BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12711
(639 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242022271|ref|XP_002431564.1| Myeloid differentiation primary response protein MyD88, putative
[Pediculus humanus corporis]
gi|212516867|gb|EEB18826.1| Myeloid differentiation primary response protein MyD88, putative
[Pediculus humanus corporis]
Length = 461
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 144/301 (47%), Gaps = 41/301 (13%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMD--------IKAP 288
++DY KIP+ A++ T+ +L+ L K + + + RD+RGL L+ I+A
Sbjct: 5 TLDYSKIPLIALKKTTQNILSAGLNQHKIIPNNDGIPRDWRGLGHLIGLNGVEMGWIEAT 64
Query: 289 PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCL-YY 347
P+P + W K+ N+ ++L+ IDRFDV DD FIE + L Y
Sbjct: 65 PDP-----FSALLNHWGKNG-------NLNLLQNYLKIIDRFDVLDDAKQFIESNSLEYA 112
Query: 348 ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQ-FNTQ 406
+N N+ N D ++T +DV L G YDA +LY E D + A + T
Sbjct: 113 KNLNSLNTSVANVNLESDKVILTTDDVIRLENGMEPQIYDAYILYAEEDVNFATEIIETM 172
Query: 407 LNKMGFTVCDKDNSFLTG-QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLTQYAEA 464
+K +C +D + G QFEH A + + +RC ++V++S +F+ + +A+A
Sbjct: 173 ESKYNLKLCVRDRDLIGGVQFEHDAITKLIAERCKRLVVVVSPNFLKSKANKFFVTFAQA 232
Query: 465 KHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHY-------ASNMEQFWDRLYYSLK 517
+D K+IPIL + + V +L++Y A+ + FW++L S++
Sbjct: 233 LGLD-IRERKVIPIL---------YEKCIVPPELSYYFCLDYSRANKLWNFWEKLRDSIQ 282
Query: 518 G 518
Sbjct: 283 A 283
>gi|399574162|gb|AFP49300.1| myeloid differentiation factor 88 [Litopenaeus vannamei]
Length = 475
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 43/296 (14%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI--------KAPPNPNCED 295
P+ + P ++Q + KL K L+ E RD+RGLA+ + K P +C
Sbjct: 12 PVRILSPASKQYMATKLDSRKILLVNEGIHRDWRGLAEQAGLDVNSICSGKISPTEHCLH 71
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED---CLYYENTRL 352
L W + L I +LE +DRFDV DD + I D C+ T+
Sbjct: 72 L-------WGQKGGL------IGQLWTYLEAMDRFDVIDDTLQMIYADYDKCM----TQS 114
Query: 353 GNSISKNGACMD---------DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQF 403
G ++ D D ++T++D+ +L+ G GL HYDAL+L+ + D D ++
Sbjct: 115 GGALMAVPPPFDQRVPQVAEQDSQILTVDDLNNLSKGLGLQHYDALVLFADEDIDFVQEM 174
Query: 404 NTQL-NKMGFTVCDKDNSFLTG-QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLTQ 460
+L + +C K+ + G QFE + ++ +M+RCT VIV++S F+ +S T
Sbjct: 175 LEKLEGEYNLKLCHKNRDLIGGLQFESESIVKLIMERCTRVIVVLSPEFLESSTNTFFTL 234
Query: 461 YAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+A A +D +IP L + +C L + A +W++L SL
Sbjct: 235 FAHALSVDQR-RRIVIPCLYK-PCVKPAVISFCHSLDY-YRAKGYWNYWEKLRDSL 287
>gi|307203736|gb|EFN82696.1| Myeloid differentiation primary response protein MyD88
[Harpegnathos saltator]
Length = 287
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 25/298 (8%)
Query: 238 MDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--------P 289
MD +P+ A+ +++QV++ L K L S RD+RGLA L++ A
Sbjct: 1 MDLSTMPLVALSAESKQVVSMLLNPTKHLPSENGLPRDWRGLAYLLEFSAKVISLLSSHS 60
Query: 290 NPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYEN 349
NP + M + E +++T I F +E I R+D+ DD E+D + Y
Sbjct: 61 NPTIQ--MLTILEQKQQNTT-------IKDFQKIMEQISRWDIVDDTEDIFEKDAIRYLE 111
Query: 350 TRLGNSISKNGACMD-DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLN 408
+ +S N + D ++T DV L G +YDA LLY D A + +L
Sbjct: 112 EKQRAQVSANIIEQNIDKKILTQGDVHRLREGLETEYYDAFLLYANEDVSFASEMVEKLE 171
Query: 409 K-MGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAK 465
+ +C KD + G FEH A ++++ +RC V++++S F+ ++ YA+A
Sbjct: 172 REYKLKLCLKDRDLVAGITFEHEAVMKIIYERCNRVLIIISPDFLVSAANKFFMNYAQAL 231
Query: 466 HIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGV 523
ID T H KIIP L + L+Y L N + FW RL S++ + V
Sbjct: 232 SID-TRHRKIIPCLYKRCELPMQ-LKYMFILDYNR--RGLYDFWGRLRDSIQALNSNV 285
>gi|408368245|gb|AFU61120.1| myeloid differentiation factor 88 [Fenneropenaeus chinensis]
Length = 477
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 43/296 (14%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI--------KAPPNPNCED 295
P+ + P ++Q + KL K L+ E RD+RGLA+ + K P +C
Sbjct: 12 PVRILSPASKQYMATKLDSRKILLVNEGIHRDWRGLAEQAGLDVNSICSGKISPTEHCLH 71
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED---CLYYENTRL 352
L W + L I +LE +DRFDV DD + I D C+ T+
Sbjct: 72 L-------WGQKGGL------IGQLWTYLEAMDRFDVIDDTLQMIYVDYDKCM----TQS 114
Query: 353 GNSISKNGACMD---------DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQF 403
G +++ D D ++T++D+ +L+ G L HYDAL+L+ + D D ++
Sbjct: 115 GGALTAVPPPFDQRVPQIAEQDSQILTVDDLNNLSKGLELQHYDALVLFADEDIDFVQEM 174
Query: 404 NTQL-NKMGFTVCDKDNSFLTG-QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLTQ 460
+L + +C K+ + G QFE + ++ +M+RCT VIV++S F+ +S T
Sbjct: 175 LEKLEGEYNLKLCHKNRDLIGGLQFESESIVKLIMERCTRVIVVLSPEFLESSTNTFFTL 234
Query: 461 YAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+A A ID +IP L + +C L + A +W++L SL
Sbjct: 235 FAHALSIDQR-RRIVIPCLYK-PCVKPAVISFCHSLDY-YRAKGYWNYWEKLRDSL 287
>gi|158292884|ref|XP_314167.4| AGAP005252-PA [Anopheles gambiae str. PEST]
gi|157017202|gb|EAA09478.4| AGAP005252-PA [Anopheles gambiae str. PEST]
Length = 462
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 32/307 (10%)
Query: 235 EDSMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP------ 288
++ +D +P+EA+ +TR+++ + L + S + Y RD+RG+ D++ I
Sbjct: 14 KNRIDLAVVPLEALSSRTRELVAELLNHKRIFTSEDGYFRDWRGVFDVIGIPKSFLPLVS 73
Query: 289 --PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC-- 344
PNP + + + W + + N+A L CIDR+D+ DD E D
Sbjct: 74 TNPNPT-----RCLLDLWQSETHQCKREPNLAELQCVLGCIDRWDILDDTSKMFERDAEQ 128
Query: 345 -LYYENTRLGNSISKNGACMD----DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
L E R + A D +IT +D YDA +L+ +AD +
Sbjct: 129 FLLREQKRAAQRGRETEATESKVSADSDIITRDDTSDHK-----QQYDAFILFADADIEF 183
Query: 400 AKQFNTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHS 457
A + +L G +C +D L G FEH +++ +RC V+V++S F+ + L
Sbjct: 184 ASKMVDKLEARGLQLCLRDRDILGGSNFEHEVISRLISERCRRVVVIISKAFLASPLNDF 243
Query: 458 LTQYAEAKHIDHTIHSKIIPILCSDDYFSV-GFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+A+A I+ K+IP C D + L+Y +L + N+ FWD+L S+
Sbjct: 244 TVTFAQALQIEQKAR-KVIP--CVYDRCELPPHLRYTCRLDYQR-SQNLYNFWDKLAESI 299
Query: 517 KGVGKGV 523
+ + V
Sbjct: 300 RDTPRKV 306
>gi|399574166|gb|AFP49302.1| myeloid differentiation factor 88 [Litopenaeus vannamei]
Length = 475
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 45/297 (15%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI--------KAPPNPNCED 295
P+ + P ++Q + KL K L+ E RD+RGLA+ + K P +C
Sbjct: 12 PVRILSPASKQYMATKLDSRKILLVNEGIHRDWRGLAEQAGLDVNSICSGKISPTEHCLH 71
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED---CLYYENTRL 352
L W + L I +LE +DRFDV DD + I D C+ T+
Sbjct: 72 L-------WGQKGGL------IGQLWTYLEAMDRFDVIDDTLQMIYADYDKCM----TQS 114
Query: 353 GNSISKNGACMD---------DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQF 403
G ++ D D ++T++D+ +L+ G GL HYDAL+L+ + D D ++
Sbjct: 115 GGALMAVPPPFDQRVPQVAEQDSQILTVDDLNNLSKGLGLQHYDALVLFADEDIDFVQEM 174
Query: 404 NTQL-NKMGFTVCDKDNSFLTG--QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLT 459
+L + +C K N L G QFE + ++ +M+RCT VIV++S F+ +S T
Sbjct: 175 LEKLEGEYNLKLCHK-NRDLIGCLQFESESIVKLIMERCTRVIVVLSPEFLESSTNTFFT 233
Query: 460 QYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+A A +D +IP L + +C L + A +W++L SL
Sbjct: 234 LFAHALSVDQR-RRIVIPCLYK-PCVKPAVISFCHSLDY-YRAKGYWNYWEKLRDSL 287
>gi|270004856|gb|EFA01304.1| Myd88 [Tribolium castaneum]
Length = 400
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 130/287 (45%), Gaps = 21/287 (7%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLM---- 297
++PI +RPKT+ +L D L + P R +RGLA L I +PN E +
Sbjct: 9 EVPITVLRPKTKALLCDLLNPQMFMPGPNGVLRYWRGLAGLCQI----SPNYEASLVNDS 64
Query: 298 ---KKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGN 354
K+ + W + D + L FLE +DRFDV DD + I+ED Y+ G
Sbjct: 65 NPTDKVLQLWYEK---DPQRCTVQQLLLFLEEMDRFDVADDVLDLIDEDIKLYKANPQGY 121
Query: 355 SISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNK-MGFT 413
+ K D +IT +DV +N G L YDA LLYD D + A + ++ K G
Sbjct: 122 EL-KPLYSEADKYIITTDDVIRINEGRDLEIYDAFLLYDHDDIEFAIELLDRMEKEYGMK 180
Query: 414 VCDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIH 472
C KD + G E I+++ RC ++V++S F +S +A A I+
Sbjct: 181 FCVKDRDLVGGGLEMDKMIKLITHRCNRLVVILSDSFFKSSANEYYLSFAHAYGIES--Q 238
Query: 473 SKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGV 519
KIIP + + + ++ L A+ WD+L S++ V
Sbjct: 239 RKIIPCIYKNLTTNPPHMKCLFTLDFQRMAAF--NVWDKLRDSIRVV 283
>gi|157107641|ref|XP_001649871.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|157131975|ref|XP_001662388.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|108868667|gb|EAT32892.1| AAEL014869-PA [Aedes aegypti]
gi|108871328|gb|EAT35553.1| AAEL012284-PA [Aedes aegypti]
Length = 103
Score = 95.9 bits (237), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 58/85 (68%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
N + RTFVFE EGHT G+V+ I+ YP+V+F GY+VPHPA+ ++ RIQ +I
Sbjct: 12 NSGEHSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAARNVRAI 71
Query: 161 DILKKGIKELESACDRITETFNDAM 185
DILK+G+++LE CD ETF A+
Sbjct: 72 DILKRGLEDLERVCDHTIETFEGAV 96
>gi|322786972|gb|EFZ13196.1| hypothetical protein SINV_03562 [Solenopsis invicta]
Length = 428
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 19/290 (6%)
Query: 238 MDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLM 297
MD +P+ A +RQV+ L +K L S RD+RGLA L+++ +P L+
Sbjct: 1 MDLSTVPLVATTVVSRQVIATMLNPMKVLPSDNGLPRDWRGLAHLLEL----SPELVSLL 56
Query: 298 KKMFEDWTKSSTL---DRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTRL 352
+ TL ++ I F +E +DR+D+ DD E D Y R
Sbjct: 57 VSHSDPLMHMFTLLEKNQKNITIKNFQVMMEQMDRWDIIDDTEALFESDAERYLEHQQRA 116
Query: 353 GNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL-NKMG 411
S C D ++T+ D+ L G +YDA LLY E D D A + +L +
Sbjct: 117 QVSAEPIDECADQ-EILTLGDIHRLKQGLETQYYDAFLLYAEEDIDFATEMVDKLETQFN 175
Query: 412 FTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDH 469
+C KD + G +FEH A ++++ +RC +++++S F+ +S Y +A I+
Sbjct: 176 LKLCLKDRDLVAGVEFEHEAVMKLISERCNRLLIIVSPSFLKSSANKFFLNYTQALSIEK 235
Query: 470 TIHSKIIPILCSDDYFSVGF-LQYCVKLKLNHYASNMEQFWDRLYYSLKG 518
KIIP + Y S LQ L++ + FW +L S++
Sbjct: 236 R-QRKIIPCI----YKSCELPLQLKYIFNLDYNRKGLYDFWGKLRDSIQA 280
>gi|312371539|gb|EFR19699.1| hypothetical protein AND_21955 [Anopheles darlingi]
Length = 758
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 26/296 (8%)
Query: 239 DYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPN-----PNC 293
D K P+ A+ ++R++L L + S E Y RD+RG D+ I P N
Sbjct: 324 DLAKTPLIALSDRSRELLAGLLNQRRIFTSEEGYFRDWRGAFDV--IGVPKRFLALVENN 381
Query: 294 EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY---ENT 350
K + E W + S + N+A L CIDR+DV DD EED + + + T
Sbjct: 382 ASPAKCLLELWDQESANCKRPANLAQLQEVLGCIDRWDVVDDTSKSFEEDAVKFLLKKQT 441
Query: 351 RLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKM 410
+ + ++D +IT +D YDA +LY + D + A + T+L K
Sbjct: 442 STRVELKQTTDDLEDMDIITRDDTHEHK-----QQYDAFILYADQDIEFASKLVTKLEKR 496
Query: 411 GFTVCDKDNSFLT-GQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHID 468
G +C +D L G EH+ I+++ +RC ++VL+S F+ + L +A A I+
Sbjct: 497 GMRLCLRDRDILAGGNCEHAVLIRLITERCRRLVVLISQAFLESPLYTFTVTFAHALQIE 556
Query: 469 HTIHSKIIPILCSDDYFSV-GFLQYCVKLKLNHYASNME--QFWDRLYYSLKGVGK 521
K+IP C + V L++ L Y E FWD+L S++ K
Sbjct: 557 KR-QRKVIP--CVIEKCEVPQHLKFTFMLD---YLRQRELFNFWDKLTDSVRDPAK 606
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 234 YEDS-MDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMD-------- 284
++DS +D +P++A+ ++R++L L S E Y RD+RG +++
Sbjct: 11 FDDSQIDLANVPLQALSHRSRELLYTLLNQQHIFTSEEGYFRDWRGAFEVIGVPRRFFVL 70
Query: 285 IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC 344
++ P+P K + E W + +R N+A L CIDR+DV DD D
Sbjct: 71 VENSPSP-----AKCLLELWVQEDC-ERPA-NLAQLQEVLGCIDRWDVVDDTSEMFRNDA 123
Query: 345 LYYENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFN 404
L +L N A + D ++T +D YDA +LY + + + A +
Sbjct: 124 L-----KLLRDQQMNPADLVDMHIMTRDDSHDHQ-----QQYDAFVLYADQNVEFATKMV 173
Query: 405 TQLNKMGFTVCDKDNSFLTG 424
L G +C KD L G
Sbjct: 174 ATLENRGMRLCLKDRDILVG 193
>gi|328708261|ref|XP_001948320.2| PREDICTED: myeloid differentiation primary response protein
MyD88-like [Acyrthosiphon pisum]
Length = 364
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
S D+ I I +R TR+ L+ L K + SPE RD+RGL L++ P + D
Sbjct: 10 SEDFANILISVLRLPTRERLSCMLNATKVIPSPEKLPRDWRGLCTLLNYTIPSGCDPTDP 69
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY-ENTRLGNS 355
+ K+F+ +T IA F LE IDR+DV ++ D Y+ E L
Sbjct: 70 IGKIFKFCEAKTT-------IAHFTRCLERIDRYDVVEETEELFISDIKYFKEQCSLAKY 122
Query: 356 ISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL-NKMGFTV 414
+ D ++IT++D+ S + G L YDA LLYD+AD A +L +
Sbjct: 123 PTPVVPNDFDINIITLDDINSSSNGLPLTRYDAFLLYDKADIQSAAAVVEKLETDYKLKL 182
Query: 415 CDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIH 472
C KD G FE+ + I+++ DRC +I+++S F N+ + Y ++ I+ +
Sbjct: 183 CLKDRDLRPGVMFEYQSIIKLISDRCNWLIIIVSNDFSNSPWNRFIVNYIQSLAIEKRL- 241
Query: 473 SKIIPILCSDDYFSVGFLQYCVKLKLNHY 501
KIIP + DD L+ V L N Y
Sbjct: 242 PKIIPCV-FDDCVLPEELKCYVHLYFNKY 269
>gi|307170866|gb|EFN62977.1| Myeloid differentiation primary response protein MyD88 [Camponotus
floridanus]
Length = 422
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 135/291 (46%), Gaps = 22/291 (7%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP------PN 290
++D +P+ I ++Q++ L K L S RD+RGLA L+++ +
Sbjct: 2 TVDLSTVPLVGISAVSKQIITAMLNPKKVLSSDNGLPRDWRGLAHLLELNGEIMSLLVSH 61
Query: 291 PNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENT 350
+ M M E K+ T I F +E +DR+D+ DD + D + Y
Sbjct: 62 SDPTTYMLTMLEKNKKNIT-------IKNFQTMMEEMDRWDIIDDTEAIFQNDAVKYLEQ 114
Query: 351 RLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLN-K 409
+ +S + D V+T+ DV L+ G +YDA LLY + D + +L +
Sbjct: 115 QQRAQVSADLIDSVDQEVLTLGDVHRLSQGLETQYYDAFLLYADEDVSFVNEMVQKLEAE 174
Query: 410 MGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHI 467
+C KD + G FEH A ++++ +RC +++++S +F+ +S YA+A I
Sbjct: 175 YKLKLCLKDRDLVGGVAFEHEAVMKLISERCNRLLIIISPNFLKSSANKFFLNYAQALSI 234
Query: 468 DHTIHSKIIPILCSDDYFSVGF-LQYCVKLKLNHYASNMEQFWDRLYYSLK 517
+ K+IP C + + F L+Y L N + FWD+L+ S+K
Sbjct: 235 EKR-QRKLIP--CIYESCELPFQLKYISTLDYNRRG--LYNFWDKLHDSIK 280
>gi|240849101|ref|NP_001155573.1| DNA-directed RNA polymerase I 16 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|239791842|dbj|BAH72334.1| ACYPI004493 [Acyrthosiphon pisum]
Length = 106
Score = 92.8 bits (229), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 60/79 (75%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVFE EGHT GS++T++L+S+PE DF YS+ HP++ +I++R++VK+G+ DI K+G
Sbjct: 18 RTFVFEDEGHTLGSLLTYVLESFPETDFCAYSIRHPSENKIYLRLKVKNGHSVEDIFKRG 77
Query: 167 IKELESACDRITETFNDAM 185
+EL + + +TFN A+
Sbjct: 78 FQELNQILNHVKKTFNKAI 96
>gi|345481326|ref|XP_001604778.2| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Nasonia vitripennis]
Length = 107
Score = 92.4 bits (228), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF+ EGHT G+V+ I+ YP+V+F GY+VPHPA+ ++ RIQ K G ++DIL++G
Sbjct: 18 RTFVFQDEGHTLGNVLRSIVAHYPDVEFCGYTVPHPAEAKMHFRIQAKKG-RAVDILRRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++L CD +TF AM
Sbjct: 77 LEDLSKVCDHTIKTFEKAM 95
>gi|332025025|gb|EGI65212.1| Myeloid differentiation primary response protein MyD88 [Acromyrmex
echinatior]
Length = 431
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 135/291 (46%), Gaps = 20/291 (6%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNP---NC 293
++D +P+ A +RQV+ L +K L S RD+RGLA ++ + +
Sbjct: 2 TIDLSTVPLVAATVASRQVIATMLNPVKVLPSDNGLPRDWRGLAHQLEFNSKFVSMLVSH 61
Query: 294 EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLG 353
D ++F + T + D F I F +E +DR+D+ DD + D Y +
Sbjct: 62 SDPTMRIFTELTDKNKKD---FTIKDFQAMMEQMDRWDIIDDTEALFQSDAEKYLEHQQR 118
Query: 354 NSISKNGACMD---DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLN-K 409
+S + MD D ++T++D+ L G +YDA LLY E D K+ +L +
Sbjct: 119 AQVSADP--MDECTDKKILTLDDIHRLKQGLAPQYYDAFLLYAEEDIVFVKEMIEKLEIQ 176
Query: 410 MGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHI 467
+C KD + G +FEH A ++++ +RC +++++S + M +S Y +A I
Sbjct: 177 FKLKLCLKDRDLVAGLEFEHEAVMELISERCNRLLIIVSPNLMTHSANKFFLNYTQALSI 236
Query: 468 DHTIHSKIIPILCSDDYFSVGF-LQYCVKLKLNHYASNMEQFWDRLYYSLK 517
+ KIIP C + F L+Y L N + FW RL S++
Sbjct: 237 EKR-QRKIIP--CIYKSCDLPFQLKYIFNLDYNR--KGLFDFWGRLRDSIQ 282
>gi|442614153|gb|AGC65453.1| myeloid differentiation factor 88 [Scylla paramamosain]
Length = 472
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 139/296 (46%), Gaps = 43/296 (14%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI--------KAPPNPNCED 295
P+ + P TR+ + +L K L++ + RD+RG+A+ ++ K P +C
Sbjct: 12 PVRILSPSTRKHMACRLDSRKILLASQGIHRDWRGVAEQAELDVGSISSGKISPTEHCLH 71
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED---CLYYENTRL 352
L+ + K S + ++LE +DRFDV DD I D C+ L
Sbjct: 72 LLGQ------KGSLM-------GQLWNYLEAMDRFDVIDDTRDMIYADYDKCMKEGGGAL 118
Query: 353 G------NSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQ 406
+ + + A DD +++T++D K+L+LG GL Y AL+L+ + D D ++ +
Sbjct: 119 TALPPPMDQLVTDVAAYDD-NILTVDDRKNLSLGLGLQQYTALVLFADEDIDFVQEMVEK 177
Query: 407 L-NKMGFTVCDKDNSFLTG-QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLTQYAE 463
L + G +C KD + G QFE + ++ +++RC VIV++S F+ ++ +A
Sbjct: 178 LEGEYGLKLCLKDRDLIGGLQFESDSIVRLIIERCMRVIVILSPEFLASNANKFFVLFAH 237
Query: 464 AKHIDHTIHSKIIPIL---CSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
A ID +IP L C+ + +C L + A +W++L SL
Sbjct: 238 ALSIDQR-RRIVIPCLYKPCT----KPPVISFCHSLDY-YRAKGYWNYWEKLRDSL 287
>gi|118790581|ref|XP_318678.2| AGAP009644-PA [Anopheles gambiae str. PEST]
gi|116118014|gb|EAA14103.3| AGAP009644-PA [Anopheles gambiae str. PEST]
Length = 105
Score = 91.7 bits (226), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
N + RTFVFE EGHT G+V+ I+ YP+V+F GY+VPHPA+ ++ RIQ +I
Sbjct: 12 NSGESSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAAKSVRAI 71
Query: 161 DILKKGIKELESACDRITETFNDAM 185
D+L++G+++LE CD +TF A+
Sbjct: 72 DVLRRGLEDLERVCDHTIDTFEAAV 96
>gi|170067791|ref|XP_001868621.1| myd88 [Culex quinquefasciatus]
gi|167863841|gb|EDS27224.1| myd88 [Culex quinquefasciatus]
Length = 435
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 28/308 (9%)
Query: 236 DSMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLAD--------LMDIKA 287
D ++ +IP+ +R T ++L L K S + Y RD+RGL + +++A
Sbjct: 12 DRINLGEIPVSVLRQATFKLLAVLLNKKKIFKSEDGYYRDWRGLFQAIPLENHYIAEVEA 71
Query: 288 PPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY 347
+P C KK+FE W +T + V ++ + L IDR+DV DD ED Y
Sbjct: 72 DADP-C----KKIFELWKIKATKEGKVPSLLELQNILGIIDRWDVVDDSNKLFREDAEQY 126
Query: 348 --ENTRLGNSISKNG-----ACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLA 400
E R+ IS N ++ V + + + YDA +L+ +AD + A
Sbjct: 127 LAEKQRVHLPISANQLIETEQLSNNQQVADDDIITKDDTIYKKQIYDAFVLFADADIEFA 186
Query: 401 KQFNTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSL 458
+ ++ + +C KD L G FEH+ ++++ +RC +IV+ S F+ + L +
Sbjct: 187 SKIVHKMEERNLKLCLKDRDVLAGISFEHNVLVKLISERCNRLIVVFSKEFLKSPLNEFV 246
Query: 459 TQYAEAKHIDHTIHSKIIPILCSDDYFSV-GFLQYCVKLKLNHYASNMEQFWDRLYYSLK 517
YA+A I+ + KI+P C + + L+Y L + ++ +WD+L S+K
Sbjct: 247 VTYAQAMQIEQKLR-KILP--CVYERIELPPALKYTTILDYKR-SEHLFNYWDKLESSIK 302
Query: 518 GVGKGVPE 525
V K P+
Sbjct: 303 -VRKDPPK 309
>gi|170045373|ref|XP_001850286.1| myd88 [Culex quinquefasciatus]
gi|167868446|gb|EDS31829.1| myd88 [Culex quinquefasciatus]
Length = 435
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 28/308 (9%)
Query: 236 DSMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLAD--------LMDIKA 287
D ++ +IP+ +R T ++L L K S + Y RD+RGL + +++A
Sbjct: 12 DRINLGEIPVSVLRQATFKLLAVLLNKKKIFKSEDGYYRDWRGLFQAIPLENHYIAEVEA 71
Query: 288 PPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY 347
+P C KK+FE W +T + V ++ + L IDR+DV DD ED Y
Sbjct: 72 DADP-C----KKIFELWKIKATKEGKVPSLLELQNILGIIDRWDVVDDSNKLFREDAEQY 126
Query: 348 --ENTRLGNSISKNG-----ACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLA 400
E R+ IS N ++ V + + + YDA +L+ +AD + A
Sbjct: 127 LAEKQRVHLPISANQLIETEQLSNNQQVADDDIITKDDTIYHKQIYDAFVLFADADIEFA 186
Query: 401 KQFNTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSL 458
+ ++ + +C KD L G FEH+ ++++ +RC +IV+ S F+ + L +
Sbjct: 187 SKIVHKMEERNLKLCLKDRDVLAGISFEHNVLVKLISERCNRLIVVFSKEFLKSPLNEFV 246
Query: 459 TQYAEAKHIDHTIHSKIIPILCSDDYFSV-GFLQYCVKLKLNHYASNMEQFWDRLYYSLK 517
YA+A I+ + KI+P C + + L+Y L + ++ +WD+L S+K
Sbjct: 247 VTYAQAMQIEQKLR-KILP--CVYERIELPPALKYTTILDYKR-SEHLFNYWDKLESSIK 302
Query: 518 GVGKGVPE 525
V K P+
Sbjct: 303 -VRKDPPK 309
>gi|195475006|ref|XP_002089777.1| GE22390 [Drosophila yakuba]
gi|194175878|gb|EDW89489.1| GE22390 [Drosophila yakuba]
Length = 535
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 136/309 (44%), Gaps = 41/309 (13%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMFED 303
P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 80 PLSALGIETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLIS 139
Query: 304 WTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACM 363
WT+ S V ++ HFL IDR+DV DD + +D Y + + AC
Sbjct: 140 WTQRSPQTAKVGHLE---HFLGIIDRWDVCDDIQENLAKDTQRYIMKQEQRQTALVEACP 196
Query: 364 DDPS------------------------VITIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
PS +++ ED + + +G L Y+A +LY EAD D
Sbjct: 197 PPPSDFFETNNNYSSSNSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEADIDH 256
Query: 400 AKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN---N 452
A + N + + + + L G FEH M RC +IVL++ F+ N
Sbjct: 257 ATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVLLTEEFLRSPEN 316
Query: 453 SLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA-SNMEQFWDR 511
+ L + TQ + + +HT KIIPIL + L + +N+ A S + FWD+
Sbjct: 317 TYLVNFTQKIQIE--NHT--RKIIPILYKMNMHIPQTL--GIYTHMNYAADSKLFNFWDK 370
Query: 512 LYYSLKGVG 520
L SL V
Sbjct: 371 LARSLYDVN 379
>gi|194863204|ref|XP_001970327.1| GG10565 [Drosophila erecta]
gi|190662194|gb|EDV59386.1| GG10565 [Drosophila erecta]
Length = 545
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 42/310 (13%)
Query: 239 DYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMK 298
++ + P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M
Sbjct: 85 NFNETPLSALGIETRNQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMD 144
Query: 299 KMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISK 358
+ W++ S V ++ HFL IDR+DV DD + +D + + +
Sbjct: 145 LVLISWSQRSPQTAKVGHLE---HFLGIIDRWDVCDDIQENLAKDTQRFIIKQEQRQTAL 201
Query: 359 NGACMDDPS-----------------------VITIEDVKSLNLGCGLAHYDALLLYDEA 395
