Query psy12708
Match_columns 695
No_of_seqs 131 out of 229
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 17:39:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07885 RHD-n_RelA N-terminal 100.0 4.7E-70 1E-74 520.1 17.5 166 39-217 1-169 (169)
2 cd07933 RHD-n_c-Rel N-terminal 100.0 8.5E-70 1.8E-74 519.5 17.0 166 39-217 1-172 (172)
3 cd07887 RHD-n_Dorsal_Dif N-ter 100.0 1.4E-69 2.9E-74 518.8 17.1 167 39-217 1-173 (173)
4 cd07886 RHD-n_RelB N-terminal 100.0 5.7E-68 1.2E-72 507.3 17.3 167 39-217 1-172 (172)
5 cd07934 RHD-n_NFkB2 N-terminal 100.0 1.5E-67 3.3E-72 509.2 16.4 178 39-217 1-185 (185)
6 cd07827 RHD-n N-terminal sub-d 100.0 2.5E-67 5.5E-72 504.8 16.9 170 39-217 1-174 (174)
7 cd07883 RHD-n_NFkB N-terminal 100.0 3.8E-67 8.1E-72 510.7 17.0 177 39-217 1-197 (197)
8 cd07935 RHD-n_NFkB1 N-terminal 100.0 3.5E-66 7.6E-71 504.9 16.1 175 39-217 1-202 (202)
9 PF00554 RHD: Rel homology dom 100.0 5.9E-63 1.3E-67 472.4 13.7 166 41-216 1-169 (169)
10 cd07884 RHD-n_Relish N-termina 100.0 4.1E-62 8.8E-67 462.4 15.5 151 39-217 1-159 (159)
11 cd07927 RHD-n_NFAT_like N-term 100.0 3.1E-51 6.7E-56 387.4 14.0 147 39-217 1-161 (161)
12 cd07882 RHD-n_TonEBP N-termina 100.0 6.5E-48 1.4E-52 364.9 14.3 147 40-217 2-161 (161)
13 cd01177 IPT_NFkappaB IPT domai 100.0 1.9E-44 4E-49 321.9 11.1 98 222-319 1-102 (102)
14 cd01178 IPT_NFAT IPT domain of 100.0 2.8E-38 6E-43 282.2 10.9 96 222-319 2-101 (101)
15 cd07881 RHD-n_NFAT N-terminal 100.0 1E-36 2.2E-41 288.8 12.8 153 33-217 4-174 (175)
16 cd00602 IPT_TF IPT domain of e 100.0 1.6E-36 3.4E-41 270.2 10.7 97 222-319 1-101 (101)
17 cd00102 IPT Immunoglobulin-lik 98.6 3.6E-07 7.8E-12 75.8 9.6 86 222-319 1-89 (89)
18 smart00429 IPT ig-like, plexin 98.6 4.4E-07 9.5E-12 76.5 10.2 87 221-318 1-90 (90)
19 cd01175 IPT_COE IPT domain of 97.9 4.1E-05 8.9E-10 68.0 7.3 83 222-318 1-84 (85)
20 cd00603 IPT_PCSR IPT domain of 97.2 0.0015 3.3E-08 55.3 7.7 87 222-319 1-90 (90)
21 PF01833 TIG: IPT/TIG domain; 96.4 0.0074 1.6E-07 49.3 5.8 81 222-317 1-85 (85)
22 cd01180 IPT_plexin_repeat1 Fir 95.7 0.084 1.8E-06 46.4 9.3 88 222-318 1-93 (94)
23 cd01179 IPT_plexin_repeat2 Sec 94.8 0.22 4.9E-06 42.8 8.9 83 222-318 1-84 (85)
24 cd01176 IPT_RBP-Jkappa IPT dom 94.8 0.083 1.8E-06 48.4 6.4 75 234-319 13-97 (97)
25 cd01181 IPT_plexin_repeat3 Thi 89.9 2.2 4.7E-05 38.4 8.6 90 222-319 1-99 (99)
26 cd02849 CGTase_C_term Cgtase ( 76.9 11 0.00024 33.1 7.1 78 222-317 3-81 (81)
27 cd00604 IPT_CGTD IPT domain (d 33.8 1.9E+02 0.0042 25.5 7.1 78 224-319 3-81 (81)
28 KOG1029|consensus 33.7 86 0.0019 38.5 6.3 26 618-643 197-224 (1118)
29 KOG0520|consensus 32.1 82 0.0018 39.3 5.9 86 220-323 403-495 (975)
30 PF12238 MSA-2c: Merozoite sur 27.5 1.7E+02 0.0036 30.6 6.4 42 413-458 42-83 (205)
31 PF05660 DUF807: Coxiella burn 25.4 98 0.0021 30.4 4.1 45 278-324 41-91 (142)
32 KOG1924|consensus 23.9 2.1E+02 0.0045 35.6 7.1 14 68-81 61-74 (1102)
33 KOG3895|consensus 22.7 2.6E+02 0.0057 32.0 7.2 19 550-568 422-440 (488)
34 KOG1924|consensus 21.0 2.1E+02 0.0046 35.5 6.5 6 498-503 512-517 (1102)
No 1
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
Probab=100.00 E-value=4.7e-70 Score=520.14 Aligned_cols=166 Identities=49% Similarity=0.841 Sum_probs=160.0
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||+|| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||+ |++
T Consensus 1 P~l~I~EQPk~r~~RFRY~cEgrSaGsipG~~St~~~KT~Pti~i~nY~G~a~V~vslVT~d~p~rpHpH~LVGK~-C~~ 79 (169)
T cd07885 1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINNYTGPGRVRISLVTKDPPHKPHPHELVGKD-CKD 79 (169)
T ss_pred CcEEEEecCCcCcceEEecccCCCCCCCCcCcCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCcchhcccc-cCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC-cCCCCCCeeeEEEEEEe
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN-RDNLDLNAVRLCFQAYL 195 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~-aK~iDLn~VRLcFqafL 195 (695)
|+|++.|+|++|+++|+|||||||+||||+ +|+.|+++++|||++ ++++ +++||||+|||||||||
T Consensus 80 Gvc~v~v~p~~~~~~F~nLGIqcV~KKdv~e~L~~R~~~~~~pf~~------------~~~~~~~~iDLn~VRLcFqafl 147 (169)
T cd07885 80 GYYEAELSPDRCIHSFQNLGIQCVKKRDLEQAVSQRIQTNNNPFNV------------PIEEQRADYDLNAVRLCFQVTV 147 (169)
T ss_pred cEEEEEeCCCCcEEEeccceeEEEEeccHHHHHHHHHHhcCCCCcc------------chhHhhcccchhhEEEEEEEEE
Confidence 999999999999999999999999999999 999999999999987 3333 78999999999999999
Q ss_pred eCCCCCeEeeccccccccccCC
Q psy12708 196 PKDKDNVIKLEPVVSDIIYDAK 217 (695)
Q Consensus 196 pd~~G~t~~L~PVvS~PIyDsK 217 (695)
+|++|++++|+||+|+||||++
T Consensus 148 ~d~~G~~~~l~PVvS~pIyD~~ 169 (169)
T cd07885 148 RDPSGRLLPLPPVLSQPIYDNR 169 (169)
T ss_pred ECCCCCEEeCCCeeccccccCC
Confidence 9999999999999999999986
No 2
>cd07933 RHD-n_c-Rel N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the c-Rel family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B
Probab=100.00 E-value=8.5e-70 Score=519.51 Aligned_cols=166 Identities=45% Similarity=0.867 Sum_probs=159.7
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||+|| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||+ |++
T Consensus 1 P~l~I~EQPkqrg~RFRY~CEgrSaGsipG~~St~~~KT~Ptv~i~nY~G~a~I~VslVT~d~P~rpHpH~LVGK~-C~~ 79 (172)
T cd07933 1 PYVEIFEQPRQRGMRFRYKCEGRSAGSIPGERSTDNNRTYPSIQILNYTGKGKVRITLVTKNEPYKPHPHDLVGKD-CRD 79 (172)
T ss_pred CcEEEEeCCCcccceEEEccCCCCCCCCCCCcCCCCCCcCCeEEEEcCcCCEEEEEEEEeCCCCCCCCcccccccc-CCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC---cCCCCCCeeeEEEEE
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN---RDNLDLNAVRLCFQA 193 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~---aK~iDLn~VRLcFqa 193 (695)
|+|++.|+|++|+++|+|||||||+||||+ +|+.|++++.|||++ ++++ +++||||.|||||||
T Consensus 80 G~c~~~v~p~~~~~~F~nLGIqcV~KK~v~e~L~~R~~~~~~pf~~------------~~~~~~~~~~iDLn~VRLCFqa 147 (172)
T cd07933 80 GYYEAEFGPERRVLAFQNLGIQCVRRREVKEAIMLRISRGINPFNV------------PEEQLLQIEEYDLNVVRLCFQI 147 (172)
T ss_pred ceEEEEECCCCcEEEecccceEEEEhhhHHHHHHHHHHhcCCCCcc------------hHhHhhhhhccccceEEEEEEE
Confidence 999999999999999999999999999999 999999999999987 3332 678999999999999
Q ss_pred EeeCCCCC-eEeeccccccccccCC
Q psy12708 194 YLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 194 fLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
||+|++|+ +++|+||+|+||||+|
T Consensus 148 fl~d~~G~~t~~l~PVvS~pIyD~~ 172 (172)
T cd07933 148 FLPDEHGNYTTALPPIVSNPIYDNR 172 (172)
T ss_pred EEECCCCCCcccCCCccccccccCC
Confidence 99999999 8999999999999986
No 3
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Dorsal and Dif (Dorsal-related immunity factor), and similar proteins. Dorsal and Dif are Rel-like transcription factors, which play roles in mediating innate immunity in Drosophila. They are activated via the Toll pathway. Cytoplasmic Dorsal/Dif are inactivated via forming a complex with Cactus, the Drosophila homologue of mammalian I-kappa B proteins. In response to signals, Cactus is degraded and Dorsal/Dif can be transported into the nucleus, where they act as transcription factors. Dorsal is also an essential gene in establishing the proper dorsal/ventral polarity in the developing embryo.
