RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12707
(245 letters)
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 210 bits (537), Expect = 1e-68
Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Query: 1 MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVV 60
+ L + +KE+K +++ K + ++HV ++ T FFP GGGQ D G + G++V+
Sbjct: 3 LTKLYYEDQYIKEFKGEIIEVKEIDG---KFHVLLDQTAFFPGGGGQMGDLGLIDGIKVL 59
Query: 61 DVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESW 120
DVY + + HV+ KE + + L ++DW R D QQH GQHLLS +FG +T +
Sbjct: 60 DVYEEEGKVYHVLEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGF 119
Query: 121 NCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGL 180
+ G ++ V++ L E I E+E N I + ++V Y P LK TR
Sbjct: 120 HLGKEISTVDI---VGFLDEKTIREAEKEANRLIFENLEV--KSYAPSKKELKKVKTRRA 174
Query: 181 PKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK 225
IRIV I G+D N CCG H N LQ IK+ + + +
Sbjct: 175 LPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHKN 219
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 104 bits (261), Expect = 1e-27
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 37/227 (16%)
Query: 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDV 62
L + LKE K +V+ + N + ++ TIF+PTGGGQ D+GT+ GVEV+DV
Sbjct: 7 KLYYEDAYLKEAKGRVLEIRDNA-------ILLDQTIFYPTGGGQPHDRGTINGVEVLDV 59
Query: 63 YRDGDEAVH---VVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES 119
Y+D + V ++F+VG+ +++KIDW +R + HTG HLL V++++ G
Sbjct: 60 YKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQ 119
Query: 120 WNCGSDVCDVELA----TKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTA 175
GS + VE ++L + I N + +G +V ++
Sbjct: 120 LV-GSGM-SVEKGRYDIAYPENLNK-YKEQIISLFNKYVDEGGEV-KIWWE--------- 166
Query: 176 HTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR 222
G R I + C GTHV +I ++ IK LK +
Sbjct: 167 ----------GDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS 203
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 92.7 bits (231), Expect = 8e-22
Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 38 TIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVHVVNK-EFQVGELLDMKIDWAHR 92
+ F+P GGQ D G L G EVVDV +HVV + +VG + ID R
Sbjct: 534 SAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVKGAKPEVGTKVKGVIDSDVR 593
Query: 93 LDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA----TKDKDLTEADIAAIEQ 148
+ H+ H+L + K+ G W G+ + A T + +E +I IE
Sbjct: 594 WRHMRHHSATHVLLYSLQKVLG--NHVWQAGARK-EFSKARLDVTHFRRPSEEEIKEIEM 650
Query: 149 ECNNKIRQGVKVWASE--------------YQPGDPALKTAHTRGLPKDHKGSIRIVHID 194
N +I + YQ G P P IR+V +
Sbjct: 651 LANREILANKPIKWEWMDRIEAERKFGFRLYQGGVP----------PGR---KIRVVQV- 696
Query: 195 GIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
G D C GTH + ++ +K+LK Q
Sbjct: 697 GDDVQACGGTHCRSTGEIGMLKILKVESIQ 726
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 81.7 bits (200), Expect = 6e-18
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 14/203 (6%)
Query: 33 VRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVH--VVNKEFQVGELLDMK 86
V ++ T F+P GGGQ D G L V V +V G +H F G ++
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGAFXEGMIVHGX 600
Query: 87 IDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA---TKDKDLTEADI 143
IDW R+ + HTG H+L + ++ G W GS + + ++E ++
Sbjct: 601 IDWXRRIQHMRHHTGTHVLMGALVRVLG--RHVWQAGSQLTTDWARLDISHYXRISEEEL 658
Query: 144 AAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHK--GSIRIVHIDGIDNNMC 201
IE N + + V E+ P A + R IR+V I+ D C
Sbjct: 659 XEIEMLANRIVMEDRXV-TWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQAC 717
Query: 202 CGTHVDNISQLQSIKLLKTTRAQ 224
GTH+ + + I +L+T R Q
Sbjct: 718 GGTHLPSTGLVGPIXILRTERIQ 740
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 53.0 bits (128), Expect = 4e-09
Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 99 HTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA----TKDKDLTEADIAAIEQECNNKI 154
H+ H++ + K+ G W + V D+ ++ +I IE+ N K+
Sbjct: 9 HSALHVVKGAVVKVLG-SEAKWTYSTYV-KGNKGVLIVKFDRKPSDEEIREIERLANEKV 66
Query: 155 RQGVKVWASEYQPGDPALKT----AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNIS 210
++ + P + A K + + +++V I+ + N C H
Sbjct: 67 KENAPI-KIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTG 125
Query: 211 QLQSIKLLKT 220
++ IK+ K
