Query psy12708
Match_columns 695
No_of_seqs 131 out of 229
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 17:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ikn_A P65, protein (NF-kappa- 100.0 2E-106 7E-111 821.3 31.6 277 39-333 1-286 (286)
2 1nfk_A Protein (nuclear factor 100.0 1E-106 3E-111 834.8 29.4 294 38-333 1-325 (325)
3 1svc_P Protein (nuclear factor 100.0 2E-106 7E-111 841.6 27.3 299 33-333 36-365 (365)
4 1gji_A C-REL protein, C-REL pr 100.0 4E-104 1E-108 800.8 28.4 266 39-320 1-275 (275)
5 1a3q_A Protein (nuclear factor 100.0 1E-102 4E-107 793.5 31.0 274 38-319 1-285 (285)
6 2v2t_A RELB, transcription fac 100.0 5E-102 2E-106 789.7 22.6 269 34-320 8-288 (288)
7 2o61_A Transcription factor P6 100.0 4.8E-98 2E-102 809.4 30.6 272 38-327 1-281 (540)
8 1imh_C NF-AT5, tonebp, nuclear 100.0 1.2E-90 4E-95 704.3 27.5 257 30-320 8-281 (281)
9 1p7h_L Nuclear factor of activ 100.0 8.9E-89 3E-93 691.9 26.2 256 30-319 7-285 (286)
10 1bvo_A Transcription factor ga 100.0 3.7E-68 1.3E-72 509.4 18.2 167 39-217 1-175 (175)
11 1ikn_C P50D, protein (NF-kappa 100.0 6.1E-46 2.1E-50 337.9 12.9 115 219-333 1-119 (119)
12 1oy3_C Transcription factor P6 100.0 1.1E-45 3.8E-50 342.4 14.3 126 219-355 1-131 (136)
13 1my7_A NF-kappab P65 (RELA) su 100.0 5.8E-45 2E-49 329.5 13.0 110 219-333 1-114 (114)
14 1u36_A DNA-binding, nuclear fa 100.0 1.7E-43 5.9E-48 316.3 12.6 102 219-320 1-106 (106)
15 1zk9_A Transcription factor RE 100.0 2E-42 6.9E-47 311.3 6.5 101 215-320 4-110 (110)
16 2yrp_A Nuclear factor of activ 100.0 7.8E-38 2.7E-42 283.0 12.7 101 218-320 5-109 (114)
17 3muj_A Transcription factor CO 96.7 0.0063 2.2E-07 57.3 8.9 87 221-323 5-94 (138)
18 2cxk_A Camta1, calmodulin bind 96.4 0.013 4.4E-07 51.3 8.7 83 219-320 4-91 (95)
19 3mlp_A Transcription factor CO 96.0 0.023 7.8E-07 60.5 9.7 86 221-322 231-319 (402)
20 3iag_C Recombining binding pro 85.8 0.76 2.6E-05 49.8 5.3 75 235-320 337-421 (422)
21 1uad_C RSEC5, exocyst complex 83.5 3.6 0.00012 35.7 7.7 85 220-318 6-93 (99)
22 2uzx_B Hepatocyte growth facto 77.5 2.5 8.5E-05 48.1 5.8 87 220-318 540-634 (727)
23 3hrp_A Uncharacterized protein 43.9 40 0.0014 34.4 6.8 81 222-320 18-105 (409)
24 3tc9_A Hypothetical hydrolase; 42.4 24 0.00083 36.5 4.9 84 222-320 18-106 (430)
25 4hw6_A Hypothetical protein, I 26.6 64 0.0022 33.6 5.0 82 222-320 20-108 (433)
26 2uzx_B Hepatocyte growth facto 20.9 22 0.00075 40.5 0.2 61 220-290 634-695 (727)
No 1
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=100.00 E-value=2e-106 Score=821.35 Aligned_cols=277 Identities=43% Similarity=0.724 Sum_probs=266.4
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|+|||+|+|+|||||+||||+ |++
T Consensus 1 P~l~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~rpHpH~LvGk~-c~~ 79 (286)
T 1ikn_A 1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKD-CRD 79 (286)
T ss_dssp CEEEEEECBCCSSCCCEETTTCSCSCCCCBTTCCSSCCCCCEEEEESCCSSCEEEEEEECSSSSCCBCSSEEESTT-EET
T ss_pred CCCEEEECCccccceeEEeecccCCCCccccccCCCCCcCCEEEEecCCCCEEEEEEEEECCCCCCCcceEeeccc-CCC
Confidence 899999999997 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC-cCCCCCCeeeEEEEEEe
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN-RDNLDLNAVRLCFQAYL 195 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~-aK~iDLn~VRLcFqafL 195 (695)
|+|++.|+|++|+++|+||||||+||+||+ +|++|.+.+++||++ |+++ +++||||+|||||||||
T Consensus 80 g~~~v~l~p~~~~~~f~~lGI~~vkkkdv~~~l~~R~~~~~~p~~~------------~~~~~~k~idln~VRL~Fq~~i 147 (286)
T 1ikn_A 80 GYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHV------------PIEEQRGDYDLNAVRLCFQVTV 147 (286)
T ss_dssp TEEEEECCTTCSEEECSCCEEEECCGGGHHHHHHHHHHTTCCTTCC------------CTTSCCSCCCTTEEEEEEEEEE
T ss_pred CcEEEEECCCcceEEEeccceeeEeeccHHHHHHHHHHhcCCcccc------------chhhhhccccCcEEEEEEEEEE
Confidence 999999999999999999999999999999 999999999999987 5554 78999999999999999
Q ss_pred eCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--ecc
Q psy12708 196 PKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVK 271 (695)
Q Consensus 196 pd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs 271 (695)
++++|++++|+||+|+||||+|+ ++||+|||||++||||+||+|||||||||+|+||+|||||+ +||+ +|+
T Consensus 148 ~~~~G~~~~L~pV~S~PI~~~ks~~~~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e~-----~WE~~~~f~ 222 (286)
T 1ikn_A 148 RDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFS 222 (286)
T ss_dssp ECSSSSEEECCCEECCCEECCCC--CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEET-----TEEEECBCC
T ss_pred ECCCCCEEEeCCeEecccccCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEecc-----ceEEeeecC
Confidence 99999999999999999999997 59999999999999999999999999999999999999994 7999 999
Q ss_pred ccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecCCCCChhhhHhhhh
Q psy12708 272 TLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIFWRYRKN 333 (695)
Q Consensus 272 ~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i~rkrr~ 333 (695)
++||||||||||+||||+|++|++||+|+|||+|+|| +|+|++|||+|.+.|.++|.|||||
T Consensus 223 ~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~~Sep~~FtY~P~~~~~~~~~~kr~r 286 (286)
T 1ikn_A 223 QADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR 286 (286)
T ss_dssp GGGBCTTSEEEEECCCCSCTTCSSCEEEEEEEECTTTCCBCCCEEEEEECCTTTTTTSCSCC--
T ss_pred HHHhccceeEEEECCCCCCCCcCCCEEEEEEEEeCCCCCcCCCcCcEEecCccchhhhhhcccC
Confidence 9999999999999999999999999999999999999 9999999999999999999888764
No 2
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=100.00 E-value=1e-106 Score=834.76 Aligned_cols=294 Identities=40% Similarity=0.672 Sum_probs=256.0
Q ss_pred CceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCC
Q psy12708 38 RPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCT 116 (695)
Q Consensus 38 ~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ck 116 (695)
+|||+|+|||++| |||||+|||+|||||+|++|++++||||+|||+||+|+|+|+|+|||+|+|+|||||+||||+ |+
T Consensus 1 gP~L~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pH~H~LvGk~-c~ 79 (325)
T 1nfk_A 1 GPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKH-CE 79 (325)
T ss_dssp CCEEEESSCBCSSSCCCBCGGGCCCSSCCCBTTCCTTSCCCCEEEEETCCSSCEEEEEEECSSSSCCBCSSEEESTT-EE
T ss_pred CCccEEEECCccccceeEEeeccCCCCCccccccCCCCCcCCEEEEecCCCcEEEEEEEEEcCCCCCccceeeeccc-cC
Confidence 6999999999998 999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred CCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHH-hhcCCCCcccc---------------c------hhhhhcc
Q psy12708 117 NGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQ-FCQRPFNSEKN---------------S------AWTLLGV 173 (695)
Q Consensus 117 dGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rke-l~~dPf~t~~n---------------~------~~~l~~d 173 (695)
+|+|+|.|+|++|+|+|+|||||||||+||+ +|+.|+. ...+||++.-. . .+.|.++
T Consensus 80 ~gv~~v~v~p~~m~~~f~nlGI~~v~kkdv~~~L~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~i~~~ 159 (325)
T 1nfk_A 80 DGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQA 159 (325)
T ss_dssp TTEEEEECCSSCCEEECCSCEEECCCSTTHHHHHHHHHHHHHHTTSCCCCCCCTTCSCCCCSSSSCCCCCHHHHHHHHHH
T ss_pred CccEEEEeCCCCceEEecccccEEEeechHHHHHHHHHHhhcccccccCccccccccccccccccccccchhhhhhhHHH
Confidence 9999999999999999999999999999999 8887753 35678775210 0 0111111
Q ss_pred cCcCCcCCCCCCeeeEEEEEEeeCCCCC-eEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCC
Q psy12708 174 MGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKD 250 (695)
Q Consensus 174 ig~e~aK~iDLn~VRLcFqafLpd~~G~-t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKd 250 (695)
+ .+++++||||+|||||||||++++|+ +++|+||+|+||||+|+ +++|+|||||++||||+||+|||||||||+|+
T Consensus 160 a-k~~~k~~dln~VRL~Fq~fl~~~~G~~t~~l~pV~S~PI~d~k~~~a~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~ 238 (325)
T 1nfk_A 160 A-VQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD 238 (325)