Probab=100.00 E-value=1.4e-69 Score=518.78 Aligned_cols=167 Identities=52% Similarity=0.959 Sum_probs=160.8
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|+|||+|+|+|||||+||||+.|++
T Consensus 1 P~l~I~EQPk~rg~RFRY~cEGrSaGsipG~~S~~~~KT~PtVki~nY~G~a~I~vslVT~d~p~rpHpH~LVGk~~C~~ 80 (173)
T cd07887 1 PYVRIVEQPTSRALRFRYECEGRSAGSIPGANSTSEGKTFPTIQVVNYDGRAVVVVSCVTKDEPFRPHPHNLVGKEGCKK 80 (173)
T ss_pred CcEEEEecCCcccceEEecccCCCCCCCcCCcCCCCCCcCCeEEEecccCCEEEEEEEEeCCCCCCCCCccccCccCCCC
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999966999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcC---CcCCCCCCeeeEEEEE
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFN---NRDNLDLNAVRLCFQA 193 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e---~aK~iDLn~VRLcFqa 193 (695)
|+|++.|+|++|+++|+|||||||+||||+ +|++|+++++|||++ ++. ++++||||.|||||||
T Consensus 81 Gvc~~~v~p~~~~~~F~nLGIqcvkKk~v~e~L~~R~~~~vdpf~~------------~~~~~~~~~~~dLn~VRLcFqa 148 (173)
T cd07887 81 GVCTKKINPTEMRIVFQKLGIQCVKKKDVEESLKLREEINVDPFRT------------GFDHKDQINSIDLNVVRLCFQV 148 (173)
T ss_pred CeEEEEeCCCCcEEEeccCceEEEEeccHHHHHHHHHHhcCCcccc------------chhhhhhhhccccccEEEEEEE
Confidence 999999999999999999999999999999 999999999999998 433 3679999999999999
Q ss_pred EeeCCCCC-eEeeccccccccccCC
Q psy12708 194 YLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 194 fLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
|++|++|+ +++|+||+|+||||+|
T Consensus 149 fl~d~~G~~~~~l~PVvS~pIyd~K 173 (173)
T cd07887 149 FLEDENGRFTVPLPPVVSDPIYDKK 173 (173)
T ss_pred EEECCCCCCcccCCCcCccccccCC
Confidence 99999999 7999999999999997
No 4
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the RelB family of transcription factors, categorized as class II NF-kappa B family members. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the anky
Probab=100.00 E-value=5.7e-68 Score=507.27 Aligned_cols=167 Identities=49% Similarity=0.780 Sum_probs=158.0
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceE--EEEEEEecCCCCCccccccccccCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAH--LVVSCVSKDSPYRSHPHKLVSKDNC 115 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAv--IvVsLVTkDdp~RPHPH~LVGKd~C 115 (695)
|||+|+|||+|| |||||+|||+|||||||++|++++||||||||+||.|+|. |+|+|||+|+|+|||||+||||+ |
T Consensus 1 P~l~I~EQPkqrg~RFRY~cEgrSaGsipG~~St~~~KTyPtV~i~ny~G~a~v~V~vslVT~d~p~rpHpH~LVGK~-C 79 (172)
T cd07886 1 PRLLITEQPKQRGMRFRYECEGRSAGSILGESSTEANKTQPAIEIQNCIGLKEVTVTVCLVWKDPPHRVHPHGLVGKD-C 79 (172)
T ss_pred CcEEEEecCCcccceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecccCCceEEEEEEEeeCCCCCCCCCccccccc-C
Confidence 899999999999 9999999999999999999999999999999999999974 78899999999999999999996 9
Q ss_pred CCCcEEEEecCC-CeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEEEE
Q psy12708 116 TNGIFCATLLEG-DMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQA 193 (695)
Q Consensus 116 kdGVceV~L~P~-dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcFqa 193 (695)
++|+|++.|+|+ +|+++|+|||||||+||||+ +|..|+++++|||++.. .+.+++||||.|||||||
T Consensus 80 ~~Gvc~v~v~p~~~~~~~F~nLGIqcv~KK~v~e~L~~R~~~~~dpf~~~~-----------~~~~~~~DLn~VRLCFqa 148 (172)
T cd07886 80 PNGICQVTLNPHSSPRHSFSNLGIQCVRKREIEAAIETRLQLNIDPFKAGS-----------LKNHEEVDMNVVRLCFQA 148 (172)
T ss_pred CCceEEEEeCCCCccEEEEcCceeEeeehhhhHHHHHHHHHccCCcccccc-----------cccccccccccEEEEEEE
Confidence 999999999997 68999999999999999999 99999999999999821 223789999999999999
Q ss_pred EeeCCCCCeEeeccccccccccCC
Q psy12708 194 YLPKDKDNVIKLEPVVSDIIYDAK 217 (695)
Q Consensus 194 fLpd~~G~t~~L~PVvS~PIyDsK 217 (695)
||+|++|.+++|+||+|+||||+|
T Consensus 149 fl~d~~g~~~~l~PVvS~pIyD~K 172 (172)
T cd07886 149 SYRDDDGRKDCLSPVLSEPIYDKK 172 (172)
T ss_pred EEECCCCCEEeCCCeEccCcccCC
Confidence 999999999999999999999997
No 5
>cd07934 RHD-n_NFkB2 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B2 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B2 is commonly referred to as p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is
Probab=100.00 E-value=1.5e-67 Score=509.21 Aligned_cols=178 Identities=38% Similarity=0.587 Sum_probs=156.5
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||+|| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||++|++
T Consensus 1 P~l~I~EQPkqrg~RFRY~CEGrSaGsipG~~St~~~KT~PtV~i~nY~G~a~I~VslVT~d~p~rpHpH~LVGK~c~~~ 80 (185)
T cd07934 1 PYLVIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKGRKTYPTVKICNYVGMARIEVDLVTHTDPPRVHAHSLVGKHCNES 80 (185)
T ss_pred CcEEEEecCCccCceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCeeccCcccccC
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999985578
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHh----hcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEEE
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQF----CQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQ 192 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel----~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcFq 192 (695)
|+|+|.|+|++|+|+|+|||||||+||||+ +|..|.+. +.+||...+...+.+..++ .+.+++||||+||||||
T Consensus 81 Gvc~v~v~p~~~~~~F~nLGIqcv~KK~v~~~L~~R~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~DLn~VRLCFq 159 (185)
T cd07934 81 GNCSVDVGPKDMTAQFSNLGILHVTKKNMMEILKEKLKRQKLRNTGPYKLTEAEERELEQEA-KELKKVMDLSIVRLKFT 159 (185)
T ss_pred ceEEEEECCCccEEEecCcceEEEecccHHHHHHHHHHhhhhccCCCcccChHHHHHHHHHH-HhhhhccccccEEEEEE
Confidence 999999999999999999999999999999 88776432 3455543222223332221 12368999999999999
Q ss_pred EEeeCCCCC-eEeeccccccccccCC
Q psy12708 193 AYLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 193 afLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
||++|++|+ +++|+||+|+||||+|
T Consensus 160 afl~d~~G~~t~~l~PVvS~pIyD~K 185 (185)
T cd07934 160 AYLRDSNGSYTLALKPVISDPIHDSK 185 (185)
T ss_pred EEEECCCCCCccCCCCeEccCCccCC
Confidence 999999999 8899999999999997
No 6
>cd07827 RHD-n N-terminal sub-domain of the Rel homology domain (RHD). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal sub-domain, which may be distantly related to the DNA-binding domain found in P53. The C-terminal sub-domain has an immunoglobulin-like fold and serves as a dimerization module that also binds DNA (see cd00102). The RHD is found in NF-kappa B, nuclear factor of activated T-cells (NFAT), the tonicity-responsive enhancer binding protein (TonEBP), and the arthropod proteins Dorsal and Relish (Rel).