AC PS +++ ED + + +G L Y+A +LY EA
Sbjct: 202 VEACPPPPSDCLETNNNYSSSSKNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEA 261
Query: 396 DFDLAKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN 451
D D A + N + + + + L G FEH M RC +IV+++ F+
Sbjct: 262 DIDHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLR 321
Query: 452 ---NSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNME 506
N+ L + TQ + + +HT KIIPIL D L +K YA S +
Sbjct: 322 SPENTYLVNFTQKIQIE--NHT--RKIIPILYKTDMHIPQTLGIYTHIK---YAGDSKLF 374
Query: 507 QFWDRLYYSL 516
FWD+L SL
Sbjct: 375 NFWDKLARSL 384
>gi|156538248|ref|XP_001602490.1| PREDICTED: myeloid differentiation primary response protein MyD88
[Nasonia vitripennis]
Length = 417
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 19/288 (6%)
Query: 243 IPIEAIRPKTRQVLNDKLCDIKQLMS---PENYQRDYRGLADLMDIKA---PPNPNCEDL 296
+P+ A+ P+ + +++ L K + + RD+RGLA + I P + D
Sbjct: 7 VPLTALSPEVQHLISTFLNPPKVIPAGCGTSGLPRDWRGLAQVCSIGGELMPAIASHADP 66
Query: 297 MKKMFE-DWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY-ENTRLGN 354
K++ + TKS F + + L+ ++R+D+ +D +E D L Y E +
Sbjct: 67 TKRILDIVQTKSQN-----FTLKSLQDALKSLERWDILEDSEPLLERDALLYMERLKKSQ 121
Query: 355 SISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMG-FT 413
++ D ++T +D + G G HYDA LLY D + A++ L K
Sbjct: 122 ETAEGNDYSADAEILTFDDQFRIERGEGKQHYDAFLLYANEDEEFAQEMIENLEKKNHLK 181
Query: 414 VCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTI 471
+C K+ + G FEH A ++++ +RC +I ++S F + YA+A ID
Sbjct: 182 LCLKERDLVPGLSFEHEAIMRLISERCNRLITIISPDFFKSPANKFFLNYAQASGIDKRQ 241
Query: 472 HSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGV 519
KIIP + + Y K+ + + + FWD+L S+K +
Sbjct: 242 ERKIIPCVYKNCELPPQLTYYS---KIYYKQVSPDFFWDKLTRSMKAI 286
>gi|195581856|ref|XP_002080746.1| GD10085 [Drosophila simulans]
gi|194192755|gb|EDX06331.1| GD10085 [Drosophila simulans]
Length = 537
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 135/306 (44%), Gaps = 41/306 (13%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 80 ETPLSALGIETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVL 139
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGA 361
W++ S V ++ HFL IDR+DV DD + +D + + + A
Sbjct: 140 ISWSQRSPQTAKVGHLE---HFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEA 196
Query: 362 CMDDPS----------------------VITIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
C PS +++ ED + + +G L Y+A +LY EAD D
Sbjct: 197 CPPPPSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEADIDH 256
Query: 400 AKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN---N 452
A + N + + + + L G FEH M RC +IV+++ F+ N
Sbjct: 257 ATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLRSPEN 316
Query: 453 SLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNMEQFWD 510
+ L + TQ + + +HT KIIPIL D L +K YA S + FWD
Sbjct: 317 TYLVNFTQKIQIE--NHT--RKIIPILYKTDMHIPQTLGIYTHIK---YAGDSKLFNFWD 369
Query: 511 RLYYSL 516
+L SL
Sbjct: 370 KLARSL 375
>gi|19921906|ref|NP_610479.1| Myd88, isoform A [Drosophila melanogaster]
gi|442622985|ref|NP_001260821.1| Myd88, isoform B [Drosophila melanogaster]
gi|18030014|gb|AAL56570.1|AF422803_1 MyD88 adapter protein [Drosophila melanogaster]
gi|7303909|gb|AAF58953.1| Myd88, isoform A [Drosophila melanogaster]
gi|17862272|gb|AAL39613.1| LD20892p [Drosophila melanogaster]
gi|220943228|gb|ACL84157.1| Myd88-PA [synthetic construct]
gi|220953412|gb|ACL89249.1| Myd88-PA [synthetic construct]
gi|440214220|gb|AGB93354.1| Myd88, isoform B [Drosophila melanogaster]
Length = 537
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 135/306 (44%), Gaps = 41/306 (13%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 80 ETPLSALGIETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVL 139
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGA 361
W++ S V ++ HFL IDR+DV DD + +D + + + A
Sbjct: 140 ISWSQRSPQTAKVGHLE---HFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEA 196
Query: 362 CMDDPS----------------------VITIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
C PS +++ ED + + +G L Y+A +LY EAD D
Sbjct: 197 CPPPPSDCFETNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEADIDH 256
Query: 400 AKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN---N 452
A + N + + + + L G FEH M RC +IV+++ F+ N
Sbjct: 257 ATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLRSPEN 316
Query: 453 SLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNMEQFWD 510
+ L + TQ + + +HT KIIPIL D L +K YA S + FWD
Sbjct: 317 TYLVNFTQKIQIE--NHT--RKIIPILYKTDMHIPQTLGIYTHIK---YAGDSKLFNFWD 369
Query: 511 RLYYSL 516
+L SL
Sbjct: 370 KLARSL 375
>gi|340711269|ref|XP_003394201.1| PREDICTED: myeloid differentiation primary response protein MyD88
[Bombus terrestris]
Length = 430
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 21/301 (6%)
Query: 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNP---NCEDLMKK 299
+P+ ++ +++ V++ L +K L S RD+RGLA + + P + D
Sbjct: 8 VPLASLSIQSKCVISSLLNPLKILPSENGLPRDWRGLAHVCKLSGEIIPLLTSHPDPTAY 67
Query: 300 MFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKN 359
+ W + R + LE I+R+D+ DD E+D Y + S
Sbjct: 68 ILTVWQQQ----RKDITLKDLQTVLEEIERWDILDDTSKLFEKDGERYLEQLQRSQTSAE 123
Query: 360 GACMD-DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL-NKMGFTVCDK 417
D D V+T++D+ L G +YDA LLY + D + A + +L NK +C K
Sbjct: 124 VISNDIDEKVLTVDDIHRLRQGLENQYYDAFLLYADEDVNWATEMLEKLENKYNLKLCVK 183
Query: 418 DNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKI 475
D + G FEH A + ++ +RC +IVL+S +F+ + YA+A ID K+
Sbjct: 184 DRDLIAGVTFEHEAVMTLISERCNRLIVLISNNFLKSPANKFFLSYAQALGIDKR-QRKV 242
Query: 476 IPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKG------VPEWDFA 529
IP L LQY L N + FW +L S++ V K VP DF+
Sbjct: 243 IPCLYEKCKLPPQ-LQYMFVLDYNRVG--LYDFWGKLRDSVQVVNKVEENTNIVPVKDFS 299
Query: 530 S 530
+
Sbjct: 300 N 300
>gi|170029538|ref|XP_001842649.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
gi|167863233|gb|EDS26616.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
Length = 104
Score = 89.7 bits (221), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 55/79 (69%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVFE EGHT G+V+ I+ Y +V+F GY+VPHPA+ ++ RIQ +ID+L++G
Sbjct: 18 RTFVFEDEGHTLGNVLKSIICKYSDVNFCGYTVPHPAENKMHFRIQAARNVRAIDVLRRG 77
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD ETF A+
Sbjct: 78 LEDLERVCDHTIETFEAAI 96
>gi|195332783|ref|XP_002033073.1| GM20612 [Drosophila sechellia]
gi|194125043|gb|EDW47086.1| GM20612 [Drosophila sechellia]
Length = 539
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 39/306 (12%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 80 ETPLSALGIETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVL 139
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGA 361
W++ S V ++ HFL IDR+DV DD + +D + + + A
Sbjct: 140 ISWSQRSPQTAKVGHLE---HFLGIIDRWDVCDDIQENLAKDTQRFIMKQEQRQTALVEA 196
Query: 362 CMDDPS------------------------VITIEDVKSLNLGCGLAHYDALLLYDEADF 397
C PS +++ ED + + +G L Y+A +LY EAD
Sbjct: 197 CPPPPSDCFETNNNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEADI 256
Query: 398 DLAKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNS 453
D A + N + + + + L G FEH M RC +IV+++ F+ +
Sbjct: 257 DHATEIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLRSP 316
Query: 454 LLHSLTQYAEAKHIDHTIHS-KIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNMEQFWD 510
L + + I++ HS KIIPIL D L +K YA S + FWD
Sbjct: 317 ENTYLVNFTQKIQIEN--HSRKIIPILYKTDMHIPQTLGIYTHIK---YAGDSKLFNFWD 371
Query: 511 RLYYSL 516
+L SL
Sbjct: 372 KLARSL 377
>gi|194755182|ref|XP_001959871.1| GF13086 [Drosophila ananassae]
gi|190621169|gb|EDV36693.1| GF13086 [Drosophila ananassae]
Length = 537
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 133/304 (43%), Gaps = 39/304 (12%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ + +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 82 ETPLSELSVETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVL 141
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGA 361
W++ S V ++ FL IDR+DV DD + +D Y R + A
Sbjct: 142 ISWSQRSPQTAKVGHLENFLGI---IDRWDVCDDIQENLAKDTERYHVKREQRQAALVDA 198
Query: 362 CMDDPS--------------------VITIEDVKSLNLGCGLAHYDALLLYDEADFDLAK 401
C PS +++ ED + + +G L Y+A +LY EAD D A
Sbjct: 199 CPPPPSDCLETNNNYSNSITVGQSVQILSDEDQRCVQMGKPLPRYNACVLYAEADIDHAT 258
Query: 402 QF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN---NSL 454
+ N + + + + L G FEH M RC +IV+++ F+ N+
Sbjct: 259 EIMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLRSPENTY 318
Query: 455 LHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNMEQFWDRL 512
L + TQ + + +HT KIIPIL + L +K YA S + FWD+L
Sbjct: 319 LVNFTQKIQIE--NHT--RKIIPILYNPGMHIPQTLGIYTHIK---YAGDSKLFNFWDKL 371
Query: 513 YYSL 516
SL
Sbjct: 372 ARSL 375
>gi|157116787|ref|XP_001658635.1| myd88 [Aedes aegypti]
gi|108876276|gb|EAT40501.1| AAEL007768-PA [Aedes aegypti]
Length = 435
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 132/289 (45%), Gaps = 22/289 (7%)
Query: 238 MDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIK---APPNPNCE 294
+D K+P+ A+ KT ++L+ L K S + Y RD+RGL ++ + N
Sbjct: 15 VDLSKVPLGALNYKTYELLSALLNRKKIFKSEDGYYRDWRGLFQVLKLDNYLVAELENHN 74
Query: 295 DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC---LYYENTR 351
+ K++ + W S N+ + L IDR+DV DD +D L +
Sbjct: 75 NPTKRVLDLWENS----LKGANLKDLQNVLGLIDRWDVLDDSNKLFYDDAEKFLSKTAKQ 130
Query: 352 LGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMG 411
+ + + D +IT +D + YDA +L+ +AD + A + ++ +
Sbjct: 131 VSTDQLEETSIGADEDIITKDDTRQ-----NKQFYDAFILFADADIEFATKIMERMEERK 185
Query: 412 FTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDH 469
+C KD L G FEH A I+++ +RC ++V++S F+ + L + YA+A I+
Sbjct: 186 LKICIKDRDLLAGITFEHEAIIKLISERCRRLVVVISREFLKSPLNNFFVMYAQALQIEQ 245
Query: 470 TIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN-MEQFWDRLYYSLK 517
KIIP + Y + L++ SN + FWD+L ++K
Sbjct: 246 K-KRKIIPCVYERLELPANLKFYFI---LDYKRSNKLYNFWDKLEDAIK 290
>gi|195398063|ref|XP_002057644.1| GJ17990 [Drosophila virilis]
gi|194141298|gb|EDW57717.1| GJ17990 [Drosophila virilis]
Length = 106
Score = 86.7 bits (213), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ +ID+LK+G
Sbjct: 18 RTFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SHRERAIDLLKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD ETF M
Sbjct: 77 LEDLEALCDHTIETFEKEM 95
>gi|24585154|ref|NP_609950.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|7298551|gb|AAF53770.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|113204857|gb|ABI34162.1| IP05502p [Drosophila melanogaster]
Length = 105
Score = 86.7 bits (213), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>gi|195345039|ref|XP_002039083.1| GM17025 [Drosophila sechellia]
gi|195580105|ref|XP_002079896.1| GD21773 [Drosophila simulans]
gi|194134213|gb|EDW55729.1| GM17025 [Drosophila sechellia]
gi|194191905|gb|EDX05481.1| GD21773 [Drosophila simulans]
Length = 106
Score = 86.3 bits (212), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>gi|195115228|ref|XP_002002166.1| GI17231 [Drosophila mojavensis]
gi|193912741|gb|EDW11608.1| GI17231 [Drosophila mojavensis]
Length = 106
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ +ID+LK+G
Sbjct: 18 RTFVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SHRERAIDLLKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD ETF M
Sbjct: 77 LEDLEALCDHTIETFEKEM 95
>gi|295293293|gb|ADF87912.1| MIP21960p [Drosophila melanogaster]
Length = 128
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 38 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 96
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 97 LEDLEGLCDHTIVTFEKEM 115
>gi|195164594|ref|XP_002023131.1| GL21124 [Drosophila persimilis]
gi|198461937|ref|XP_001352281.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
gi|194105216|gb|EDW27259.1| GL21124 [Drosophila persimilis]
gi|198142415|gb|EAL29383.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
Length = 110
Score = 85.9 bits (211), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + ++D+LK+G
Sbjct: 18 RTFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAVDLLKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD +TF M
Sbjct: 77 LEDLEALCDHTIDTFGKEM 95
>gi|442628318|ref|NP_001260562.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
gi|440213919|gb|AGB93097.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
Length = 116
Score = 85.9 bits (211), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 29 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 87
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 88 LEDLEGLCDHTIVTFEKEM 106
>gi|225581054|gb|ACN94631.1| GA10493 [Drosophila miranda]
Length = 110
Score = 85.5 bits (210), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + ++D+LK+G
Sbjct: 18 RTFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAVDLLKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD +TF M
Sbjct: 77 LEDLEALCDHTIDTFGREM 95
>gi|442628320|ref|NP_001260563.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
gi|440213920|gb|AGB93098.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
Length = 132
Score = 85.5 bits (210), Expect = 9e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 45 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 103
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 104 LEDLEGLCDHTIVTFEKEM 122
>gi|195484391|ref|XP_002090674.1| GE12666 [Drosophila yakuba]
gi|194176775|gb|EDW90386.1| GE12666 [Drosophila yakuba]
Length = 106
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRD-RAIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>gi|194879704|ref|XP_001974284.1| GG21646 [Drosophila erecta]
gi|190657471|gb|EDV54684.1| GG21646 [Drosophila erecta]
Length = 106
Score = 85.1 bits (209), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRD-RAIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>gi|195050014|ref|XP_001992809.1| GH13479 [Drosophila grimshawi]
gi|193899868|gb|EDV98734.1| GH13479 [Drosophila grimshawi]
Length = 106
Score = 84.7 bits (208), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ +ID+LK+G
Sbjct: 18 RTFVFNNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ-SHRERAIDLLKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD TF M
Sbjct: 77 LEDLEALCDHTMNTFETEM 95
>gi|260812261|ref|XP_002600839.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
gi|229286129|gb|EEN56851.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
Length = 110
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
TL+ +C+TFV E HT G+ + +++ P+VDF GYSVPHP++ +I +RIQ + G
Sbjct: 3 TLDSDESCQTFVLHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSR-GPP 61
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
+ DIL++G+ EL + C+ + TF A++
Sbjct: 62 AADILRRGLTELNALCEHVQNTFEGAVE 89
>gi|383860668|ref|XP_003705811.1| PREDICTED: myeloid differentiation primary response protein
MyD88-like [Megachile rotundata]
Length = 416
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 28/295 (9%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNP---NC 293
+ D K+P+ A+ KT++V++ L K + + RD+RGLA ++ P +
Sbjct: 2 TTDLSKVPLVALSVKTKEVISTLLNPPKVIPTENGLPRDWRGLAHSSNLSGEILPLLMSH 61
Query: 294 EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLG 353
D + W + D ++ ++ T LE IDR+D+ DD E+D Y ++
Sbjct: 62 SDPSAYILSIWQERQK-DVTLKDLQT---ALEEIDRWDIIDDTSELFEKDAAKYLSSENS 117
Query: 354 NSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKM-GF 412
+ +N D ++T++D+ + G +YDA LLY + D + A +L K
Sbjct: 118 AEVIENEI---DKKILTVDDIYRVRQGLQNQYYDAFLLYADEDENFALMTVEKLEKQYNL 174
Query: 413 TVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHT 470
+C KD + G FEH A + ++ +RC +IV++S +F+ + YA+ I
Sbjct: 175 KLCLKDRDLIGGITFEHQAVMTLISERCNRLIVIVSPNFLKSPANDFFLSYAQGSGICKG 234
Query: 471 IHSKIIPILCSDDYFSVGFLQYCVKLKLNH-----YASNMEQFWDRLYYSLKGVG 520
KIIP L + Q + +LN+ Y + FW+RL S+K V
Sbjct: 235 -QRKIIPCL---------YGQCELPRQLNYMFVLDYKRCLYNFWERLRDSVKTVN 279
>gi|427792851|gb|JAA61877.1| Putative myeloid differentiation primary response protein myd88,
partial [Rhipicephalus pulchellus]
Length = 434
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 37/297 (12%)
Query: 239 DYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCED--L 296
++ IP+ A+ K R +L +L D+ QL+ + RD+RGLA L C+D L
Sbjct: 78 NFQDIPMTAVGLKCRAILAMRL-DVPQLLLGPSGHRDWRGLALLAGF------TCDDVEL 130
Query: 297 MKK--------MFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYE 348
+K+ + E W + + + V + + L C++R+DV DD + +D +Y
Sbjct: 131 LKEREKSPTASLLELW--DTRISQHVATVGHLVQHLMCLERYDVLDDIEAELRQDIEFYR 188
Query: 349 NTRLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLN 408
++G C D VI V+S+ YDA + Y D+ + +L
Sbjct: 189 R-------KQSGGCSD---VIHPPTVRSMRTPI----YDAFVCYTSEDWPFVEMLIDRLE 234
Query: 409 KMGFTVCDKDNSFLTGQFEHSAFIQVMDR-CTCVIVLMSTHFMNNSLLHSLTQYAEAKHI 467
+G + + G ++S F ++M++ C I+++S F+ + ++ E+ HI
Sbjct: 235 PLGLRLFLPNRDLKAGVLQYSTFYELMEKWCRKTIIVLSPEFLQSEECLVQQRFIESIHI 294
Query: 468 DHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQF-WDRLYYSLKGVGKGV 523
K+IP+L + G ++ K+ L + ++ W++L S++ GK +
Sbjct: 295 QQA-QQKLIPVLIKQCTLN-GTIRMVSKINLCDKVPTLAEWNWNKLIESVRCEGKSL 349
>gi|194759330|ref|XP_001961902.1| GF15205 [Drosophila ananassae]
gi|190615599|gb|EDV31123.1| GF15205 [Drosophila ananassae]
Length = 106
Score = 84.0 bits (206), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ ++DILK+G
Sbjct: 18 RTFVFMNEGHTLGNALKTIISRYPEVDFCGYTIPHPTEQKLHFRIQSHRD-RAVDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE+ CD TF M
Sbjct: 77 LEDLEALCDHTIVTFETEM 95
>gi|321477501|gb|EFX88460.1| hypothetical protein DAPPUDRAFT_305569 [Daphnia pulex]
Length = 383
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 134/290 (46%), Gaps = 50/290 (17%)
Query: 247 AIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMFEDWTK 306
++R T L++ L K L++ + + RD+RGLA+LM C+ L+ + E K
Sbjct: 16 SLRTTTLAKLSNMLNPAKVLLTDDGHLRDWRGLAELM--------GCDMLVIQNLE---K 64
Query: 307 SSTLDRSVFNIAT------FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNG 360
+S + + A + +LE +DR+DV DD I +E D LY + + +K
Sbjct: 65 TSNPFAGLISQAKDLTANQLIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ- 122
Query: 361 ACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCD 416
D P ++TI D + + L YDA +LY D + NT + K+ G +C
Sbjct: 123 ---DIPQIVTIGDQEQFSEDGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCL 176
Query: 417 KDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK 474
KD F+ G FEH A +++ +RC V+ + S +F+N+ + ++EA I+ K
Sbjct: 177 KDRDFIAGLPFEHQAVTELISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-K 235
Query: 475 IIPILCSDDYFSVGFLQYCVKLKLNHYASNME--------QFWDRLYYSL 516
I+P + Q C K Y + ++ FWD++ SL
Sbjct: 236 IVPCV----------YQQCDLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 275
>gi|340729491|ref|XP_003403034.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Bombus terrestris]
Length = 108
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TFVF EG+T G+ + ++ P+V+F V HPA+ I++RIQ K+G +IDIL+K
Sbjct: 16 CKTFVFMGEGYTLGNSLVAVISQNPDVEFCACFVNHPAEGNIYLRIQAKNG-KAIDILRK 74
Query: 166 GIKELESACDRITETFNDAMQ 186
G+++ E CD ETFN+A +
Sbjct: 75 GLQDFEKICDHTLETFNNAYE 95
>gi|350411422|ref|XP_003489345.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Bombus impatiens]
Length = 108
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TFVF EG+T G+ + ++ P+V+F V HPA+ I++RIQ K+G +IDIL+K
Sbjct: 16 CKTFVFMGEGYTLGNSLVAVISQNPDVEFCACFVNHPAEGNIYLRIQAKNG-KAIDILRK 74
Query: 166 GIKELESACDRITETFNDAMQ 186
G+++ E CD ETFN+A +
Sbjct: 75 GLQDFEKICDHTIETFNNAYE 95
>gi|452982354|gb|EME82113.1| hypothetical protein MYCFIDRAFT_77593 [Pseudocercospora fijiensis
CIRAD86]
Length = 133
Score = 81.3 bits (199), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FEKE HT G+ + +++ P+V+F GYS+PHP++ + +RIQ DG D+L+KG+
Sbjct: 42 SFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVSVFDVLRKGL 101
Query: 168 KELESACDRITETFNDA 184
++L CD + E F +A
Sbjct: 102 EDLADLCDAVEEKFTEA 118
>gi|307195509|gb|EFN77395.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Harpegnathos saltator]
Length = 101
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+TFVF EGHT G+ + +++ YPEV GY++ HPA+ ++ +RIQ K+G ++ ++LK+G
Sbjct: 11 KTFVFMDEGHTLGNALKYVISQYPEVIMCGYTLQHPAESKMLLRIQTKNG-NAYELLKRG 69
Query: 167 IKELESACDRITETFNDAMQ 186
+++L CD ETF+ A +
Sbjct: 70 LEDLAKMCDHTIETFDKAYE 89
>gi|241613282|ref|XP_002407372.1| myd88, putative [Ixodes scapularis]
gi|215502786|gb|EEC12280.1| myd88, putative [Ixodes scapularis]
Length = 364
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 130/293 (44%), Gaps = 32/293 (10%)
Query: 241 IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLM----DIKAPPNPNCEDL 296
+ IP+ I ++ +L+ +L + L+ P Y RD+RGLA L D E
Sbjct: 14 VDIPLAVIGLRSLSILSSRLDVTQILVGPHGY-RDWRGLAALAGFDRDSVELMGQRGESP 72
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSI 356
+ + + W S +R ++ + LE ++RFDV DD + ++ D + N G
Sbjct: 73 TEALIDAWVAQSRKERVTLHL--LIQNLELLERFDVIDDVMPHLDHDVKLFRNKHSG--- 127
Query: 357 SKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNK--MGFTV 414
D P I+ + + L GC + YDA + Y DF + +L + +G +
Sbjct: 128 -------DLPDSIS-DPLLKLPEGCPV--YDAYVCYTAEDFPFVQTLVEKLERPELGIRL 177
Query: 415 CDKDNSFLTGQFEHSAFIQVMDR-CTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHS 473
+ G +++ F Q+M++ C I++ S F+ + ++ E+ I+
Sbjct: 178 FLPERDLCAGVLKYNTFFQLMEKWCKKTIIIFSPEFLKSHECRMQQKFIESIEIEQA-QQ 236
Query: 474 KIIPIL---CSDDYFSVGFLQYCVKLKLNHYASNMEQF-WDRLYYSLKGVGKG 522
K+IP++ C+ D G ++ K+ L AS + + W+ L S+K G G
Sbjct: 237 KLIPVVIKPCALD----GMIRMISKINLCETASALSHWSWNNLISSIKSSGNG 285
>gi|213402453|ref|XP_002171999.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
gi|212000046|gb|EEB05706.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +KE HT G+ + +++ P+V+F GYS+PHP++ ++ +RIQ K +ID LKKG+
Sbjct: 36 TFQIQKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAKMNLRIQTKSTTTAIDALKKGL 95
Query: 168 KELESACDRITETFNDAM 185
+L CD +TE+FN+ +
Sbjct: 96 DDLMDLCDVVTESFNEQL 113
>gi|240276866|gb|EER40377.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
Length = 137
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 82 ESKQLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGY 137
E +Q+E+ + EL +++ P +F F+KE HT G+ + +++ PEV+F GY
Sbjct: 21 EQEQMEDEDDMIELDGLRISILPGAEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGY 80
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++PHP++ ++ +RIQ D + +L+KG+ +L + CD +TETF +A
Sbjct: 81 TMPHPSEAKMNLRIQTFDTTNVFSVLEKGLDDLMNLCDTVTETFIEA 127
>gi|154272529|ref|XP_001537117.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409104|gb|EDN04560.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 137