T ss_dssp H-HHHHHTCCTTEEEEEEEEEEECSSSCEEEECCCEECCCEECTTSTTSCCCCEEEESCSCEESSCCCEEEEEESCCCTT
T ss_pred H-HhhhhcccCceEEEEEEEEEECCCCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccC
Confidence 0 11268999999999999999999999 78999999999999997 69999999999999999999999999999999
Q ss_pred CceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecCCCCChh
Q psy12708 251 DIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRPI 326 (695)
Q Consensus 251 DIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~ 326 (695)
||+|||||+++++.+||+ +|+++||||||||||+||||+|++|++||+|+|||+|+|| +|+|++|||+|...|.++
T Consensus 239 Di~VrF~E~~~~g~~WE~~g~f~~~Dvh~Q~AIvfkTPpY~~~~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P~~~d~~~ 318 (325)
T 1nfk_A 239 DIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEE 318 (325)
T ss_dssp TEEEEEEECCCSSCCEEEECBCCGGGBCTTSEEEEECCCTTSSCCCSSEEEEEEEEETTTCCBCCCEEEEEECC------
T ss_pred CCEEEEEEeCCCCCeeEEeeeeCHHHccceeEEEEECCCCCCCCcCCCeEEEEEEEcCCCCCccCCccceeecCccChhH
Confidence 999999997544449999 9999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhHhhhh
Q psy12708 327 FWRYRKN 333 (695)
Q Consensus 327 i~rkrr~ 333 (695)
+.|||||
T Consensus 319 ~~rKr~k 325 (325)
T 1nfk_A 319 VQRKRQK 325 (325)
T ss_dssp -------
T ss_pred HhhccCC
Confidence 9998875
No 3
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=2e-106 Score=841.59 Aligned_cols=299 Identities=40% Similarity=0.660 Sum_probs=256.5
Q ss_pred ccCCCCceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCcccccccc
Q psy12708 33 LDASRRPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVS 111 (695)
Q Consensus 33 l~~~~~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVG 111 (695)
++...+|||+|+|||++| |||||+|||+|||||+|++|++++||||+|||+||+|+|+|+|+|||+|+++|||||+|||
T Consensus 36 ~~~~~~p~L~I~eQPkqr~~RfRYe~EG~s~Gsi~G~~S~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pHpH~LvG 115 (365)
T 1svc_P 36 LPTADGPYLQILEQPKQRGFRFRYVAEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVG 115 (365)
T ss_dssp ------CEEEEEECBCSBSCCCEEGGGCSTTCCCCBSCCCTTCCCCCEEEEESCCSSCEEEEEEECCSSSCCBCSSEEEE
T ss_pred CCCCCCceEEEEECCccccceeEEeeccCCCCCccccccCCcCCcCCEEEEecCCCCEEEEEEEEEcCCCCCccceEecc
Confidence 566789999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHH-HhhcCCCCccc-----cc----------------hh
Q psy12708 112 KDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYL-QFCQRPFNSEK-----NS----------------AW 168 (695)
Q Consensus 112 Kd~CkdGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rk-el~~dPf~t~~-----n~----------------~~ 168 (695)
|+ |++|+|+|.|+|++|+|+|+||||||||||||+ +|+.|. +.+.+||++.- .+ .+
T Consensus 116 K~-c~~gv~~v~v~P~~m~~~f~nlGI~~vrkkdv~~~L~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~t~~e~~ 194 (365)
T 1svc_P 116 KH-CEDGICTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHPDLAYLQAEGGGDRQLGDREKE 194 (365)
T ss_dssp TT-EETTEEEEECCTTCCEEECCSEEEEECCGGGHHHHHHHHHHHHHHHTSSHHHHTCGGGGGGTTCCCTTTTCCHHHHH
T ss_pred cc-CCCccEEEEeCCCCceEEecccceEEEeechHHHHHHHHHHHhccccccccccccccccccccccccccccchhhhh
Confidence 96 999999999999999999999999999999999 888883 55778887521 00 01
Q ss_pred hhhcccCcCCcCCCCCCeeeEEEEEEeeCCCCC-eEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeec
Q psy12708 169 TLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCD 245 (695)
Q Consensus 169 ~l~~dig~e~aK~iDLn~VRLcFqafLpd~~G~-t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCd 245 (695)
.+.+++ .+.+++||||+|||||||||++++|+ +++|+||+|+||||+|+ +++|+|||||++||||+||+|||||||
T Consensus 195 ~~~~~a-k~~~k~~dLn~VRL~Fqafl~~~~G~~t~~l~pV~S~PI~d~K~~~a~eL~I~R~s~~sgsv~GG~Ev~LLc~ 273 (365)
T 1svc_P 195 LIRQAA-LQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCD 273 (365)
T ss_dssp HHHHHH-HHHHTTCCTTEEEEEEEEEEECSSSCEEEECCCEEEEEEECTTSGGGCCCCEEEESCSEEETTCCCEEEEEES
T ss_pred hhhHHH-HhhhhcccCceEEEEEEEEEECCCCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEec
Confidence 111111 11268999999999999999999999 78999999999999997 699999999999999999999999999
Q ss_pred CCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecCC
Q psy12708 246 KVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLD 321 (695)
Q Consensus 246 KVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~~ 321 (695)
||+|+||+|||||+++++.+||+ +|+++||||||||||+||||+|++|++||+|+|||+|+|| +|+|++|||+|..
T Consensus 274 Kv~K~DikVrF~E~~~~g~~WE~~g~f~~~DVH~Q~AIvfkTPpY~~~~I~~pV~V~iqL~R~sd~~~Sep~~FtY~P~~ 353 (365)
T 1svc_P 274 KVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDINITKPASVFVQLRRKSDLETSEPKPFLYYPEI 353 (365)
T ss_dssp SCCGGGCEEEEEEEETTTEEEEEECBCCGGGEETTTEEEEECCCCSCSCCSSCEEEEEEEECTTTCCBCCCEEEEEECC-
T ss_pred ccccCCCEEEEEEeCCCCCeeEEeeeeChHHhcceeeEEEECCCCCCCCcCCCeEEEEEEEcCCCCCccCCccceeecCc
Confidence 99999999999998544449999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred CCChhhhHhhhh
Q psy12708 322 SGRPIFWRYRKN 333 (695)
Q Consensus 322 ~d~~~i~rkrr~ 333 (695)
.|.+++.|||||
T Consensus 354 ~d~~~~~rKr~k 365 (365)
T 1svc_P 354 KDKEEVQRKRQK 365 (365)
T ss_dssp ------------
T ss_pred cChhHHhhccCC
Confidence 999999998875
No 4
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=4e-104 Score=800.84 Aligned_cols=266 Identities=45% Similarity=0.825 Sum_probs=253.1
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN 117 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd 117 (695)
|||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|+|||+|+|++||||+||||+ |++
T Consensus 1 P~l~I~eQP~q~~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtV~l~~y~g~a~i~vslvt~d~p~~pHpH~LvGk~-c~~ 79 (275)
T 1gji_A 1 PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVTKNEPYKPHPHDLVGKD-CRD 79 (275)
T ss_dssp CEEEEEECBCCSSBCCEEGGGCSCCCCCCBSSCCSTTCCCCEEEEETCCSCEEEEEEEECSSSSCCBCSSEEESTT-EET
T ss_pred CCCEEEECCccccceeEEeeccccCCCccccccCCCCCcCCEEEEecCCCCEEEEEEEEEeCCCCCcceeEecccc-CCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999996 999
Q ss_pred CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCCcCCCCCCeeeEEEEEEee
Q psy12708 118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLP 196 (695)
Q Consensus 118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~aK~iDLn~VRLcFqafLp 196 (695)
|+|+|.|+|++|+++|+||||||+|||||+ +|+.|++++++||++... ...++++||||+|||||||||+
T Consensus 80 g~~~v~v~p~~~~~~f~~lGI~~vrkkdv~~~l~~r~~~~~~p~~~~~~---------~~~~~~~~dln~VRL~Fq~fi~ 150 (275)
T 1gji_A 80 GYYEAEFGPERRVLSFQNLGIQCVKKKDLKESISLRISKKINPFNVPEE---------QLHNIDEYDLNVVRLCFQAFLP 150 (275)
T ss_dssp TEEEEEECSCCSCEECCCCEEEECCTTTHHHHHHHHHTTTCCTTCCCGG---------GGGCCTTCCTTEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeeeeeEEEeehhHHHHHHHHHhhccCCcCCCHH---------HhhhhhhccCceEEEEEEEEEE
Confidence 999999999999999999999999999999 999999899999987211 1123689999999999999999
Q ss_pred CCCCC-eEeeccccccccccCCCC--CCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--ecc
Q psy12708 197 KDKDN-VIKLEPVVSDIIYDAKTY--SDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVK 271 (695)
Q Consensus 197 d~~G~-t~~L~PVvS~PIyDsKsa--sELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs 271 (695)
+++|+ +.+|.||+|+||||+||+ ++|+|||||++||||+||+|||||||||+|+||+|||||+ .||+ +|+
T Consensus 151 ~~~G~~~~~l~pV~S~pI~d~ks~~~~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~di~VrF~e~-----~We~~~~f~ 225 (275)
T 1gji_A 151 DEHGNYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLD-----NWEAKGSFS 225 (275)
T ss_dssp CSSSSEEEECCCEECCCEEBTTSTTTSCCCEEEESCSEEETTCCCEEEEEESCCCGGGCEEEEEET-----TEEEECBCC
T ss_pred CCCCCCccccCCeEccccccCCCCCCCCCEEEEeeCCccccCCCCEEEEEecccccCCCEEEEEcc-----ceeeccccC
Confidence 99999 578999999999999985 9999999999999999999999999999999999999995 6999 899
Q ss_pred ccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecC
Q psy12708 272 TLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPL 320 (695)
Q Consensus 272 ~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~ 320 (695)
++||||||||||+||||++ +|++||+|+|||+|+|| +|+|++|||+|.