Probab=100.00 E-value=2.5e-67 Score=504.82 Aligned_cols=170 Identities=51% Similarity=0.866 Sum_probs=159.7
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|||||+|+|++||||+||||+.|++
T Consensus 1 P~L~I~EQPk~rg~RFRY~cEg~S~Gsi~G~~St~~~kt~PtVkl~ny~Gpa~i~vslvT~d~p~~pHpH~Lvgk~~C~~ 80 (174)
T cd07827 1 PYLEITEQPKQRGHRFRYECEGRSAGSIPGENSTADRKTFPTVKLRNYNGPAKIVVSLVTKDDPPKPHPHQLVGKTDCRD 80 (174)
T ss_pred CceEEEECCCcccceeEeccCCCCCCCCcCCccCCCCCcCCeEEEecCcCCEEEEEEEEECCCCCCCCcceeecccCCCC
Confidence 899999999999 9999999999999999999999999999999999999999999999999999999999999977999
Q ss_pred CcEEEEecCC-CeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEEEEEe
Q psy12708 118 GIFCATLLEG-DMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYL 195 (695)
Q Consensus 118 GVceV~L~P~-dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcFqafL 195 (695)
|+|+|.|+|+ +|+|+|+||||||||||||+ +|..|++++.|||++... ....+++||||+|||||||||
T Consensus 81 gvc~v~v~p~~~m~~~f~nlGIq~v~kkdv~~~l~~r~~~~~~p~~~~~~---------~~~~~~~~dln~VRLcFqafl 151 (174)
T cd07827 81 GVCEVRLGPKNNMTASFNNLGIQCVRKKDVEEALGQRIQLGIDPFMVHKG---------PEGNASDIDLNRVRLCFQAFI 151 (174)
T ss_pred CeEEEEeCCCCCcEEEEcCcceEEEEehhHHHHHHHHHHhcCChhhhhhH---------HhhhhhhcccceEEEEEEEEE
Confidence 9999999997 99999999999999999999 999999999999976110 122378999999999999999
Q ss_pred eCCCCC-eEeeccccccccccCC
Q psy12708 196 PKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 196 pd~~G~-t~~L~PVvS~PIyDsK 217 (695)
++++|+ +.+|+||+|+||||+|
T Consensus 152 ~~~~G~~~~~l~PV~S~pI~d~K 174 (174)
T cd07827 152 EDSDGGFTLPLPPVLSNPIYDKK 174 (174)
T ss_pred ECCCCCEeeecCCeeccccccCC
Confidence 999988 8889999999999997
No 7
>cd07883 RHD-n_NFkB N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 and B2 families of transcription factors, also referred to as class I members of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. Family members include NF-kappa B1 and NF-kappa B2. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form), while NF-kappa B2 is called p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large
Probab=100.00 E-value=3.8e-67 Score=510.67 Aligned_cols=177 Identities=42% Similarity=0.694 Sum_probs=155.8
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||+ |++
T Consensus 1 P~l~I~EQPk~rg~RFRY~CEG~ShGsipG~~S~~~~KT~PtVki~nY~G~a~I~VslVT~d~p~rpHpH~LVGK~-C~~ 79 (197)
T cd07883 1 PYLEILEQPKQRGFRFRYGCEGPSHGGLPGASSEKNKKSYPTVKICNYQGPARIVVQLVTNSEPPRLHAHSLVGKH-CED 79 (197)
T ss_pred CcEEEEeCCCccCceEEeccCCCCCCCCcCCcCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCccccCCC-CCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCC-------CCccc----cchh------hhhcccCcCCc
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRP-------FNSEK----NSAW------TLLGVMGFNNR 179 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dP-------f~t~~----n~~~------~l~~dig~e~a 179 (695)
|+|++.|+|++|+|+|+|||||||+||||+ +|+.|++...++ |.+.- ...+ .+..+ ...++
T Consensus 80 Gvc~v~v~p~~~~~~F~nLGIqcV~KK~v~e~L~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~i~~e-a~~~a 158 (197)
T cd07883 80 GICTVQVGPKDMTAQFPNLGILHVTKKNVVETLEARLLAQCTRGYNPGDLVHVDAEGGGDRQLTDEEQAEIRQK-AKQQA 158 (197)
T ss_pred CeEEEEeCCCCcEEEecCcceEEEecccHHHHHHHHHHhhhccccCcccccccccccccccccchHHHHHHHHH-HHhhh
Confidence 999999999999999999999999999999 998887655433 32210 0011 11111 12247
Q ss_pred CCCCCCeeeEEEEEEeeCCCCC-eEeeccccccccccCC
Q psy12708 180 DNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 180 K~iDLn~VRLcFqafLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
++||||+||||||||++|++|+ +++|+||+|+||||+|
T Consensus 159 ~~~DLn~VRLcFqafl~d~~G~~t~~l~PVvS~pIyD~K 197 (197)
T cd07883 159 KSMDLSVVRLCFQAFLPDSNGSFTRPLKPVISDAIYDSK 197 (197)
T ss_pred hccccceEEEEEEEEEECCCCCCcccCCCcCccccccCC
Confidence 8999999999999999999999 8999999999999997
No 8
>cd07935 RHD-n_NFkB1 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex
Probab=100.00 E-value=3.5e-66 Score=504.88 Aligned_cols=175 Identities=41% Similarity=0.673 Sum_probs=153.9
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||||++|++++||||||+|+||.|+|+|+|||||+|+|+|||||+||||+ |++
T Consensus 1 P~l~I~EQP~~r~~RFRY~cEg~s~GsipG~~S~~~~KT~Ptv~i~nY~G~a~I~VsLVT~d~p~rpHpH~LVGK~-C~~ 79 (202)
T cd07935 1 PYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKH-CED 79 (202)
T ss_pred CcEEEEecCCcccceEEEeccCCCCCCCcCccCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCCccccccC-CCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccch-------------------hhhhc-----
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSA-------------------WTLLG----- 172 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~-------------------~~l~~----- 172 (695)
|+|++.|+|++|+++|+|||||||+||||+ +|+.|. .++|+++.+.. ++..+
T Consensus 80 Gvc~v~v~p~d~~~~F~NLGIqcV~KKdv~e~L~~R~---~~~~~~~~~~~~~~~pe~~~~~~~~~~~r~lt~~e~~~i~ 156 (202)
T cd07935 80 GICTVTAGPKDMVVGFANLGILHVTKKKVFETLEARM---TEACKKGYNPGLLVHPELAYLQAEGGGDRQLTEREKEIIR 156 (202)
T ss_pred ceeEEEeCCCcceEEecCcceEEEecccHHHHHHHHH---hhhhhcCCCccccccccccccccccccccccchHHHHHHH
Confidence 999999999999999999999999999999 888875 23333322211 00000
Q ss_pred ccCcCCcCCCCCCeeeEEEEEEeeCCCCC-eEeeccccccccccCC
Q psy12708 173 VMGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 173 dig~e~aK~iDLn~VRLcFqafLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
....+.+++||||+||||||||++|++|+ +++|.||+|+||||+|
T Consensus 157 ~~a~~~~~~mDLN~VRLcFqafl~d~~G~~t~~l~PVvS~pIyD~K 202 (202)
T cd07935 157 QAAVQQTKEMDLSVVRLMFTAFLPDSTGGFTRRLEPVVSDAIYDSK 202 (202)
T ss_pred HHHHhhhhcccceeEEEEEEEEEECCCCCCcccCCCcCccccccCC
Confidence 00112478999999999999999999999 8899999999999997
No 9
>PF00554 RHD: Rel homology domain (RHD); InterPro: IPR011539 The Rel homology domain (RHD) is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish, NFAT, among others. Some of these transcription factors appear to form multi-protein DNA-bound complexes []. Phosphorylation of the RHD appears to play a role in the regulation of some of these transcription factors, acting to modulate the expression of their target genes []. The RHD is composed of two immunoglobulin-like beta-barrel subdomains that grip the DNA in the major groove. The N-terminal specificity domain resembles the core domain of the p53 transcription factor, and contains a recognition loop that interacts with DNA bases; the C-terminal dimerisation domain contains the site for interaction with I-kappaB [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1A66_A 1NFA_A 2I9T_B 1LE9_F 1NFK_A 1OOA_B 1LE5_F 1VKX_B 1LEI_B 2V2T_B ....