Sbjct: 126 EIGPIKIRKV 135
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 38.3 bits (90), Expect = 0.002
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 44/149 (29%)
Query: 99 HTGQHLLSA---------------VIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADI 143
H+ HL++ VI+ F YD + D++++ D
Sbjct: 75 HSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFD---------------IDQNISSDDF 119
Query: 144 AAIEQECNNKIRQGV----KVW----ASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDG 195
IE+ + + + KV A E D K +P+D ++ +
Sbjct: 120 EQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDE-YKLELIDAIPED--ENVTLYSQGD 176
Query: 196 -IDNNMCCGTHVDNISQLQSIKLLKTTRA 223
D +C G HV + ++++ KLL T A
Sbjct: 177 FTD--LCRGVHVPSTAKIKEFKLLSTAGA 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.007
Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 58/191 (30%)
Query: 3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYH--------VRMEDTIFFPTGGGQHCDKGTL 54
++ QR+ + Y V K N +R Y +R + G K +
Sbjct: 112 YIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWV 166
Query: 55 GGVEVVDVYRDG------DEAVHVVN--KEFQVGELLDMKIDWAHRLDQTQQHTGQH--- 103
+DV D + +N +L+M +++D H
Sbjct: 167 ----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 104 ------------------------LLSAVIDKMFGYDTESWNCGSDV-CDVELATKDKDL 138
LL V+ + + ++WN ++ C + L T+ K +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLL--VLLNV--QNAKAWN-AFNLSCKILLTTRFKQV 277
Query: 139 TEADIAAIEQE 149
T+ AA
Sbjct: 278 TDFLSAATTTH 288
Score = 29.1 bits (64), Expect = 1.6
Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 59/166 (35%)
Query: 61 DVYRD------GDEAVH--VVN-----KEFQVGELLDMKID--WAHRLDQTQQHTGQHLL 105
+Y + + A+H +V+ K F +L+ +D + H G HL
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLK 482
Query: 106 SAVIDKMFG-----------------YDTESWNCGSDVCDV--------ELATKDKDLTE 140
+ + +D+ +WN + + + E
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 141 ADIAAIEQECNNKIRQGVKVWASEY---------QPGDPALKTAHT 177
+ AI + + + S+Y + + AH
Sbjct: 543 RLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.031
Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 59/180 (32%)
Query: 26 TRP-TEYHVRMEDTIFFPTG----GGQHCDK--GTLGGVEVVDVYRDGDEAVHVVNKEFQ 78
TRP T H +E + PT Q ++ L E + + DE
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP--EPTEGFAADDEPTTPA----- 58
Query: 79 VGELLDMKIDW-AHRLDQTQQHTGQHLLSAVIDKMF--GYDTESWNCGSDVCDVELATKD 135
EL+ + + + ++ ++ +L+ + + F Y
Sbjct: 59 --ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCY-------------------- 95
Query: 136 KDLTEADI----AAIEQECNNKIRQGVKVWASEY------------QPGDPALKTAHTRG 179
L DI A + QE + + + K Y + + AL A G
Sbjct: 96 --LEGNDIHALAAKLLQENDTTLVK-TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 33.7 bits (78), Expect = 0.058
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 32/125 (25%)
Query: 108 VIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQP 167
VID F YD + D+ LT+ D+ A+E+ + + V +
Sbjct: 97 VIDNGFYYDVDL---------------DRTLTQEDVEALEKRMHELAEKNYDVIKKKV-S 140
Query: 168 GDPALKTAHTRG-----------LPKDHKGSIRI-VHIDGIDNNMCCGTHVDNISQLQSI 215
A +T RG + D + H + +D MC G HV N+
Sbjct: 141 WHEARETFANRGESYKVSILDENIAHD--DKPGLYFHEEYVD--MCRGPHVPNMRFCHHF 196
Query: 216 KLLKT 220
KL+KT
Sbjct: 197 KLMKT 201
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 32.5 bits (75), Expect = 0.092
Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 32/128 (25%)
Query: 108 VIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQP 167
VID F YD + D+ LT+ D+ A+E+ + + V +
Sbjct: 97 VIDNGFYYDVDL---------------DRTLTQEDVEALEKRMHELAEKNYDV-IKKKVS 140
Query: 168 GDPALKTAHTRG-----------LPKDHKGSIRI-VHIDGIDNNMCCGTHVDNISQLQSI 215
A +T RG + D + H + +D MC G HV N+
Sbjct: 141 WHEARETFANRGESYKVSILDENIAHD--DKPGLYFHEEYVD--MCRGPHVPNMRFCHHF 196
Query: 216 KLLKTTRA 223
KL+KT A
Sbjct: 197 KLMKTAGA 204
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function;
2.30A {Sulfolobus tokodaii}
Length = 172
Score = 31.7 bits (73), Expect = 0.11
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 42/117 (35%)
Query: 43 TGGGQHCDKGT---LGGVEV------VDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRL 93
TG G DKG EV V D DE N +G + + + + +
Sbjct: 4 TGTG---DKGKTKVPSVGEVWKDSEIVKALGDLDEL----NS--VLGVVSSLYPELSEVI 54