T Consensus 226 ~~Dvh~Q~AIvf~TPpY~~-~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P~ 275 (275)
T 1gji_A 226 QADVHRQVAIVFRTPPFLR-DITEPITVKMQLRRPSDQEVSEPMDFRYLPD 275 (275)
T ss_dssp GGGEETTTEEEEECCCCSS-CCSSCEEEEEEEEEGGGTEECCCEEEEEECC
T ss_pred hhhhcceeeEEEeCCCCCc-CCCCCEEEEEEEEcCCCCCccCCcCcEEcCC
Confidence 9999999999999999999 99999999999999999 999999999994
No 5
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=100.00 E-value=1.1e-102 Score=793.52 Aligned_cols=274 Identities=39% Similarity=0.633 Sum_probs=249.6
Q ss_pred CceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCC
Q psy12708 38 RPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCT 116 (695)
Q Consensus 38 ~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ck 116 (695)
+|||+|+|||++| |||||+|||+|||||+|++|++++||||+|||+||+|+|+|+|+|||+|+++|||||+||||++|+
T Consensus 1 gP~l~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~v~v~lvT~d~~~rpHpH~LvGk~c~~ 80 (285)
T 1a3q_A 1 GPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVTHSDPPRAHAHSLVGKQCSE 80 (285)
T ss_dssp CCEEEEEECBCSSSBCCEETTTCSCSCCCCBSCCCTTCCCCCEEEEETCCSSEEEEEEEECSSSSCCBCSSEEEETTBCT
T ss_pred CCccEEEECCccccceeEEeeccCCCCCCcccccCCCCCcCCEEEEeCCCCcEEEEEEEEecCCCCCccceEeeCccccc
Confidence 6999999999998 999999999999999999999999999999999999999999999999999999999999998559
Q ss_pred CCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHh-hcCCCCccccc--hhhhhcccCcCCcCCCCCCeeeEEEE
Q psy12708 117 NGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQF-CQRPFNSEKNS--AWTLLGVMGFNNRDNLDLNAVRLCFQ 192 (695)
Q Consensus 117 dGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel-~~dPf~t~~n~--~~~l~~dig~e~aK~iDLn~VRLcFq 192 (695)
+|+|+|.|+|++|+++|+||||||+|||||+ +|++|++. +.+||++.-.. .+.|..++ .+.+++||||+||||||
T Consensus 81 ~gv~~v~~~p~~m~~~f~~lGI~~v~kkdv~~~l~~R~~~~~~~~~~~~~~~~~~~~l~~~a-~~~~k~~dln~VRL~Fq 159 (285)
T 1a3q_A 81 LGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKLQRQRLRSRPQGLTEAEQRELEQEA-KELKKVMDLSIVRLRFS 159 (285)
T ss_dssp TSCEEEEECSSCCEEECCCEEEEECCTTTHHHHHHHHHHHHHTTTSCSCCCHHHHHHHHHHH-HHHHTTCCTTEEEEEEE
T ss_pred CceEEEEeCCCCcEEEEcccceEEeeechHHHHHHHHHhhhcccccCCCCCchhhhhhhHHh-hhhhhccccCeEEEEEE
Confidence 9999999999999999999999999999998 88887644 57788762110 11121111 11258999999999999
Q ss_pred EEeeCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--
Q psy12708 193 AYLPKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE-- 268 (695)
Q Consensus 193 afLpd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa-- 268 (695)
|||+ +++|.||+|+||||+|+ ++||+|||||++||||+||+|||||||||+|+||+|||||+++++ ||+
T Consensus 160 ~fi~-----t~~l~pV~S~pI~d~k~~~~~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~Di~V~F~E~~~~g--WE~~~ 232 (285)
T 1a3q_A 160 AFLR-----SLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDENG--WQAFG 232 (285)
T ss_dssp EEEC-----CEECCCEECCCEEBTTSTTTSCCCEEEESCSEEETTCCCEEEEEESSCCTTTEEEEEEECSSSC--EEEEC
T ss_pred EEec-----ccccCceEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEeccccCCCCEEEEEecCCCC--CEEee
Confidence 9999 57899999999999997 689999999999999999999999999999999999999986554 999
Q ss_pred eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeec
Q psy12708 269 RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTP 319 (695)
Q Consensus 269 ~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P 319 (695)
+|+++||||||||||+||||+|++|++||+|+|||+|+|| +|+|++|||+|
T Consensus 233 ~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P 285 (285)
T 1a3q_A 233 DFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYP 285 (285)
T ss_dssp BCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEEETTTCCBCCCEEEEEEC
T ss_pred EeCHHHccceeeEEEECCCCCCCCCCCCeEEEEEEEeCCCCCccCCCCceeCC
Confidence 9999999999999999999999999999999999999999 99999999998
No 6
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=100.00 E-value=4.9e-102 Score=789.71 Aligned_cols=269 Identities=43% Similarity=0.750 Sum_probs=253.7
Q ss_pred cCCCCceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEE--EEEecCCCCCccccccc
Q psy12708 34 DASRRPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVV--SCVSKDSPYRSHPHKLV 110 (695)
Q Consensus 34 ~~~~~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvV--sLVTkDdp~RPHPH~LV 110 (695)
....+|||+|+|||++| |||||+|||+|||||+|++|++++||||+|||+||+|+|.|+| +|||+|+|+|||||+||
T Consensus 8 ~~~~~p~L~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~gy~g~~~v~V~~~lvt~d~p~rpHpH~Lv 87 (288)
T 2v2t_A 8 GPCPRPYLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTQPAIELRDCGGLREVEVTACLVWKDWPHRVHPHSLV 87 (288)
T ss_dssp --CCCCEEEESSCBCSSCCCCEEGGGCCCSCCCCBSSCCTTSCCCCCEEEESCTTCSCEEEEECCBCSSSSCCBCSSEEE
T ss_pred CCCCCCeEEEEECCCcCcceeEEeecCCCCccccccccCCCCCcCCEEEEeccCCCceEEEEEEEEEcCCCCCcCceEec
Confidence 34578999999999998 9999999999999999999999999999999999999986655 36999999999999999
Q ss_pred cccCCCCCcEEEEecCC-CeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCc-CCcCCCCCCee
Q psy12708 111 SKDNCTNGIFCATLLEG-DMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGF-NNRDNLDLNAV 187 (695)
Q Consensus 111 GKd~CkdGVceV~L~P~-dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~-e~aK~iDLn~V 187 (695)
||+ |++|||+|.|+|+ +|+++|+||||||+|||||+ +|++|++++++||++ |+ +.+++||||+|
T Consensus 88 Gk~-c~~gv~~v~l~p~~~~~~~f~~lGI~~vrkkdve~~L~~r~~~~~~p~~~------------~~~~~~~~idln~V 154 (288)
T 2v2t_A 88 GKD-CTDGVCRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIERKIQLGIDPYNA------------GSLKNHQEVDMNVV 154 (288)
T ss_dssp STT-CSSSCEEEEECTTTCSCCCCSSCEEEECCTTTHHHHHHHHHHTTCCSSCC------------CSSCCCSSCCSSEE
T ss_pred Ccc-CCCceEEEEeCCCCCcEEEEeeeeeEEEEehhHHHHHHHHHHhccCcccc------------cccccccccCCCeE
Confidence 996 9999999999996 79999999999999999999 999999999999998 43 23578999999
Q ss_pred eEEEEEEeeCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccC
Q psy12708 188 RLCFQAYLPKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVV 265 (695)
Q Consensus 188 RLcFqafLpd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~i 265 (695)
||||||||++++|++.+|.||+|+||||+|| ++||+|||||++||||+||+|||||||||+|+||+||||| .+
T Consensus 155 RL~Fq~~i~~~~G~~~~l~pV~S~PI~~~ks~~~~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~dikV~F~e-----~~ 229 (288)
T 2v2t_A 155 RICFQASYRDQQGHLHRMDPILSEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFST-----AS 229 (288)
T ss_dssp BCCBCEEECCSSSCCEECCCBCCCCEECTTSGGGSCCCBCCCSCSCCCSSCCCEEEEEBSSCCTTSEEEEEEC-----SS
T ss_pred EEEEEEEEECCCCCEEEeCCeEecccccCCCCCCCCCeEEEeeCCccccCCCCEEEEEecccccCCCEEEEEe-----cc
Confidence 9999999999999988899999999999998 4999999999999999999999999999999999999998 58
Q ss_pred cee--eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecC
Q psy12708 266 WDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPL 320 (695)
Q Consensus 266 WEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~ 320 (695)
||+ +|+++||||||||||+||||+|++|++||+|+|||+|++| +|+|++|||+|.