Probab=100.00 E-value=5.9e-63 Score=472.41 Aligned_cols=166 Identities=47% Similarity=0.798 Sum_probs=142.4
Q ss_pred EEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCCCc
Q psy12708 41 IEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGI 119 (695)
Q Consensus 41 L~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~CkdGV 119 (695)
|+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|+|||+|+|++||||+||||+ |++|+
T Consensus 1 l~I~eQP~~~~~RfRY~~Eg~S~Gsl~g~~s~~~~kt~PtVkl~ny~g~a~i~v~lvt~~~~~~pH~H~Lvgk~-c~~gv 79 (169)
T PF00554_consen 1 LVITEQPKQRGFRFRYECEGGSHGSLPGESSTRSKKTFPTVKLLNYNGPARIRVSLVTKDDPPRPHPHRLVGKD-CKDGV 79 (169)
T ss_dssp EEEEE-B-SSSB--EEGGCSSSSSBS-BTT-BSTSSSS-EEEEES-TSSEEEEEEEEESSSS-EB-SSEEESTT-EETTE
T ss_pred CeEEECCccccceeEEecCCCCccccccccccCCCCCCCeEEEEecCCceEEEEEEEEcCCCcCCcceEeecCc-cCCCe
Confidence 7999999999 999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred EEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEEEEEeeCC
Q psy12708 120 FCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKD 198 (695)
Q Consensus 120 ceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcFqafLpd~ 198 (695)
|++.|+|++|+++|+||||||+|||||+ +|..|++++.+||+.. ....+++++||||+|||||||||+|+
T Consensus 80 ~~v~v~p~~~~~sF~nlGI~~vrkkdv~~~l~~R~~~~~~~~~~~---------~~~~~~~~~~dLn~VRLcFqa~l~d~ 150 (169)
T PF00554_consen 80 CEVEVGPEDMTASFDNLGIQCVRKKDVEERLKKRIELNIDPKNIK---------FEAEKEAKDMDLNVVRLCFQAFLPDS 150 (169)
T ss_dssp EEEEEBSTTSEEE-SSEEEEE--TTTHHHHHHHHHHTTHHTTHHH---------HHHHCSHTTS-TTEEEEEEEEEEECS
T ss_pred EEEEeCCCcceEEecCcchhhhhhHhHHHHHHHhhhcCCchhhhh---------hHHhhhhccccccEEEEEEEEEEecC
Confidence 9999999999999999999999999999 9999999999988741 11234588999999999999999999
Q ss_pred CCC-eEeeccccccccccC
Q psy12708 199 KDN-VIKLEPVVSDIIYDA 216 (695)
Q Consensus 199 ~G~-t~~L~PVvS~PIyDs 216 (695)
+|+ +.+|.||+|+||||+
T Consensus 151 ~g~~~~~l~pV~S~pI~d~ 169 (169)
T PF00554_consen 151 NGNFTRPLPPVVSNPIYDS 169 (169)
T ss_dssp TSSEEEEEEEEEEEEEEBT
T ss_pred CCCcceecCCeecccCcCC
Confidence 998 888999999999996
No 10
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=100.00 E-value=4.1e-62 Score=462.35 Aligned_cols=151 Identities=34% Similarity=0.514 Sum_probs=141.2
Q ss_pred ceEEEEecCCcccccccccCC-cCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCC-CCccccccccccCCC
Q psy12708 39 PYIEILEQPKSKVRFRYECEG-RSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSP-YRSHPHKLVSKDNCT 116 (695)
Q Consensus 39 PyL~IvEQPkqrfRFRYecEG-rShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp-~RPHPH~LVGKd~Ck 116 (695)
|||+|+|||+++|||||+||| +|||||+|++|++++||||||||+||.|+|+|+|||||+|+| +|||||+||||+ |.
T Consensus 1 P~l~IvEQP~~~~RFRY~cEg~~SaGsipG~~St~~~KT~Ptv~i~ny~G~a~I~vslvT~d~p~~~pHpH~LVgK~-c~ 79 (159)
T cd07884 1 PFLRIVEQPVDKFRFRYKSEMHGTHGSLLGERSTSSKKTFPTVKLCNYRGQAVIRCSLYQADDNRRKPHVHKLVGKQ-GD 79 (159)
T ss_pred CcEEEEeCCcccceEEeecCCCCCcCCcCCCcCCCCCCcCCeEEEecCcCCEEEEEEEEECCCCCCCCCCccccccc-cc
Confidence 899999999999999999999 999999999999999999999999999999999999999998 999999999997 88
Q ss_pred CCcEEEEec---C-CCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEE
Q psy12708 117 NGIFCATLL---E-GDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCF 191 (695)
Q Consensus 117 dGVceV~L~---P-~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcF 191 (695)
+|+|++.+. | .+|+|+|+|||||||+||||+ +|..| ++||||.|||||
T Consensus 80 ~g~c~~~~~~~~pe~~~~~~F~nLGIqcv~Kk~v~~~L~~r---------------------------~~idLn~VRLcF 132 (159)
T cd07884 80 DDVCDPHDIEVSPEGDYVAMFQNMGIIHTAKKNIPEELYKK---------------------------KNMNLNQVVLRF 132 (159)
T ss_pred CCCceeeccccCCCCccEEEeCCcceEEEEecchHHHHhhh---------------------------cccCcccEEEEE
Confidence 899998754 4 389999999999999999999 77776 268999999999
Q ss_pred EEEeeCCCCC-eEeeccccccccccCC
Q psy12708 192 QAYLPKDKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 192 qafLpd~~G~-t~~L~PVvS~PIyDsK 217 (695)
|||+++++|+ +.+|+||+|+||||+|
T Consensus 133 qafl~~~~G~~~~~l~PVvS~pI~d~K 159 (159)
T cd07884 133 QAFAVSANGHLRPICPPVYSNPINNLK 159 (159)
T ss_pred EEEEECCCCCEecCCCCeEcccccCCC
Confidence 9999999999 5556999999999986
No 11
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development. This group al
Probab=100.00 E-value=3.1e-51 Score=387.45 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=128.6
Q ss_pred ceEEEEecCCcccccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCcccccccc----c--
Q psy12708 39 PYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVS----K-- 112 (695)
Q Consensus 39 PyL~IvEQPkqrfRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVG----K-- 112 (695)
|+|+|+|||++||||||+||| |||||+|.+ +||||||||+||+|+|+|+|+|||+|+|+|||||+||| |
T Consensus 1 ~~l~I~eQPk~~~RfRY~cEG-s~Gsi~~~~----~kt~PtVkl~~y~gpa~v~V~lvT~d~p~rpH~h~lvgr~~GK~~ 75 (161)
T cd07927 1 YELRIEVQPEPHHRARYETEG-SRGAVKAPS----TGGFPTVKLHGYMEPVGLQVFIGTASGRLKPHAFYQVHRITGKTT 75 (161)
T ss_pred CceEEEECCchhceEEeeccC-CCCCccCCC----CCCCceEEEecccccEEEEEEEEeCCCCCCCCcceeecccccccc
Confidence 689999999999999999999 699999953 59999999999999999999999999999999999888 4
Q ss_pred cCCCC----CcE--EEEecC-CCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCC
Q psy12708 113 DNCTN----GIF--CATLLE-GDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDL 184 (695)
Q Consensus 113 d~Ckd----GVc--eV~L~P-~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDL 184 (695)
++|++ |+| +|.+.| ++|+++|+||||||+||+||| +|..|+ ..+++
T Consensus 76 ~~Cke~~i~g~~v~ei~~~p~~~Mt~~f~~lGI~~vrn~Die~~l~~~~--------------------------~~~~~ 129 (161)
T cd07927 76 TPCKEKIIGNTKVLEIPLEPKNNMTATIDCAGILKLRNADIELRKGETD--------------------------IKKKN 129 (161)
T ss_pred cccccccccceEEEEecCCCCcceEEEeccceeEEeehhhHHHhhcccc--------------------------ccccc
Confidence 24875 545 455667 589999999999999999999 333321 23569
Q ss_pred CeeeEEEEEEeeCCCCCeEeeccccccccccCC
Q psy12708 185 NAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAK 217 (695)
Q Consensus 185 n~VRLcFqafLpd~~G~t~~L~PVvS~PIyDsK 217 (695)
|+|||||||||++.+|..+.|+ |+|+||.|+|
T Consensus 130 trvRLvFrv~ip~~~g~~~~lq-~~s~~i~csq 161 (161)
T cd07927 130 TRARLVFRVHIPEKDGRIVSLQ-TASNPIECSQ 161 (161)
T ss_pred cEEEEEEEEeecCCCCCEEEEE-ecCcceEecC
Confidence 9999999999999999999996 9999999986
No 12
>cd07882 RHD-n_TonEBP N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the tonicity-responsive enhancer binding protein (TonEBP), also called NFAT5. Mammalian TonEBP regulates the expression of genes in response to tonicity. It plays a pivotal role in urinary concentrating mechanisms in kidney medulla, by triggering the accumulation of osmolytes that enable renal medullary cells to tolerate high levels of urea and salt.