Query: 94 DQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQEC 150
+ Q +F + S+ +A D + ++ + IE+
Sbjct: 55 QKLQND------------IF-------SISSE-----IAGFDMNFSDEKVKGIEELI 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.21
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 147 EQECNNKIRQGVKVWASEYQPGDPAL 172
E++ K++ +K++A + PAL
Sbjct: 18 EKQALKKLQASLKLYADD---SAPAL 40
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A;
translation, ribosome, ribosomal, ribosomal R ribosomal
protein, eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L
3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Length = 146
Score = 29.6 bits (67), Expect = 0.48
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 125 DVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHT 177
DV+L + +LT+ ++ I Q N + W Q K HT
Sbjct: 48 KKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHT 100
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 152
Score = 28.8 bits (65), Expect = 1.1
Identities = 5/53 (9%), Positives = 19/53 (35%)
Query: 125 DVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHT 177
D+++ + +L+ ++ + +N + V W + + +
Sbjct: 46 KKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQV 98
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation,
xanthine, inhibition aspergillus flavus, peroxisome,
purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus
flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A*
1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A*
1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A
2ic0_A* ...
Length = 296
Score = 29.0 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 55 GGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAH 91
V V V++D V V E V LL+ +I+ ++
Sbjct: 12 DNVRVYKVHKDEKTGVQTV-YEMTVCVLLEGEIETSY 47
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_M
Length = 155
Score = 27.6 bits (62), Expect = 2.8
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 125 DVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAH 176
V ++ + LTE I + G+ W K
Sbjct: 48 KVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWLLNRINDFKDGKNYQ 99
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint
center for structural genomics, JCSG; HET: MSE CXS;
1.85A {Acidithiobacillus ferrooxidans}
Length = 162
Score = 27.4 bits (60), Expect = 3.6
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 29 TEYHVRMEDTIFFPTGGGQHC-----DK-------GTLGGVEVVDVYRDGDEAVHVVNKE 76
+Y + D + FP H + G +VVD Y + + ++ N E
Sbjct: 86 DQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVD-YPNQHKRLYRNNGE 144
Query: 77 FQVGELLDMKIDW 89
+ + ++ D+++
Sbjct: 145 WNLVDMADIRVLR 157
>1mnn_A NDT80 protein; IG fold, protein_DNA complex, transcription-DNA
complex; 1.40A {Saccharomyces cerevisiae} SCOP: b.2.5.7
PDB: 2evg_A 2euv_A 2euw_A 2etw_A 2eux_A 2evf_A 2euz_A
2evh_A 2evi_A 2evj_A 1mn4_A 1m6u_A 1m7u_A
Length = 340
Score = 27.5 bits (60), Expect = 4.9
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 76 EFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNC 122
+F+VG ++ D+ ++ T + ID+ F + E W
Sbjct: 62 QFKVGPPFELVRDYCPVVESHTGRTLDLRIIPRIDRGFDHIDEEWVG 108
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response
regulator, four helix bundle, histidine phosphotransfer
(HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP:
c.23.1.1 PDB: 1oxk_B 1oxb_B
Length = 133
Score = 26.0 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 56 GVEVVDVYRDGDEAVHVVNKEFQVGELLDM 85
G+E +++ DG EA V + GE +M
Sbjct: 26 GIENIELACDGQEAFDKVKELTSKGENYNM 55
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 26.8 bits (60), Expect = 8.0
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 57 VEVVDVYRDGDEAVHVVNK-------EFQVGELL--DMKI---DWAHRLDQTQQHTGQHL 104
+ VVD D + EF E+ I W + + + L
Sbjct: 106 IHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWD-KFAKRIKLQKIKL 164
Query: 105 LSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQEC 150
SA+ + + G + + + L ++ D+ A E
Sbjct: 165 ESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEI 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.414
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,755,519
Number of extensions: 219807
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 24
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)