T Consensus 230 WE~~~~f~~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P~ 288 (288)
T 2v2t_A 230 WEGRADFSQADVHRQIAIVFKTPPYEDLEISEPVTVNVFLQRLTDGVCSEPLPFTYLPR 288 (288)
T ss_dssp CEEECCCCGGGEETTTEEEEECCCCTTCCCSSCCBCCEEEEETTTCCBCCCBCCBCCCC
T ss_pred eEEeeEeChhhccceeEEEEECCCCCCCCcCCCeEEEEEEEeCCCCCcCCCcCcEEcCC
Confidence 999 9999999999999999999999999999999999999998 999999999995
No 7
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-98 Score=809.43 Aligned_cols=272 Identities=42% Similarity=0.715 Sum_probs=256.2
Q ss_pred CceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCC
Q psy12708 38 RPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCT 116 (695)
Q Consensus 38 ~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ck 116 (695)
.|||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|+|||+|++++||||+||||+ |+
T Consensus 1 ~p~l~I~eQP~~~~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~~pH~H~LvGk~-c~ 79 (540)
T 2o61_A 1 MGYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKD-CR 79 (540)
T ss_dssp -CEEEEEECBCCSSCCCEETTTCSCCCCCCBTTCCSSCCCCCEEEEETCCSSCEEEEEEECSSSSCCBCSSEEESTT-EE
T ss_pred CCCCEEEECCCCCcceeEeecCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCEEEEEEEEECCCCCCCcceEeeccc-CC
Confidence 3899999999999 999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred CCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC-cCCCCCCeeeEEEEEE
Q psy12708 117 NGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN-RDNLDLNAVRLCFQAY 194 (695)
Q Consensus 117 dGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~-aK~iDLn~VRLcFqaf 194 (695)
+|+|+|.|+|++|+++|+|||||||||+||+ +|+.|.+.+++||.+ |+++ +++||||+||||||||
T Consensus 80 ~g~~~v~l~p~~~~~~f~nlGI~~vkkkdv~~~L~~R~~~~~~p~~~------------~~~~~~~~~dln~VRL~Fq~f 147 (540)
T 2o61_A 80 DGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQV------------PIEEQRGDYDLNAVRLCFQVT 147 (540)
T ss_dssp TTEEEEECCTTCSEEECCCCEEEECCGGGHHHHHHHHHHTTCCTTCC------------CTTTTCSCCCTTEEEEEEEEE
T ss_pred CCcEEEEeCCCcceEEEeccceeeeccccHHHHHHHHHhhcCCcccc------------chhhhhccccCcEEEEEEEEE
Confidence 9999999999999999999999999999999 899999999999987 5544 6899999999999999
Q ss_pred eeCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--ec
Q psy12708 195 LPKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RV 270 (695)
Q Consensus 195 Lpd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~F 270 (695)
|++++|++++|+||+|+||||+|+ ++||+|||||++||||+||+|||||||||+|+||+|||||+ +||+ +|
T Consensus 148 i~~~~G~~~~L~pV~S~PI~d~k~~~~~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~DikVrF~e~-----~WE~~a~f 222 (540)
T 2o61_A 148 VRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSF 222 (540)
T ss_dssp EESSSSSEEECCCEECCCEECSSSTTSSCCCEEEESCSEEETTCCCEEEEEESSCBTTBCEEEEEET-----TEEEECBC
T ss_pred EECCCCCEEecCCeeccceecCCCCCCCCCeEEEecCCccccCCCCeEEEEecccccCCcEEEEecc-----cceecccc
Confidence 999999999999999999999997 68999999999999999999999999999999999999984 7999 99
Q ss_pred cccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecCCCCChhh
Q psy12708 271 KTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIF 327 (695)
Q Consensus 271 s~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i 327 (695)
+++||||||||||+||||+|++|++||+|+|||+|+|| +|+|++|||+|.+.+..+.
T Consensus 223 ~~~Dvh~Q~AIvfkTPpY~~~~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P~~~~~~~~ 281 (540)
T 2o61_A 223 SQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDGSLSSGS 281 (540)
T ss_dssp CGGGEETTTEEEEECCCCSSSCCSSCEEEEEEEECGGGCCBCCCEEEEEECC-------
T ss_pred ChhhhcceeeEEEeCCCCCCCCCCCCeEEEEEEEeCCCCCcCCCcCcEEecCCCCcccc
Confidence 99999999999999999999999999999999999999 9999999999999887665
No 8
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=100.00 E-value=1.2e-90 Score=704.33 Aligned_cols=257 Identities=21% Similarity=0.297 Sum_probs=233.2
Q ss_pred cccccCCCCceEEEEecCCcccccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCcccc--
Q psy12708 30 QSRLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPH-- 107 (695)
Q Consensus 30 ~s~l~~~~~PyL~IvEQPkqrfRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH-- 107 (695)
|..+...++|||+|+|||++||||||+||| |||||+|+ ++||||||||+||+|+|+|+|+|+|+|++++||||
T Consensus 8 ~~~p~~~~~p~l~I~eQP~~~~RfRY~~EG-S~Gsi~g~----~~kt~PtVkl~gy~g~a~v~v~~~t~d~~~~pH~h~~ 82 (281)
T 1imh_C 8 GQYPVKSEGKELKIVVQPETQHRARYLTEG-SRGSVKDR----TQQGFPTVKLEGHNEPVVLQVFVGNDSGRVKPHGFYQ 82 (281)
T ss_dssp SCCCSEETTEEEEEEECBCSBCCCEETTSC-CCCCCCBT----TSSSCCEEEEESCCSCEEEEEEEEESSSSCCBCSSEE
T ss_pred ccCCccCCCceEEEEeCCchhceEEEecCC-CCcccccc----cCCCCCEEEEecCCCCEEEEEEEEECCCCCCCCccce
Confidence 444566789999999999999999999999 79999997 36999999999999999999999999999999999
Q ss_pred --cccccc--CCC----CCcEEEEe--cC-CCeEEEEecceeeEEechhHHHHHHHHHhhcCCCCccccchhhhhcccCc
Q psy12708 108 --KLVSKD--NCT----NGIFCATL--LE-GDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGF 176 (695)
Q Consensus 108 --~LVGKd--~Ck----dGVceV~L--~P-~dMtasFdNLGIqcVrKKDVEaLk~Rkel~~dPf~t~~n~~~~l~~dig~ 176 (695)
+||||+ .|+ +|+|.+++ .| ++|+++|+||||||+||+||+ .|+ +++. ++.
T Consensus 83 v~~lvGK~~t~c~e~~~~g~~~~ev~l~P~~~m~~~f~~lGI~~~rkkdve---~rk--~~~~--------------~~~ 143 (281)
T 1imh_C 83 ACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKLRNADVE---ARI--GIAG--------------SKK 143 (281)
T ss_dssp EEECCCTTSCCCEEEEETTEEEEEEEECGGGTTEEECCSEEEEECCHHHHH---TTC--TTSS--------------TTC
T ss_pred eeEeecCCCCCccccccCCCEEEEEecCCCCCCEEEEcCeeEEEEeecChH---Hhc--CCCh--------------hhh
Confidence 799997 587 69886655 48 589999999999999999999 332 3321 122
Q ss_pred CCcCCCCCCeeeEEEEEEeeCCCCCeEeeccccccccccCCCCCCceeEeecCcceeccCCceEEEeecCCCCCCceEEE
Q psy12708 177 NNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRF 256 (695)
Q Consensus 177 e~aK~iDLn~VRLcFqafLpd~~G~t~~L~PVvS~PIyDsKsasELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF 256 (695)
| +|+|||||||||++++|++++|+| +|+||||+|++++|+|||||++||||+||+|||||||||+| ||+|||
T Consensus 144 ---k---~~~VRL~F~v~i~~~~G~~~~L~~-~S~PI~d~k~~~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~K-dikVrF 215 (281)
T 1imh_C 144 ---K---STRARLVFRVNIMRKDGSTLTLQT-PSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLK-GTKVIF 215 (281)
T ss_dssp ---C---CCEEEEEEEEEEECSSSCEEEEEE-ECCCEECSCCCCCCEEEEESCCEEETTCCCEEEEEEECCCT-TCEEEE
T ss_pred ---h---ccEEEEEEEEEEECCCCCEEEccC-cCcceecCCCCCCCeEEEEecCccccCCCcEEEEEeeccCC-CcEEEE
Confidence 2 599999999999999999999987 89999999999999999999999999999999999999999 699999
Q ss_pred EEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecC
Q psy12708 257 YEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPL 320 (695)
Q Consensus 257 ~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~ 320 (695)
||+++++.+||+ +|+++||| ||||||+||||+|++|++||+|+|||+| +| +|+|++|||+|.