Probab=100.00 E-value=6.5e-48 Score=364.89 Aligned_cols=147 Identities=25% Similarity=0.428 Sum_probs=129.9
Q ss_pred eEEEEecCCcccccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccc----ccccccc--
Q psy12708 40 YIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHP----HKLVSKD-- 113 (695)
Q Consensus 40 yL~IvEQPkqrfRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHP----H~LVGKd-- 113 (695)
.|+|+|||++||||||+||| |||||++.+ ++|||||||+||+|+|+|+|+|||+|+++|||+ |+|+||+
T Consensus 2 ~L~I~eQP~~~~RaRY~tEG-SrGsvk~~s----~~~~PtVkl~gy~gp~~l~V~lvT~d~~~rPH~fyq~~k~~Gk~~t 76 (161)
T cd07882 2 ELKILVQPETQHRARYLTEG-SRGSVKDRS----QQGFPTVKLEGYNKPVVLQVFVGTDSGRVKPHGFYQACKVTGRNTT 76 (161)
T ss_pred eeEEEECCchhceEeeeccC-cCccccCCC----CCcCCeEEEeccCCCEEEEEEEEeCCCCcCCCcceeeeecccCCCc
Confidence 58999999999999999999 789999653 579999999999999999999999999999995 5699997
Q ss_pred CCC----CC--cEEEEecCC-CeEEEEecceeeEEechhHHHHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCe
Q psy12708 114 NCT----NG--IFCATLLEG-DMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNA 186 (695)
Q Consensus 114 ~Ck----dG--VceV~L~P~-dMtasFdNLGIqcVrKKDVEaLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~ 186 (695)
.|. +| ||+|.|+|+ +|+|+|+||||||+||+||| .|. +.. ...+++|+
T Consensus 77 ~c~E~~~~gt~v~ev~~~P~~~mta~~d~lGIl~lrn~Dve---~r~--~~~--------------------~~~~k~t~ 131 (161)
T cd07882 77 PCEEVDVEGTTVIEVPLDPTNNMTISVDCVGILKLRNADVE---ARI--GIA--------------------RSKKKSTR 131 (161)
T ss_pred cceeeccCCcEEEEEEcCCCCceEEEecccceEEeehhchh---hhc--cch--------------------hhcccccE
Confidence 586 56 999999996 99999999999999999999 332 221 02356999
Q ss_pred eeEEEEEEeeCCCCCeEeeccccccccccCC
Q psy12708 187 VRLCFQAYLPKDKDNVIKLEPVVSDIIYDAK 217 (695)
Q Consensus 187 VRLcFqafLpd~~G~t~~L~PVvS~PIyDsK 217 (695)
|||||||||++.+|..+.| ||+|+||.|+|
T Consensus 132 vRLvFrv~ip~~~G~~~~l-qv~S~pI~c~q 161 (161)
T cd07882 132 VRLVFRVIIPRKDGSTLTL-QTVSNPILCTQ 161 (161)
T ss_pred EEEEEEEEecCCCCCEEec-cccccceeecC
Confidence 9999999999999998877 69999999986
No 13
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=100.00 E-value=1.9e-44 Score=321.94 Aligned_cols=98 Identities=45% Similarity=0.776 Sum_probs=96.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
|+|||||++||||.||+|||||||||+|+||+|||||+++++.+||+ +|+++|||||+|||||||||+|++|++||+|
T Consensus 1 L~I~r~s~~sgsv~GG~Ev~LLcdKV~K~dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~~pV~V 80 (102)
T cd01177 1 LKICRLDKTSGSVKGGDEVYLLCDKVQKEDIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDITEPVKV 80 (102)
T ss_pred CEEEEecCcccccCCCcEEEEEecccCCCCCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCCCceEE
Confidence 79999999999999999999999999999999999998777899999 9999999999999999999999999999999
Q ss_pred EEEEEcCCC--CCCCccceeec
Q psy12708 300 KIQLVTKKD--ISEPYNFMLTP 319 (695)
Q Consensus 300 ~IqL~RpSD--tSEP~~FTY~P 319 (695)
+|||+|+|| +|+|++|+|+|
T Consensus 81 ~iqL~Rpsd~~~Sep~~F~Y~P 102 (102)
T cd01177 81 KIQLKRPSDGERSESVPFTYVP 102 (102)
T ss_pred EEEEEeCCCCCccCCcceEEcC
Confidence 999999999 99999999998
No 14
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=100.00 E-value=2.8e-38 Score=282.15 Aligned_cols=96 Identities=29% Similarity=0.462 Sum_probs=90.6
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEc-cCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEE-QDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVH 298 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~Ee-ddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~ 298 (695)
+.|||+|++||||+||+||||||+||+| ||+|||||+ ++|+.+||+ +|+..++ ||+||||+||||+|++|++||+
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~k-DikV~F~E~~~dG~~~WE~~a~f~~~~~-hQ~aIvf~tPpY~~~~I~~pV~ 79 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLK-DSKVVFQEKGQDGEAQWEAEATIDKEKS-HQNHLVVEVPPYHNKHVAAPVQ 79 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCC-CCEEEEEEeCCCCccceEEEEEeChHhc-eeeeEEEecCCCCCCCcCCceE
Confidence 5799999999999999999999999999 799999996 678899999 9987655 5999999999999999999999
Q ss_pred EEEEEEcCCC-CCCCccceeec
Q psy12708 299 VKIQLVTKKD-ISEPYNFMLTP 319 (695)
Q Consensus 299 V~IqL~RpSD-tSEP~~FTY~P 319 (695)
|+|||+|+++ +|+|++|||+|
T Consensus 80 V~~~l~~~~~~~S~~~~FtY~P 101 (101)
T cd01178 80 VQFYVVNGKRKRSQPQTFTYTP 101 (101)
T ss_pred EEEEEEcCCCCcCCCCCcEecC
Confidence 9999999877 99999999998
No 15
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development.