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 82 ESKQLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGY 137
E +Q+E+ + EL +++ P +F F+KE HT G+ + +++ PEV+F GY
Sbjct: 21 EQEQMEDEDDMIELDGLRISILPGAEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGY 80
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++PHP++ ++ +RIQ D + +L+KG+ +L + CD +TETF +A
Sbjct: 81 TMPHPSEAKMNLRIQTFDTTNVFSVLEKGLDDLMNLCDTVTETFIEA 127
>gi|325095094|gb|EGC48404.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 137
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 82 ESKQLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGY 137
E +Q+E+ + EL +++ P +F F+KE HT G+ + +++ PEV+F GY
Sbjct: 21 EQEQMEDEDDMIELDGLRISILPGAEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGY 80
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++PHP++ ++ +RIQ D + +L+KG+ +L + CD +TETF +A
Sbjct: 81 TMPHPSEAKMNLRIQTFDTTNVFSVLEKGLDDLMNLCDTVTETFIEA 127
>gi|66802584|ref|XP_635164.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
gi|74851461|sp|Q54ES6.1|RPC19_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpc19
gi|60463480|gb|EAL61665.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
Length = 116
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+P+C TF+F E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + +
Sbjct: 32 RPDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQES 91
Query: 163 LKKGIKELESACDRITETFNDAM 185
L +G+ +++ I ETFN+A+
Sbjct: 92 LLQGLTDIKDISRHIFETFNNAL 114
>gi|402077371|gb|EJT72720.1| DNA-directed RNA polymerase I and III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 157
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 56/83 (67%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F+KEGHT G+ + +I+ PEV+ Y++PHP++ ++ +RIQ DG +I+ L
Sbjct: 65 PTAASFEFQKEGHTLGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYDGTTAIEAL 124
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+KG+++L+ CD +T+ F A +
Sbjct: 125 EKGLRDLQDLCDVVTDKFTVAKE 147
>gi|383859164|ref|XP_003705066.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Megachile rotundata]
Length = 108
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TF+F+ EG+T G+ + I+ P+V+F V HPA+ I++RIQ K G ++DILKK
Sbjct: 16 CKTFIFKNEGYTLGNALVTIILQNPDVEFCACFVNHPAEGNIYLRIQAKKG-KAVDILKK 74
Query: 166 GIKELESACDRITETFNDAMQ 186
G+++ E CD E+FN+A +
Sbjct: 75 GLQDFEKICDYTLESFNNAYE 95
>gi|350411882|ref|XP_003489479.1| PREDICTED: myeloid differentiation primary response protein
MyD88-like [Bombus impatiens]
Length = 391
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 124/298 (41%), Gaps = 54/298 (18%)
Query: 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMFE 302
+P+ ++ +++ V++ L +K L S RD+RGLA + +K
Sbjct: 8 VPLVSLSAQSKCVISSLLNPLKILPSENGLPRDWRGLAHVCKLK---------------- 51
Query: 303 DWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGAC 362
I+R+D+ DD E+D Y + S
Sbjct: 52 ------------------------IERWDILDDTSKLFEKDGERYLEQLQRSQTSAEVIS 87
Query: 363 MD-DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL-NKMGFTVCDKDNS 420
D D V+T++D+ L G +YDA LLY D + A + +L NK +C KD
Sbjct: 88 NDIDEKVLTVDDIHRLRQGLENQYYDAFLLYAAEDVNWATEMLEKLENKYNLKLCVKDRD 147
Query: 421 FLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPI 478
+ G FEH A + ++ +RC +IVL+S +F+ + YA+A ID K+IP
Sbjct: 148 LIAGVTFEHEAIMTLISERCNRLIVLISNNFLKSPANKFFLSYAQALGIDKR-QRKVIPC 206
Query: 479 LCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKG------VPEWDFAS 530
L LQY L N + FW +L S++ V K VP DF++
Sbjct: 207 LYEKCKLPPQ-LQYMFVLDYNRVG--LYDFWGKLRDSVQVVNKVEENTSIVPVKDFSN 261
>gi|261190999|ref|XP_002621908.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239590952|gb|EEQ73533.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239613144|gb|EEQ90131.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327354788|gb|EGE83645.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 142
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 65 IPTSTSSVNTSLCINYMES--------KQLENSSPVWELRDNTLNVKPNCR----TFVFE 112
+P ST S + S+ +S +Q+E+ EL + + P +F F+
Sbjct: 1 MPASTHSQDESMPDAAPQSHEQEPQHQEQIEDEEDTIELDGQRITILPGAAETAASFQFD 60
Query: 113 KEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELES 172
KE HT G+ + +++ PEV+F GY++PHP++ ++ +RIQ D + ++L+KG +L
Sbjct: 61 KEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTNVFEVLEKGFDDLMD 120
Query: 173 ACDRITETFNDA 184
CD +TETF +A
Sbjct: 121 LCDTVTETFMEA 132
>gi|242025436|ref|XP_002433130.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
gi|212518671|gb|EEB20392.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
Length = 103
Score = 80.1 bits (196), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF+ EGHT G+ + ++ Y EV F GY++PHP++ +I RIQ G ++DILKKG
Sbjct: 17 RTFVFDGEGHTLGNALRSVISRYSEVTFCGYTIPHPSEEKINFRIQTS-GARAVDILKKG 75
Query: 167 IKELESACDRITETFNDAMQ 186
+ +LE C+ I F+ ++
Sbjct: 76 LTDLEEHCEYIMNVFSQEVE 95
>gi|225554760|gb|EEH03055.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Ajellomyces capsulatus G186AR]
Length = 137
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 82 ESKQLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGY 137
E +Q+E+ + EL +++ P +F F+KE HT G+ + +++ PEV+F GY
Sbjct: 21 EQEQVEDEDDMIELDGLRISILPGAEETAASFQFDKEDHTLGNALRYVIMKNPEVEFCGY 80
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++PHP++ ++ +RIQ D + +L+KG+ +L + CD +TETF +A
Sbjct: 81 TMPHPSEAKMNLRIQTFDTTNVFSVLEKGLDDLMNLCDTVTETFIEA 127
>gi|380023098|ref|XP_003695366.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Apis florea]
Length = 108
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TFVF EG+T G+ + ++ P V+F V HPA+ I++RIQ K G +IDILKK
Sbjct: 16 CKTFVFMGEGYTLGNSLVSVISQNPNVEFCACFVNHPAEGNIYLRIQAKKG-KAIDILKK 74
Query: 166 GIKELESACDRITETFNDA 184
G+++ E CD E+FN+A
Sbjct: 75 GLEDFEKICDHTLESFNNA 93
>gi|198458499|ref|XP_001361065.2| GA15226 [Drosophila pseudoobscura pseudoobscura]
gi|198136363|gb|EAL25641.2| GA15226 [Drosophila pseudoobscura pseudoobscura]
Length = 474
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 43/313 (13%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
S + + P+ + TR L L K L S E Y+RD+RG+A L + +
Sbjct: 9 SGGFNQTPLSELSADTRNQLARMLNRKKVLHSEEGYERDWRGIAALAHQRGFVEEYANNP 68
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYE-------- 348
M + W++ + + HFL IDR+DV DD + +D Y
Sbjct: 69 MDLVLSSWSQRNP---ETAKVGHLEHFLGIIDRWDVCDDIQENLTKDTRRYNVRQEQQQA 125
Query: 349 -------NTRLGNSISKNGACMDDPSVITI---------EDVKSLNLGCGLAHYDALLLY 392
T + + +K+ A + + IT+ +D + + +G L Y+A +LY
Sbjct: 126 LVEAHRPPTVIETNNNKSSANNTNTNNITVGQSVQILSDDDQRCVQMGQPLPRYNACVLY 185
Query: 393 DEADFDLAKQFNTQL--NKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTH 448
EAD D A + L + + + L G FEH M RC +IV+++
Sbjct: 186 AEADIDHATEIMNHLESERYNLKLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEE 245
Query: 449 FMN---NSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--S 503
F+ N+ L + TQ + + +HT KIIPIL D L +K YA S
Sbjct: 246 FLRSPENTYLVNFTQKIQIE--NHT--RKIIPILYKPDMHIPQTLGIYTHIK---YAGDS 298
Query: 504 NMEQFWDRLYYSL 516
+ FWD+L SL
Sbjct: 299 KLYNFWDKLARSL 311
>gi|198419255|ref|XP_002121265.1| PREDICTED: similar to LOC494863 protein [Ciona intestinalis]
Length = 109
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TF+ E HT G+ + +IL P+++F GYS+PHPA+ ++ +RIQ + G + + LKK
Sbjct: 23 CCTFIIHNEDHTLGNALRYILMKNPDIEFCGYSIPHPAENKMNLRIQTR-GISATEALKK 81
Query: 166 GIKELESACDRITETFNDAMQ 186
G+K+L S C+ I +TF +++
Sbjct: 82 GLKDLNSVCEHILKTFESSVK 102
>gi|110758571|ref|XP_001121462.1| PREDICTED: probable DNA-directed RNA polymerases I and III subunit
RPAC2-like [Apis mellifera]
Length = 108
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TFVF EG+T G+ + ++ P V+F V HPA+ I++RIQ K G +IDILKK
Sbjct: 16 CKTFVFMGEGYTLGNSLVSVISQNPNVEFCACFVNHPAEGNIYLRIQAKRG-KAIDILKK 74
Query: 166 GIKELESACDRITETFNDA 184
G+++ E CD E+FN+A
Sbjct: 75 GLEDFEKICDHTLESFNNA 93
>gi|453083599|gb|EMF11644.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Mycosphaerella populorum SO2202]
Length = 134
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FEKE HT G+V+ +++ P+V+F GYS+PHP++ + +RIQ D ++L+KG+
Sbjct: 42 SFAFEKEDHTLGNVLRYLISKNPDVEFVGYSIPHPSEAFMNLRIQTWDNVSVFEVLRKGL 101
Query: 168 KELESACDRITETF 181
++LE CD I E F
Sbjct: 102 QDLEDMCDVIEEKF 115
>gi|225709232|gb|ACO10462.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 79.3 bits (194), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+CRTF+F+ E HT G+ + ++ P+V F GYS+PHPA+ Q+ +RIQ + D L+
Sbjct: 20 SCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMLLRIQTVSSVPTQDALR 79
Query: 165 KGIKELESACDRITETFNDAM 185
+G+++L+ C ++ FN A+
Sbjct: 80 RGLEDLKDMCSVVSSKFNSAL 100
>gi|332016284|gb|EGI57197.1| Putative DNA-directed RNA polymerases I and III subunit RPAC2
[Acromyrmex echinatior]
Length = 103
Score = 79.0 bits (193), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFVF+ EGHT G+ + ++ YP V G++VPHPA+ ++ + IQ G + I +LK+G+
Sbjct: 13 TFVFDDEGHTLGNALASVINEYPGVKICGHTVPHPAENRMHLNIQTT-GENVIQVLKRGL 71
Query: 168 KELESACDRITETFNDAMQ 186
++LE CD ETFN A +
Sbjct: 72 QDLERMCDHTIETFNKAYE 90
>gi|189235040|ref|XP_973419.2| PREDICTED: similar to myd88 [Tribolium castaneum]
Length = 376
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLM---- 297
++PI +RPKT+ +L D L + P R +RGLA L I +PN E +
Sbjct: 9 EVPITVLRPKTKALLCDLLNPQMFMPGPNGVLRYWRGLAGLCQI----SPNYEASLVNDS 64
Query: 298 ---KKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGN 354
K+ + W + D + L FLE +DRFDV DD + I+ED Y+ G
Sbjct: 65 NPTDKVLQLWYEK---DPQRCTVQQLLLFLEEMDRFDVADDVLDLIDEDIKLYKANPQGY 121
Query: 355 SISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNK-MGFT 413
+ K D +IT +DV +N G L YDA LLYD D + A + ++ K G
Sbjct: 122 EL-KPLYSEADKYIITTDDVIRINEGRDLEIYDAFLLYDHDDIEFAIELLDRMEKEYGMK 180
Query: 414 VCDKDNSFLTGQFEHSA 430
C KD + F S+
Sbjct: 181 FCVKDRDLVGDSFFKSS 197
>gi|398393690|ref|XP_003850304.1| hypothetical protein MYCGRDRAFT_45952, partial [Zymoseptoria
tritici IPO323]
gi|339470182|gb|EGP85280.1| hypothetical protein MYCGRDRAFT_45952 [Zymoseptoria tritici IPO323]
Length = 101
Score = 78.6 bits (192), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 52/77 (67%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FEKE HT G+ + +++ P+V+F GYS+PHP++ + +RIQ DG + +++L+KG+
Sbjct: 10 SFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVNVMEVLRKGL 69
Query: 168 KELESACDRITETFNDA 184
+L CD + E F A
Sbjct: 70 DDLSDMCDAVEEKFTTA 86
>gi|115638551|ref|XP_794921.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Strongylocentrotus purpuratus]
Length = 117
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C TFV E HT G+ + +++ P+V+F GYSVPHP + +I RIQ K G + D+
Sbjct: 26 KSDCVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQTK-GAPAGDV 84
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
KG+ L CD I +TF D +Q
Sbjct: 85 FGKGLANLSEVCDHIQQTFKDTIQ 108
>gi|367028040|ref|XP_003663304.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
gi|347010573|gb|AEO58059.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
Length = 157
Score = 78.6 bits (192), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 55/81 (67%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ +RIQ +G +I+ L
Sbjct: 71 PTAASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNVRIQTFEGTTAIEAL 130
Query: 164 KKGIKELESACDRITETFNDA 184
+KG+++L+ CD +T+ F DA
Sbjct: 131 QKGLRDLQELCDIVTDKFIDA 151
>gi|225678511|gb|EEH16795.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 201
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 53/77 (68%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F++E HT G+ + +++ PEV+F GY++PHP++ ++ +RIQ D +I +L+KG
Sbjct: 115 SFQFDREDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTTAIAVLEKGF 174
Query: 168 KELESACDRITETFNDA 184
+L CD +TETF +A
Sbjct: 175 DDLMELCDVVTETFTEA 191
>gi|225709920|gb|ACO10806.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+CRTF+F+ E HT G+ + ++ P+V F GYS+PHPA+ Q+ +RIQ + D L+
Sbjct: 20 SCRTFIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMPLRIQTVSSVPAQDALR 79
Query: 165 KGIKELESACDRITETFNDAM 185
+G+++L+ C ++ FN A+
Sbjct: 80 RGLEDLKDMCSVVSSKFNSAL 100
>gi|195380175|ref|XP_002048846.1| GJ21092 [Drosophila virilis]
gi|194143643|gb|EDW60039.1| GJ21092 [Drosophila virilis]
Length = 465
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 130/303 (42%), Gaps = 29/303 (9%)
Query: 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKK 299
+ + P+ + +TR+ L L K L S E Y+RD+RG+A L + + M
Sbjct: 18 FNRTPLTELSGETRRQLACMLNRKKVLRSEEGYERDWRGIASLSGQRGYVDEFANMPMDL 77
Query: 300 MFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYE----------- 348
+ W K + V ++ FL IDR+DV DD + +D Y
Sbjct: 78 VLNSWIKHNPQTAEVGHLE---QFLGIIDRWDVRDDIQENLTKDTNRYNIKQQQLEQLAI 134
Query: 349 NTRLGNSIS-------KNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAK 401
+TR + + N + D ++++I+D K L G L Y+A +LY EAD + A
Sbjct: 135 STRDSPTPTVKCLERNNNNSLARDVNLLSIDDEKCLQNGQPLPRYNACVLYAEADIEHAT 194
Query: 402 QFNTQLNKMGFTV---CDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHS 457
L + + + L FEH Q M RC +IV+++ F+ +
Sbjct: 195 DIMNNLESPPYNLKLFLRHRDLLLGVPFEHVELSQFMATRCNHLIVVLTDEFLKSRENTY 254
Query: 458 LTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHY-ASNMEQFWDRLYYSL 516
L + + I++ KIIPIL + L + +N+ S++ FWD+L SL
Sbjct: 255 LVNFTQKLQIENNTR-KIIPILYKHNMIIPQTL--AIYTHVNYTDTSSLFNFWDKLARSL 311
Query: 517 KGV 519
+ V
Sbjct: 312 QDV 314
>gi|307166226|gb|EFN60456.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 107
Score = 77.0 bits (188), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFVF EGHT G+ +++++ YP + Y+VPHPA+ +I IQ G +I++LK+G+
Sbjct: 18 TFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTT-GESAIEVLKRGL 76
Query: 168 KELESACDRITETFNDAMQ 186
++LE CD ETF+ A +
Sbjct: 77 QDLERICDHTIETFDTAYK 95
>gi|115386266|ref|XP_001209674.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
gi|114190672|gb|EAU32372.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
Length = 142
Score = 77.0 bits (188), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 92 VWELRDNTLNVKP----NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQI 147
V EL + + + P +F FE EGHT G+ + + + P+V+F GY++PHP++ ++
Sbjct: 32 VLELEEKRIVILPGATETAASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKM 91
Query: 148 FIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
+RIQ D ++++ L+KG+ L CD +TE F DA
Sbjct: 92 NLRIQTYDTTNAVEALEKGLDSLMDLCDVVTEKFTDA 128
>gi|405969527|gb|EKC34493.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Crassostrea
gigas]
Length = 549
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 81 MESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVP 140
ME+ + N + E+ D+ ++ C+TFVF E HT G+ + +++ PEV F GYSVP
Sbjct: 1 METNEQSNKKRL-EVVDSAGSLDETCKTFVFHNEDHTLGNSLRYMVMKNPEVQFCGYSVP 59
Query: 141 HPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
HP++ +I RIQ G D+LKKG+K+L S D +T+
Sbjct: 60 HPSESKINFRIQTH-GELGTDVLKKGLKDLNSKMDADKDTY 99
>gi|91081259|ref|XP_975661.1| PREDICTED: similar to GA10493-PA [Tribolium castaneum]
gi|270005223|gb|EFA01671.1| hypothetical protein TcasGA2_TC007243 [Tribolium castaneum]
Length = 105
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
T + +CRTF+ + EGHT G+ + ++ YP+V+F Y+VPHP + + +RIQ++ G
Sbjct: 9 TKDTDESCRTFILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRSG-R 67
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
++D LK+G+++L + D I + F Q
Sbjct: 68 AVDALKRGLEDLAALSDHILDEFTREKQ 95
>gi|307175199|gb|EFN65277.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 97
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFVF EGHT G+ +++++ YP + Y+VPHPA+ +I IQ G +I++LK+G+
Sbjct: 8 TFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTT-GESAIEVLKRGL 66
Query: 168 KELESACDRITETFNDAMQ 186
++LE CD ETF+ A +
Sbjct: 67 QDLERICDHTIETFDTAYK 85
>gi|195120157|ref|XP_002004595.1| GI19523 [Drosophila mojavensis]
gi|193909663|gb|EDW08530.1| GI19523 [Drosophila mojavensis]
Length = 454
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 25/297 (8%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ + +TR+ L L K L S E Y+RD+RG+A L + + M +
Sbjct: 21 RTPLTELSSETRRQLACMLNRKKVLRSEEGYERDWRGIASLSGQRGYVDEFANMPMDLVL 80
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSIS---- 357
W K + V ++ +L IDR+DV DD + +D Y NT+
Sbjct: 81 NSWIKHNPQTAEVGHLEEYLGI---IDRWDVRDDIQENLIKDTNRY-NTKQQQLEQLEQL 136
Query: 358 -----------KNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQ 406
N + D ++++I+D K L G L Y+A +LY EAD + A
Sbjct: 137 TPTPTVQCVERNNNSLARDVNLLSIDDEKCLQNGQPLPRYNACVLYAEADIEHATDIMNN 196
Query: 407 LNKMGFTV---CDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYA 462
L + + + L FEH Q M RC +IV+++ F+ + L +
Sbjct: 197 LESPPYNLKLFLRHRDLLLGVPFEHVELSQFMATRCNHLIVVLTEEFLKSRENTYLVNFT 256
Query: 463 EAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGV 519
+ I++ KIIPIL + L + S++ FWD+L SL+ V
Sbjct: 257 QKLQIENNTR-KIIPILYKHNMTIPQTLAIYTHVNYTE-TSSLFNFWDKLARSLQDV 311
>gi|116208000|ref|XP_001229809.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
gi|88183890|gb|EAQ91358.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
Length = 155
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 53/78 (67%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ +RIQ DG +++ L
Sbjct: 68 PTAASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNVRIQTFDGTTAVEAL 127
Query: 164 KKGIKELESACDRITETF 181
+KG+++L+ CD +T+ F
Sbjct: 128 EKGLRDLQELCDVVTDEF 145
>gi|195027798|ref|XP_001986769.1| GH21551 [Drosophila grimshawi]
gi|193902769|gb|EDW01636.1| GH21551 [Drosophila grimshawi]
Length = 456
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 28/305 (9%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
S + + P+ + +TR+ L L K L S E Y+RD+RG+A L + +
Sbjct: 11 STGFNRTPLTELSGETRRQLACMLNRKKVLRSEEGYERDWRGIASLSGQREFVDECANMP 70
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--------E 348
M + +W K + V ++ FL IDR+DV DD + +D Y +
Sbjct: 71 MDLVISNWIKHNPQTAEVGHLEEFLGI---IDRWDVRDDIQENLIKDTDRYNVKQQKLEQ 127
Query: 349 NTRLGNSISKNGACMD---------DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
+L +S C++ D ++++ +D K + G L Y+A +LY EAD +
Sbjct: 128 LAQLRDSPPPTDKCVENNNNNTLARDVNLLSFDDEKCMQNGQPLPRYNACVLYAEADIEY 187
Query: 400 AKQFNTQLNKMGFTV---CDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLL 455
A + L + + + L FEH M RC +IV+++ F+ +
Sbjct: 188 AIKIMNNLESPAYNLKLFLRHRDLLLGVPFEHVELSHFMATRCNHLIVVLTEEFLRSREN 247
Query: 456 HSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN-MEQFWDRLYY 514
L + + I++ KIIPIL + L + +N+ AS+ + FWD+L
Sbjct: 248 TFLVNFTQKLQIENN-SRKIIPILYKQNMVIPQTL--AIYTHVNYEASSTLYNFWDKLAR 304
Query: 515 SLKGV 519
SL+ V
Sbjct: 305 SLQDV 309
>gi|196012371|ref|XP_002116048.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
gi|190581371|gb|EDV21448.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
Length = 92
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+ +C+TFV E HT G+ + +++ PE GYSVPHP+ +I +RI+ + D+I++
Sbjct: 7 RQDCQTFVLHGENHTLGNAVRYLIMKNPETKLCGYSVPHPSQHKINLRIETNNEKDAIEV 66
Query: 163 LKKGIKELESACDRITETFN 182
+ G+++L+ CD + +TF+
Sbjct: 67 FRTGLQDLDQVCDHVLKTFD 86
>gi|121703648|ref|XP_001270088.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
gi|119398232|gb|EAW08662.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
Length = 142
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + + PEV+F GY++PHP++ ++ +RIQ D ++++ L+KG+
Sbjct: 52 SFQFEGEGHTLGNALRYTIMKNPEVEFCGYTIPHPSEAKMNLRIQTYDTTNAVEALEKGL 111
Query: 168 KELESACDRITETFNDA 184
+ L CD +T+ F A
Sbjct: 112 EALMDLCDVVTDKFTSA 128
>gi|330799276|ref|XP_003287672.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
gi|325082292|gb|EGC35778.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
Length = 116
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+P+C TF+F E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + +
Sbjct: 32 RPDCATFIFTDEDHTLGNSLHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKGHISAQES 91
Query: 163 LKKGIKELESACDRITETFND 183
L +G+ +++ I +TFN+
Sbjct: 92 LLQGLNDIKDISAHILDTFNN 112
>gi|328865481|gb|EGG13867.1| putative RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 103
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+ +C TF+ +E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + D
Sbjct: 20 RRDCATFIMTEEDHTIGNSLHYVLMKNPKVDFSGYSIPHPSDNKLNLRIQTKGETSAQDA 79
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
+ G+ +++ I ETFNDA+
Sbjct: 80 ILTGLNDIKDIGKHILETFNDAVN 103
>gi|389639282|ref|XP_003717274.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
gi|351643093|gb|EHA50955.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
Length = 149
Score = 75.9 bits (185), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 53/77 (68%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F KEGHT G+ + +I+ PEV+ Y++PHP++ ++ +RIQ +G +I+ L+KG+
Sbjct: 61 SFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYEGTTAIEALEKGL 120
Query: 168 KELESACDRITETFNDA 184
K+L+ CD +T+ F A
Sbjct: 121 KDLQELCDVVTDKFTIA 137
>gi|195154581|ref|XP_002018200.1| GL16895 [Drosophila persimilis]
gi|194113996|gb|EDW36039.1| GL16895 [Drosophila persimilis]
Length = 474
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 126/313 (40%), Gaps = 43/313 (13%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
S + + P+ + TR L L K L S E Y+RD+RG+A L + +
Sbjct: 9 SGGFNQTPLSELSADTRNQLARMLNRKKVLHSEEGYERDWRGIAALAHQRGFVEEYANNP 68
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--------- 347
M + W++ + + HFL IDR+DV DD + +D Y
Sbjct: 69 MDLVLSSWSQRNP---ETAKVGHLEHFLGIIDRWDVCDDIQENLTKDTRRYNVRQEQQQA 125
Query: 348 --ENTRLGNSISKNG-------------ACMDDPSVITIEDVKSLNLGCGLAHYDALLLY 392
E R I N +++ +D + + +G L Y+A +LY
Sbjct: 126 LVEAHRPPTVIETNNNKSSTNNTNTNNITVGQSVQILSDDDQRCVQMGQPLPRYNACVLY 185
Query: 393 DEADFDLAKQFNTQL--NKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTH 448
EAD D A + L + + + L G FEH M RC +IV+++
Sbjct: 186 AEADIDHATEIMNHLESERYNLKLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEE 245
Query: 449 FMN---NSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--S 503
F+ N+ L + TQ + + +HT KIIPIL D L +K YA S
Sbjct: 246 FLRSPENTYLVNFTQKIQIE--NHT--RKIIPILYKPDMHIPQTLGIYTHIK---YAGDS 298
Query: 504 NMEQFWDRLYYSL 516
+ FWD+L SL
Sbjct: 299 KLYNFWDKLARSL 311
>gi|63054500|ref|NP_593118.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe 972h-]
gi|2500635|sp|Q09177.1|RPAC2_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 14 kDa polypeptide
gi|5579416|gb|AAD45538.1|AF079779_1 nuclear RNA polymerases I and III common subunit Rpc19
[Schizosaccharomyces pombe]
gi|6692475|gb|AAF24657.1|AF116919_1 Rpc19 [Schizosaccharomyces pombe]
gi|1255203|gb|AAC49604.1| DNA-directed RNA polymerase I and III 16 kDa polypeptide
[Schizosaccharomyces pombe]