T Consensus 216 ~E~~~d~~~WE~~~~f~~~dvh-Q~aIvf~tPpY~~~~I~~pV~V~iqL~r-sd~~~S~p~~FtY~P~ 281 (281)
T 1imh_C 216 QENVSDENSWKSEAEIDMELFH-QNHLIVKVPPYHDQHITLPVSVGIYVVT-NAGRSHDVQPFTYTPD 281 (281)
T ss_dssp ESSSCTTCSCEEEECBCGGGCC-SSEEEEECCCCSCTTCSSCEEEEEEEEE-TTEECCSCEEEEEECC
T ss_pred EEeCCCCCceEEeEEeChhhcc-cceEEEECCCCccCccCCCeEEEEEEEe-CCCCccCCcCceecCC
Confidence 998666689999 99999999 9999999999999999999999999999 77 999999999994
No 9
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=100.00 E-value=8.9e-89 Score=691.94 Aligned_cols=256 Identities=23% Similarity=0.367 Sum_probs=226.2
Q ss_pred cccccCCCCceEEEEecCCcccccccccCCcCcccccCcccCCCCCCcceEEeeCCCCc--eEEEEEEEecCCC-CCccc
Q psy12708 30 QSRLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGD--AHLVVSCVSKDSP-YRSHP 106 (695)
Q Consensus 30 ~s~l~~~~~PyL~IvEQPkqrfRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~Gp--AvIvVsLVTkDdp-~RPHP 106 (695)
|..+...++|||+|+|||+++|||||+||| |||||+|++ ||||||||+||.|+ ++|+++++|+|++ +||||
T Consensus 7 ~~~ps~~~~~~l~I~eQP~~~~RfRY~cEG-S~Gsi~g~s-----kt~PtVkl~gY~g~~~v~v~v~~~t~d~~~~~pHp 80 (286)
T 1p7h_L 7 WPLSSQSGSYELRIEVQPKPHHRAHYETEG-SRGAVKAPT-----GGHPVVQLHGYMENKPLGLQIFIGTADERILKPHA 80 (286)
T ss_dssp SCCBSEETTEEEEEEECCCSBCCCBCTTSC-CCCBCCCTT-----SSCCEEEECSCCCSSCEEEEEEEECCSSSCCCBCT
T ss_pred ccCCccCCCceeEEEECCccccEEEEEcCC-CCCcccCcC-----CCCCEEEEECccCCceEEEEEEEEcCCCCCCCCCc
Confidence 343445688999999999999999999999 799999942 79999999999995 5677777889875 69998
Q ss_pred ----ccccccc---CCCC------CcEEEEecC-CCeEEEEecceeeEEechhHHHHHHHHHhhcCCCCccccchhhhhc
Q psy12708 107 ----HKLVSKD---NCTN------GIFCATLLE-GDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLG 172 (695)
Q Consensus 107 ----H~LVGKd---~Ckd------GVceV~L~P-~dMtasFdNLGIqcVrKKDVEaLk~Rkel~~dPf~t~~n~~~~l~~ 172 (695)
|+||||+ .|++ ++|++.+.| ++|+++|+||||||+||+||| +|+ +. +
T Consensus 81 ~~~vh~lvGK~~~t~c~e~~~~g~~v~~i~~~p~~~m~~~f~~lGIl~~rn~diE---~r~--~~----~---------- 141 (286)
T 1p7h_L 81 FYQVHRITGKTVTTTSYEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIE---LRK--GE----T---------- 141 (286)
T ss_dssp TEEEEECCCCSSCCSCCCCBCSSSCBEEEEECGGGTTEEECCSEEEEECCHHHHT---TSS--SC----C----------
T ss_pred cccceeccCCCCccccceeccCCceEEEEEeCCCCccEEEEeccccchhcccCHH---Hhh--cc----c----------
Confidence 8999997 3764 378999999 699999999999999999998 332 21 1
Q ss_pred ccCcCCcCCCCCCeeeEEEEEEeeCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCC
Q psy12708 173 VMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKD 250 (695)
Q Consensus 173 dig~e~aK~iDLn~VRLcFqafLpd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKd 250 (695)
++| .++|+|||||||||++++|++++| ||+|+||||+|+ +++|+|||||++||||+||+|||||||||+|
T Consensus 142 ~~~------~k~~~VRLcFqvfi~~~~G~~~~l-pV~S~PI~~~k~~~~~~l~I~r~s~~sg~v~GG~Ei~Llc~kv~K- 213 (286)
T 1p7h_L 142 DIG------RKNTRVRLVFRVHIPESSGRIVSL-QTASNPIECSQRSAHELPMVERQDTDSCLVYGGQQMILTGQNFTS- 213 (286)
T ss_dssp CCC------TTCCEEEEEEEEEEEETTTEEEEE-EEECCCEECSCCCCCCCCEEEEESCSEEETTCCCEEEEEEESCCS-
T ss_pred ccc------cCCceEEEEEEEEEECCCCCEecC-ceeccceecCCcCCCCCCeEEEeccccccccCCcEEEEEecccCC-
Confidence 122 237999999999999999998888 699999999996 5889999999999999999999999999999
Q ss_pred CceEEEEEc-cCCccCcee--eccccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC-CCCCccceeec
Q psy12708 251 DIEVRFYEE-QDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD-ISEPYNFMLTP 319 (695)
Q Consensus 251 DIkVrF~Ee-ddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD-tSEP~~FTY~P 319 (695)
||+|||||+ ++|+.+||+ +|+ .||||||||||+||||+|++|++||+|+|||+|+.+ +|+|++|||+|
T Consensus 214 DikVrF~E~~~dg~~~We~~g~f~-~dvh~Q~AIvfkTPpY~~~~I~~pV~V~~~l~r~d~~~Sep~~FtY~P 285 (286)
T 1p7h_L 214 ESKVVFTEKTTDGQQIWEMEATVD-KDKSQPNMLFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHP 285 (286)
T ss_dssp SCEEEEEEECSSSCEEEEEEECBC-TTTCBTTEEEEECCCCSCTTCSSCEEEEEEEEETTTEECCCEEEEEEC
T ss_pred CcEEEEEEECCCCCcceEEeEEeC-ccccccceEEEECCCCccCccCCCeEEEEEEeCCCCCcCCCcCceEec
Confidence 899999996 577899998 887 699999999999999999999999999999999944 99999999999
No 10
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3
Probab=100.00 E-value=3.7e-68 Score=509.36 Aligned_cols=167 Identities=53% Similarity=0.968 Sum_probs=160.1
Q ss_pred ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCC-CCccccccccccCCC
Q psy12708 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSP-YRSHPHKLVSKDNCT 116 (695)
Q Consensus 39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp-~RPHPH~LVGKd~Ck 116 (695)
|||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||.|+|+|+|+|||+|+| +|||||+||||++|+
T Consensus 1 P~l~I~EQP~~rg~RFRY~cEg~shGsipG~~S~~~~KT~PtVki~ny~G~a~I~vslVT~d~p~~~pHpH~LVgk~~c~ 80 (175)
T 1bvo_A 1 PYVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVTKEGPEHKPHPHNLVGKEGCK 80 (175)
T ss_dssp CEEEEEECBCTTSCCCBCGGGCSCCCCCCBTTCCSSSCCCCEEEEESCCSCEEEEEEEECSSSTTCCBCSCEEECTTTEE
T ss_pred CCEEEEecCCcccceeEecccCCCCCCccCccCCCCCccCCEEEEecCcCCeEEEEEEEeCCCCCcCCccccccCCCCCC
Confidence 899999999999 999999999999999999999999999999999999999999999999999 999999999998899
Q ss_pred CCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcC---CcCCCCCCeeeEEEE
Q psy12708 117 NGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFN---NRDNLDLNAVRLCFQ 192 (695)
Q Consensus 117 dGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e---~aK~iDLn~VRLcFq 192 (695)
+|+|++.|+|++|+++|+|||||||+||||+ +|++|++++++||++ |++ ++++||||.||||||
T Consensus 81 ~Gvc~v~v~p~~~~~~F~nLGIq~v~KK~v~e~L~~R~~~~~~pf~~------------g~~~~~~~~~idLn~VRLcFq 148 (175)
T 1bvo_A 81 KGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVDPFRT------------GFGHAKEPGSIDLNAVRLCFQ 148 (175)
T ss_dssp TTEEEEECCTTTCEEECSSCEEECCCHHHHHHHHHHHHHHTCCTTSC------------TTGGGTSGGGSCTTEEEEEEE
T ss_pred CCcEEEEeCCCccEEEEcCCceEEEehhhHHHHHHHHHHhccCCccc------------chhhhhhhhccccceEEEEEE
Confidence 9999999999999999999999999999999 999999999999998 433 378999999999999
Q ss_pred EEeeC-CCCC-eEeeccccccccccCC
Q psy12708 193 AYLPK-DKDN-VIKLEPVVSDIIYDAK 217 (695)
Q Consensus 193 afLpd-~~G~-t~~L~PVvS~PIyDsK 217 (695)
||++| ++|+ +.+|+||+|+||||+|
T Consensus 149 afl~d~~~G~~t~~l~PVvS~pIyd~K 175 (175)
T 1bvo_A 149 VFLEGQQRGRFTEPLTPVVSDIIYDKK 175 (175)
T ss_dssp EEEECSSTTCEEEECCCEECCCEECCC
T ss_pred EEeecCCCCeEcccCCCeEccccccCC
Confidence 99999 5788 7889999999999997
No 11
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=100.00 E-value=6.1e-46 Score=337.89 Aligned_cols=115 Identities=40% Similarity=0.666 Sum_probs=104.7
Q ss_pred CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCc
Q psy12708 219 YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDP 296 (695)
Q Consensus 219 asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~P 296 (695)
+++|+|||||++||||+||+||||||+||+|+||+|||||+.+++.+||+ +|+++|||||+||||+||||+|++|++|
T Consensus 1 ~s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~p 80 (119)
T 1ikn_C 1 ASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKP 80 (119)
T ss_dssp CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSEEEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSCTTCSSC
T ss_pred CCCCEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCCCCcCCC
Confidence 58999999999999999999999999999999999999998666689999 9999999999999999999999999999
Q ss_pred eEEEEEEEcCCC--CCCCccceeecCCCCChhhhHhhhh
Q psy12708 297 VHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIFWRYRKN 333 (695)
Q Consensus 297 V~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i~rkrr~ 333 (695)
|+|+|||+|++| +|+|++|||+|..+|.+++.|||||
T Consensus 81 V~V~i~L~r~sd~~~Sep~~FtY~P~~~d~~~~~rKr~k 119 (119)
T 1ikn_C 81 ASVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQRKRQK 119 (119)
T ss_dssp EEEEEEEEETTTCCBCCCEEEEEECCSSSSCC-------
T ss_pred EEEEEEEEcCCCCCccCCcccEeecCccChhHHhhccCC
Confidence 999999999998 9999999999999999999988875
No 12
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=100.00 E-value=1.1e-45 Score=342.35 Aligned_cols=126 Identities=33% Similarity=0.547 Sum_probs=117.0
Q ss_pred CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCc
Q psy12708 219 YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDP 296 (695)
Q Consensus 219 asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~P 296 (695)
+++|+|||||++||||.||+|||||||||+|+||+|||||+ .||+ +|+++||||||||||+||||+|++|++|
T Consensus 1 t~~L~I~r~s~~sg~v~GG~Ev~LLceKv~K~Di~VrF~e~-----~WE~~g~f~~~dVh~Q~AIvfkTPpY~~~~I~~p 75 (136)
T 1oy3_C 1 TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVHRQVAIVFRTPPYADPSLQAP 75 (136)
T ss_dssp CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEET-----TEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSC
T ss_pred CCccEEEEecCCccccCCCcEEEEEccccccCCCEEEEEcc-----CeEEecccChhheecceEEEEECCCCCCccCCCC
Confidence 58999999999999999999999999999999999999994 6999 8999999999999999999999999999
Q ss_pred eEEEEEEEcCCC--CCCCccceeecCCCCChhhhHhhhhccCcchhHHhHHhhhc-CcCCCC
Q psy12708 297 VHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMT-QFVPGE 355 (695)
Q Consensus 297 V~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i~rkrr~~~~~~~~~~~f~~~~~-~~~~~~ 355 (695)
|+|+|||+|+|| +|+|++|+|+|.+.|..++.+|||| .++.|..+|+ .+++|.