Probab=100.00 E-value=1e-36 Score=288.84 Aligned_cols=153 Identities=26% Similarity=0.417 Sum_probs=131.9
Q ss_pred ccCCCCce-EEEEecCCcccccccccCCcCcccccCcccCCCCCCcceEEeeCCCC--ceEEEEEEEecCCC-CCcc---
Q psy12708 33 LDASRRPY-IEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVG--DAHLVVSCVSKDSP-YRSH--- 105 (695)
Q Consensus 33 l~~~~~Py-L~IvEQPkqrfRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~G--pAvIvVsLVTkDdp-~RPH--- 105 (695)
+++..+.| |+|+.||+++||+||++||++ |++++.+ .+||+|||+||+| ++.++|++.|+|+. .+||
T Consensus 4 lps~~g~~eL~i~vQPe~hHRA~YeTEGSR-GaVK~~s-----gg~P~VkL~Gy~e~kp~~LQvFigt~d~r~~~PH~FY 77 (175)
T cd07881 4 LPSQSGQYELRIEVQPKPHHRAHYETEGSR-GAVKAST-----GGHPVVQLHGYMENKPLTLQMFIGTADDRYLRPHAFY 77 (175)
T ss_pred CCCcCCCEEEEEEeCCchhhhhhhhccCcc-cccccCC-----CCCceEEEEeecCCcceEEEEEEecCCCcccCCccce
Confidence 44555555 999999999999999999998 9998753 5999999999987 89999999999887 6999
Q ss_pred -cccccccc---CCC----CC--cEEEEecC-CCeEEEEecceeeEEechhHHHHHHHHHhhcCCCCccccchhhhhccc
Q psy12708 106 -PHKLVSKD---NCT----NG--IFCATLLE-GDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVM 174 (695)
Q Consensus 106 -PH~LVGKd---~Ck----dG--VceV~L~P-~dMtasFdNLGIqcVrKKDVEaLk~Rkel~~dPf~t~~n~~~~l~~di 174 (695)
+|+++||+ .|+ +| |.+|.+.| +||++++||+||+++||.||| +|+ ++ + ++
T Consensus 78 Q~hritGk~v~T~~~E~~i~gT~vlEv~l~P~~nMt~~iDC~GIlKLRN~DiE---lRk--ge----t----------d~ 138 (175)
T cd07881 78 QVHRITGKTVATASQEIIISNTKVLEIPLLPENNMRASIDCAGILKLRNSDIE---LRK--GE----T----------DI 138 (175)
T ss_pred EEEEEEcCCCcccceeEecCCCeEEEeeccCCCCeEEEEeehhhhhhhccchh---hhc--cc----C----------Cc
Confidence 69999997 565 34 78999999 599999999999999999999 554 32 1 22
Q ss_pred CcCCcCCCCCCeeeEEEEEEeeCCCCCeEeeccccccccccCC
Q psy12708 175 GFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAK 217 (695)
Q Consensus 175 g~e~aK~iDLn~VRLcFqafLpd~~G~t~~L~PVvS~PIyDsK 217 (695)
|.+ +++|||+|||+||.++|+++.|| |+|+||.|+|
T Consensus 139 ~rk------~Tr~RlvFRv~Ip~~~G~~~sLQ-v~S~pI~CsQ 174 (175)
T cd07881 139 GRK------NTRVRLVFRVHIPQPSGRVLSLQ-VASNPIECSQ 174 (175)
T ss_pred ccc------ccEEEEEEEEeccCCCCCEEEEE-ecCCceEecc
Confidence 433 79999999999999999999996 9999999997
No 16
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=100.00 E-value=1.6e-36 Score=270.20 Aligned_cols=97 Identities=46% Similarity=0.702 Sum_probs=95.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
|+|||||+++|+|.||+||||||+||+|+||+|+|+|+.+|+.+||+ .|.++|| ||+||||+||||+|+.|++||+|
T Consensus 1 l~I~r~s~~s~~~~GG~ev~Ll~~k~~k~dikV~F~e~~~g~~~WE~~~~f~~~dv-~q~aiv~~tP~y~~~~i~~pV~V 79 (101)
T cd00602 1 LPICRVSSLSGSVNGGDEVFLLCDKVNKPDIKVWFGEKGPGETVWEAEAMFRQEDV-RQVAIVFKTPPYHNKWITRPVQV 79 (101)
T ss_pred CceEEEeCCeeEcCCCcEEEEEecCCCCCCCEEEEEecCCCCCeEEEEEEECHHHc-eEeEEEecCCCcCCCCccccEEE
Confidence 78999999999999999999999999999999999998779999999 9999999 99999999999999999999999
Q ss_pred EEEEEcCCC--CCCCccceeec
Q psy12708 300 KIQLVTKKD--ISEPYNFMLTP 319 (695)
Q Consensus 300 ~IqL~RpSD--tSEP~~FTY~P 319 (695)
+|||+|++| +|+|++|||+|
T Consensus 80 ~i~L~r~~~~~~S~~~~FtY~P 101 (101)
T cd00602 80 PIQLVRPDDRKRSEPLTFTYTP 101 (101)
T ss_pred EEEEEeCCCCeecCCcCeEEcC
Confidence 999999998 99999999998
No 17
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=98.59 E-value=3.6e-07 Score=75.76 Aligned_cols=86 Identities=29% Similarity=0.411 Sum_probs=68.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC-CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD-DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVK 300 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd-DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~ 300 (695)
+.|.+++..+|++.||.+|.|.|++|... +++|.|. |.. ... ...+ .+..|+|+||++.... +..|.
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~~~~v~~~----g~~--~c~--~~~~-~~~~i~C~~p~~~~~~---~~~v~ 68 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNLRVTFG----GGV--PCS--VLSV-SSTAIVCTTPPYANPG---PGPVE 68 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCCcEEEEEe----CCC--eEE--EEEe-cCCEEEEECCCCCCCC---cEEEE
Confidence 47899999999999999999999999986 6999996 111 111 1111 4567999999998765 78888
Q ss_pred EEEEcCC-C-CCCCccceeec
Q psy12708 301 IQLVTKK-D-ISEPYNFMLTP 319 (695)
Q Consensus 301 IqL~RpS-D-tSEP~~FTY~P 319 (695)
|++.+.. . .+.+..|+|+|
T Consensus 69 v~v~~~~~~~~~~~~~F~Y~~ 89 (89)
T cd00102 69 VTVDRGNGGITSSPLTFTYVP 89 (89)
T ss_pred EEEeCCCCcccCCCccEEeeC
Confidence 8888887 3 99999999986
No 18
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.59 E-value=4.4e-07 Score=76.53 Aligned_cols=87 Identities=25% Similarity=0.291 Sum_probs=66.9
Q ss_pred CceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceE
Q psy12708 221 DLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVH 298 (695)
Q Consensus 221 ELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~ 298 (695)
++.|.+++..+|++.||.+|.|.|.+|.. ...|.|... .|+. .+... .+..|+|+||+|....++.+|.
T Consensus 1 ~P~I~~i~P~~g~~~GGt~iti~G~nf~~-~~~~~~~~~-----~~~~~c~~~~~---~~~~i~C~tp~~~~~~~~~~v~ 71 (90)
T smart00429 1 DPVITRISPTSGPVSGGTEITLCGKNLDS-ISVVFVEVG-----VGEAPCTFLPS---SSTAIVCKTPPYHTIPGSVPVR 71 (90)
T ss_pred CCEEEEEccCcCcCCCCeEEEEeeecCCc-ceEEEEEEE-----eCCEEeEEeCC---cceEEEEECCCCCCCCCCcCeE
Confidence 47899999999999999999999999987 566666653 3654 44333 4678999999999988888883
Q ss_pred EEEEEEcCCC-CCCCccceee
Q psy12708 299 VKIQLVTKKD-ISEPYNFMLT 318 (695)
Q Consensus 299 V~IqL~RpSD-tSEP~~FTY~ 318 (695)
.+.+ +..+ .+++..|+|+
T Consensus 72 -~v~~-~~~~~~~~~~~f~y~ 90 (90)
T smart00429 72 -EVGL-RNGGVPSSPQPFTYV 90 (90)
T ss_pred -EEEE-eCCCccCcccCeEEC
Confidence 4444 3444 6778899995
No 19
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=97.88 E-value=4.1e-05 Score=68.03 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=64.8
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKI 301 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~I 301 (695)
+.|.++..+.|+.+||.||.|+|+||-. +.+|.|=.- ..|-. +-.+.+|+|.|||++. .-+|.|.+
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF~~-gl~V~FG~~----~~w~e------~isp~~i~~~tPP~~~---pG~V~Vtl 66 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNFFD-GLQVVFGTM----LVWSE------LITPHAIRVQTPPRHI---PGVVEVTL 66 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCCCC-CcEEEECCE----eEEEE------EeccceEEEecCCCCC---CceEEEEE
Confidence 3588999999999999999999999986 899999752 36763 3347799999999975 35666665
Q ss_pred EEEcCCC-CCCCccceee
Q psy12708 302 QLVTKKD-ISEPYNFMLT 318 (695)
Q Consensus 302 qL~RpSD-tSEP~~FTY~ 318 (695)
+-..+.= +-.|..|.|.