gi|3721850|dbj|BAA33719.1| RPA17 [Schizosaccharomyces pombe]
gi|4126811|dbj|BAA36760.1| RPA17 [Schizosaccharomyces pombe]
gi|159883909|emb|CAB50921.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe]
Length = 125
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +KE HT G+ + +++ PEV+F GYS+PHP++ ++ RIQ ++D+L+KG+
Sbjct: 36 TFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGL 95
Query: 168 KELESACDRITETFNDAM 185
+L CD +TE F + +
Sbjct: 96 DDLIDLCDAVTEKFTEQL 113
>gi|357605525|gb|EHJ64656.1| hypothetical protein KGM_09653 [Danaus plexippus]
Length = 103
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
CRT+VF+ E HT G+ + I+ Y +V F GY+VPHPA+ ++ RIQ ++ ++DILK
Sbjct: 18 TCRTYVFQNESHTLGNALKCIIDRYEDVQFCGYTVPHPAEAKMHFRIQTQET-PTLDILK 76
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L+ C+ + F ++
Sbjct: 77 RGLTDLQKVCEHTIDLFEKEVK 98
>gi|119467720|ref|XP_001257666.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
gi|119405818|gb|EAW15769.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
Length = 142
Score = 74.3 bits (181), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + + PEV+F GY++PHP++ ++ +RIQ D +++ L+KG+
Sbjct: 52 SFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYDSTTAVEALEKGL 111
Query: 168 KELESACDRITETFNDA 184
+ L CD +T+ F A
Sbjct: 112 EALMDLCDVVTDKFTSA 128
>gi|67540776|ref|XP_664162.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|40738708|gb|EAA57898.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|259480131|tpe|CBF70983.1| TPA: DNA-directed RNA polymerase I and III 14 KDA polypeptide
(AFU_orthologue; AFUA_6G04610) [Aspergillus nidulans
FGSC A4]
Length = 137
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + PEV+F GY++PHP++ ++ IRIQ D +++ L+KG+
Sbjct: 47 SFQFEGEGHTLGNALRFAIMKNPEVEFCGYTIPHPSESKMNIRIQTYDSTTAVEALEKGL 106
Query: 168 KELESACDRITETFNDA 184
L CD +T+ F A
Sbjct: 107 DTLMDLCDVVTDKFTAA 123
>gi|258569481|ref|XP_002543544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903814|gb|EEP78215.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 145
Score = 73.9 bits (180), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 84 KQLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGYSV 139
+QLE V ELR + V P +F FEKE HT G+ + +++ P V+F GY++
Sbjct: 31 EQLEEELRVAELRRQRIKVLPGASETAASFQFEKEDHTLGNALRYVIMKNPGVEFCGYTM 90
Query: 140 PHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
PHP++ ++ +RIQ + ++L KG +L CD + ETF A
Sbjct: 91 PHPSEERMNLRIQTYSPANVFEVLDKGFSDLMDLCDVVLETFTAA 135
>gi|50554135|ref|XP_504476.1| YALI0E27676p [Yarrowia lipolytica]
gi|49650345|emb|CAG80079.1| YALI0E27676p [Yarrowia lipolytica CLIB122]
Length = 140
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F +E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +I+ L+KG+
Sbjct: 56 SFQFTEEDHTIGNALQYIIMKNPEVEFCGYSIPHPSEAKLNIRIQTYGDITAIEALQKGL 115
Query: 168 KELESACDRITETFNDAM 185
+L ACD + F DA+
Sbjct: 116 DDLIQACDVVKNKFTDAV 133
>gi|387018232|gb|AFJ51234.1| DNA-directed RNA polymerases I and III subunit RPAC2-like [Crotalus
adamanteus]
Length = 114
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV E HT G+ + +++ PE++F GYS+ HP++ +I RIQ + G +ID +K
Sbjct: 25 CVTFVLNNEDHTLGNSLRYMIMKNPEIEFCGYSITHPSESKINFRIQTRGGLPAIDAFQK 84
Query: 166 GIKELESACDRITETFNDAMQ 186
G+++L C + TF +++
Sbjct: 85 GLEDLTGVCQHVLSTFEASVE 105
>gi|440795586|gb|ELR16706.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 129
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N T E HT G+ + IL PEVDF GYSVPHP++ ++ +RIQ KDG S++ L+
Sbjct: 28 NLITVTLSNEDHTLGNSLRWILMKNPEVDFCGYSVPHPSEPKMNVRIQTKDGKPSVEALR 87
Query: 165 KGIKELESACDRITETFNDAMQCKV 189
KG+ +L S + TF Q V
Sbjct: 88 KGLNDLVSIAEYTLGTFQSEFQMFV 112
>gi|303322216|ref|XP_003071101.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110800|gb|EER28956.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 145
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 85 QLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVP 140
+LE V E + V P +F FE E HT G+ + +I+ P+V+F GY++P
Sbjct: 32 ELEEEIHVAEFEKQRITVLPGASETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMP 91
Query: 141 HPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
HP++ ++ +RIQ + ++L KG+ +L CD +TETF A
Sbjct: 92 HPSETKMNLRIQTYASTNVFEVLDKGLSDLIDLCDVVTETFTTA 135
>gi|358399593|gb|EHK48930.1| hypothetical protein TRIATDRAFT_297692 [Trichoderma atroviride IMI
206040]
Length = 154
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F YS+PHP++ ++ IRIQ DG +++ LKKG+
Sbjct: 67 SFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGT-AVNALKKGL 125
Query: 168 KELESACDRITETF 181
+L+ CD + E F
Sbjct: 126 SDLQDVCDVVAEKF 139
>gi|255945795|ref|XP_002563665.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588400|emb|CAP86508.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 137
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + + P V+F GY++PHP+D ++ +RIQ D +++ L+KG
Sbjct: 47 SFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEALEKGF 106
Query: 168 KELESACDRITETFNDA 184
+L CD +TE F A
Sbjct: 107 DDLMDLCDVVTEKFTAA 123
>gi|350636095|gb|EHA24455.1| hypothetical protein ASPNIDRAFT_40356 [Aspergillus niger ATCC 1015]
Length = 138
Score = 73.2 bits (178), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 65 IPTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNVKP----NCRTFVFEKEGHTFGS 120
+P S S + + Q + + V EL + + V P +F FE EGHT G+
Sbjct: 1 MPASVHSEEQDQSMLDASAPQEQEQTDVLELDEKRIVVLPGSSDTAASFQFEGEGHTLGN 60
Query: 121 VITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITET 180
+ + + PEV+F GY++PHP++ ++ +RIQ + +++ L+KG+ L CD +T+
Sbjct: 61 ALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKGLDTLMDLCDVVTDK 120
Query: 181 FNDA 184
F A
Sbjct: 121 FTTA 124
>gi|325186683|emb|CCA21232.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 897
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+T+VF E HT G+ + +IL P+V+F GY++PHP++ ++ +R+Q + S ++L++
Sbjct: 33 SKTYVFHDEDHTLGNALRYILMRNPKVEFCGYTIPHPSEPKMHLRLQTQKDVASDEVLRE 92
Query: 166 GIKELESACDRITETFNDAMQ-CKVILKLTLLVIQKASKNLRVLVIGSQKHSMMQCRNMD 224
G+++L + E + A++ C L++L IQ ++ + V++ S K + R +
Sbjct: 93 GLQDLYKLSSHLNEVYWKALKACSRASALSMLFIQSCARIMLVIMHRSIKARTL-VRGIS 151
Query: 225 SNH----DVEK 231
+ H DVE+
Sbjct: 152 TKHVPLSDVER 162
>gi|443685824|gb|ELT89297.1| hypothetical protein CAPTEDRAFT_127647, partial [Capitella teleta]
Length = 93
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV E HT G+ + H++ P+V+F GYSVPHP++ +I +RIQ K G ++ +L+K
Sbjct: 14 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTK-GPSAMSVLEK 72
Query: 166 GIKELESACDRITETF 181
G+ +L+ + +TF
Sbjct: 73 GLNDLKKVSKHVLDTF 88
>gi|340522545|gb|EGR52778.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +++ P+V+F YS+PHP++ ++ IRIQ DG +++ LKKG+
Sbjct: 64 SFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDGS-AVNALKKGL 122
Query: 168 KELESACDRITETF 181
+L+ CD + E F
Sbjct: 123 SDLQDVCDVVAEEF 136
>gi|425773962|gb|EKV12287.1| hypothetical protein PDIG_46120 [Penicillium digitatum PHI26]
gi|425782350|gb|EKV20265.1| hypothetical protein PDIP_18050 [Penicillium digitatum Pd1]
Length = 138
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 48/74 (64%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + + P V+F GY++PHP+D ++ +RIQ D +++ L+KG
Sbjct: 48 SFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEALEKGF 107
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 108 NDLMDLCDVVTEKF 121
>gi|385048160|gb|AFI39841.1| myD88, partial [Daphnia pulex]
gi|385048174|gb|AFI39848.1| myD88, partial [Daphnia arenata]
Length = 278
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|385048148|gb|AFI39835.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|385048158|gb|AFI39840.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|385048150|gb|AFI39836.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|134082123|emb|CAK42239.1| unnamed protein product [Aspergillus niger]
Length = 153
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 100 LNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS 159
L +F FE EGHT G+ + + + PEV+F GY++PHP++ ++ +RIQ + +
Sbjct: 55 LGSSDTAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTA 114
Query: 160 IDILKKGIKELESACDRITETFNDA 184
++ L+KG+ L CD +T+ F A
Sbjct: 115 VEALEKGLDTLMDLCDVVTDKFTTA 139
>gi|281200289|gb|EFA74510.1| putative RNA polymerase III subunit [Polysphondylium pallidum
PN500]
Length = 130
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+P+C TF+F E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + D
Sbjct: 24 RPDCATFIFVDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNKMNLRIQTKGNTTAQDA 83
Query: 163 LKKGIKEL----ESACDRITETFN 182
+ G+ ++ +S +RI E N
Sbjct: 84 IMNGLSDIKDISQSVDERIGEESN 107
>gi|385048162|gb|AFI39842.1| myD88, partial [Daphnia pulex]
gi|385048176|gb|AFI39849.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETK----QDIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|340959302|gb|EGS20483.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 164
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV--KDGYDSID 161
P +F F EGHT G+ +++I+ P+V+F Y++PHP++ ++ +RIQ G +I
Sbjct: 69 PTAASFEFLNEGHTLGNALSYIINRNPDVEFCAYAIPHPSENKMNVRIQTFEGSGTTAIQ 128
Query: 162 ILKKGIKELESACDRITETFNDAMQ 186
L+KG+++L+ CD +T+ F +A +
Sbjct: 129 ALEKGLRDLQDLCDVVTDKFIEARE 153
>gi|385048170|gb|AFI39846.1| myD88, partial [Daphnia pulex]
gi|385048172|gb|AFI39847.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|385048152|gb|AFI39837.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETKQ----DIPQIVTIGDQEQFXE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|328779743|ref|XP_396644.4| PREDICTED: myeloid differentiation primary response protein MyD88
[Apis mellifera]
Length = 386
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 120/288 (41%), Gaps = 46/288 (15%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
++D IP+ A+ ++ QV++ L K + RD+RGLA L CE
Sbjct: 2 TIDLSTIPLVALSIESTQVVSSLLNSPKVIPCENKLPRDWRGLAHL----------CE-- 49
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIG-FIEEDCLYYENTRLGNS 355
LE IDR+D+ DD + F+ + Y E + +
Sbjct: 50 ---------------------------LEKIDRWDILDDTLKLFVRDGEKYLEQLQKSQT 82
Query: 356 ISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNK-MGFTV 414
++ + ++TI+D G +YDA +LY + D A + +L K +
Sbjct: 83 SAEKIENDTEIEILTIDDFYRKEQGLSEQNYDAFILYADEDIKFANEMVDKLEKEYNLKL 142
Query: 415 CDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHS 473
C KD FEH A ++++ DRC +IV++S +F+ + YA+A I T
Sbjct: 143 CLKDQLLGGITFEHEAVMKLISDRCNRLIVIISPNFLKSPANKFFLNYAQALGI-GTQQR 201
Query: 474 KIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGK 521
KIIP L LQ+ V L N S FW +L S++ K
Sbjct: 202 KIIPCLYERCRLPPQ-LQFMVILDYNKLVS--YNFWGKLRDSIQVSNK 246
>gi|385048156|gb|AFI39839.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 15/164 (9%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETK----QDIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIP 477
+ +RC V+ + S +F+N+ + ++EA I+ KI+P
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVP 191
>gi|212546343|ref|XP_002153325.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064845|gb|EEA18940.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 135
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 53/77 (68%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F++EGHT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D +I+ L+KG+
Sbjct: 45 SFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQTYDDTTAIEALEKGL 104
Query: 168 KELESACDRITETFNDA 184
+L CD +++ F A
Sbjct: 105 NDLMDLCDVVSDKFTVA 121
>gi|320034951|gb|EFW16893.1| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
posadasii str. Silveira]
gi|392861857|gb|EAS37553.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 145
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 85 QLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVP 140
+LE E + V P +F FE E HT G+ + +I+ P+V+F GY++P
Sbjct: 32 ELEEEIHAAEFEKQRITVLPGASETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMP 91
Query: 141 HPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
HP++ ++ +RIQ + ++L KG+ +L CD +TETF A
Sbjct: 92 HPSETKMNLRIQTYASTNVFEVLDKGLSDLIDLCDVVTETFTTA 135
>gi|358369667|dbj|GAA86281.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus kawachii IFO 4308]
Length = 137
Score = 72.0 bits (175), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 87 ENSSPVWELRDNTLNVKP----NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
E + + EL + + V P +F FE EGHT G+ + + + PEV+F GY++PHP
Sbjct: 22 EEQTDILELDEKRIVVLPGSSDTAASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHP 81
Query: 143 ADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++ ++ +RIQ + +++ L+KG+ L CD +T+ F A
Sbjct: 82 SETKMNLRIQTYETTTAVEALEKGLDTLMDLCDVVTDKFTTA 123
>gi|336257723|ref|XP_003343685.1| hypothetical protein SMAC_08854 [Sordaria macrospora k-hell]
gi|380091918|emb|CCC10647.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 157
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 55/81 (67%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F +E HT G+ + +++ P+V+F Y++PHP++ ++ +RIQ +G +++ L
Sbjct: 64 PTAASFEFLEENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEAL 123
Query: 164 KKGIKELESACDRITETFNDA 184
+KG+++++ CD +++ F +A
Sbjct: 124 RKGLRDIQELCDVVSDKFLEA 144
>gi|242823716|ref|XP_002488115.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218713036|gb|EED12461.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 136
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 87 ENSSPVWELRDNTLNV----KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
EN V E +N + + +F F++EGHT G+ + +++ P V+F GY++PHP
Sbjct: 21 ENGETVIEHGENRITILSGATETAASFQFKEEGHTLGNALRYVIMKNPAVEFCGYTIPHP 80
Query: 143 ADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
++ ++ +RIQ + +I+ L+KG+ +L CD +T+ F A
Sbjct: 81 SEAKMNLRIQTYENTTAIEALEKGLDDLMDLCDVVTDKFTVA 122
>gi|358387089|gb|EHK24684.1| hypothetical protein TRIVIDRAFT_31426 [Trichoderma virens Gv29-8]
Length = 155
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +++ P+V+F YS+PHP++ ++ IRIQ DG +++ LKKG+
Sbjct: 68 SFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTYDG-TAVNALKKGL 126
Query: 168 KELESACDRITETF 181
+L+ CD + E F
Sbjct: 127 SDLQDVCDVVAEEF 140
>gi|451854249|gb|EMD67542.1| hypothetical protein COCSADRAFT_188250 [Cochliobolus sativus
ND90Pr]
gi|452000164|gb|EMD92626.1| hypothetical protein COCHEDRAFT_1174793 [Cochliobolus
heterostrophus C5]
Length = 131
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 51/77 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+ E HT G+ + +I+ P+V+F GYS+PHP++ ++ +RIQ DG +L+KG+
Sbjct: 45 SFQFDGEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGVSVYTVLEKGL 104
Query: 168 KELESACDRITETFNDA 184
++L + CD + + F A
Sbjct: 105 EDLMAMCDVVEKKFTIA 121
>gi|327277356|ref|XP_003223431.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Anolis carolinensis]
Length = 116
Score = 71.6 bits (174), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV E HT G+ + +++ PEV+F GYS+ HP++ +I RIQ K G + ++ +
Sbjct: 24 SCVTFVLHNEDHTLGNSLRYMIMKDPEVEFCGYSITHPSESKINFRIQTKGGIPAAEMFQ 83
Query: 165 KGIKELESACDRITETFNDAMQ 186
KG++EL C + TF +++
Sbjct: 84 KGLEELIGVCQHVLSTFEASVE 105
>gi|221113159|ref|XP_002160299.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Hydra magnipapillata]
Length = 127
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C+TFVF E HT G+ + +++ PEV + GYS PHP++ +I +RIQ + D L+K
Sbjct: 26 CQTFVFHNEDHTIGNSLRYMIMKNPEVQYCGYSNPHPSEPKINLRIQTH-KIAAPDALQK 84
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ +L++ CD + TF ++Q
Sbjct: 85 GLLDLQNVCDHVLATFQKSVQ 105
>gi|238494098|ref|XP_002378285.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|317148865|ref|XP_001822973.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
oryzae RIB40]
gi|220694935|gb|EED51278.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|391872363|gb|EIT81490.1| DNA-directed RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 142
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 50/74 (67%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + + P+V+F GY++PHP++ ++ +RIQ D ++++ L+KG+
Sbjct: 52 SFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEALEKGL 111
Query: 168 KELESACDRITETF 181
L CD +T+ F
Sbjct: 112 DSLMDLCDVVTDKF 125
>gi|124808476|ref|XP_001348323.1| RNA polymerase small subunit, putative [Plasmodium falciparum 3D7]
gi|23497215|gb|AAN36762.1|AE014818_27 RNA polymerase small subunit, putative [Plasmodium falciparum 3D7]
Length = 96
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +IDILK+ +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTT-GKPAIDILKESL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + FN+A++
Sbjct: 76 DDLGNMCDIMLNKFNEALK 94
>gi|148232551|ref|NP_001088155.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Xenopus
laevis]
gi|82180681|sp|Q5XK67.1|RPAC2_XENLA RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|52789423|gb|AAH83053.1| LOC494863 protein [Xenopus laevis]
Length = 114
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GYS+ HP++ +I RIQ ++G +++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL C + TF +++
Sbjct: 82 RGLNELVDVCQHVLNTFETSIK 103
>gi|395537015|ref|XP_003770503.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sarcophilus harrisii]
Length = 114
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 91 PVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIR 150
PV E+ NC TFV E HT G+ + +++ PEV+F GYS+ HP++ +I R
Sbjct: 9 PVLEMV-QAAGTDGNCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFR 67
Query: 151 IQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
IQ K+G +++ ++G+ EL C + F +++
Sbjct: 68 IQTKEGLPAVEPFRQGLNELMDVCQHVLNKFEASIK 103
>gi|440468859|gb|ELQ37993.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae Y34]
gi|440487550|gb|ELQ67333.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae P131]
Length = 151
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV--KDGYDSIDILKK 165
+F F KEGHT G+ + +I+ PEV+ Y++PHP++ ++ +RIQ +G +I+ L+K
Sbjct: 61 SFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYATEGTTAIEALEK 120
Query: 166 GIKELESACDRITETFNDA 184
G+K+L+ CD +T+ F A
Sbjct: 121 GLKDLQELCDVVTDKFTIA 139
>gi|322699006|gb|EFY90771.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium acridum CQMa 102]
Length = 154
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ IRIQ G ++D LKKG+
Sbjct: 67 SFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGT-AVDALKKGL 125
Query: 168 KELESACDRITETF 181
+L+ CD +++ F
Sbjct: 126 ADLQDVCDVVSDEF 139
>gi|407922733|gb|EKG15828.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 126
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +I+ P V+F GYS+PHP++ ++ +RIQ D D+L+KG+
Sbjct: 43 SFEFENEDHTLGNALRYIIMKNPSVEFCGYSIPHPSEAKMNLRIQTYDDVSVYDVLEKGL 102
Query: 168 KELESACDRITETF 181
+L CD + + F
Sbjct: 103 DDLAELCDVVIDKF 116
>gi|330932673|ref|XP_003303866.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
gi|311319853|gb|EFQ88038.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
Length = 126
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+ E HT G+ + +I+ P+V+F GYS+PHP++ ++ +RIQ DG +L+KG+
Sbjct: 40 SFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEKGL 99
Query: 168 KELESACDRITETFNDA 184
++L + CD + + F A
Sbjct: 100 EDLMAMCDVVEQKFTIA 116
>gi|85084361|ref|XP_957305.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
gi|28918394|gb|EAA28069.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
Length = 156
Score = 71.2 bits (173), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 54/81 (66%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F E HT G+ + +++ P+V+F Y++PHP++ ++ +RIQ +G +++ L
Sbjct: 63 PTAASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEAL 122
Query: 164 KKGIKELESACDRITETFNDA 184
+KG+++++ CD +++ F +A
Sbjct: 123 RKGLRDIQDLCDVVSDKFLEA 143
>gi|402588033|gb|EJW81967.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein,
partial [Wuchereria bancrofti]
Length = 110
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 91 PVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIR 150
P+++L ++ P+ T + +E HT G+ + H+L +V+F GY+VPHP + +I IR
Sbjct: 7 PLFQLDADSFRSDPSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIR 66
Query: 151 IQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
+Q K G + + L KG +ELES I + F +
Sbjct: 67 LQTKRGVSAANTLMKGFEELESIFASIRQKFGSS 100
>gi|385048164|gb|AFI39843.1| myD88, partial [Daphnia parvula]
Length = 278
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQSSLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C K+ F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKERDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|321478705|gb|EFX89662.1| hypothetical protein DAPPUDRAFT_40279 [Daphnia pulex]
Length = 86
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+TF+F+ EGHT G+ I I+ P+V F GY++PHP++ ++ +RI+ K +ID L++G
Sbjct: 2 KTFIFKGEGHTLGNAIRTIILKNPDVIFCGYTIPHPSENKLHLRIETKS-ISAIDALREG 60
Query: 167 IKELESACDRITETF 181
+++L++ D I +TF
Sbjct: 61 LEQLQNLSDHILKTF 75
>gi|302660638|ref|XP_003021996.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
gi|291185920|gb|EFE41378.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
Length = 147
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D + +L+KG+
Sbjct: 60 SFQFEDEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEKGL 119
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 120 NDLMDLCDVVTEKF 133
>gi|346971331|gb|EGY14783.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
dahliae VdLs.17]
Length = 146
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+ EGHT G+ + +I+ P+V+F YS+PHP++ + IRIQ DG ++ L KG+
Sbjct: 60 SFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDG-TAVSALSKGL 118
Query: 168 KELESACDRITETF 181
K+L+ CD +T+ F
Sbjct: 119 KDLQGLCDVMTDEF 132
>gi|302410981|ref|XP_003003324.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
gi|261358348|gb|EEY20776.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
Length = 146
Score = 70.9 bits (172), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+ EGHT G+ + +I+ P+V+F YS+PHP++ + IRIQ DG ++ L KG+
Sbjct: 60 SFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTYDG-TAVSALSKGL 118
Query: 168 KELESACDRITETF 181
K+L+ CD +T+ F
Sbjct: 119 KDLQGLCDVMTDEF 132
>gi|327295865|ref|XP_003232627.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464938|gb|EGD90391.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 147
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D + +L+KG+
Sbjct: 60 SFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEKGL 119
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 120 SDLMDLCDVVTEKF 133