T Consensus 76 V~V~iqL~rpsd~~~Sep~~F~Y~P~~~d~~~~~~Krkr------~~~~f~~~~~~~~~~g~ 131 (136)
T 1oy3_C 76 VRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR------TYETFKSIMKKSPFNGP 131 (136)
T ss_dssp EEEEEEEEETTTTEECCCEEEEEECCCCHHHHHHHHHHH------THHHHHHHHHHSSCCCS
T ss_pred eEEEEEEEeCCCCCccCCcceEEecCccChhHHhhhhcc------chhhHHHHHhcCCCCCC
Confidence 999999999999 9999999999999999899876654 4678999995 577763
No 13
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=100.00 E-value=5.8e-45 Score=329.48 Aligned_cols=110 Identities=35% Similarity=0.591 Sum_probs=100.8
Q ss_pred CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCc
Q psy12708 219 YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDP 296 (695)
Q Consensus 219 asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~P 296 (695)
+++|+|||||++||||.||+|||||||||+|+||+|||||+ .||+ +|+++|||||+||||+||||+|++|++|
T Consensus 1 t~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~e~-----~WE~~g~f~~~Dvh~Q~aIvfktPpY~~~~I~~p 75 (114)
T 1my7_A 1 TAELKICRVNRRSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVHRQVAIVFRTPPYADPSLQAP 75 (114)
T ss_dssp CCSCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEET-----TEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSC
T ss_pred CCccEEEEecCCceecCCCcEEEEEecccccCCCEEEEEcc-----CeEEecccChhhcccceeEEEECCCCCCCccCCC
Confidence 58999999999999999999999999999999999999995 6999 8999999999999999999999999999
Q ss_pred eEEEEEEEcCCC--CCCCccceeecCCCCChhhhHhhhh
Q psy12708 297 VHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIFWRYRKN 333 (695)
Q Consensus 297 V~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i~rkrr~ 333 (695)
|+|+|||+|+|| +|+|++|||+|.+.|..++.|||||
T Consensus 76 V~V~i~L~r~sd~~~Sep~~FtY~P~~~~~~~~~~Kr~r 114 (114)
T 1my7_A 76 VRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR 114 (114)
T ss_dssp EEEEEEEEETTTTEECCCEEEEEECCCCTTCC-------
T ss_pred EEEEEEEEeCCCCCcCCCcccEEecCccChhhhhhhhcC
Confidence 999999999999 9999999999999999999888865
No 14
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=100.00 E-value=1.7e-43 Score=316.29 Aligned_cols=102 Identities=42% Similarity=0.727 Sum_probs=94.2
Q ss_pred CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCCCCCCCc
Q psy12708 219 YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEINDP 296 (695)
Q Consensus 219 asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It~P 296 (695)
+++|+|||||++||+|+||+||||||+||+|+||+|||||+.+++.+||+ +|+++|||||+||||+||||+|++|++|
T Consensus 1 ~s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~p 80 (106)
T 1u36_A 1 ASNLKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAICFKTPKYKDVNITKP 80 (106)
T ss_dssp --CCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEECC----CEEEECBCCGGGEETTTEEEEECCCCSCTTCSSC
T ss_pred CCCCEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceEEeeecCHHHcccceEEEEECCCCCCCccCCC
Confidence 48999999999999999999999999999999999999998666689999 9999999999999999999999999999
Q ss_pred eEEEEEEEcCCC--CCCCccceeecC
Q psy12708 297 VHVKIQLVTKKD--ISEPYNFMLTPL 320 (695)
Q Consensus 297 V~V~IqL~RpSD--tSEP~~FTY~P~ 320 (695)
|+|+|||+|++| +|+|++|||+|.
T Consensus 81 V~V~~~l~r~sd~~~Sep~~FtY~P~ 106 (106)
T 1u36_A 81 ASVFVQLRRKSDLETSEPKPFLYYPE 106 (106)
T ss_dssp EEEEEEEECTTTCCBCCCEEEEEECC
T ss_pred EEEEEEEEcCCCCCccCCcCcEEcCC
Confidence 999999999998 999999999994
No 15
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=100.00 E-value=2e-42 Score=311.28 Aligned_cols=101 Identities=39% Similarity=0.669 Sum_probs=97.3
Q ss_pred cCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--eccccccccceeEEEeCCCcCC
Q psy12708 215 DAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKS 290 (695)
Q Consensus 215 DsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd 290 (695)
++|| +++|+|||||++||+|+||+|||||||||+|+||+|||||+ +||+ +|+++|||||+||||+||||+|
T Consensus 4 ~~ks~~~~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V~F~e~-----~WE~~~~f~~~Dvh~Q~aIvf~tPpY~~ 78 (110)
T 1zk9_A 4 RGSHMNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTA-----SWEGRADFSQADVHRQIAIVFKTPPYED 78 (110)
T ss_dssp ETTEEECTTSCEEEESCSCCCTTCCCCCCEEESCCCTTSCCCEEEET-----TEEEECCCCGGGCCCCCCCCCCCCCCSC
T ss_pred cccCCCCCCCEEEEecCCccccCCCCEEEEEecccccCCcEEEEech-----heeeccccCcccccccceEEEECCCCCC
Confidence 5675 79999999999999999999999999999999999999985 8999 8999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCCC--CCCCccceeecC
Q psy12708 291 FEINDPVHVKIQLVTKKD--ISEPYNFMLTPL 320 (695)
Q Consensus 291 ~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~ 320 (695)
++|++||+|+|||+|++| +|+|++|||+|.
T Consensus 79 ~~I~~pV~V~i~L~r~sd~~~Sep~~FtY~P~ 110 (110)
T 1zk9_A 79 LEISEPVTVNVFLQRLTDGVCSEPLPFTYLPR 110 (110)
T ss_dssp TTCSSCEEEEECCBCTTTCCBCCCEEEEECCC
T ss_pred cccCCCeEEEEEEEeCCCCCccCCcCcEEcCC
Confidence 999999999999999999 999999999995
No 16
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=7.8e-38 Score=283.02 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=93.7
Q ss_pred CCCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEc-cCCccCcee--eccccccccceeEEEeCCCcCCCCCC
Q psy12708 218 TYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEE-QDGVVVWDE--RVKTLEVHKQYAIVLKTPAYKSFEIN 294 (695)
Q Consensus 218 sasELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~Ee-ddG~~iWEa--~Fs~tDVHrQ~AIVFKTPPYrd~~It 294 (695)
|++-++|||+|++||||+||+||||||+||+| ||+|||||+ +||+.+||+ +|+ .|+|||+||||+||||+|++|+
T Consensus 5 a~~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~k-d~kV~F~E~~~dG~~~WE~~a~f~-~d~~~q~aivf~tPpY~~~~I~ 82 (114)
T 2yrp_A 5 SSGLPQVEAYSPSACSVRGGEELVLTGSNFLP-DSKVVFIERGPDGKLQWEEEATVN-RLQSNEVTLTLTVPEYSNKRVS 82 (114)
T ss_dssp CCSCCEEEEEESSCEETTCCSEEEEEEESCCT-TCEEEEECBCTTSCBCCCCBCCBC-TTTCBTTEEEEECCCCSCCSCS
T ss_pred CCCCCEEEEecCcccccCCCCEEEEEecccCC-CCEEEEEEECCCCCcceEEeeEEC-hHHcccccEEEecCCCCCCccC
Confidence 45667999999999999999999999999999 799999997 578899999 888 7999999999999999999999
Q ss_pred CceEEEEEEEcCCC-CCCCccceeecC
Q psy12708 295 DPVHVKIQLVTKKD-ISEPYNFMLTPL 320 (695)
Q Consensus 295 ~PV~V~IqL~RpSD-tSEP~~FTY~P~ 320 (695)
+||+|+|||+++.. +|+|++|||+|.