T Consensus 67 ~~~~~~~~~~~p~~f~y~ 84 (85)
T cd01175 67 SYKSKQFCKGTPGRFVYT 84 (85)
T ss_pred EECceeeccCCCceEEec
Confidence 5543333 8889999985
No 20
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=97.21 E-value=0.0015 Score=55.32 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=61.0
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC--CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD--DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd--DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
+.|.+++..+|+..||..|-|.|.+|... +++|.|-.. +..+... ....|+|.||+..... ..+|.|
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~-------~C~~~~~---~~~~i~C~~p~~~~~~-~~~v~v 69 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGV-------PCKVLNV---SSTEIVCRTPAAATPG-EGPVEV 69 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCE-------ECcEEec---CCCEEEEECCCCCCCC-cEeEEE
Confidence 46899999999999999999999999987 588888221 1111111 2334999999986654 345555
Q ss_pred EEEEEcCCC-CCCCccceeec
Q psy12708 300 KIQLVTKKD-ISEPYNFMLTP 319 (695)
Q Consensus 300 ~IqL~RpSD-tSEP~~FTY~P 319 (695)
.+....... .+.+..|+|.+
T Consensus 70 ~v~~~~~~~~~~~~~~F~Y~~ 90 (90)
T cd00603 70 TVDGANVSARVLSNTTFTYVE 90 (90)
T ss_pred EECCccccccccCCcceEEeC
Confidence 554443324 78899999974
No 21
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=96.44 E-value=0.0074 Score=49.29 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=56.0
Q ss_pred ceeEeecCcceeccCCceEEEeecCC--CCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKV--NKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKV--qKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
+.|..++..+|+..||.+|.|.|.+| ...+++|+|-...- .-.. +-....|.|++|++. ...+.|
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~----~~~~-----~~~~~~i~c~~p~~~----~~~~~v 67 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQC----TVIT-----VVSSTQITCTSPALP----SGNVNV 67 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEE----EEEG-----EEETTEEEEE--SCS----SEEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEee----eEEE-----EECCcEEEEEECCCC----CccEEE
Confidence 46888999999999999999999999 44567777754211 1000 334567999999998 334444
Q ss_pred EEEEEcCCC--CCCCcccee
Q psy12708 300 KIQLVTKKD--ISEPYNFML 317 (695)
Q Consensus 300 ~IqL~RpSD--tSEP~~FTY 317 (695)
+|..... ++.+..|+|
T Consensus 68 --~v~~~~~~~~~~~~~F~Y 85 (85)
T PF01833_consen 68 --SVTVNGQQIYSNNTSFTY 85 (85)
T ss_dssp --EEEETTSEEEEEEEEEEE
T ss_pred --EEEECCcCeEECCeeeEC
Confidence 4444443 999999998
No 22
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=95.74 E-value=0.084 Score=46.44 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC----CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCce
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD----DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPV 297 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd----DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV 297 (695)
+.|..++...|+..||..|-|.|+++... .++|.+-.. +-...+........|+|+||+-....-..+|
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~-------~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V 73 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGV-------PCNPEPPEYSSSEKIVCTTGPAGNPVFNGPV 73 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCE-------ECcccCCCcCcCCEEEEECCCCCCCCcceEE
Confidence 46899999999999999999999999874 233433210 0011111111224599999986543244445
Q ss_pred EEEEEEEcCC-CCCCCccceee
Q psy12708 298 HVKIQLVTKK-DISEPYNFMLT 318 (695)
Q Consensus 298 ~V~IqL~RpS-DtSEP~~FTY~ 318 (695)
.|.+ .... ..+....|+|.
T Consensus 74 ~V~v--~~~~~~~~~~~~F~Y~ 93 (94)
T cd01180 74 EVTV--GHGSFRTESSEGFSFV 93 (94)
T ss_pred EEEE--CCceecccccCceEEe
Confidence 4444 3222 25567889885
No 23
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=94.81 E-value=0.22 Score=42.78 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=52.8
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC-CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD-DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVK 300 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd-DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~ 300 (695)
+.|.+++...|+..||..|.|.|.+|.-. .+.|.|=.. +...... ....|+|.||+-.. ...+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~-------~C~~~~~---~~~~i~C~tp~~~~---~~~~~v~ 67 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQ-------PCKILSV---SSSQIVCLTPPSAS---PGEAPVK 67 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCCCeEEEEECCe-------EeeEEEe---cCCEEEEECCCCCC---CceEEEE
Confidence 46889999999999999999999999752 244433211 1111110 13359999998332 2345555
Q ss_pred EEEEcCCCCCCCccceee
Q psy12708 301 IQLVTKKDISEPYNFMLT 318 (695)
Q Consensus 301 IqL~RpSDtSEP~~FTY~ 318 (695)
|.+... ..+.+..|+|.
T Consensus 68 V~~d~~-~~~~~~~F~Y~ 84 (85)
T cd01179 68 VLIDGA-RRLAPLVFTYT 84 (85)
T ss_pred EEECCc-ccCCCccEEEe
Confidence 554322 35557899996
No 24
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=94.79 E-value=0.083 Score=48.38 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=56.6
Q ss_pred ccCCceEE---EeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCc---CCC--CCCCceEEEEEEEc
Q psy12708 234 VVGDMKMI---ILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAY---KSF--EINDPVHVKIQLVT 305 (695)
Q Consensus 234 V~GGeEVf---LLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPY---rd~--~It~PV~V~IqL~R 305 (695)
+.||-++- |.|+||.. +.||.|=. ||++ +.+-..=.|.|..|++ +.- -+++|++|-|.|.|
T Consensus 13 lnGggdvamlEl~GenF~p-nLkVWFG~-------veae---TmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisLVR 81 (97)
T cd01176 13 LNGGGDVAMLELHGENFTP-NLKVWFGD-------VEAE---TMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISLVR 81 (97)
T ss_pred EcCCCcEEEEEEecCcCCC-CceEEECC-------cceE---EEEEccceeEEecCCHHHhccCceEecCceEeeEEEEe
Confidence 45666554 67999987 89998875 7772 2223334589999987 222 38999999999999
Q ss_pred CCC--CCCCccceeec
Q psy12708 306 KKD--ISEPYNFMLTP 319 (695)
Q Consensus 306 pSD--tSEP~~FTY~P 319 (695)
... -+--+.|||+|
T Consensus 82 ~DGvIY~T~ltFtYtp 97 (97)
T cd01176 82 NDGIIYPTGLTFTYTP 97 (97)
T ss_pred cCCeEecCCceEEecC
Confidence 888 88889999998
No 25
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=89.92 E-value=2.2 Score=38.44 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=57.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCC-ceEE-EEEccCCccCceeeccccccccceeEEEeCCCcCCCC-----CC
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDD-IEVR-FYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFE-----IN 294 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdD-IkVr-F~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~-----It 294 (695)
+.|.+++...|...||--|-+.|.+++--. -+|+ ++++.. .. .-.+ .....|+|.||++.... ..