>gi|366999324|ref|XP_003684398.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
gi|357522694|emb|CCE61964.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
Length = 130
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 69 TSSVNTSLCINYMESKQLE--NSSPVWELRDNTLNVKPNC-------RTFVFEKEGHTFG 119
+ V TS ++ ME + + V + ++ + + PN +F +E HT G
Sbjct: 2 SDEVQTSKPVDEMEVDSVPEVDEVDVNAVDEDKIKILPNATSPDGTSASFQISEEDHTLG 61
Query: 120 SVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITE 179
+ + HI+ PEV+F GYS+PHP++ + +RIQ +++ L+KG+K+L CD + E
Sbjct: 62 NALRHIIMKNPEVEFCGYSIPHPSETLLNLRIQTYGNTTAVEALQKGLKDLMDMCDVVEE 121
Query: 180 TF 181
F
Sbjct: 122 KF 123
>gi|315045149|ref|XP_003171950.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
gi|311344293|gb|EFR03496.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
Length = 157
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D D L+KG+
Sbjct: 70 SFQFEAEDHTLGNALRYMIMKNPDVEFCGYTMPHPSEAKLNLRIQTYDSTDVFTALEKGL 129
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 130 DDLMDLCDVVTEKF 143
>gi|317035305|ref|XP_001396609.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
niger CBS 513.88]
Length = 138
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 65 IPTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNV----KPNCRTFVFEKEGHTFGS 120
+P S S + + Q + + V EL + + V +F FE EGHT G+
Sbjct: 1 MPASVHSEEQDQSMLDASAPQEQEQTDVLELDEKRIVVLLGSSDTAASFQFEGEGHTLGN 60
Query: 121 VITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITET 180
+ + + PEV+F GY++PHP++ ++ +RIQ + +++ L+KG+ L CD +T+
Sbjct: 61 ALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEKGLDTLMDLCDVVTDK 120
Query: 181 FNDA 184
F A
Sbjct: 121 FTTA 124
>gi|156378249|ref|XP_001631056.1| predicted protein [Nematostella vectensis]
gi|156218089|gb|EDO38993.1| predicted protein [Nematostella vectensis]
Length = 85
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV E HT G+ + +I+ P+V F GYS+PHP++ +I +RIQ G + D+L+
Sbjct: 3 SCMTFVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQTH-GTPASDVLR 61
Query: 165 KGIKELESACDRITETF 181
+G+ EL + C+ F
Sbjct: 62 RGLSELTAMCEHALAAF 78
>gi|126308959|ref|XP_001380567.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Monodelphis domestica]
Length = 134
Score = 70.5 bits (171), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ PEV+F GYS+ HP++ +I RIQ K G +++ +
Sbjct: 42 NCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKGGLPAVEPFR 101
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL C + F +++
Sbjct: 102 QGLNELMDVCQHVLNKFEASIK 123
>gi|50293019|ref|XP_448942.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528255|emb|CAG61912.1| unnamed protein product [Candida glabrata]
Length = 137
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F +E HT G+ + +I+ PEV+F GYS+PHP++ + +RIQ ++D L+K
Sbjct: 56 CASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNLRIQTYGNITAVDALQK 115
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ +L CD + + F +Q
Sbjct: 116 GLDDLIDLCDAVKDKFVQRLQ 136
>gi|326484083|gb|EGE08093.1| DNA-directed RNA polymerase I and III polypeptide [Trichophyton
equinum CBS 127.97]
Length = 147
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D + +L+KG+
Sbjct: 60 SFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEKGL 119
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 120 SDLMDLCDIVTEKF 133
>gi|385048168|gb|AFI39845.1| myD88, partial [Daphnia parvula]
Length = 278
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQSXLQETKQ----DIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C K+ F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKERDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|346324843|gb|EGX94440.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Cordyceps
militaris CM01]
Length = 162
Score = 70.1 bits (170), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F +EGHT G+ + +I+ P+V+F Y++PHP++ ++ +RIQ +G +ID LKKG+
Sbjct: 75 SFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNVRIQTYEG-TAIDALKKGL 133
Query: 168 KELESACDRITETF 181
+L+ CD + + F
Sbjct: 134 DDLQQVCDVVADEF 147
>gi|296810458|ref|XP_002845567.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
gi|238842955|gb|EEQ32617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
Length = 144
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D + +L+KG+
Sbjct: 57 SFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTVLEKGL 116
Query: 168 KELESACDRITETF 181
+L CD +TE F
Sbjct: 117 SDLMDLCDVVTEKF 130
>gi|345560677|gb|EGX43802.1| hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC
24927]
Length = 141
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C +F FE E HT G+ + I+ P+V+F GYS+PHP++ ++ +RIQ + D L
Sbjct: 52 SCASFQFENEDHTLGNALRWIIMKNPQVEFCGYSIPHPSETKMNMRIQTYGEITAKDALI 111
Query: 165 KGIKELESACDRITETF 181
KG+ +L CD +T+ F
Sbjct: 112 KGLADLRDLCDVVTDKF 128
>gi|385048166|gb|AFI39844.1| myD88, partial [Daphnia parvula]
Length = 278
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K B P ++TI D + +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQSXLQETKQ----BIPQIVTIGDQEQFSE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C K+ F+ G FEH A ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKERDFIAGLPFEHQAVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|443730362|gb|ELU15913.1| hypothetical protein CAPTEDRAFT_128661, partial [Capitella teleta]
Length = 94
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK--DGYDSIDIL 163
C TFV E HT G+ + H++ P+V+F GYSVPHP++ +I +RIQ K + S+ +L
Sbjct: 12 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGTNRVISMSVL 71
Query: 164 KKGIKELESACDRITETF 181
+KG+ +L+ + +TF
Sbjct: 72 EKGLNDLKKVSKHVLDTF 89
>gi|432880437|ref|XP_004073697.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oryzias latipes]
Length = 142
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
+ +C TFV E HT G+ + +++ P+VDF GY++ HP++ +I RIQ + G ++
Sbjct: 18 GAQEDCVTFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGVPAV 77
Query: 161 DILKKGIKELESACDRITETF 181
+ L+KG+ +L C + TF
Sbjct: 78 EPLQKGLSDLHQVCQHVLNTF 98
>gi|345328398|ref|XP_001514864.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Ornithorhynchus anatinus]
Length = 114
Score = 70.1 bits (170), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ PEV+F GYS+ HP++ +I RIQ + G +++ +
Sbjct: 22 NCVTFVLHDEDHTLGNSLRYMVMKNPEVEFCGYSITHPSESKINFRIQTRGGLPAVEPFR 81
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL C + F +++
Sbjct: 82 QGLNELTDVCQHVLNKFEASVK 103
>gi|322707085|gb|EFY98664.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 155
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ IRIQ G ++D LKKG+
Sbjct: 68 SFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYSGT-AVDALKKGL 126
Query: 168 KELESACDRITETF 181
+L+ CD +++ F
Sbjct: 127 VDLQDVCDVVSDEF 140
>gi|341877867|gb|EGT33802.1| hypothetical protein CAEBREN_16714 [Caenorhabditis brenneri]
Length = 138
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ T + +E HT G+ I HIL EV+F GY+VPHP + +I R+Q +DG +++++L
Sbjct: 52 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTRDGINALEVL 111
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K + +E I E F ++ +
Sbjct: 112 MKAFESVEKIFSTIREKFEESYE 134
>gi|17553746|ref|NP_499132.1| Protein RPAC-19 [Caenorhabditis elegans]
gi|464673|sp|P34476.1|RPAC2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|3877824|emb|CAA80165.1| Protein RPAC-19 [Caenorhabditis elegans]
Length = 144
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 66 PTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHI 125
P T V+ +N K++E P + P+ T + +E HT G+ I HI
Sbjct: 26 PQETPQVDDEEDLNVPSKKKMEILDP------KSFEQDPSNLTLIMYEEDHTIGNSIKHI 79
Query: 126 LQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
L EV+F GY+VPHP + +I R+Q KDG +++++L K + +E I F ++
Sbjct: 80 LSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEES 138
>gi|189190328|ref|XP_001931503.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973109|gb|EDU40608.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 126
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 51/77 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+ E HT G+ + +I+ P+V+F GYS+PHP++ ++ +RIQ DG +L+KG+
Sbjct: 40 SFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEKGL 99
Query: 168 KELESACDRITETFNDA 184
++L + CD + + + A
Sbjct: 100 EDLMAMCDIVEQKYTIA 116
>gi|255713672|ref|XP_002553118.1| KLTH0D09350p [Lachancea thermotolerans]
gi|238934498|emb|CAR22680.1| KLTH0D09350p [Lachancea thermotolerans CBS 6340]
Length = 146
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F +E HT G+ + +I+ P+V+F GYS+PHP++ + +RIQ + ++++L+K
Sbjct: 64 CASFQISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEVLQK 123
Query: 166 GIKELESACDRITETF 181
G+++L CD + + F
Sbjct: 124 GLQDLMDLCDAVEDKF 139
>gi|116781945|gb|ABK22308.1| unknown [Picea sitchensis]
gi|224285983|gb|ACN40703.1| unknown [Picea sitchensis]
Length = 107
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P TF F E HT G+ + ++L P V+F GYS+PHP+D ++ IR+Q G + D+L
Sbjct: 9 PRSSTFAFNDEDHTLGNSLRYVLNHDPRVEFCGYSIPHPSDNRVNIRVQTT-GDPAKDVL 67
Query: 164 KKGIKELESACDRITETFNDAM 185
K +++L C ++ +TF A+
Sbjct: 68 KDALQDLMVVCQQVRQTFGKAV 89
>gi|402222155|gb|EJU02222.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 148
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E+E HT G+ + ++ P+V+F GYS+PHP++++I +RIQ+ D S+D L +
Sbjct: 34 TFCIEEEDHTLGNALRWMIMKNPKVEFCGYSMPHPSEYKINLRIQMYDNASSLDALALAL 93
Query: 168 KELESACDRITETFNDAMQ 186
K+L+ I E +N +++
Sbjct: 94 KQLDDLAGAIEEEYNASLE 112
>gi|400599076|gb|EJP66780.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Beauveria
bassiana ARSEF 2860]
Length = 156
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F +EGHT G+ + +I+ P+V+F Y++PHP++ ++ IRIQ +G +ID LKKG+
Sbjct: 69 SFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNIRIQTYEG-TAIDALKKGL 127
Query: 168 KELESACDRITETF 181
+L+ CD + + F
Sbjct: 128 GDLQQVCDVVADEF 141
>gi|195429497|ref|XP_002062795.1| GK19644 [Drosophila willistoni]
gi|194158880|gb|EDW73781.1| GK19644 [Drosophila willistoni]
Length = 582
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 127/320 (39%), Gaps = 53/320 (16%)
Query: 242 KIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMF 301
+ P+ + +TR L L K L S E Y RD+RG+A L + N + M +
Sbjct: 96 QTPLSELSIETRNQLAGMLNRKKFLHSEEGYARDWRGIAALAKQLGFVSENSDHPMDAVL 155
Query: 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTRLGNSISKN 359
W + + + +I FL IDR+DV DD + +D Y + + I
Sbjct: 156 NSWIERNA---TTADIGHLEQFLGIIDRWDVCDDIQENLLKDTQRYLTKQEQQQAVIKLV 212
Query: 360 GACMDDPS------------------------------------VITIEDVKSLNLGCGL 383
D PS +++ +D K + +G L
Sbjct: 213 NQSPDPPSKIISCIEPNNNIHNSNNNNHNNNNSKVPTSMGQNVMILSEDDQKCVEMGLPL 272
Query: 384 AHYDALLLYDEADFDLAKQF--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCT 439
Y+A +LY EAD + A + N + + + + L G FEH M RC
Sbjct: 273 PRYNACVLYAEADIEHATEIMQNLESGRYNLKLFLRHRDMLMGVPFEHVQLSHFMATRCN 332
Query: 440 CVIVLMSTHFMN---NSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKL 496
+IV+++ F+ N+ L + TQ + + +HT KIIPIL D L +
Sbjct: 333 HLIVVLTEEFLRSPENTYLVNFTQKIQIE--NHT--RKIIPILYKSDLHVPQTLGIYTHI 388
Query: 497 KLNHYASNMEQFWDRLYYSL 516
K + S + FWD+L SL
Sbjct: 389 KYS-GDSTLFNFWDKLARSL 407
>gi|427794155|gb|JAA62529.1| Putative rna polymerase i/iii 16kd polypeptide, partial
[Rhipicephalus pulchellus]
Length = 131
Score = 69.7 bits (169), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
N CRTFV + + HT G+ + +++ PEV F GY++PHP++ ++ +RI+ + G ++
Sbjct: 36 NENEKCRTFVMDDQDHTLGNALRYMIMKNPEVRFCGYAIPHPSERKVHLRIETR-GITAV 94
Query: 161 DILKKGIKELESACDRITETFNDAMQ 186
+ LKKG+++L + + + F + ++
Sbjct: 95 EALKKGLQDLHKMSEHMLKEFEETVE 120
>gi|326476483|gb|EGE00493.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
Length = 147
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + +++ P+V+F GY++PHP++ ++ +RIQ D +L+KG+
Sbjct: 60 SFQFEGEDHTLGNALRYVIMKNPDVEFCGYTIPHPSEAKMNLRIQTYDSTKVFTVLEKGL 119
Query: 168 KELESACDRITETFN 182
+L CD +TE F
Sbjct: 120 SDLMDLCDIVTEKFT 134
>gi|399217051|emb|CCF73738.1| unnamed protein product [Babesia microti strain RI]
Length = 88
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
++ PN TF E E HT G+V+ IL +V FAGY++PHP +Q+ IR+Q G +I
Sbjct: 3 DLSPNL-TFCIENEDHTLGNVVRTILSKKKDVSFAGYTMPHPMQYQVNIRVQTT-GKPAI 60
Query: 161 DILKKGIKELESACDRITETFNDAM 185
+ + + E++ CD+I FN A+
Sbjct: 61 QAMVESLDEMQQVCDQILGEFNRAL 85
>gi|312070093|ref|XP_003137987.1| hypothetical protein LOAG_02401 [Loa loa]
gi|307766855|gb|EFO26089.1| hypothetical protein LOAG_02401 [Loa loa]
Length = 113
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
L ++L P+ T + +E HT G+ + HIL +V+F GY+VPHP + +I IR+Q K
Sbjct: 14 LDADSLRSDPSNLTVILYEEDHTIGNSLKHILCKMRDVEFCGYNVPHPLEDKILIRLQTK 73
Query: 155 DGYDSIDILKKGIKELESACDRITETFNDA 184
G + D+L KG +ELE I + F+ +
Sbjct: 74 RGVPAADVLMKGFEELECIFGSIRQKFDSS 103
>gi|302916795|ref|XP_003052208.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733147|gb|EEU46495.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 69.3 bits (168), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F YS+PHP++ ++ IRIQ G ++D LKKG+
Sbjct: 60 SFEFVDEGHTLGNALRYIVMKNPDVEFCAYSIPHPSEPKMNIRIQTYSG-TAVDALKKGL 118
Query: 168 KELESACDRITETF 181
+L+ CD + + F
Sbjct: 119 TDLQDVCDVVADEF 132
>gi|302815190|ref|XP_002989277.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
gi|300143020|gb|EFJ09715.1| hypothetical protein SELMODRAFT_160051 [Selaginella moellendorffii]
Length = 101
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
+V+P TF E HTFG+ I ++L P V F GYSVPHP+D ++ +R+Q G +
Sbjct: 8 DVEPESSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTT-GESAK 66
Query: 161 DILKKGIKELESACDRITETFNDAM 185
+ K +++L CD + F+D++
Sbjct: 67 SVFKDALRDLVLICDHVCSAFDDSV 91
>gi|384500104|gb|EIE90595.1| hypothetical protein RO3G_15306 [Rhizopus delemar RA 99-880]
Length = 156
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P TF F+ E HT G+ + H++ +VDF GYS+PHP++ ++ IRIQ D SID L
Sbjct: 63 PTALTFCFKNEDHTLGNSLRHVINKNRDVDFCGYSIPHPSEAKMNIRIQTTDKTTSIDAL 122
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
K G++ L + T+ + + K
Sbjct: 123 KTGLQNLYDMVAHVRSTYAEDLAKK 147
>gi|410076614|ref|XP_003955889.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
gi|372462472|emb|CCF56754.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
Length = 131
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ ++D LKKG+
Sbjct: 51 SFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIRIQTYGEITAVDALKKGL 110
Query: 168 KELESACDRITETF 181
+L CD + ETF
Sbjct: 111 ADLMDLCDVVEETF 124
>gi|300175414|emb|CBK20725.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ I I+ V+F GYSVPHP + ++ +R+Q G ++ + L KG
Sbjct: 22 RTFVFYNEGHTLGNPIRTIMMQQEGVEFCGYSVPHPVEAKMHLRVQTT-GENATEALIKG 80
Query: 167 IKELESACDRITETFNDAM 185
++ E CD I + + A+
Sbjct: 81 LRTFEHICDVIGDRYEKAL 99
>gi|46125119|ref|XP_387113.1| hypothetical protein FG06937.1 [Gibberella zeae PH-1]
Length = 146
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F YS+PHP++ ++ IRIQ G ++D LKKG+
Sbjct: 59 SFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSG-TAVDALKKGL 117
Query: 168 KELESACDRITETF 181
+++ CD + + F
Sbjct: 118 VDIQEVCDVVADEF 131
>gi|301615272|ref|XP_002937095.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Xenopus (Silurana) tropicalis]
Length = 114
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 52/82 (63%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ P+++F GYS+ HP++ +I RIQ ++G +++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL C + TF +++
Sbjct: 82 RGLTELVDVCQHVLNTFEASIK 103
>gi|310789432|gb|EFQ24965.1| hypothetical protein GLRG_00109 [Glomerella graminicola M1.001]
Length = 141
Score = 69.3 bits (168), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ IRIQ DG ++ L+KG+
Sbjct: 59 SFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDG-TAVSALQKGL 117
Query: 168 KELESACDRITETF 181
K+L++ D + E F
Sbjct: 118 KDLQALSDTVAEEF 131
>gi|378730189|gb|EHY56648.1| DNA-directed RNA polymerase III subunit C19 [Exophiala dermatitidis
NIH/UT8656]
Length = 129
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS--IDILKK 165
+F EKE HT G+ + + + P+V+F GY++PHP++ ++ +RIQ + + +D L+K
Sbjct: 42 SFQIEKEDHTLGNALRYFVTKNPDVEFCGYTIPHPSETKMHLRIQTWEDTKTTAVDALRK 101
Query: 166 GIKELESACDRITETFNDA 184
G++++ ACD ++E F +A
Sbjct: 102 GLEDMMEACDVVSEKFTEA 120
>gi|342865951|gb|EGU71952.1| hypothetical protein FOXB_17513 [Fusarium oxysporum Fo5176]
Length = 147
Score = 68.9 bits (167), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F YS+PHP++ ++ IRIQ G ++D LKKG+
Sbjct: 60 SFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYSG-TAVDALKKGL 118
Query: 168 KELESACDRITETF 181
+++ CD + + F
Sbjct: 119 VDIQEVCDVVADEF 132
>gi|118089544|ref|XP_426271.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gallus gallus]
Length = 114
Score = 68.9 bits (167), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ P+V+F GY + HP++ +I RIQ + +++ +
Sbjct: 22 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEPFR 81
Query: 165 KGIKELESACDRITETFNDAMQ 186
KG+ +L C + +TF +M+
Sbjct: 82 KGLNDLMGVCQHVLDTFEKSMR 103
>gi|238231741|ref|NP_001154057.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
Length = 115
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 49/80 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ +VDF GYS+ HP++ +I RIQ + G +++ L++
Sbjct: 24 CVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLRR 83
Query: 166 GIKELESACDRITETFNDAM 185
G+ EL C + TF ++
Sbjct: 84 GLNELSDVCQHVLNTFQRSV 103
>gi|70949116|ref|XP_743999.1| RNA polymerase small subunit [Plasmodium chabaudi chabaudi]
gi|56523760|emb|CAH77311.1| RNA polymerase small subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 96
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL ++FAGY+VPHP +I +RIQ G +I+ILK +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTT-GEPAINILKDSL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + C + + FNDA++
Sbjct: 76 DDLSNICTIMLDKFNDALE 94
>gi|391334302|ref|XP_003741544.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Metaseiulus occidentalis]
Length = 104
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
N C TF+ E E HT G+ + ++ P V F GY++PHP++ I +RIQ+ +G +I
Sbjct: 10 NEDETCMTFLLENEDHTLGNALRCMIMKNPAVQFCGYAIPHPSERTIHVRIQMING-SAI 68
Query: 161 DILKKGIKELESACDRITETFNDAM 185
D L+KG ++L + I TF D +
Sbjct: 69 DALEKGFQDLRDMMEHIHATFEDTI 93
>gi|444518031|gb|ELV11918.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Tupaia
chinensis]
Length = 133
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F ++Q
Sbjct: 98 RGLNELMNVCQHVLDKFEASIQ 119
>gi|328768812|gb|EGF78857.1| hypothetical protein BATDEDRAFT_12522 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +I+ P V F GYSVPHP+++QI +RIQ ++D L KG+
Sbjct: 6 TFCISNEDHTLGNALRYIIMKNPAVSFCGYSVPHPSEYQINLRIQTDGSITAVDALHKGL 65
Query: 168 KELESACDRITETFNDAMQ 186
+L + E+F D ++
Sbjct: 66 DDLVDMTTHVKESFKDKVK 84
>gi|213512884|ref|NP_001134696.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|209735308|gb|ACI68523.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|303657411|gb|ADM15874.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
Length = 115
Score = 68.6 bits (166), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ +VDF GYS+ HP++ +I RIQ + G +++ L++
Sbjct: 24 CVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLRR 83
Query: 166 GIKELESACDRITETF 181
G+ EL C + TF
Sbjct: 84 GLNELTDVCQHVLNTF 99
>gi|268573450|ref|XP_002641702.1| Hypothetical protein CBG10036 [Caenorhabditis briggsae]
gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
Length = 145
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ T + +E HT G+ I HIL EV+F GY+VPHP + +I R+Q KDG +++++L
Sbjct: 59 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVL 118
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K + +E I F A +
Sbjct: 119 VKAFESVEQVFSTIRGKFEAAYE 141
>gi|254578786|ref|XP_002495379.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
gi|238938269|emb|CAR26446.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
Length = 130
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F +E HT G+ + +++ P+V+F GYS+PHP++ + IR+Q ++D+L K
Sbjct: 48 CASFQIAEEDHTLGNALRYMIMKNPDVEFCGYSIPHPSENLLNIRVQTYGNVTAVDVLHK 107
Query: 166 GIKELESACDRITETF 181
G+++L CD + + F
Sbjct: 108 GLQDLMDLCDAVEDKF 123
>gi|302308422|ref|NP_985330.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|299790625|gb|AAS53154.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|374108558|gb|AEY97464.1| FAFL220Cp [Ashbya gossypii FDAG1]
Length = 135
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F E HT G+ + +I+ PEV+F GYS+PHP++ + IRIQ ++D L K
Sbjct: 53 CASFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRIQTYGKVTAVDALHK 112
Query: 166 GIKELESACDRITETF 181
G+++L CD + + F
Sbjct: 113 GLQDLMDMCDVVEDKF 128
>gi|357622568|gb|EHJ73995.1| putative Myeloid differentiation primary response protein MyD88
[Danaus plexippus]
Length = 389
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 30/294 (10%)
Query: 239 DYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENY-----QRDYRGLADLMDI--KAPPNP 291
D +P+ A+ ++R +L+ +L + K+++ + RD+RGLA L++I +A +
Sbjct: 4 DLRAVPLSALSCESRNLLSSRL-NAKKIVPVVGHDQISRHRDWRGLASLINISSEAAASI 62
Query: 292 NC---EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYE 348
C ED K+ W + + + FL+ +DRFDV DD + ++ L
Sbjct: 63 RCNDREDRTDKVLNIWISRND---GTATLGRLMDFLQILDRFDVSDDILELARDNKLIGN 119
Query: 349 NTRLG--NSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQ 406
+ ++ +I +GA D IT +D L Y A +L+ D D + +
Sbjct: 120 HNQIACNPAIVLDGA---DDDFITNDD----RLYGVPQRYHAYVLFAREDRDFVDELLRR 172
Query: 407 LNKMGFTVCDKDNSFLTGQ---FEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQYAE 463
+ + GF +C +D+ + G FE + + + +RC ++++ S F+ + + A+
Sbjct: 173 MRQAGFKLCTEDD-LIAGHATPFEPVSRL-IAERCRNIVLVYSPDFLQSPAIAFYMNLAQ 230
Query: 464 AKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLK 517
A I KI+P++ + L Y L+ ++ FW+RL L+
Sbjct: 231 ADAISKK-QLKIVPVMYRECSLP-RHLAYYTNLRYAPHSRVPYDFWERLSQRLR 282
>gi|254572994|ref|XP_002493606.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033405|emb|CAY71427.1| hypothetical protein PAS_chr4_0925 [Komagataella pastoris GS115]
gi|328354564|emb|CCA40961.1| DNA-directed RNA polymerase III subunit C19 [Komagataella pastoris
CBS 7435]
Length = 136
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 94 ELRDNTLNVKPNCR------TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQI 147
E++ N + + P +F E HT G+ + +I+ PEV++ GYS+PHP++ ++
Sbjct: 29 EVQSNKITLLPGASEDGTAASFQILDEDHTLGNSLRYIIIKNPEVEYCGYSIPHPSEAKL 88
Query: 148 FIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
IRIQ G +++ L+KG+ +L CD + + F+D +