T Consensus 83 ~pV~V~~~l~~~~rk~Se~~~FtY~P~ 109 (114)
T 2yrp_A 83 RPVQVYFYVSNGRRKRSPTQSFRFLPV 109 (114)
T ss_dssp SCEEEEEEEECSSSCBCCCEEEEEECC
T ss_pred CCeEEEEEECCCCCcccCCcCcEEech
Confidence 99999999965444 999999999997
No 17
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=96.65 E-value=0.0063 Score=57.26 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=66.9
Q ss_pred CceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEE
Q psy12708 221 DLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVK 300 (695)
Q Consensus 221 ELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~ 300 (695)
.+.|.+++.+.|+..||.+|+|+|++|-. +.+|.|=. ...|-. ++...||++.|||=+ +--.|.|.
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~~-GlqV~FG~----t~~w~e------~itphairv~~PP~~---~pG~V~VT 70 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVIIIGDNFFD-GLQVVFGT----MLVWSE------LITPHAIRVQTPPRH---IPGVVEVT 70 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEEEEEESCCT-TCEEEETT----EEECEE------EEETTEEEEECCCCS---SCEEEEEE
T ss_pred CCceeEecCCCCCccCCeEEEEeCCCccc-CCEEEECC----eeeeee------eecccceEEECCCCC---CCCceEEE
Confidence 36789999999999999999999999975 89999963 346754 566678999999963 33455555
Q ss_pred EEEEcCCC---CCCCccceeecCCCC
Q psy12708 301 IQLVTKKD---ISEPYNFMLTPLDSG 323 (695)
Q Consensus 301 IqL~RpSD---tSEP~~FTY~P~~~d 323 (695)
+ ...++ ...|..|+|+-.+..
T Consensus 71 l--~~k~kqf~~g~p~~F~Y~~l~eP 94 (138)
T 3muj_A 71 L--SYKSKQFCKGAPGRFVYTALNEP 94 (138)
T ss_dssp E--EETTEEECTTSCEEEEEECCCSC
T ss_pred E--eecCcccccCCCceEEEecCCCC
Confidence 5 44444 677899999976553
No 18
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=96.39 E-value=0.013 Score=51.27 Aligned_cols=83 Identities=16% Similarity=0.057 Sum_probs=58.3
Q ss_pred CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccc----cccccceeEEEeCCCcCCCCCC
Q psy12708 219 YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKT----LEVHKQYAIVLKTPAYKSFEIN 294 (695)
Q Consensus 219 asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~----tDVHrQ~AIVFKTPPYrd~~It 294 (695)
.+-+.|..++...|+..||..|.|.|....-. ..|..-|.. .++-..-.|.|.||| +
T Consensus 4 ~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~g-------------s~~~~~fG~~~vpa~~~s~~vl~C~tPp-~----- 64 (95)
T 2cxk_A 4 GSSGMVTDYSPEWSYPEGGVKVLITGPWQEAS-------------NNYSCLFDQISVPASLIQPGVLRCYCPA-H----- 64 (95)
T ss_dssp -CCSCCCEEECSEECTTCCCEEEEESSCCCCS-------------SCEEEEETTEEEECEEEETTEEEEECCC-C-----
T ss_pred CCcEEEEEECCCcccCCCCEEEEEEeECCCCC-------------ccEEEEECCEEEeEEEeECCEEEEEecC-C-----
Confidence 46679999999999999999999999777431 135554443 333334579999999 3
Q ss_pred CceEEEEEEEcCCC-CCCCccceeecC
Q psy12708 295 DPVHVKIQLVTKKD-ISEPYNFMLTPL 320 (695)
Q Consensus 295 ~PV~V~IqL~RpSD-tSEP~~FTY~P~ 320 (695)
.|=.|.|+|.-... .|+...|+|.+.
T Consensus 65 ~~G~v~~~v~~d~~~~s~~~~FeY~~~ 91 (95)
T 2cxk_A 65 DTGLVTLQVAFNNQIISNSVVFEYKSG 91 (95)
T ss_dssp CSEEEEEEEEETTEECSCCEEEEECCC
T ss_pred CCceEeEEEEECCeecCCceEEEEeCC
Confidence 34455555542333 899999999954
No 19
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=96.00 E-value=0.023 Score=60.50 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=64.9
Q ss_pred CceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEEE
Q psy12708 221 DLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVK 300 (695)
Q Consensus 221 ELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V~ 300 (695)
.+.|..++.++|+.+||.+|+|+|++|-- +.+|.|= +...|-. ++-..||.+.|||= .+--+|.|.
T Consensus 231 tP~IkaIsPnEG~~tGG~tV~IiGenFf~-GLQVvFG----tt~vWse------lITphAIRV~tPPr---~~PGvVdVT 296 (402)
T 3mlp_A 231 TPCIKAISPSEGWTTGGATVIIIGDNFFD-GLQVIFG----TMLVWSE------LITPHAIRVQTPPR---HIPGVVEVT 296 (402)
T ss_dssp CCEEEECSSCEECTTCCCEEEEEEECCCT-TCEEEET----TEEECEE------EEETTEEEEECCCC---SSCEEEEEE
T ss_pred CcceEEecCCCCCccCCeEEEEeCCCccc-CCEEEEc----cEeeeeE------EecccceEEECCCC---CCCCceEEE
Confidence 47899999999999999999999999965 8999996 3346754 45556899999996 333455555
Q ss_pred EEEEcCCC---CCCCccceeecCCC
Q psy12708 301 IQLVTKKD---ISEPYNFMLTPLDS 322 (695)
Q Consensus 301 IqL~RpSD---tSEP~~FTY~P~~~ 322 (695)
+ ...++ ...|-.|+|+-.+.
T Consensus 297 L--s~ksKqf~kg~pgrF~YtALne 319 (402)
T 3mlp_A 297 L--SYKSKQFCKGTPGRFIYTALNE 319 (402)
T ss_dssp E--EETTEEESTTSCEEEEEC---C
T ss_pred E--EecCcccccCCCCceeeecCCC
Confidence 5 55556 77899999996654
No 20
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=85.82 E-value=0.76 Score=49.83 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=56.7
Q ss_pred cCCce---EEEeecCCCCCCceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCC-----CCCceEEEEEEEcC
Q psy12708 235 VGDMK---MIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFE-----INDPVHVKIQLVTK 306 (695)
Q Consensus 235 ~GGeE---VfLLCdKVqKdDIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~-----It~PV~V~IqL~Rp 306 (695)
.||.| |=|.|+||.- +.+|.|=+ +|+ ++-+..-=.|+|..|.+..-. +++|++|-|.|.|.
T Consensus 337 ~g~g~~amlEl~G~nF~~-~L~VWFG~-------v~a---eT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi~LVR~ 405 (422)
T 3iag_C 337 NGGGDVAMLELTGQNFTP-NLRVWFGD-------VEA---ETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRN 405 (422)
T ss_dssp CCCSSSCEEEEEEESCCT-TEEEEETT-------EEC---CEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEEEEEET
T ss_pred cCCCceeEEEEEccCCCC-CceEEECC-------CCc---eeEEeccceEEEeCCCHHHhccCccccCCceEEEEEEEec
Confidence 56665 6688999987 89988864 555 121223345899999876543 78999999999988
Q ss_pred CC--CCCCccceeecC
Q psy12708 307 KD--ISEPYNFMLTPL 320 (695)
Q Consensus 307 SD--tSEP~~FTY~P~ 320 (695)
.. -+--+.|||+|.
T Consensus 406 DGviy~t~~tfty~pe 421 (422)
T 3iag_C 406 DGVIYSTSLTFTYTPE 421 (422)
T ss_dssp TSEEEEEEEEEEECCC
T ss_pred CCEEeeCCccEEecCC
Confidence 77 788899999996
No 21
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=83.53 E-value=3.6 Score=35.74 Aligned_cols=85 Identities=14% Similarity=0.017 Sum_probs=53.1
Q ss_pred CCceeEeecCcceeccCCceEEEeecCCCCC--CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCce
Q psy12708 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKD--DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPV 297 (695)
Q Consensus 220 sELkIcRmSk~SGsV~GGeEVfLLCdKVqKd--DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV 297 (695)
..+.|..++..+|+. |..|.|.|.||..+ ||.=++.... ...+. .+.-.-..|+|+|++-... .-+|
T Consensus 6 p~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~sdv~~V~vgg~------~C~~~-~~~~s~~~IvC~~~~~~~~--~g~V 74 (99)
T 1uad_C 6 QPPLVTGISPNEGIP--WTKVTIRGENLGTGPTDLIGLTICGH------NCLLT-AEWMSASKIVCRVGQAKND--KGDI 74 (99)
T ss_dssp CCCEEEEEESSEEST--TCEEEEEEECSCSSGGGEEEEEETTE------ECGGG-CEEEETTEEEEECCCCSSS--SCCE
T ss_pred CCCEEEEEECCCcCC--CCEEEEEEEeCCCCcccceEEEECCE------EceEe-eceeecCEEEEEeCCCCCc--ceeE
Confidence 457999999999988 79999999999765 4421333211 11111 0111123599999887654 5777
Q ss_pred EEEEEEEcCCC-CCCCccceee
Q psy12708 298 HVKIQLVTKKD-ISEPYNFMLT 318 (695)
Q Consensus 298 ~V~IqL~RpSD-tSEP~~FTY~ 318 (695)
.|.+ ..... .| +..|+|.