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~--~~-~C~v-----~s~~~i~C~tP~~~~~~~~~~~~~ 72 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVE--KT-SCKV-----RNSTLMTCPAPSLALLNRSPEPGE 72 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCce--ec-ccee-----CCCCEEEeCCCCCcccccccCCCC
Confidence 468999999999999999999999997521 0233 333210 01 1122 12245999999998753 57
Q ss_pred CceEEEEEEEcCCC--CCCCccceeec
Q psy12708 295 DPVHVKIQLVTKKD--ISEPYNFMLTP 319 (695)
Q Consensus 295 ~PV~V~IqL~RpSD--tSEP~~FTY~P 319 (695)
.|+.+.|-...-.. ...-..|.|+|
T Consensus 73 ~~~~~~fd~~~v~~~~~~~~~~f~y~p 99 (99)
T cd01181 73 RPVEFGLDGDNVQSLLILNRTSFSYYP 99 (99)
T ss_pred cCeEEEEeccchhhhhhccCCceEEeC
Confidence 77777766543221 22333699987
No 26
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=76.90 E-value=11 Score=33.09 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=56.8
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKI 301 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~I 301 (695)
+.|-.++...|.+ |.+|.|.|..|......|.|-...-.-..|.+ .-|+|+.|.- .+=...|
T Consensus 3 P~I~~i~P~~g~~--G~~VtI~G~gFg~~~~~V~~g~~~a~v~s~sd----------t~I~~~vP~~------~aG~~~V 64 (81)
T cd02849 3 PLIGHVGPMMGKA--GNTVTISGEGFGSAPGTVYFGTTAATVISWSD----------TRIVVTVPNV------PAGNYDV 64 (81)
T ss_pred CEEeeEcCCCCCC--CCEEEEEEECCCCCCcEEEECCEEeEEEEECC----------CEEEEEeCCC------CCceEEE
Confidence 6788888899887 88999999999865677866532222334543 3499999964 3456677
Q ss_pred EEEcCCC-CCCCcccee
Q psy12708 302 QLVTKKD-ISEPYNFML 317 (695)
Q Consensus 302 qL~RpSD-tSEP~~FTY 317 (695)
.+.++.. +|.+..|.|
T Consensus 65 ~V~~~~G~~Sn~~~f~~ 81 (81)
T cd02849 65 TVKTADGATSNGYNFEV 81 (81)
T ss_pred EEEeCCCcccCcEeeEC
Confidence 7777756 999988875
No 27
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=33.78 E-value=1.9e+02 Score=25.46 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=49.8
Q ss_pred eEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEEEEE
Q psy12708 224 IHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQL 303 (695)
Q Consensus 224 IcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL 303 (695)
|-.++...|. =|.+|.|.|..|..+..+|.|=...-.-..|.+ ..|.|++|.-- +=...|.+
T Consensus 3 I~~i~P~~g~--pG~~VtI~G~gFg~~~~~V~~g~~~a~v~s~sd----------t~I~~~VP~~~------~g~~~i~V 64 (81)
T cd00604 3 IGSVGPVMGK--PGNTVTISGEGFGSTGGTVYFGGTAAEVLSWSD----------TSIVVEVPRVA------PGNYNISV 64 (81)
T ss_pred EeeEcCCCCC--CCCEEEEEEECCCCCccEEEECCEEEEEEEECC----------CEEEEEeCCCC------CCceEEEE
Confidence 4455555555 488999999999876677755322222233432 45899998531 22334555
Q ss_pred EcCCC-CCCCccceeec
Q psy12708 304 VTKKD-ISEPYNFMLTP 319 (695)
Q Consensus 304 ~RpSD-tSEP~~FTY~P 319 (695)
.+... +|....|+|+.
T Consensus 65 ~~~~G~~Sn~~~f~~l~ 81 (81)
T cd00604 65 TTVDGVTSNGYNFEVLT 81 (81)
T ss_pred EECCCcccCcEeEEEcC
Confidence 56555 99999999973
No 28
>KOG1029|consensus
Probab=33.66 E-value=86 Score=38.54 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=18.1
Q ss_pred HHHHhhcccCCCCC--CCcccccccccc
Q psy12708 618 FHKLFFKSKSKSKP--ATPRERSLSIDS 643 (695)
Q Consensus 618 ~~~l~~~~~~~~~~--~~~~~~~~~~~~ 643 (695)
+..|||..+|.+.- ..++.|+.-+-|
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~qS 224 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQS 224 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHhc
Confidence 56788988886664 567777765544
No 29
>KOG0520|consensus
Probab=32.11 E-value=82 Score=39.27 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=64.4
Q ss_pred CCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeecc----ccccccceeEEEeCCCcCCCCCCC
Q psy12708 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVK----TLEVHKQYAIVLKTPAYKSFEIND 295 (695)
Q Consensus 220 sELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs----~tDVHrQ~AIVFKTPPYrd~~It~ 295 (695)
+-..||-+|...+...||.+|++.|- +++. .+..|.--|. |+++-+--.+-|-.|| -+
T Consensus 403 qlf~I~DfSP~Wsy~~ggvKVlV~G~----------~~~~--~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~------h~ 464 (975)
T KOG0520|consen 403 QLFTITDFSPEWSYLDGGVKVLVTGF----------PQDE--TRSNYSCMFGEQRVPAELIQEGVLRCYAPP------HE 464 (975)
T ss_pred ceeeeeccCcccccCCCCcEEEEecC----------cccc--CCCceEEEeCCccccHHHhhcceeeeecCc------cC
Confidence 34479999999999999999999996 3332 2346888554 4555555678888888 35
Q ss_pred ceEEEEEEEcC-CC--CCCCccceeecCCCC
Q psy12708 296 PVHVKIQLVTK-KD--ISEPYNFMLTPLDSG 323 (695)
Q Consensus 296 PV~V~IqL~Rp-SD--tSEP~~FTY~P~~~d 323 (695)
|=.|.|||.-. +. +|+-..|+|.+...-
T Consensus 465 ~G~V~l~V~c~~~~~~~se~ref~~~~~~~~ 495 (975)
T KOG0520|consen 465 PGVVNLQVTCRISGLACSEVREFAYLVQPSQ 495 (975)
T ss_pred CCeEEEEEEecccceeeeeehheeecccCcc
Confidence 67888999444 55 999999999986643
No 30
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=27.52 E-value=1.7e+02 Score=30.65 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=28.1
Q ss_pred cchhhhHHHHHHHHHHhhhhhhhHHhhccchhhccccccccchhhh
Q psy12708 413 DTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDEL 458 (695)
Q Consensus 413 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (695)
+.|.+ |+.|+-|++-|--++..+..-|.||= .++.-++.+..
T Consensus 42 s~q~~-ee~F~~l~~sV~~m~~~i~~~n~fl~---~~~~~~~~~~~ 83 (205)
T PF12238_consen 42 SGQSD-EEKFKSLFDSVPLMKHKISHMNAFLN---DWPPHMLEEGR 83 (205)
T ss_pred ccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc---cCchhhhhccH
Confidence 44544 77889999999888888888877654 33444443333
No 31
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=25.40 E-value=98 Score=30.44 Aligned_cols=45 Identities=18% Similarity=0.410 Sum_probs=35.6
Q ss_pred ceeEEEeCCCcCCCCCCCceEEEEEEEcCCC------CCCCccceeecCCCCC
Q psy12708 278 QYAIVLKTPAYKSFEINDPVHVKIQLVTKKD------ISEPYNFMLTPLDSGR 324 (695)
Q Consensus 278 Q~AIVFKTPPYrd~~It~PV~V~IqL~RpSD------tSEP~~FTY~P~~~d~ 324 (695)
-|.|-|-+ .||..=++|--|.+++..--. .-.++.|||.|.+.+-
T Consensus 41 eytItfls--~r~vqetQp~~vhi~v~d~~n~~fc~r~~K~v~Fty~Pens~f 91 (142)
T PF05660_consen 41 EYTITFLS--ARNVQETQPAVVHISVMDDANETFCPRVTKAVKFTYEPENSDF 91 (142)
T ss_pred ceEEEEEe--ccchhhcCCceEEEEEEecccccccccceeeeEEEECCccCCC
Confidence 47788877 677788899999999975433 4578999999999883
No 32
>KOG1924|consensus
Probab=23.87 E-value=2.1e+02 Score=35.63 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.5
Q ss_pred cccCCCCCCcceEE
Q psy12708 68 ANSTLECKSYPKIM 81 (695)
Q Consensus 68 asSt~~~KTfPTVK 81 (695)
-+|..++.-|||++
T Consensus 61 ~~ss~sn~d~pt~q 74 (1102)
T KOG1924|consen 61 RSSSASNNDYPTAQ 74 (1102)
T ss_pred CCccccccCCcccc
Confidence 56666778899876
No 33
>KOG3895|consensus
Probab=22.73 E-value=2.6e+02 Score=31.98 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q psy12708 550 PASKVTTPPPRPPSHTKPN 568 (695)
Q Consensus 550 ~~~~~~~~~~~p~~~~~~~ 568 (695)
++++....|||||+..-|-
T Consensus 422 ~~~pt~~~PprPppqggpp 440 (488)
T KOG3895|consen 422 QASPTRRLPPRPPPQGGPP 440 (488)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 3444444589999987663
No 34
>KOG1924|consensus
Probab=21.04 E-value=2.1e+02 Score=35.49 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.7
Q ss_pred HHhhCc
Q psy12708 498 LAMKNQ 503 (695)
Q Consensus 498 ~a~kn~ 503 (695)
+|++-|
T Consensus 512 ~al~s~ 517 (1102)
T KOG1924|consen 512 QALSSP 517 (1102)
T ss_pred hhccCc
Confidence 344444
Done!