Sbjct: 89 NIRIQTYGGMTAVEALRKGLDDLVDICDHVEKKFSDVI 126
>gi|223646456|gb|ACN09986.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|223672303|gb|ACN12333.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
Length = 102
Score = 68.2 bits (165), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ +VDF GYS+ HP++ +I RIQ + G +++ L++
Sbjct: 11 CVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGVPAVEPLRR 70
Query: 166 GIKELESACDRITETF 181
G+ EL C + TF
Sbjct: 71 GLNELTDVCQHVLNTF 86
>gi|406864812|gb|EKD17855.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 142
Score = 67.8 bits (164), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+KE HT G+ + +I+ P V+F GYS+PHP++ + IRIQ +G ++ L KG
Sbjct: 57 SFEFKKEDHTLGNSLRYIIMKNPNVEFCGYSIPHPSEELMNIRIQTYEGTTAVAALDKGF 116
Query: 168 KELESACDRITETFNDAMQ 186
++L CD + F A +
Sbjct: 117 QDLMDLCDEVALKFMQARE 135
>gi|308502351|ref|XP_003113360.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
gi|308265661|gb|EFP09614.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
Length = 139
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ T + +E HT G+ I HIL EV+F GY+VPHP + +I R+Q KDG +++++L
Sbjct: 53 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVL 112
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K + +E I F ++ +
Sbjct: 113 VKAFESVEQIFSTIRGKFEESYE 135
>gi|298706157|emb|CBJ49085.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 111
Score = 67.4 bits (163), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF+F E HT G+ + H+L EVDF GYSVPHP++ ++ +R+Q G ++++LK+G+
Sbjct: 27 TFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALELLKEGL 85
Query: 168 KELESACDRITE 179
++L C+ + E
Sbjct: 86 RDLRDLCNILEE 97
>gi|290561711|gb|ADD38255.1| DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus
salmonis]
Length = 117
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ H L P V F GY PHP + +I +RIQ Y +D L
Sbjct: 28 PNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQTTSDYTPLDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKV 189
I +L S E+F DA++ K
Sbjct: 88 MNAITDLISELSLFEESFKDAVREKA 113
>gi|156835838|ref|XP_001642180.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112621|gb|EDO14322.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 128
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F E HT G+ + +I+ PEV+F GYS+PHP++ + +RIQ +++ L+K
Sbjct: 46 CASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNLRIQTYGSTTAVEALQK 105
Query: 166 GIKELESACDRITETF 181
G+ +L CD + E F
Sbjct: 106 GLGDLMDMCDVVEEKF 121
>gi|149034849|gb|EDL89569.1| rCG42593, isoform CRA_b [Rattus norvegicus]
Length = 133
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +I+ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 39 CVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQK 98
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + F +++
Sbjct: 99 GLNELLNVCQHVLVKFEASVK 119
>gi|51468043|ref|NP_001003888.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Danio rerio]
gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|49619017|gb|AAT68093.1| RNA polymerase I polypeptide D [Danio rerio]
gi|133777915|gb|AAI15139.1| Zgc:136449 protein [Danio rerio]
Length = 112
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
C TFV +E HT G+ + +++ +V+F GYS+ HP++ +I RIQ +DG + + L+
Sbjct: 21 GCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLR 80
Query: 165 KGIKELESACDRITETFNDAMQ 186
G+ L C + +TF M+
Sbjct: 81 NGLNNLTDVCKHVLQTFEARMK 102
>gi|6677791|ref|NP_033113.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1 [Mus
musculus]
gi|11387094|sp|P97304.1|RPAC2_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16
gi|1778684|dbj|BAA13139.1| RPA16 [Mus musculus]
gi|12833069|dbj|BAB22376.1| unnamed protein product [Mus musculus]
gi|148673878|gb|EDL05825.1| RNA polymerase 1-3, isoform CRA_a [Mus musculus]
Length = 133
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +I+ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 39 CVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQK 98
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + F +++
Sbjct: 99 GLNELLNVCQHVLVKFEASIK 119
>gi|410913427|ref|XP_003970190.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Takifugu rubripes]
Length = 122
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV E HT G+ + +++ +V+F GY++ HP++ +I RIQ + G + ++L+K
Sbjct: 23 CVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRGGVPAAEVLRK 82
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ +L C + TF +++
Sbjct: 83 GLSDLHEVCQHVLNTFEVSLR 103
>gi|383872945|ref|NP_001244388.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|355700890|gb|EHH28911.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|380787579|gb|AFE65665.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|383413361|gb|AFH29894.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|384942556|gb|AFI34883.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
Length = 133
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL S C + + F +++
Sbjct: 98 RGLNELMSVCQHVLDKFEASIK 119
>gi|320590409|gb|EFX02852.1| DNA-directed RNA polymerase 1 and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 171
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P +F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ IRIQ +G ++ L
Sbjct: 80 PTAASFEFLDEGHTLGNSLRYIIMKNPDVEFCAYTIPHPSEAKMNIRIQTYEG-TALQAL 138
Query: 164 KKGIKELESACDRITETF 181
+KG+ +L+ CD + E +
Sbjct: 139 EKGLHDLQDLCDVVEEKY 156
>gi|380486342|emb|CCF38765.1| hypothetical protein CH063_09777 [Colletotrichum higginsianum]
Length = 140
Score = 67.0 bits (162), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + I+ P+V+F Y++PHP++ ++ IRIQ DG ++ L+KG+
Sbjct: 58 SFEFIDEGHTLGNALRFIIMKNPDVEFCAYAIPHPSEAKMNIRIQTYDG-TAVAALQKGL 116
Query: 168 KELESACDRITETF 181
K+L++ D + E F
Sbjct: 117 KDLQALSDTVAEEF 130
>gi|403217497|emb|CCK71991.1| hypothetical protein KNAG_0I02060 [Kazachstania naganishii CBS
8797]
Length = 134
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F E HT G+ + +++ PEV+F GYS+PHP++ + +RIQ ++D KK
Sbjct: 52 CASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIPHPSENWLNVRIQTYGKITAVDAFKK 111
Query: 166 GIKELESACDRITETF 181
G+ +L CD + + F
Sbjct: 112 GLGDLMDMCDVVEDVF 127
>gi|281344161|gb|EFB19745.1| hypothetical protein PANDA_016989 [Ailuropoda melanoleuca]
Length = 125
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 30 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 89
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 90 RGLNELMNVCQHVLDKFEASIK 111
>gi|291410364|ref|XP_002721466.1| PREDICTED: polymerase (RNA) I polypeptide D [Oryctolagus cuniculus]
Length = 133
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>gi|363753556|ref|XP_003646994.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890630|gb|AET40177.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
Length = 127
Score = 66.6 bits (161), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F E HT G+ + +I+ PEV+F GYS+PHP++ + +RIQ +++ L K
Sbjct: 45 CASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRIQTYGKMTAVEALHK 104
Query: 166 GIKELESACDRITETFNDAMQ 186
G+K+L CD + + F ++
Sbjct: 105 GLKDLMDLCDVVEDKFTQRIR 125
>gi|345790282|ref|XP_003433343.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Canis lupus familiaris]
Length = 133
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>gi|432117377|gb|ELK37721.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Myotis
davidii]
Length = 123
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 28 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 87
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 88 RGLNELLNVCQHVLDKFEASIK 109
>gi|354468533|ref|XP_003496707.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cricetulus griseus]
Length = 133
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQK 98
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + + F +++
Sbjct: 99 GLNELMNVCQHVLDKFEASIK 119
>gi|347829199|emb|CCD44896.1| hypothetical protein [Botryotinia fuckeliana]
Length = 148
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F+KE HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ D + D L+KG+
Sbjct: 63 SFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQTYDN-SAEDALRKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
+L CD + + F A +
Sbjct: 122 DDLIDLCDVVADKFTAARE 140
>gi|320580545|gb|EFW94767.1| DNA-directed RNA polymerase subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 125
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +++ PEV+F GYS+PHPA+ ++ IRIQ G +++ L KG+
Sbjct: 38 SFQISDEDHTLGNALRYMIMKNPEVEFCGYSIPHPAESKMNIRIQTYGGMSAVEALHKGL 97
Query: 168 KELESACDRITETFNDAMQCK 188
+L C + + F + + +
Sbjct: 98 DDLVDLCTHVEDVFGEKISSR 118
>gi|452841596|gb|EME43533.1| hypothetical protein DOTSEDRAFT_63729 [Dothistroma septosporum
NZE10]
Length = 133
Score = 66.6 bits (161), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE E HT G+ + ++L P+V+F GYS+PHP++ + IRIQ DG +L++ +
Sbjct: 42 SFSFENEDHTLGNALRYMLTKDPDVEFCGYSIPHPSEPFMNIRIQTWDGVHVNVVLRRAL 101
Query: 168 KELESACDRITETF 181
+ L CD + E F
Sbjct: 102 ENLADLCDAVEEKF 115
>gi|344237268|gb|EGV93371.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Cricetulus
griseus]
Length = 116
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 22 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQK 81
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + + F +++
Sbjct: 82 GLNELMNVCQHVLDKFEASIK 102
>gi|340370096|ref|XP_003383582.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Amphimedon queenslandica]
Length = 107
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
C TFV + E HT G+ + IL P+V F GYS PHP++ +I +RIQ G + ++L+
Sbjct: 20 TCMTFVLQDEDHTLGNALRWILIKNPDVSFCGYSTPHPSERKINLRIQTT-GISATEVLR 78
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+++L I +T+ ++Q
Sbjct: 79 RGLEDLRELFQHIHKTYEASVQ 100
>gi|348672539|gb|EGZ12359.1| hypothetical protein PHYSODRAFT_361522 [Phytophthora sojae]
Length = 107
Score = 66.2 bits (160), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 51/80 (63%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+T+VF +E HT G+ + ++L P+VDF GY++PHP++ ++ IR+Q + G + + L+ G
Sbjct: 19 KTYVFHEEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEALRSG 78
Query: 167 IKELESACDRITETFNDAMQ 186
+ +L +I + + ++
Sbjct: 79 LTDLRKVSTQIGDAYRKELK 98
>gi|431920979|gb|ELK18748.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Pteropus
alecto]
Length = 123
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +I+ +
Sbjct: 28 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGVLPAIEPFQ 87
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 88 RGLNELMNVCQHVLDKFEASIK 109
>gi|301783617|ref|XP_002927225.1| PREDICTED: hypothetical protein LOC100471798 [Ailuropoda
melanoleuca]
Length = 324
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 229 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 288
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 289 RGLNELMNVCQHVLDKFEASIK 310
>gi|238879719|gb|EEQ43357.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
albicans WO-1]
Length = 133
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 46 SFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQGL 105
Query: 168 KELESACDRITETFNDAMQC 187
L C I + F+DA++
Sbjct: 106 DNLSELCGAIEDKFDDAIKA 125
>gi|68490974|ref|XP_710709.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|68491001|ref|XP_710695.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431930|gb|EAK91447.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431945|gb|EAK91461.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
Length = 131
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 44 SFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQGL 103
Query: 168 KELESACDRITETFNDAMQC 187
L C I + F+DA++
Sbjct: 104 DNLSELCGAIEDKFDDAIKA 123
>gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769 [Aureococcus anophagefferens]
Length = 74
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFVF E HT G+ + H+L + DFAGYSVPHP++ + +R+Q G ++ ++ G+
Sbjct: 1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTT-GRPALAVMDDGL 59
Query: 168 KELESACDRIT 178
+L S CD +T
Sbjct: 60 AQLSSICDSLT 70
>gi|301112645|ref|XP_002998093.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112387|gb|EEY70439.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 107
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 51/80 (63%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+T+VF +E HT G+ + ++L P+VDF GY++PHP++ ++ IR+Q + G + + L+ G
Sbjct: 19 KTYVFHEEDHTLGNAVRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGALADEALRSG 78
Query: 167 IKELESACDRITETFNDAMQ 186
+ +L +I + + ++
Sbjct: 79 LTDLRKVSTQIGDAYRKELK 98
>gi|296417394|ref|XP_002838343.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634271|emb|CAZ82534.1| unnamed protein product [Tuber melanosporum]
Length = 105
Score = 66.2 bits (160), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGY----DSIDIL 163
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ+ Y D L
Sbjct: 11 SFEILGEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEEKMNIRIQIYPEYWEHTKPYDAL 70
Query: 164 KKGIKELESACDRITETFNDA 184
KG+ +L CD IT F +A
Sbjct: 71 MKGLDDLADLCDHITHAFKEA 91
>gi|68071445|ref|XP_677636.1| RNA polymerase small subunit [Plasmodium berghei strain ANKA]
gi|56497829|emb|CAH98380.1| RNA polymerase small subunit, putative [Plasmodium berghei]
Length = 96
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL ++FAGY+VPHP +I +RIQ G +I+ILK +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTT-GKPAINILKDSL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + C + E F +A++
Sbjct: 76 DDLSNICTILLEKFKNALE 94
>gi|338715260|ref|XP_003363239.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC2-like [Equus caballus]
Length = 126
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 31 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 90
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 91 RGLNELMNVCQHVLDKFEASIK 112
>gi|399574164|gb|AFP49301.1| myeloid differentiation factor 88-1 [Litopenaeus vannamei]
Length = 432
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 62/284 (21%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI--------KAPPNPNCED 295
P+ + P ++Q + KL K L+ E RD+RGLA+ + K P +C
Sbjct: 12 PVRILSPASKQYMATKLDSRKILLVNEGIHRDWRGLAEQAGLDVNSICSGKISPTEHCLH 71
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNS 355
L W + L I +LE +DRFDV DD + I D Y+
Sbjct: 72 L-------WGQKGGL------IGQLWTYLEAMDRFDVIDDTLQMIYAD---YDK------ 109
Query: 356 ISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL-NKMGFTV 414
CM L+ FD ++ +L + +
Sbjct: 110 ------CM--------------------TQSGGALMAVPPPFDFVQEMLEKLEGEYNLKL 143
Query: 415 CDKDNSFLTG-QFEHSAFIQ-VMDRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIH 472
C K+ + G QFE + ++ +M+RCT VIV++S F+ +S T +A A +D
Sbjct: 144 CHKNRDLIGGLQFESESIVKLIMERCTRVIVVLSPEFLESSTNTFFTLFAHALSVDQR-R 202
Query: 473 SKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+IP L + +C L + A +W++L SL
Sbjct: 203 RIVIPCLYK-PCVKPAVISFCHSLDY-YRAKGYWNYWEKLRDSL 244
>gi|335296765|ref|XP_003357859.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sus scrofa]
Length = 133
Score = 65.9 bits (159), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLTELMNVCQHVLDKFEASIK 119
>gi|385048154|gb|AFI39838.1| myD88, partial [Daphnia pulex]
Length = 278
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL 379
+ +LE +DR+DV DD I +E D LY + + +K D ++TI D +
Sbjct: 37 LIEYLEKMDRYDVVDDTIALMEND-LYLASRQTNLQETK----QDIXQIVTIGDQEQFXE 91
Query: 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNKM----GFTVCDKDNSFLTG-QFEHSAFIQV 434
L YDA +LY D + NT + K+ G +C KD F+ G FEH ++
Sbjct: 92 DGTLVQYDAFVLYAREDQEFV---NTVVKKIEGEYGMKLCLKDRDFIAGLPFEHQXVTEL 148
Query: 435 M-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYC 493
+ +RC V+ + S +F+N+ + ++EA I+ KI+P + Q C
Sbjct: 149 ISNRCRFVLPIFSPNFLNSEDNKFVVNFSEALGIERGCR-KIVPCV----------YQQC 197
Query: 494 VKLKLNHYASNME--------QFWDRLYYSL 516
K Y + ++ FWD++ SL
Sbjct: 198 DLPKSVRYYTRLDFTRQNPYWDFWDKMKKSL 228
>gi|326924460|ref|XP_003208445.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Meleagris gallopavo]
Length = 134
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ P+V+F GY + HP++ +I RIQ + +++ +
Sbjct: 20 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEPFR 79
Query: 165 KGIKELESACDRITETF 181
KG+ +L C + +TF
Sbjct: 80 KGLNDLMGVCQHVLDTF 96
>gi|7705740|ref|NP_057056.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Homo sapiens]
gi|410047658|ref|XP_003952423.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Pan troglodytes]
gi|426375009|ref|XP_004054344.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gorilla gorilla gorilla]
gi|441624152|ref|XP_004088972.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Nomascus leucogenys]
gi|11387119|sp|Q9Y2S0.1|RPAC2_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16; AltName: Full=RPC16; AltName:
Full=hRPA19
gi|4689136|gb|AAD27777.1|AF077044_1 RNA polymerase I 16 kDa subunit [Homo sapiens]
gi|12654143|gb|AAH00889.1| Polymerase (RNA) I polypeptide D, 16kDa [Homo sapiens]
gi|119628820|gb|EAX08415.1| hCG2020048, isoform CRA_a [Homo sapiens]
gi|208968663|dbj|BAG74170.1| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]
gi|410217740|gb|JAA06089.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410304014|gb|JAA30607.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410334477|gb|JAA36185.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
Length = 133
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>gi|430811896|emb|CCJ30651.1| unnamed protein product [Pneumocystis jirovecii]
Length = 124
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF KE HT + + +I+ P+V+F GYS+PHP++ + RIQ ++D+ KG+
Sbjct: 32 TFQIIKEDHTLANALRYIVMKNPDVEFCGYSIPHPSEPTLNFRIQTFRNISAVDVFIKGL 91
Query: 168 KELESACDRITETF 181
+L + CD + +TF
Sbjct: 92 DDLVALCDHVADTF 105
>gi|426236489|ref|XP_004012200.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Ovis aries]
Length = 123
Score = 65.9 bits (159), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 28 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 87
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 88 RGLTELMNVCQHVLDKFEASIK 109
>gi|395850165|ref|XP_003797668.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Otolemur garnettii]
Length = 133
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 50/82 (60%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHDEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>gi|170595751|ref|XP_001902505.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
gi|158589782|gb|EDP28642.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
Length = 113
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%)
Query: 86 LENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADF 145
L++ V L ++ P+ T + +E HT G+ + H+L +V+F GY+VPHP +
Sbjct: 5 LDSERKVEILDVDSFRSDPSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLED 64
Query: 146 QIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
+I IR+Q K G + +L KG +ELE I + F+ +
Sbjct: 65 KILIRLQTKRGVSAASMLMKGFEELECIFASIRQKFDSS 103
>gi|225716362|gb|ACO14027.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Esox lucius]
Length = 114
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ +VDF GYS+ HP++ +I RIQ + +++ L++
Sbjct: 24 CVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGAVPAVEPLRR 83
Query: 166 GIKELESACDRITETF 181
G+ EL C + TF
Sbjct: 84 GLTELTDLCQHVLNTF 99
>gi|388854627|emb|CCF51784.1| related to DNA-directed RNA polymerase 13.3K chain [Ustilago
hordei]
Length = 149
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF F KE HT G+++ H + + P V F GY VPHP + ++F++IQ D L
Sbjct: 29 PNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDAL 88
Query: 164 KKGIKEL 170
K+G ++L
Sbjct: 89 KQGCQKL 95
>gi|429855586|gb|ELA30535.1| DNA-directed RNA polymerase i and iii 14 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 138
Score = 65.5 bits (158), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F F EGHT G+ + +I+ P+V+F Y++PHP++ ++ +RIQ DG ++ L++G+
Sbjct: 56 SFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNLRIQTYDG-TAVAALQQGL 114
Query: 168 KELESACDRITETF 181
K+L++ D + E F
Sbjct: 115 KDLQALSDTVAEEF 128
>gi|323331945|gb|EGA73357.1| Rpc19p [Saccharomyces cerevisiae AWRI796]
Length = 111
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 31 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 90
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 91 KDLMDLCDVVESKFTEKIK 109
>gi|388580060|gb|EIM20378.1| RBP11-like subunits of RNA polymerase [Wallemia sebi CBS 633.66]
Length = 135
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +IL V+F GYS+PHP++ ++ +RIQ+ D +ID L KG+
Sbjct: 34 TFCLFNEDHTIGNALRYILMKNGNVEFCGYSIPHPSEPKVHLRIQMYDNLSAIDALYKGL 93
Query: 168 KELESACDRITETFNDAMQCK 188
+LES + I ++ ++ +
Sbjct: 94 DDLESMFNEIEASYKTNLETE 114
>gi|296203610|ref|XP_002748958.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Callithrix jacchus]
Length = 133
Score = 65.5 bits (158), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>gi|405118365|gb|AFR93139.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii
H99]
Length = 155
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + I+ PEV+F GY+ PHP++ +I +RIQ+ + ++D L++ +
Sbjct: 41 TFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLRRAL 100
Query: 168 KELESACDRITETFNDAMQ 186
L + + +T++ ++Q
Sbjct: 101 SNLRDLLNAVNDTYSSSLQ 119
>gi|449281716|gb|EMC88730.1| DNA-directed RNA polymerases I and III subunit RPAC2, partial
[Columba livia]
Length = 90
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ P+V+F GY + HP++ +I RIQ + +++ +
Sbjct: 10 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGTLPAVEPFR 69
Query: 165 KGIKELESACDRITETF 181
KG+ +L C + TF
Sbjct: 70 KGLNDLMGVCQHVLNTF 86
>gi|323307474|gb|EGA60747.1| Rpc19p [Saccharomyces cerevisiae FostersO]
Length = 111
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 31 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 90
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 91 KDLMDLCDVVESKFTEKIK 109
>gi|348536761|ref|XP_003455864.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oreochromis niloticus]
Length = 114
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV E HT G+ + +++ +V+F GY++ HP++ +I RIQ + G + + L++
Sbjct: 23 CVTFVLHDEDHTLGNSLRYMIMKNADVEFCGYTITHPSESKINFRIQTRGGIPAAEPLRR 82
Query: 166 GIKELESACDRITETF 181
G+ EL C + TF
Sbjct: 83 GLNELSDVCQHVLNTF 98
>gi|71011575|ref|XP_758471.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
gi|46097891|gb|EAK83124.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
