RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12707
         (245 letters)



>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
          domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 87

 Score = 65.7 bits (160), Expect = 8e-15
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 3  FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDV 62
           L   +  LKE K +V+  +       +  + ++ TIF+PTGGGQ  D+GT+ GVEV+DV
Sbjct: 7  KLYYEDAYLKEAKGRVLEIR-------DNAILLDQTIFYPTGGGQPHDRGTINGVEVLDV 59

Query: 63 YRDGDEAVH---VVNKEFQVGELLDMKI 87
          Y+D +  V       ++F+VG+ +++KI
Sbjct: 60 YKDEEGNVWHVVKEPEKFKVGDEVELKI 87


>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
           domain {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 129

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 88  DWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDK--DLTEADIAA 145
           DW +R    + HTG HLL  V++++ G +      GS +   +        +        
Sbjct: 1   DWDYRYKLMRIHTGLHLLEHVLNEVLG-EGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQ 59

Query: 146 IEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTH 205
           I    N  + +G +V                        +G  R   I   +   C GTH
Sbjct: 60  IISLFNKYVDEGGEV--------------------KIWWEGDRRYTQIRDFEVIPCGGTH 99

Query: 206 VDNISQLQSIKLLKTTRAQK 225
           V +I ++  IK LK +   +
Sbjct: 100 VKDIKEIGHIKKLKRSSIGR 119


>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 151

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 99  HTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA---TKDKDLTEADIAAIEQECNNKIR 155
           H+  H++   + K+ G + + W   + V   +       D+  ++ +I  IE+  N K++
Sbjct: 9   HSALHVVKGAVVKVLGSEAK-WTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67

Query: 156 QGVKVWASEYQPGDPALKTAHTRG---LPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQL 212
           +   +   E    +                +    +++V I+  + N C   H     ++
Sbjct: 68  ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEI 127

Query: 213 QSIKLLKTTRAQKSKSLCIYLYLL 236
             IK+ K    +    L I+  LL
Sbjct: 128 GPIKIRKVRFRKSKGLLEIHFELL 151


>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus
          flavus [TaxId: 5059]}
          Length = 136

 Score = 27.4 bits (61), Expect = 0.86
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 57 VEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAH 91
          V V  V++D    V  V  E  V  LL+ +I+ ++
Sbjct: 13 VRVYKVHKDEKTGVQTV-YEMTVCVLLEGEIETSY 46


>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional
           regulator Rv1626 {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 190

 Score = 25.6 bits (55), Expect = 4.7
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 56  GVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQH 103
           G E+V    DG EAV +         ++D+K+     +D   +   + 
Sbjct: 27  GYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKR 74


>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 140

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 55  GGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAV-IDKMF 113
             +E+V    D   A  ++ K       LD+++     LD  ++      +  V +  + 
Sbjct: 27  SDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLT 86

Query: 114 GYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQP 167
           G  +E      ++  ++  TK +      + A  +    K+R   +   + ++P
Sbjct: 87  GKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKP 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,165
Number of extensions: 41922
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 8
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)