RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12708
(695 letters)
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 175
Score = 186 bits (474), Expect = 4e-56
Identities = 88/184 (47%), Positives = 112/184 (60%), Gaps = 14/184 (7%)
Query: 39 PYIEILEQPKSKV-RFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
PY+EI EQP K RFRYECEGRSAGSI G N+T E K++P I + Y G A +VVSCV+
Sbjct: 1 PYVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVT 60
Query: 98 KDSP-YRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQF 155
K+ P ++ HPH LV K+ C G+ + M+Y+F NLGIQC+KKKD+ +A RL +
Sbjct: 61 KEGPEHKPHPHNLVGKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEI 120
Query: 156 CQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIK--LEPVVSDII 213
PF + A ++DLNAVRLCFQ +L + L PVVSDII
Sbjct: 121 RVDPFRTGFGHAK---------EPGSIDLNAVRLCFQVFLEGQQRGRFTEPLTPVVSDII 171
Query: 214 YDAK 217
YD K
Sbjct: 172 YDKK 175
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 173
Score = 185 bits (472), Expect = 1e-55
Identities = 79/181 (43%), Positives = 105/181 (58%), Gaps = 14/181 (7%)
Query: 39 PYIEILEQPKSKV-RFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
PY+EI+EQPK + RFRY+CEGRSAGSI G ST K++P I I Y G + +S V+
Sbjct: 1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVT 60
Query: 98 KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQFC 156
KD P+R HPH+LV K +C +G + A L +SF NLGIQC+KK+D+ QA +Q
Sbjct: 61 KDPPHRPHPHELVGK-DCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTN 119
Query: 157 QRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDA 216
PF+ R + DLNAVRLCFQ + + L PV+S I+D
Sbjct: 120 NNPFHVPIE-----------EQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDN 168
Query: 217 K 217
+
Sbjct: 169 R 169
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB),
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 185 bits (471), Expect = 4e-55
Identities = 76/212 (35%), Positives = 101/212 (47%), Gaps = 27/212 (12%)
Query: 39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
PY++ILEQPK + RFRY CEG S G + GA+S KSYP++ I NYVG A ++V V+
Sbjct: 3 PYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVT 62
Query: 98 KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ--AFRLYLQF 155
H H LV K +C +G+ T DM F NLGI + KK + +
Sbjct: 63 NGKNIHLHAHSLVGK-HCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEA 121
Query: 156 CQRPFNSEKNSAWTLLGVMGFN--------------------NRDNLDLNAVRLCFQAYL 195
C R +N L + +DL+ VRL F A+L
Sbjct: 122 CIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFL 181
Query: 196 PKDKDN-VIKLEPVVSDIIYDAK--TYSDLTI 224
P + +LEPVVSD IYD+K S+L I
Sbjct: 182 PDSTGSFTRRLEPVVSDAIYDSKAPNASNLKI 213
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 180 bits (457), Expect = 2e-53
Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 39 PYIEILEQPKSKV-RFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
PY+ I+EQPK + RFRY CEG S G + GA+S K+YP + I NY G A + V V+
Sbjct: 2 PYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLVT 61
Query: 98 KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI----QAFRLYL 153
P R+H H LV K GI ++ DMT F NLG+ + KK++
Sbjct: 62 HSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKLQRQ 121
Query: 154 QFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDII 213
+ RP + L + +DL+ VRL F A+L + L+PV+S I
Sbjct: 122 RLRSRPQGLTEAEQRELEQEAKELKKV-MDLSIVRLRFSAFLRS-----LPLKPVISQPI 175
Query: 214 YDAK 217
+D+K
Sbjct: 176 HDSK 179
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 175
Score = 177 bits (450), Expect = 1e-52
Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 13/182 (7%)
Query: 39 PYIEILEQPKSKV-RFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
PYIEI EQP+ + RFRY+CEGRSAGSI G +ST K++P I I NY G + + V+
Sbjct: 1 PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVT 60
Query: 98 KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQFC 156
K+ PY+ HPH LV K +C +G + A SF NLGIQC+KKKD+ ++ L +
Sbjct: 61 KNEPYKPHPHDLVGK-DCRDGYYEAEFGPERRVLSFQNLGIQCVKKKDLKESISLRISKK 119
Query: 157 QRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYD 215
PFN + N D DLN VRLCFQA+LP + N + L P++S+ IYD
Sbjct: 120 INPFNVPEEQLH---------NIDEYDLNVVRLCFQAFLPDEHGNYTLALPPLISNPIYD 170
Query: 216 AK 217
+
Sbjct: 171 NR 172
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5
(TONEBP), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 180
Score = 144 bits (364), Expect = 2e-40
Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 44/196 (22%)
Query: 35 ASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVS 94
S ++I+ QP+++ R RY EG S GS+ + +P + + + L V
Sbjct: 13 KSEGKELKIVVQPETQHRARYLTEG-SRGSVKDRTQ----QGFPTVKLEGHNEPVVLQVF 67
Query: 95 CVSKDSPYRSHP----HKLVSKDNCTNGIFCAT---------LLEGDMTYSFTNLGIQCM 141
+ + H ++ ++ +MT + +GI +