Length = 145
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF F KE HT G+++ H + + P V F GY VPHP + ++F++IQ D L
Sbjct: 29 PNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSLTPTDAL 88
Query: 164 KKGIKEL 170
K+G ++L
Sbjct: 89 KQGSQKL 95
>gi|323303408|gb|EGA57204.1| Rpc19p [Saccharomyces cerevisiae FostersB]
Length = 111
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 31 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 90
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 91 KDLMDLCDVVESKFTEKIK 109
>gi|343427525|emb|CBQ71052.1| related to DNA-directed RNA polymerase 13.3K chain [Sporisorium
reilianum SRZ2]
Length = 147
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF F KE HT G+++ H + + P V F GY VPHP + ++F++IQ D L
Sbjct: 29 PNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDAL 88
Query: 164 KKGIKEL 170
K+G ++L
Sbjct: 89 KQGSQKL 95
>gi|365758721|gb|EHN00549.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 156
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 76 SFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKGL 135
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 136 KDLMDLCDVVEAKFTEKIK 154
>gi|401839526|gb|EJT42714.1| RPC19-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 142
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 62 SFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 122 KDLMDLCDVVEAKFTEKIK 140
>gi|295668907|ref|XP_002795002.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285695|gb|EEH41261.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 12/89 (13%)
Query: 108 TFVFEKEGHTFGSVITHILQS------------YPEVDFAGYSVPHPADFQIFIRIQVKD 155
+F F++E HT G+ + +++ PEV+F GY++PHP++ ++ +RIQ +
Sbjct: 83 SFQFDREDHTLGNALRYVIMKNPKFLTYSSIIRSPEVEFCGYTMPHPSEAKMNLRIQTYE 142
Query: 156 GYDSIDILKKGIKELESACDRITETFNDA 184
+I +L+KG +L CD +TETF +A
Sbjct: 143 TTTAIAVLEKGFDDLMDLCDVVTETFTEA 171
>gi|432858786|ref|XP_004068938.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oryzias latipes]
Length = 141
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 65 IPTSTSSVNTSLCINYMESKQLENSSPVWE---LRDNTLNVK-------PNCRTFVFEKE 114
+P+ +S +C ES+ N+ P +E L + + PN F KE
Sbjct: 3 VPSGSSISRLPVCSQRTESRGKMNAPPAFESFLLFEGEKKISISKDTKVPNACLFTLNKE 62
Query: 115 GHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESAC 174
HT G++I L P+V FAGY VPHP + +I IR+Q Y + I +L S
Sbjct: 63 DHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISEL 122
Query: 175 DRITETFNDAMQCK 188
+ E F A++ K
Sbjct: 123 SLLEERFRVAIKDK 136
>gi|70984198|ref|XP_747617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|66845244|gb|EAL85579.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|159122404|gb|EDP47525.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus A1163]
Length = 161
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 19/96 (19%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ--------------- 152
+F FE EGHT G+ + + + PEV+F GY++PHP++ ++ +RIQ
Sbjct: 52 SFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSEAKMNLRIQTYGMYFCHTLARFDG 111
Query: 153 ----VKDGYDSIDILKKGIKELESACDRITETFNDA 184
+ D +++ L+KG++ L CD +T+ F A
Sbjct: 112 ADRNIADSTTAVEALEKGLEALMDLCDVVTDKFTSA 147
>gi|384248587|gb|EIE22071.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 105
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E E HT + + H+L P V F GYS+PHP++ + +RIQ +++ L++
Sbjct: 12 TFALEDEDHTLANSLRHLLNRNPHVSFVGYSIPHPSEKVVNLRIQTTGEISAVEALRQAC 71
Query: 168 KELESACDRITETFND 183
+ L+ C+ I TF +
Sbjct: 72 QSLKQVCEHIKATFQE 87
>gi|392595387|gb|EIW84710.1| RBP11-like subunits of RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 114
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ T+ E HT G+ + +L P+V+F GYSVPHP++ I +RIQ+ D S+D L
Sbjct: 22 SAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENHINVRIQMYDELSSLDALL 81
Query: 165 KGIKELESACDRITETFNDAM 185
+ + L+ C+ + + + D++
Sbjct: 82 EALSNLDDLCETVEQKYQDSL 102
>gi|410947157|ref|XP_003980319.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Felis catus]
Length = 116
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 21 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 80
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 81 RGLNELMNVCQHVLDKFEASIK 102
>gi|116781365|gb|ABK22069.1| unknown [Picea sitchensis]
gi|116785114|gb|ABK23600.1| unknown [Picea sitchensis]
gi|116790373|gb|ABK25590.1| unknown [Picea sitchensis]
gi|224284720|gb|ACN40091.1| unknown [Picea sitchensis]
Length = 120
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TFV E+E HT G+++ L P V FAGY +PHP ++I +RIQ +
Sbjct: 29 NAATFVIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFNDAM 185
I +L+ D + +F D M
Sbjct: 89 LAIDDLDKELDHLKRSFEDEM 109
>gi|6324215|ref|NP_014286.1| Rpc19p [Saccharomyces cerevisiae S288c]
gi|133371|sp|P28000.1|RPAC2_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 16 kDa polypeptide; AltName: Full=RPA19
gi|172472|gb|AAA34998.1| AC19 RNA polymerase subunit [Saccharomyces cerevisiae]
gi|1183960|emb|CAA93394.1| Subunit of RNA polymerase I and III [Saccharomyces cerevisiae]
gi|1302037|emb|CAA95994.1| RPC19 [Saccharomyces cerevisiae]
gi|45269892|gb|AAS56327.1| YNL113W [Saccharomyces cerevisiae]
gi|151944423|gb|EDN62701.1| AC19 [Saccharomyces cerevisiae YJM789]
gi|190409101|gb|EDV12366.1| RNA polymerases I subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273818|gb|EEU08740.1| Rpc19p [Saccharomyces cerevisiae JAY291]
gi|259149248|emb|CAY82490.1| Rpc19p [Saccharomyces cerevisiae EC1118]
gi|285814540|tpg|DAA10434.1| TPA: Rpc19p [Saccharomyces cerevisiae S288c]
gi|323335952|gb|EGA77230.1| Rpc19p [Saccharomyces cerevisiae Vin13]
gi|323346881|gb|EGA81160.1| Rpc19p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352551|gb|EGA85050.1| Rpc19p [Saccharomyces cerevisiae VL3]
gi|349580826|dbj|GAA25985.1| K7_Rpc19p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763575|gb|EHN05103.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296878|gb|EIW07979.1| Rpc19p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 142
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 62 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 122 KDLMDLCDVVESKFTEKIK 140
>gi|149689200|gb|ABR27969.1| DNA-directed RNA polymerase II 13.3 kda polypeptide [Triatoma
infestans]
Length = 117
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 45/85 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP D + IRIQ + +L
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPKVLFAGYKVPHPLDPKFVIRIQTTNDETPQSVL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
K I +L S E F +A++ K
Sbjct: 88 KNAITDLISELSLFEERFKEAIKDK 112
>gi|389585811|dbj|GAB68541.1| RNA polymerase small subunit [Plasmodium cynomolgi strain B]
Length = 97
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +I+ILK +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTT-GEPAINILKDSL 75
Query: 168 KELESACDRITETFNDAMQ 186
++L + CD + F+ ++
Sbjct: 76 EDLSNICDIMLNKFDSVVK 94
>gi|395324917|gb|EJF57348.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 111
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ E HT G+ + +L P+V+F GYSVPHP++ I +RIQ+ DG S+ L + +
Sbjct: 22 TYQIHDESHTIGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQMYDGLSSLAALLQAL 81
Query: 168 KELESACDRITETF 181
K+L+ C I + +
Sbjct: 82 KDLDDLCVTIDDAY 95
>gi|401623947|gb|EJS42026.1| rpc19p [Saccharomyces arboricola H-6]
Length = 142
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 62 SFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
++L CD + F ++++
Sbjct: 122 QDLMDLCDVVESKFTESIK 140
>gi|241958198|ref|XP_002421818.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
gi|223645163|emb|CAX39762.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
Length = 130
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 43 SFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQGL 102
Query: 168 KELESACDRITETFNDAMQC 187
L C I + F++A++
Sbjct: 103 DNLSELCSAIEDKFDEAVKA 122
>gi|429329665|gb|AFZ81424.1| RNA polymerase small subunit, putative [Babesia equi]
Length = 92
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
PN TF E E HT G+V+ +L +V FAGYSVPHP ++ IRIQ G ++++
Sbjct: 5 SPNI-TFSIENEDHTLGNVLRTLLVERDDVVFAGYSVPHPMQPEMNIRIQTT-GQPAVEV 62
Query: 163 LKKGIKELESACDRITETFNDAM 185
+ + +L CD +T+ F AM
Sbjct: 63 FSQSLGDLVEICDTLTDAFKKAM 85
>gi|296479321|tpg|DAA21436.1| TPA: polymerase (RNA) I polypeptide D-like [Bos taurus]
Length = 133
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L + C + + F +++
Sbjct: 98 RGVTDLMNVCQHVLDKFEASIK 119
>gi|326432315|gb|EGD77885.1| hypothetical protein PTSG_09519 [Salpingoeca sp. ATCC 50818]
Length = 164
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ---VKDGYDSI 160
P TFV E HT G+ + IL P VDF GYS PHP+D I +R+Q V++G + +
Sbjct: 36 PQSATFVIANEDHTLGNSLRWILNRDPRVDFCGYSQPHPSDKLIKLRVQPKPVEEGEEPV 95
Query: 161 D---ILKKGIKELESACDRITET 180
D +L+ +K L CD ++ET
Sbjct: 96 DATEVLRDALKNLMQMCDHMSET 118
>gi|321252347|ref|XP_003192374.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
gi|317458842|gb|ADV20587.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
Length = 155
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + I+ PEV+F GY+ PHP++ +I +RIQ+ + ++D L++ +
Sbjct: 41 TFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLRRAL 100
Query: 168 KELESACDRITETFNDAMQ 186
L + + ++++ ++Q
Sbjct: 101 SNLRDLLNAVNDSYSSSLQ 119
>gi|367015282|ref|XP_003682140.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
gi|359749802|emb|CCE92929.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
Length = 129
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F +E HT G+ + +++ +V+F GYS+PHP++ + +RIQ ++D+L+K
Sbjct: 47 CASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSIPHPSENLLNLRIQTYGATTAVDVLQK 106
Query: 166 GIKELESACDRITETF 181
G+ +L CD + + F
Sbjct: 107 GLTDLMDLCDAVEDRF 122
>gi|385301731|gb|EIF45900.1| putative rna polymerase i and iii shared subunit rpc19 [Dekkera
bruxellensis AWRI1499]
Length = 144
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ ++D L KG+ +L
Sbjct: 63 EDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKMNIRIQTYGEQTAVDALHKGLDDLSKL 122
Query: 174 CDRITETFNDAMQCK 188
C I +TF + + K
Sbjct: 123 CSFIEDTFMEKVNAK 137
>gi|294654812|ref|XP_456893.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
gi|199429167|emb|CAG84870.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
Length = 129
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +
Sbjct: 40 AASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 99
Query: 166 GIKELESACDRITETFNDAMQC 187
G+ L C I E F++ ++
Sbjct: 100 GLDNLSELCSTIEEKFSEKIEA 121
>gi|442747853|gb|JAA66086.1| Putative rna polymerase i/iii 16kd polypeptide [Ixodes ricinus]
Length = 110
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
CRT++ + + HT G+ + +++ P+V F GY++PHP++ ++ +RI+ +D + + LKK
Sbjct: 18 CRTYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRD-ITADEALKK 76
Query: 166 GIKELESACDRITETF 181
G+++L + I + F
Sbjct: 77 GLQDLHQMSEHILKVF 92
>gi|156102216|ref|XP_001616801.1| RNA polymerase small subunit [Plasmodium vivax Sal-1]
gi|148805675|gb|EDL47074.1| RNA polymerase small subunit, putative [Plasmodium vivax]
Length = 97
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +I+ILK +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTT-GEPAINILKDSL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + F+ ++
Sbjct: 76 DDLSNICDIMLNKFDSVVK 94
>gi|115497472|ref|NP_001069612.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos taurus]
gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=DNA-directed RNA polymerase I subunit D
gi|92096988|gb|AAI14906.1| Polymerase (RNA) I polypeptide D, 16kDa [Bos taurus]
gi|296481744|tpg|DAA23859.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC2 [Bos
taurus]
gi|440900647|gb|ELR51729.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos grunniens
mutus]
Length = 133
Score = 63.9 bits (154), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L + C + + F +++
Sbjct: 98 RGLTDLMNVCQHVLDKFEASIK 119
>gi|241121691|ref|XP_002403305.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
gi|215493414|gb|EEC03055.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes scapularis]
Length = 109
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
CRT++ + + HT G+ + +++ P+V F GY++PHP++ ++ +RI+ +D + + LKK
Sbjct: 17 CRTYLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETRD-ITADEALKK 75
Query: 166 GIKELESACDRITETF 181
G+++L + I + F
Sbjct: 76 GLQDLHQMSEHILKVF 91
>gi|392576372|gb|EIW69503.1| hypothetical protein TREMEDRAFT_71650 [Tremella mesenterica DSM
1558]
Length = 154
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +L P+V+F GYS PHP+D +I +R+Q+ D +++ L+K +
Sbjct: 46 TFCLWNEDHTLGNALRWMLMKDPDVEFCGYSAPHPSDPKIHLRVQMYDNLSAVECLRKAL 105
Query: 168 KELESACDRITETFNDAMQ 186
K L I ++ ++Q
Sbjct: 106 KNLRELFQSIDSAYSKSLQ 124
>gi|356573936|ref|XP_003555110.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Glycine max]
Length = 106
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + + L P V F GYS+PHP+D ++ IR+Q G + ++LK G
Sbjct: 13 TFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT-GDPAREVLKDGC 71
Query: 168 KELESACDRITETFNDAM 185
++L C + TF++AM
Sbjct: 72 QDLMLMCQHVRSTFDNAM 89
>gi|58262798|ref|XP_568809.1| DNA-directed RNA polymerase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108506|ref|XP_777204.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259889|gb|EAL22557.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223459|gb|AAW41502.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 155
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + I+ PEV+F GY+ PHP++ +I +RIQ+ + ++D L++ +
Sbjct: 41 TFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLRRAL 100
Query: 168 KELESACDRITETFNDAMQ 186
L + + +++ ++Q
Sbjct: 101 SNLRDLLNAVNDSYTSSLQ 119
>gi|401406776|ref|XP_003882837.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
gi|325117253|emb|CBZ52805.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related [Neospora
caninum Liverpool]
Length = 129
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ I IL P V+FAGYSVPHP ++ IR+Q G ++ +L++
Sbjct: 38 TFTLTGEDHTLGNAIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTT-GESAMQLLRESF 96
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + +++A++
Sbjct: 97 DDLANICDHLDTLYDEALE 115
>gi|444715581|gb|ELW56446.1| DNA-directed RNA polymerase II subunit RPB11-a [Tupaia chinensis]
Length = 131
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 49/100 (49%)
Query: 89 SSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIF 148
+SP+ + N PN F KE HT G++I L P+V FAGY VPHP + +I
Sbjct: 27 TSPLPRITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKII 86
Query: 149 IRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
IR+Q Y + I +L S + E F A++ K
Sbjct: 87 IRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDK 126
>gi|344304121|gb|EGW34370.1| hypothetical protein SPAPADRAFT_59793 [Spathaspora passalidarum
NRRL Y-27907]
Length = 127
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 40 SFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQGL 99
Query: 168 KELESACDRITETFNDAMQ 186
L C I E F++ ++
Sbjct: 100 DNLSELCTVIEEKFSEKIE 118
>gi|221060390|ref|XP_002260840.1| RNA polymerase small subunit [Plasmodium knowlesi strain H]
gi|193810914|emb|CAQ42812.1| RNA polymerase small subunit, putative [Plasmodium knowlesi strain
H]
Length = 94
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +++ILK +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTT-GEPAVNILKDAL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + F+ A++
Sbjct: 76 DDLSNICDIMLNKFDSAVK 94
>gi|349804759|gb|AEQ17852.1| putative polymerase ii (dna directed) polypeptide [Hymenochirus
curtipes]
Length = 99
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 10 PNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 69
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S I E DA++ K
Sbjct: 70 TNAITDLLSELSLIEERLKDAIKDK 94
>gi|169612495|ref|XP_001799665.1| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
gi|160702522|gb|EAT83562.2| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
Length = 139
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 108 TFVFEKEGHTFGSVITHILQS--------YPEVDFAGYSVPHPADFQIFIRIQVKDGYDS 159
+F + E HT G+ + +I+ P+V+F GYS+PHP++ ++ +RIQ DG
Sbjct: 45 SFQIDGEDHTLGNALRYIIHKNEVANTIYSPDVEFCGYSIPHPSEAKMNLRIQTYDGVSV 104
Query: 160 IDILKKGIKELESACDRITETF 181
+L+KG+++L + CD + E F
Sbjct: 105 YSVLEKGLEDLMAMCDVVEEKF 126
>gi|118349948|ref|XP_001008255.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila]
gi|89290022|gb|EAR88010.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila
SB210]
Length = 150
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C T+ F E HT G+ + ++L +V+F GY++PHP++ ++ +R+Q +S ++LK+
Sbjct: 60 CATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQTI-KKNSNEVLKE 118
Query: 166 GIKELESACDRITETFNDAM 185
G+ L CD + + F+ AM
Sbjct: 119 GLDSLAGLCDVLNDKFDAAM 138
>gi|290983816|ref|XP_002674624.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
gi|284088215|gb|EFC41880.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
Length = 157
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 100 LNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ-VKDGYD 158
L + TF+F KE HT G+ + H+L +V F GY+VPHP + ++ +R+Q V + Y
Sbjct: 66 LGPDASVSTFIFHKESHTMGNSVRHMLMKNKKVSFCGYTVPHPLEAKMNLRLQTVGEKYT 125
Query: 159 SIDILKKGIKELESACDRITETFNDAMQC 187
+ + L++G+ L+ + + F++A+
Sbjct: 126 AKETLEEGLVNLQQVTETVMSKFDNALAA 154
>gi|391346209|ref|XP_003747371.1| PREDICTED: myeloid differentiation primary response protein
MyD88-like [Metaseiulus occidentalis]
Length = 284
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 45/306 (14%)
Query: 226 NHDVEKYRYEDSMDYIKIPIEAIRPKTRQVLNDKLCDIKQLM-SPENYQRDYRGLADLMD 284
+H + ED + + +P+ + P++ L+ L +++Q++ EN+ RD+R L L+
Sbjct: 7 DHTRQDRLMEDLDELLAVPVHGLGPRSLGFLSGCL-EVEQIIPGRENFYRDWRLLTQLVS 65
Query: 285 IKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIE 341
+ + D +++ + W +T I + +E I+RFDV DDC+ I
Sbjct: 66 LPEGTLARLQRSNDPVRETLQLWPVEAT-------IGQLVSAMEGIERFDVLDDCMESIL 118
Query: 342 EDCLYYENTRLGNSISKNGACMDDPSVI--TIEDVKSLNLGCGLAHYDALLLYDEADFDL 399
EDC + I + +PSV+ TI + A +++ D
Sbjct: 119 EDCRDF--------IRRKEYWQREPSVVQQTI--------------FQAFVIHVLDDVVF 156
Query: 400 AKQFNTQLNKMGFTVCDKDNSFLTGQFEHS-AFIQVMD-RCTCVIVLMSTHFMNNSLLHS 457
++ T++ G + F + + + I++M RC VIV++S +
Sbjct: 157 VREMVTRVEDEGVRLFVPARDFPAAEHNYMYSLIEIMQTRCLNVIVVVSRALSEDQEATR 216
Query: 458 LTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFL--QYCVKLKLNHYASNMEQFWDRLYYS 515
L + AE H T KI+PI+ ++ VGF+ C K+ N + W RL S
Sbjct: 217 LLENAERIHAQDT-SRKIVPIVL-EEAPHVGFMISNLC-KINFN-FPEAHAWAWPRLMDS 272
Query: 516 LKGVGK 521
L GVG+
Sbjct: 273 L-GVGR 277
>gi|403285030|ref|XP_003933845.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Saimiri boliviensis boliviensis]
Length = 134
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV KE HT G+ + ++L PEV+F GY+ P++ +I +RIQ + +++ +
Sbjct: 39 HCVTFVLHKEDHTLGNSLCYMLMKNPEVEFCGYTTTDPSESKINLRIQTQGALPAVEPFQ 98
Query: 165 KGIKELESACDRITETFNDAMQ-CKVILKLTLLVIQKASKN 204
+ + EL + C + + F +++ CK QKAS+N
Sbjct: 99 RVLNELMNVCQHVLDKFEASIKNCK---------DQKASRN 130
>gi|260948950|ref|XP_002618772.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
gi|238848644|gb|EEQ38108.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
Length = 154
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 67 SFQVLDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITALEALHQGL 126
Query: 168 KELESACDRITETFND 183
L C + ETF +
Sbjct: 127 DNLSELCTHVEETFTE 142
>gi|443895093|dbj|GAC72439.1| RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 154
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF F KE HT G+++ H + + P V F GY VPHP + ++F++IQ D L
Sbjct: 29 PNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITPTDAL 88
Query: 164 KKGIKEL 170
K+G +L
Sbjct: 89 KQGCTKL 95
>gi|145535985|ref|XP_001453720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421453|emb|CAK86323.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSI 160
N P TFVF E HT G+ + +IL + P V+F GYS+PHP++ ++ +R+Q +
Sbjct: 36 NSDPFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNETKE- 94
Query: 161 DILKKGIKELESACDRITETFNDAMQCK 188
++ G+K L CD I + F A++ K
Sbjct: 95 KVMNDGLKCLSQICDIIEDKFKQALEKK 122
>gi|242003519|ref|XP_002422761.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
Length = 117
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P V FAGY VPHP + + +RIQ Y D L
Sbjct: 28 PNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +A++ K
Sbjct: 88 MNAITDLLSELSLFEERFKEAIKEK 112
>gi|237831979|ref|XP_002365287.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|211962951|gb|EEA98146.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|221486858|gb|EEE25104.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221506554|gb|EEE32171.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 129
Score = 62.8 bits (151), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ I IL P V+FAGYSVPHP ++ IR+Q G ++ +L++
Sbjct: 38 TFTLTGEDHTLGNTIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTT-GESAMQLLRESF 96
Query: 168 KELESACDRITETFNDAMQ 186
+L S CD + +++A++
Sbjct: 97 DDLASICDHLDTLYDEALE 115
>gi|365988010|ref|XP_003670836.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
gi|343769607|emb|CCD25593.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
Length = 149
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ +++ L KG+
Sbjct: 69 SFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRIQTYGEITAVEALHKGL 128
Query: 168 KELESACDRITETF 181
++L CD + E F
Sbjct: 129 QDLMDLCDVVEEKF 142
>gi|303286291|ref|XP_003062435.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455952|gb|EEH53254.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 109
Score = 62.8 bits (151), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+TF + E HT G+ I ++L P+V AGYSVPHP + + +R+Q + ++
Sbjct: 6 KTFTLKDEDHTMGNAIRYMLNKNPQVALAGYSVPHPMERSVNVRVQTTGEVTATAAMRDA 65
Query: 167 IKELESACDRITETFNDAMQ 186
+ ++ S CD + +TF+ A++
Sbjct: 66 LLDIISVCDHVHDTFDLAIE 85
>gi|154414194|ref|XP_001580125.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121914339|gb|EAY19139.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 101
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
KP+ + +F E +T G+ + + P+V+F GY+VPHPA+ ++ +R+Q D DI
Sbjct: 14 KPSSGSMLFTGETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQADDDEKITDI 73
Query: 163 LKKGIKELESACDRITETFNDA 184
+ GI + + C+ F++A
Sbjct: 74 VLSGISDFKQWCNNTETEFDNA 95
>gi|426195181|gb|EKV45111.1| hypothetical protein AGABI2DRAFT_186894 [Agaricus bisporus var.