T Consensus 75 ~V~v--~~~~~~~s-~~~F~y~ 93 (99)
T 1uad_C 75 IVTT--KSGGRGTS-TVSFKLL 93 (99)
T ss_dssp EEEE--TTTEECEE-SSCCEEC
T ss_pred EEEE--CCCCcEEe-cceEEEe
Confidence 7665 22112 33 4689997
No 22
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=77.48 E-value=2.5 Score=48.05 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=54.1
Q ss_pred CCceeEeecCcceeccCCceEEEeecCCCCC--------CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCC
Q psy12708 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKD--------DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSF 291 (695)
Q Consensus 220 sELkIcRmSk~SGsV~GGeEVfLLCdKVqKd--------DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~ 291 (695)
..+.|..++..+|+..||..|-|.|.+|... .+.|.|-. ....+....+ .-..|+|.||+...
T Consensus 540 ~~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg-------~~C~~~~~~~-s~t~I~C~tp~~~~- 610 (727)
T 2uzx_B 540 CLPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGN-------ESCTLTLSES-TMNTLKCTVGPAMN- 610 (727)
T ss_dssp CCCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETT-------EECEECGGGC-CSSEEEEECCC----
T ss_pred eCCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECC-------Cccceeeeec-cCCEEEEEeCCCCC-
Confidence 3579999999999999999999999999842 35665532 1111111111 22459999999652
Q ss_pred CCCCceEEEEEEEcCCCCCCCccceee
Q psy12708 292 EINDPVHVKIQLVTKKDISEPYNFMLT 318 (695)
Q Consensus 292 ~It~PV~V~IqL~RpSDtSEP~~FTY~ 318 (695)
.++.|.|.+..+...+.+..|+|.
T Consensus 611 ---~~~~v~V~v~~~~~~~~~~~FtY~ 634 (727)
T 2uzx_B 611 ---KHFNMSIIISNGHGTTQYSTFSYV 634 (727)
T ss_dssp -----CCCEEEEECSSCEEEEECCBCC
T ss_pred ---CCccEEEEEeCCcceecccccccc
Confidence 233444444444335567789996
No 23
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=43.87 E-value=40 Score=34.41 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=52.6
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC--CceEEEEEc----cCCccCceeeccccccccceeEEEeCCCcCCCCCCC
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD--DIEVRFYEE----QDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEIND 295 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd--DIkVrF~Ee----ddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~ 295 (695)
..|..++..+|. +|.+|.|.|.||.-+ +|+|.|-.+ +-.-..| .-.-|.|.+|.=.
T Consensus 18 ~~~~~~~p~~g~--~~~~~~i~g~nfg~~~~~~~v~~~~~~~~~~~~v~~~----------~~~~~~~~vp~~~------ 79 (409)
T 3hrp_A 18 VTVESFMPVEGK--LREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGI----------DNNTLYCLAPRQL------ 79 (409)
T ss_dssp CEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEEECSSCEEEEEEEEE----------ETTEEEEECCSCC------
T ss_pred cEEEEEcCCCCC--CCcEEEEEeEcCCCCccceEEEECCcccceEEEEEEE----------CCCEEEEEECCCC------
Confidence 489999999988 899999999999753 577777762 1111222 2234888888721
Q ss_pred ceEEEEEEEcCCC-CCCCccceeecC
Q psy12708 296 PVHVKIQLVTKKD-ISEPYNFMLTPL 320 (695)
Q Consensus 296 PV~V~IqL~RpSD-tSEP~~FTY~P~ 320 (695)
+=.+.|+|.-..+ .+....|.|.+.
T Consensus 80 ~g~~~i~v~~~~~~~~~~~~F~y~~~ 105 (409)
T 3hrp_A 80 PGGNRIKVIVDGKEVTTDGTFKYEQA 105 (409)
T ss_dssp SEEEEEEEEETTEEEECSSCEEECCC
T ss_pred CCcEEEEEEECCeeEEEeeeEEEecc
Confidence 1134444444445 445688999774
No 24
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=42.39 E-value=24 Score=36.53 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=55.1
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC--CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD--DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd--DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
+.|..++..+|. +|.+|.|.|++|.-+ +|+|.|=...-.-..|. -.-|.|++|.=. -+-++.|
T Consensus 18 ~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v~~~~----------~~~i~~~vp~~~---~~g~~~v 82 (430)
T 3tc9_A 18 VVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAK----------GKSLYCVVPAKA---YDGDIKL 82 (430)
T ss_dssp CEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEECEEEEC----------SSEEEEECCTTC---TTCCEEE
T ss_pred CEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEEEEEEC----------CCEEEEEeCCCC---CCccEEE
Confidence 489999999999 799999999999653 45666644222222232 245999999833 2456666
Q ss_pred EEEEEcCC---CCCCCccceeecC
Q psy12708 300 KIQLVTKK---DISEPYNFMLTPL 320 (695)
Q Consensus 300 ~IqL~RpS---DtSEP~~FTY~P~ 320 (695)
.+.....+ -......|+|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~F~y~~~ 106 (430)
T 3tc9_A 83 SILNDEGEEIANTEANEKFVYQKK 106 (430)
T ss_dssp EEECTTSCEEEEEECSSCCEECCC
T ss_pred EEecCCcceeeEEEEeeEEEEEEE
Confidence 66543332 1234789999753
No 25
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=26.55 E-value=64 Score=33.57 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=54.2
Q ss_pred ceeEeecCcceeccCCceEEEeecCCCCC--CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCCCCCCCceEE
Q psy12708 222 LTIHTLSHVSAPVVGDMKMIILCDKVNKD--DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHV 299 (695)
Q Consensus 222 LkIcRmSk~SGsV~GGeEVfLLCdKVqKd--DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd~~It~PV~V 299 (695)
+.|..++..+|.+ |.+|+|.|+||.-+ .|+|.|-..+-.... -.-.-|.|.+|+=. -.-.|.|
T Consensus 20 ~~i~~~~P~~g~~--~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~~----------~~~~~i~~~vp~~~---~~g~~~v 84 (433)
T 4hw6_A 20 IVVEKFLPTEGRK--GTRVVVYGRNFGNDVSKVKVTIGGYPAKVIN----------VKGESLLCICPSKA---YEGDVKV 84 (433)
T ss_dssp CEEEEEESSEECT--TCEEEEEEECCCSCGGGEEEEETTEEEEEEE----------ECSSEEEEECCTTC---TTCCEEE
T ss_pred CEEEEECCCCCCC--CCEEEEEeECCCCCcceeEEEECCEEEEEEE----------eCCCEEEEEeCCCC---CCCCEEE
Confidence 4899999999988 89999999999753 467776542111001 12345999999733 2456666
Q ss_pred EEEEEcCCC-----CCCCccceeecC
Q psy12708 300 KIQLVTKKD-----ISEPYNFMLTPL 320 (695)
Q Consensus 300 ~IqL~RpSD-----tSEP~~FTY~P~ 320 (695)
.+ .+..+ ......|+|.+.
T Consensus 85 ~v--~~~~~~~~~~~~~~~~F~y~~~ 108 (433)
T 4hw6_A 85 SV--VGDDEAELKSGVCEAKFDYQYN 108 (433)
T ss_dssp EE--ECTTSCEEEEEECSSCCEECCC
T ss_pred EE--ecCCcceeeEEEeeeEEEEEee
Confidence 54 44442 355789999874
No 26
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=20.91 E-value=22 Score=40.51 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=2.0
Q ss_pred CCceeEeecCcceeccCCceEEEeecCCCCC-CceEEEEEccCCccCceeeccccccccceeEEEeCCCcCC
Q psy12708 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKD-DIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKS 290 (695)
Q Consensus 220 sELkIcRmSk~SGsV~GGeEVfLLCdKVqKd-DIkVrF~EeddG~~iWEa~Fs~tDVHrQ~AIVFKTPPYrd 290 (695)
.++.|..++...|+..||..|.|.|.+|.-. .+.|.|=.. +..+ .+-....|+|.||+...
T Consensus 634 ~~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~-------~C~i---~~~s~t~I~C~tP~~~~ 695 (727)
T 2uzx_B 634 VDPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGK-------TCTL---KSVSNSILECYTPAQTI 695 (727)
T ss_dssp CCC---------------------------------------------------------------------
T ss_pred ccceeEEECCCccccCCCEEEEEEEECCCCCCceEEEECCE-------EeeE---EeecCCEEEEEcCCCCC
Confidence 3788999999999999999999999999753 245655211 1111 01122459999999873
Done!