~ 113 (175)
T 1j6w_A 48 LSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGT---PNEQKVSEAWLASMQDVLG 113 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEESC---CCHHHHHHHHHHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHhhCccCCCCeEEEeCCcCcccccEEEEeCC---CCHHHHHHHHHHHHHHHHh
Confidence 34567999999999999986542 12333 4454 4788766543 55554 5557777777763
No 11
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=67.23 E-value=16 Score=27.97 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHhhchHHHHHHHHHHHHhCC----Ccccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHH
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGY----DTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKI 154 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~----~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I 154 (245)
....-.||..||++..+++.... .+..+ ++|. .|||+-+... .+.++ +..+++.++.+.
T Consensus 48 m~~~~iHTlEHL~A~~lRnh~~~~~~~~iId~sPMGCrTGFYl~l~G~---~~~~~v~~~~~~~l~~il 113 (157)
T 1j98_A 48 MKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGE---TTSAEIVDLLEDTMKEAV 113 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEEC---CCHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHHHHHHHHHhcCccccCCCCEEEeCCcCcccccEEEEeCC---CCHHHHHHHHHHHHHHHH
Confidence 34567999999999999986643 23333 4454 4788766543 45555 455777777765
No 12
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=67.08 E-value=18 Score=27.78 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=38.7
Q ss_pred HHHHhhchHHHHHHHHHHHHhCCCcccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHH
Q psy12707 93 LDQTQQHTGQHLLSAVIDKMFGYDTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKI 154 (245)
Q Consensus 93 ~~~~~~HTa~HlL~~al~~~~g~~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I 154 (245)
....-.||..||++..+++... .+..+ ++|. .|||+-+... .+.++ +..+++.++.+.
T Consensus 49 m~~~~iHTlEHL~A~~lRnh~~-~iId~sPMGCrTGFYlil~G~---~~~~~v~~~~~~~l~~Il 109 (160)
T 1j6x_A 49 MDMPSLHSLEHLVAEIIRNHAN-YVVDWSPMGCQTGFYLTVLNH---DNYTEILEVLEKTMQDVL 109 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCS-CEEEEEECTTSSEEEEEEESC---CCHHHHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHhhCCC-CeEEECCcCcchhcEEEEeCC---CCHHHHHHHHHHHHHHHH
Confidence 3456799999999999998553 33443 4554 4788766543 55554 555677777665
No 13
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=37.80 E-value=38 Score=24.08 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12707 104 LLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQG 157 (245)
Q Consensus 104 lL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~ 157 (245)
-|.+||.|.|+... + .--|+||..+..+++.. -++.+++++.++
T Consensus 34 WLqAal~RKyp~~~--f----~~~YIDI~~~~~~l~d~----~~~~ae~I~ede 77 (111)
T 1xg8_A 34 WLQPLLKRKYPNIS--F----KYTYIDITKDNDNLTDH----DLQFIERIEQDE 77 (111)
T ss_dssp HHHHHHHHHCTTSC--E----EEEEEETTTC---CCHH----HHHHHHHHHTTS
T ss_pred HHHHHHhCcCCCCc--e----EEEEEeccCCccchhHH----HHHHHHHHhhcc
Confidence 36788888886531 1 12489987653224432 233455555554
No 14
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=30.70 E-value=1.6e+02 Score=22.55 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=55.7
Q ss_pred cCCCCEEE-EEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc-ccc-cccCCceEEeeeCCCCCCCHHHHHHHHHHHHHH
Q psy12707 77 FQVGELLD-MKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT-ESW-NCGSDVCDVELATKDKDLTEADIAAIEQECNNK 153 (245)
Q Consensus 77 ~~~g~~v~-~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~-~~~-~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~ 153 (245)
+..|+.|+ +.+|..-|.--..+|-|++||.. -|... +.+ ...+....+=+-.+. .+-++..++-+.+...
T Consensus 65 i~~~~kveniVfdYnG~~pErF~hraqlLlRe-----eGfinftaY~tKtpghlhlyIhkgh--ttL~E~~ql~~~lS~k 137 (180)
T 2atz_A 65 ILRNDKVENIVFDYNGRNPERFYHKAQLLLRE-----EGFMNFTAYNTKTPGHLHLYVHKGH--TELGEGERLVKTLSMK 137 (180)
T ss_dssp SBTTTEESCEEEEECSSCHHHHHHHHHHHHHH-----TTCCCEEEEECSSTTCEEEEECCCS--EEHHHHHHHHHHHHHH
T ss_pred hcCCCceeEEEEEeCCCCHHHHHHHHHHHHHH-----hCcceeEeeccCCCCeEEEEEecCC--ccHHHHHHHHHHHHHH
Confidence 45677777 77899999999999999998762 23311 111 122333322222222 4567777788888888
Q ss_pred HHcCCceeEEEcCCCc
Q psy12707 154 IRQGVKVWASEYQPGD 169 (245)
Q Consensus 154 I~~~~~v~~~~~~~~e 169 (245)
.++.+|.+...+|-.+
T Consensus 138 La~klpkeWr~fPs~d 153 (180)
T 2atz_A 138 LAQGLPKEWKVFPSNE 153 (180)
T ss_dssp HHTTSCCCEEEESCTT
T ss_pred HHhhCccceeeCCCcc
Confidence 9999999988876543
Done!