Sbjct: 68 VGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAVDCVGILKL 127
Query: 142 KKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDN 201
+ D++A +G RL F+ + KD
Sbjct: 128 RNADVEA------------------------RIGIAGSKKKS-TRARLVFRVNIM-RKDG 161
Query: 202 VIKLEPVVSDIIYDAK 217
S I +
Sbjct: 162 STLTLQTPSSPILCTQ 177
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1
(NFATC), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 183
Score = 133 bits (336), Expect = 1e-36
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 31/188 (16%)
Query: 38 RPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
+ I QPK R YE EG S G++ +P + + Y+ + L +
Sbjct: 15 SYELRIEVQPKPHHRAHYETEG-SRGAVKAPTGG-----HPVVQLHGYMENKPLGLQIFI 68
Query: 98 KDSP---YRSHP----HKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQA-F 149
+ + H H++ K T + + L I K +++A
Sbjct: 69 GTADERILKPHAFYQVHRITGKT-------VTTTSYEKIVGNTKVLEIPLEPKNNMRATI 121
Query: 150 RLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVV 209
R + E VRL F+ ++P + I
Sbjct: 122 DCAGILKLRNADIELRKG---------ETDIGRKNTRVRLVFRVHIP-ESSGRIVSLQTA 171
Query: 210 SDIIYDAK 217
S+ I ++
Sbjct: 172 SNPIECSQ 179
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
factor {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 114 bits (287), Expect = 7e-31
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 221 DLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVK--TLEVHKQ 278
+L I + + V G ++ +LCDKV KDDI++RFYEE++ VW+ +VH+Q
Sbjct: 1 NLKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQ 60
Query: 279 YAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTP 319
+AI KTP YK I P V +QL K D SEP F+ P
Sbjct: 61 FAICFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYP 103
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 111 bits (280), Expect = 5e-30
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 221 DLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVK--TLEVHKQ 278
+L I + + V G ++ +LCDKV KDDIEVRFYE+ + W +VHKQ
Sbjct: 1 NLKISRMDKTAGSVRGGDEVYLLCDKVQKDDIEVRFYEDDEN--GWQAFGDFSPTDVHKQ 58
Query: 279 YAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTP 319
YAIV +TP Y +I PV V +QL K+ +S+ F P
Sbjct: 59 YAIVFRTPPYHKMKIERPVTVFLQLKRKRGGDVSDSKQFTYYP 101
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 110 bits (276), Expect = 2e-29
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKT--LEVHK 277
++L I ++ S +G ++ +LCDKV K+DIEV F W+ R +VH+
Sbjct: 2 AELKICRVNRRSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFSQADVHR 56
Query: 278 QYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGR 324
Q AIV +TP Y + PV V +QL D +SEP F P R
Sbjct: 57 QVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDR 105
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB),
dimerization domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 100
Score = 100 bits (250), Expect = 6e-26
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 220 SDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKT--LEVHK 277
++L I ++ V G ++ ILCDKV KDDIEVRF + W+ + +VH+
Sbjct: 2 AELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLDN-----WEAKGSFSQADVHR 56
Query: 278 QYAIVLKTPAYKSFEINDPVHVKIQLV--TKKDISEPYNFMLTP 319
Q AIV +TP + +I +P+ VK+QL + +++SEP +F P
Sbjct: 57 QVAIVFRTPPFLR-DITEPITVKMQLRRPSDQEVSEPMDFRYLP 99
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
(TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 87.5 bits (217), Expect = 1e-21
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 224 IHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLE--VHKQYAI 281
I S S V G+ ++ ++ K + D W + H+ +
Sbjct: 4 ILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDE-NSWKSEAEIDMELFHQN-HL 61
Query: 282 VLKTPAYKSFEINDPVHVKIQLVTKKDI-SEPYNFMLTP 319
++K P Y I PV V I +VT + F TP
Sbjct: 62 IVKVPPYHDQHITLPVSVGIYVVTNAGRSHDVQPFTYTP 100
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
(NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 87.3 bits (216), Expect = 2e-21
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 223 TIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEE-QDGVVVWDERVKTL-EVHKQYA 280
+ S V G +MI+ + +V F E+ DG +W+ + +
Sbjct: 4 MVERQDTDSCLVYGGQQMILTGQNFTS-ESKVVFTEKTTDGQQIWEMEATVDKDKSQPNM 62
Query: 281 IVLKTPAYKSFEINDPVHVKIQLVTKKDI-SEPYNFMLTPL 320
+ ++ P Y++ I PV V ++ K S+P +F P+
Sbjct: 63 LFVEIPEYRNKHIRTPVKVNFYVINGKRKRSQPQHFTYHPV 103
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 31.9 bits (72), Expect = 0.23
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 536 VKPVALSNVKVVIPPASKVTTPPPRPPSHTKPNLATLQRKSTSDKFDSVSTH---DDNIP 592
P A+++ VIP + + P + + +++ F S+ T ++
Sbjct: 277 QDPNAMTDCSDVIPLSKPIPGNGPFSFFPPGKSHSDIEQACAETPFPSLVTLPGPATSVA 336
Query: 593 PLPPKRS 599
+PP ++
Sbjct: 337 RIPPHKA 343
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
monocytogenes [TaxId: 1639]}
Length = 328
Score = 31.1 bits (69), Expect = 0.47
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 416 EKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNN----AVITLDELDDLNNNVNESSVT 471
E E F+ L N L++ LE + E N V+ +EL ++S
Sbjct: 3 EATQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQKEELSSEKQLKLQASYE 62
Query: 472 IEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDR 508
E+ F E + + + N
Sbjct: 63 SIELENFSNEEIRKGLQLALLKGMKHGIQVNHQMTPD 99
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 30.8 bits (69), Expect = 0.51
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 536 VKPVALSNVKVVIPPASKVTTPPPRPPSHTKPNLATLQRKSTSDKFDSVST 586
+L + V+P T P P+ T P L+ S++F +++T
Sbjct: 281 HNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQ--DLELSCPSERFPTLTT 329
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 344
Score = 28.7 bits (63), Expect = 2.6
Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 18/210 (8%)
Query: 59 GRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNG 118
GR A I ++ K Y + + V R + +
Sbjct: 79 GRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNGVQ-------- 130
Query: 119 IFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN 178
F +G+ Y + + Q + N +
Sbjct: 131 -FSRISPDGEEGYPGE--LKVWVTYTLDGGELIVNYRAQASQATPVNLTNHSYFNLAGQA 187
Query: 179 RDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTL--SHVSAPVVG 236
N++ + V + YLP D+ + ++ T DL H+ +
Sbjct: 188 SPNINDHEVTIEADTYLPVDETLIP-----TGEVAPVQGTAFDLRKPVELGKHLQDFHLN 242
Query: 237 DMKMIILCDKVNKDDIEVRFYEEQDGVVVW 266
+ R + G V+
Sbjct: 243 GFDHNFCLKGSKEKHFCARVHHAASGRVLE 272
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.2 bits (60), Expect = 4.3
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 506 IDRNSGGECYEDVLPPQDIPTPPPEVATPPVK 537
+++ + G+ +E +L P P A+ P +
Sbjct: 8 LNKCTSGQSFEVILKPPSFDGVPEFNASLPRR 39
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 25.8 bits (57), Expect = 4.6
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 244 CDKVNKDDIEVRFYEEQDGVVVWDERVKTLE 274
C + + R +DG + ++ ++
Sbjct: 34 CLRFQLPERGSRLCLYEDGTELTEDYFPSVP 64
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 27.7 bits (61), Expect = 6.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 442 FLLIEDSNNAVITLDELDDL----NNNVNESSVT 471
+ + + +N I+LD +DL NN + V
Sbjct: 104 YFAVANVDNKEISLDVTNDLIVWLNNLASWRDVV 137
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor,
FtsY {Escherichia coli [TaxId: 562]}
Length = 84
Score = 25.5 bits (56), Expect = 8.0
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 411 LFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNV-NESS 469
L TKE + F L D EE + LLI D T + +L +
Sbjct: 3 LLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVET-TRKIITNLTEGASRKQL 61
Query: 470 VTIEEVHEFPKEHL 483
E ++ KE +
Sbjct: 62 RDAEALYGLLKEEM 75
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 26.8 bits (59), Expect = 8.1
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 7/69 (10%)
Query: 114 NCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGV 173
I A + S + MK K+ Q C+ + +G
Sbjct: 121 AGVEKILSALEIPDVGNLS----QVVVMKSKNDQGITNK---CKMNLQDNNGNDIGFIGF 173
Query: 174 MGFNNRDNL 182
FNN L
Sbjct: 174 HQFNNIAKL 182
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain
{Human (Homo sapiens), tissue isozyme [TaxId: 9606]}
Length = 131
Score = 26.0 bits (57), Expect = 8.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 147 QAFRLYLQFCQRPFNSEKNS 166
Q F L L F R + + +S
Sbjct: 23 QPFWLTLHFEGRNYQASVDS 42
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 26.0 bits (57), Expect = 8.9
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 520 PPQDIPTPPPEVATPPVKPVALSNVKVVIPPASKVTTPPPRP 561
P +PTP TPP P PP+ + PPP
Sbjct: 98 PAAPVPTPICPTTTPPPPP----------PPSPEAHVPPPYV 129
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 25.4 bits (56), Expect = 9.3
Identities = 14/86 (16%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 372 KEKENDYARVDKSVNINMKPHVTFSQHDTDMETNQVPDVLFDTKEKIDERFEELLNEVSN 431
KE + +++K + + + Q + E+ + + D + +++ +
Sbjct: 25 KEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMM---IPDCQRRLE-------AAYLD 74
Query: 432 LKDTLEEKNDFLLIEDSNNAVITLDE 457
L+ LE + D E+ A + LD
Sbjct: 75 LQRILENEKDLEEAEEYKEARLVLDS 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,513,963
Number of extensions: 120809
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 31
Length of query: 695
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 603
Effective length of database: 1,144,436
Effective search space: 690094908
Effective search space used: 690094908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.6 bits)