bisporus H97]
Length = 112
Score = 62.8 bits (151), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +L P+V+F GYSVPHP++ I +RIQ+ D S D L +
Sbjct: 23 TFQIHDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENVINVRIQMYDNISSFDALISAL 82
Query: 168 KELESACDRITETFNDAMQ 186
L+ C+ I + + ++++
Sbjct: 83 DNLDHLCESIEDAYLESLR 101
>gi|417408018|gb|JAA50583.1| Putative rna polymerase subunit l, partial [Desmodus rotundus]
Length = 138
Score = 62.4 bits (150), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 49 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 108
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 109 TNAITDLISELSLLEERFRVAIKDK 133
>gi|145541556|ref|XP_001456466.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424278|emb|CAK89069.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFVF E HT G+ + +IL + P V+F GYS+PHP++ ++ +R+Q + I+ G+
Sbjct: 43 TFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNETKE-KIMNDGL 101
Query: 168 KELESACDRITETFNDAMQCK 188
K L CD I + F A++ K
Sbjct: 102 KCLSQICDIIEDKFKKALENK 122
>gi|366995461|ref|XP_003677494.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
gi|342303363|emb|CCC71142.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
Length = 150
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C +F E HT G+ + +I+ P V+F GYS+PHP++ + +RIQ +++ +K
Sbjct: 68 CASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSIPHPSENFLNVRIQTYGDITAVEAFQK 127
Query: 166 GIKELESACDRITETFNDAMQ 186
G+++L CD + + F +++
Sbjct: 128 GLQDLMDLCDVVEDKFTQSIR 148
>gi|333398984|gb|AEF32114.1| MyD88 [Ruditapes philippinarum]
Length = 471
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 128/313 (40%), Gaps = 58/313 (18%)
Query: 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQ-------RDYRGLADL--------MD 284
Y P+ A+R +R+ L+ L D++ + N++ DY GLA+L M+
Sbjct: 21 YTFTPLRALRVASRRKLSGFL-DLEGALVVVNHEGGDSDVVNDYSGLAELAGFDYNSIMN 79
Query: 285 IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC 344
+K +P E + E WT + +V N+ T+L +E RFDV DC I DC
Sbjct: 80 MKRQKSPTFE-----LLEKWTGRNG---TVGNLWTYLFLME---RFDVLVDCRRPIIRDC 128
Query: 345 LYYENTRLGNSISKNGACMDDPSVITIE--------DVKSLNLGCGLAHYDALLLY---D 393
YE ++ DP+V T E K + YDA + + D
Sbjct: 129 EKYEENLQLAEDAERYRMEQDPTVTTSEMRVDETKFAAKGDVMTGKKTFYDAFICWSSED 188
Query: 394 EADFDLAKQFNTQLN-KMGFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMN 451
E D + +L K G + L G EH+ +++ RC V++LMS F+
Sbjct: 189 EKDRQFLYEMINELEVKRGLKLFVPGRDDLPGSAEHTITAYLIEARCRRVVILMSRTFLQ 248
Query: 452 NS-------LLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN 504
+S H+L A +K + I K PI + FL C + S+
Sbjct: 249 SSACDFQVKFAHALAPGARSKKLIPVIREKNTPI-----PRILRFLALC-----DFGKSD 298
Query: 505 M-EQFWDRLYYSL 516
M E WDRL ++
Sbjct: 299 MVEWVWDRLSTAI 311
>gi|428179316|gb|EKX48188.1| DNA-directed RNA polymerase subunit [Guillardia theta CCMP2712]
Length = 148
Score = 62.4 bits (150), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
FV E HT G+ + ++ P V F GYSVPHP + ++ + IQ K G + + L G+K
Sbjct: 64 FVMRNEDHTLGNALRIVISRNPNVTFCGYSVPHPLESKMHLHIQTK-GEEEDETLLPGLK 122
Query: 169 ELESACDRITETFNDA 184
E+ S CD + + F++A
Sbjct: 123 EIMSMCDHLGDVFDEA 138
>gi|332374220|gb|AEE62251.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y D L
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPSVLFAGYKLPHPLEHKFVLRIQTTSDYSPQDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +A++ K
Sbjct: 88 MHAITDLISELSLFEERFKEAIKEK 112
>gi|71005330|ref|XP_757331.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
gi|46096735|gb|EAK81968.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
Length = 164
Score = 62.4 bits (150), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF ++E HT G+ + +I+ P V+F GYS PHP++ +I +RIQ+ D ++D L+ I
Sbjct: 35 TFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDALRDAI 94
Query: 168 KELESACDRITETFNDAM 185
+ L+ I E ++ ++
Sbjct: 95 ENLDQLFAAIGEAYDRSL 112
>gi|91090444|ref|XP_966925.1| PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide [Tribolium castaneum]
gi|270013848|gb|EFA10296.1| hypothetical protein TcasGA2_TC012511 [Tribolium castaneum]
Length = 117
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY VPHP + + +RIQ Y + L
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +A++ K
Sbjct: 88 MNSITDLISELSLFEERFKEAIKEK 112
>gi|449703286|gb|EMD43765.1| DNA-directed RNA polymerase I and III subunit Rpc19, putative
[Entamoeba histolytica KU27]
Length = 85
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS--IDI 162
N ++ E E HTF + + H++ + P+ D GYS+PHP+D ++ RIQ + + D+
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDV 62
Query: 163 LKKGIKELESACDRITETFNDA 184
++ G KEL D + E + A
Sbjct: 63 MEDGCKELIRQMDELNELYEAA 84
>gi|448509278|ref|XP_003866104.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
gi|380350442|emb|CCG20664.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
Length = 125
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 38 SFQILEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALHQGL 97
Query: 168 KELESACDRITETFNDAMQ 186
L C + E F ++
Sbjct: 98 DNLSELCGVVEEKFEQKLK 116
>gi|343427064|emb|CBQ70592.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Sporisorium reilianum SRZ2]
Length = 164
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF ++E HT G+ + +I+ P V+F GYS PHP++ +I +RIQ+ D ++D L+ I
Sbjct: 35 TFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDHASALDALRDAI 94
Query: 168 KELESACDRITETFNDAM 185
+ L+ I E ++ ++
Sbjct: 95 ENLDQLFAAIGEAYDKSL 112
>gi|168025386|ref|XP_001765215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683534|gb|EDQ69943.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P TF E HT G+ + +L P V F GYSVPHP++ +I +R+Q G + D+L
Sbjct: 9 PRNATFSISDEDHTLGNSLRFVLNKDPRVAFCGYSVPHPSETRINVRVQTT-GVPARDVL 67
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K + +L + ++ TFN A++
Sbjct: 68 KDALNDLMAMNQHVSTTFNRAVE 90
>gi|297288087|ref|XP_001114645.2| PREDICTED: ras GTPase-activating protein 4 [Macaca mulatta]
Length = 642
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 553 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 612
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 613 TNAITDLISELSLLEERFRVAIKDK 637
>gi|340503209|gb|EGR29821.1| hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis]
Length = 143
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T++F E HT G+ + ++L +V+F GY++PHP++ ++ +R+Q +S ++LK+ +
Sbjct: 57 TYIFYDEDHTLGNALRYVLVKRKDVEFCGYTIPHPSENRLNLRLQTS-SKNSNEVLKESL 115
Query: 168 KELESACDRITETFNDAMQ 186
L CD + + F DA++
Sbjct: 116 DSLAGLCDVLNDKFVDALK 134
>gi|255075357|ref|XP_002501353.1| predicted protein [Micromonas sp. RCC299]
gi|226516617|gb|ACO62611.1| predicted protein [Micromonas sp. RCC299]
Length = 100
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
+TF + E HT G+ + ++L P+V AGYSVPHP + + +R+Q + ++
Sbjct: 6 KTFTLKDEDHTMGNAVRYMLNKNPQVSLAGYSVPHPMEKSVNVRVQTTGEVTATAAMRDA 65
Query: 167 IKELESACDRITETFNDAM 185
+ ++ S CD + +TF+ A+
Sbjct: 66 LLDIISVCDHVHDTFDTAV 84
>gi|426357372|ref|XP_004046017.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 171
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 43/89 (48%)
Query: 93 WELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
+E+ N PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q
Sbjct: 29 YEISINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 88
Query: 153 VKDGYDSIDILKKGIKELESACDRITETF 181
Y + I +L S + E F
Sbjct: 89 TTPDYSPQEAFTNAITDLISELSLLEERF 117
>gi|47211212|emb|CAF90169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 117
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRAQLMKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|126654283|ref|XP_001388406.1| RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117499|gb|EAZ51599.1| RNA polymerase II, putative [Cryptosporidium parvum Iowa II]
Length = 115
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P C +F+ E HT G++IT L P V FAGY VPHP + + IRIQ ++ +
Sbjct: 27 PCCGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQTRENTTPFVAI 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILK 192
+ IK ++ I +F D+M+ I K
Sbjct: 87 QNAIKSIQMESQVILNSFKDSMRNYPIYK 115
>gi|357608007|gb|EHJ65777.1| putative DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Danaus plexippus]
Length = 117
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE H+ G++I H L P+V FAGY VPHP + + +RIQ Y D
Sbjct: 29 NAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L S E F +A++ K
Sbjct: 89 NAITDLTSELSLFEERFKEAIKEK 112
>gi|83771710|dbj|BAE61840.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 152
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 108 TFVFEKEGHTFGS----------VITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGY 157
+F FE EGHT G+ V+ I+ V+F GY++PHP++ ++ +RIQ D
Sbjct: 52 SFQFEGEGHTLGNALRYAIMKKCVLLFIVSVVDIVEFCGYTIPHPSETKMNLRIQTYDTT 111
Query: 158 DSIDILKKGIKELESACDRITETFN 182
++++ L+KG+ L CD +T+ F
Sbjct: 112 NAVEALEKGLDSLMDLCDVVTDKFT 136
>gi|224006698|ref|XP_002292309.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220971951|gb|EED90284.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 83
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG-YDSIDILKK 165
RTFV E HT G+ + H+L + VDFAGY VPHP++ + +R+Q + +I+ LK+
Sbjct: 3 RTFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHLRVQTNEKPLTAIEALKE 62
Query: 166 GIKELESACDRITETFNDAM 185
L CD E + M
Sbjct: 63 ACSTLSKQCDFFLEQLENEM 82
>gi|340377747|ref|XP_003387390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Amphimedon queenslandica]
Length = 117
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ H L + P+V F+GY VPHP + + +RIQ Y + L
Sbjct: 28 PNAAIFTVFKEDHTLGNLLMHQLLNDPQVLFSGYKVPHPLEHKFVLRIQTTADYSPQEAL 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+ +L S +I F DA +
Sbjct: 88 SNALTDLISEVTKIETRFKDAAR 110
>gi|390459035|ref|XP_002744022.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like,
partial [Callithrix jacchus]
Length = 114
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|115487728|ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113648858|dbj|BAF29370.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|125578768|gb|EAZ19914.1| hypothetical protein OsJ_35508 [Oryza sativa Japonica Group]
gi|215768489|dbj|BAH00718.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186562|gb|EEC68989.1| hypothetical protein OsI_37758 [Oryza sativa Indica Group]
Length = 108
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT + + +L P V F GYS+PHPAD ++ IR+Q G + D+LK +
Sbjct: 13 TFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTT-GDPAKDVLKDSL 71
Query: 168 KELESACDRITETFNDAM 185
++L C + TF+ A+
Sbjct: 72 QDLMVMCQHVRGTFDTAV 89
>gi|339243709|ref|XP_003377780.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
gi|316973374|gb|EFV56975.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
Length = 114
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G +I L S P+V F G+ PHP + +I++R+Q I ++
Sbjct: 28 PNAYLFTLNKEDHTIGHLIKDHLMSNPKVLFVGFRAPHPLEHKIYLRLQTTPDVHPIRVM 87
Query: 164 KKGIKELESACDRITE 179
K + +L + CD + E
Sbjct: 88 KLALSDLVTMCDHVEE 103
>gi|2500634|sp|O08740.1|RPB11_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J; AltName:
Full=RNA polymerase II 13.3 kDa subunit; AltName:
Full=RPB14
gi|2081616|dbj|BAA19918.1| RNA polymerase II subuunit RPB14 [Mus musculus]
Length = 117
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRGAIKDK 112
>gi|444315668|ref|XP_004178491.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
gi|387511531|emb|CCH58972.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS 6284]
Length = 102
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + ++L P V+F GYS+PHP++ + +R+Q + D L +G+
Sbjct: 22 SFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQTYGDITASDALAQGL 81
Query: 168 KELESACDRITETFNDAMQ 186
++L CD + +TF +Q
Sbjct: 82 QDLMDLCDVVEDTFTRRIQ 100
>gi|324533414|gb|ADY49303.1| DNA-directed RNA polymerase II subunit RPB11 [Ascaris suum]
Length = 117
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I H L P+V FAGY PHP + + +RIQ D L
Sbjct: 28 PNAAIFTINKEDHTLGNLIKHQLLKDPQVLFAGYKNPHPLEHKFILRIQTTSDTSPSDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I +L + E F DA++
Sbjct: 88 TSAITDLMAELSLFEERFRDAIK 110
>gi|440794029|gb|ELR15200.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 122
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF EKE HT G+++ L S P+V FAGY VPHP I++Q + +
Sbjct: 29 NAATFNIEKEDHTIGNLLRMQLLSDPDVVFAGYKVPHPLKHTTVIKVQTNHNSSPVAAMT 88
Query: 165 KGIKELESACDRITETFNDAMQ 186
+ +L S + ++E FN A++
Sbjct: 89 NALTDLLSEFNLLSERFNSALE 110
>gi|146414666|ref|XP_001483303.1| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
TF E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ S++ L +
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 166 GIKELESACDRITETFNDAM 185
G+ L C I F++ +
Sbjct: 94 GLDNLSELCTVIETKFSEKI 113
>gi|190347624|gb|EDK39934.2| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
TF E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ S++ L +
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 166 GIKELESACDRITETFNDAMQC 187
G+ L C I F++ +
Sbjct: 94 GLDNLSELCTVIETKFSEKISA 115
>gi|390350815|ref|XP_786311.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Strongylocentrotus purpuratus]
Length = 108
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L P+V FAGY VPHP + + +R+Q Y +
Sbjct: 19 PNAAIFTVNKEDHTLGNILRAQLLKDPQVLFAGYKVPHPLEHKFVLRVQTTPDYSPQEAF 78
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E FN A++ K
Sbjct: 79 TNAITDLISEISLLEERFNAAVRDK 103
>gi|19401711|gb|AAL87672.1|AF468111_1 DNA-directed RNA polymerase II subunit 11 [Homo sapiens]
Length = 158
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 87 TNAITDLISELSLLEERF 104
>gi|406607619|emb|CCH41090.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 130
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+F E HT G+ + +I+ P+V+F GYS+PHP++ ++ IRIQ +++ L K
Sbjct: 41 AASFQILDEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETKLNIRIQTYGDMTAVEALHK 100
Query: 166 GIKELESACDRITETF 181
G+ +L C I + F
Sbjct: 101 GLDDLSDMCTHIEDKF 116
>gi|330843149|ref|XP_003293524.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
gi|325076130|gb|EGC29943.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
Length = 120
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
E + V RD + PN FV KE HT G+++ L + P++ FAGY +PHP +
Sbjct: 14 EGAKKVTMTRDTKI---PNASMFVILKEDHTVGNLVRMQLVADPDIIFAGYRMPHPLEHN 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
+ IRIQ +D +KK I+ L + I + F +Q K
Sbjct: 71 VNIRIQTNQNTTPLDSIKKSIECLTNEFLNIEDQFKTMVQRK 112
>gi|355560539|gb|EHH17225.1| hypothetical protein EGK_13571 [Macaca mulatta]
gi|355747568|gb|EHH52065.1| hypothetical protein EGM_12433 [Macaca fascicularis]
Length = 158
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 87 TNAITDLISELSLLEERF 104
>gi|5453932|ref|NP_006225.1| DNA-directed RNA polymerase II subunit RPB11-a [Homo sapiens]
gi|82697397|ref|NP_001032560.1| DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|157786902|ref|NP_001099391.1| polymerase (RNA) II (DNA directed) polypeptide J [Rattus
norvegicus]
gi|188219604|ref|NP_035423.2| DNA-directed RNA polymerase II subunit RPB11 [Mus musculus]
gi|350537195|ref|NP_001232039.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|126314418|ref|XP_001366429.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Monodelphis domestica]
gi|149755994|ref|XP_001504521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Equus
caballus]
gi|291415582|ref|XP_002724029.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Oryctolagus cuniculus]
gi|297680126|ref|XP_002817856.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pongo
abelii]
gi|301780882|ref|XP_002925859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ailuropoda melanoleuca]
gi|326931232|ref|XP_003211737.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Meleagris gallopavo]
gi|335284198|ref|XP_003124442.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Sus scrofa]
gi|335284200|ref|XP_003354537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Sus scrofa]
gi|344289757|ref|XP_003416607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Loxodonta africana]
gi|345801173|ref|XP_003434782.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Canis
lupus familiaris]
gi|348568806|ref|XP_003470189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cavia
porcellus]
gi|403285780|ref|XP_003934189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Saimiri
boliviensis boliviensis]
gi|410059453|ref|XP_003949275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pan
troglodytes]
gi|426254733|ref|XP_004021031.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Ovis
aries]
gi|1710661|sp|P52435.1|RPB11_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a;
Short=RNA polymerase II subunit B11-a; Short=RPB11a;
AltName: Full=DNA-directed RNA polymerase II subunit
J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit
gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|1220358|gb|AAD05361.1| RNA polymerase II [Homo sapiens]
gi|1730469|emb|CAA67075.1| RNA polymerase II subunit [Homo sapiens]
gi|4165267|emb|CAA57785.1| RNA polymerase II subunit [Homo sapiens]
gi|18848196|gb|AAH24165.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|27781313|gb|AAH42939.1| Polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|41351295|gb|AAH65711.1| POLR2J protein [Homo sapiens]
gi|74177404|dbj|BAE34594.1| unnamed protein product [Mus musculus]
gi|79160201|gb|AAI08227.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Bos
taurus]
gi|123992951|gb|ABM84077.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|123999873|gb|ABM87445.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|146218587|gb|AAI39903.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|146327795|gb|AAI41831.1| POLR2J protein [Homo sapiens]
gi|148687376|gb|EDL19323.1| polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|149063001|gb|EDM13324.1| polymerase (RNA) II (DNA directed) polypeptide J (predicted)
[Rattus norvegicus]
gi|158254462|dbj|BAF83204.1| unnamed protein product [Homo sapiens]
gi|197129074|gb|ACH45572.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|197129075|gb|ACH45573.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|296472981|tpg|DAA15096.1| TPA: DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|351698747|gb|EHB01666.1| DNA-directed RNA polymerase II subunit RPB11-a [Heterocephalus
glaber]
gi|380783319|gb|AFE63535.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|384944160|gb|AFI35685.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|410212832|gb|JAA03635.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410252394|gb|JAA14164.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410295166|gb|JAA26183.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|431898190|gb|ELK06885.1| DNA-directed RNA polymerase II subunit RPB11-a [Pteropus alecto]
gi|440908432|gb|ELR58446.1| DNA-directed RNA polymerase II subunit RPB11-a [Bos grunniens
mutus]
gi|1589095|prf||2210288A RNA polymerase II
Length = 117
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|50312213|ref|XP_456138.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645274|emb|CAG98846.1| KLLA0F23760p [Kluyveromyces lactis]
Length = 127
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +++ PEV+F GYS+PHP++ + IRIQ +++ L KG+
Sbjct: 47 SFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQTYGKITAVEALHKGL 106
Query: 168 KELESACDRITETFNDAMQ 186
+L CD + + F ++
Sbjct: 107 GDLMDMCDAVEDRFTQRIR 125
>gi|209737046|gb|ACI69392.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|221219392|gb|ACM08357.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|225704470|gb|ACO08081.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225714848|gb|ACO13270.1| DNA-directed RNA polymerase II subunit RPB11-a [Esox lucius]
Length = 117
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRQQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|407044128|gb|EKE42390.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
Length = 85
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS--IDI 162
N ++ E E HTF + + H++ + P+ D GYS+PHP+D ++ RIQ + D+
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSKKTPFDV 62
Query: 163 LKKGIKELESACDRITETFNDA 184
++ G KEL D + E + A
Sbjct: 63 MEDGCKELIRQMDELNELYEAA 84
>gi|351725297|ref|NP_001238111.1| uncharacterized protein LOC100500695 [Glycine max]
gi|255630968|gb|ACU15848.1| unknown [Glycine max]
Length = 107
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + + L P V F GYS+PHP+D ++ IR+Q G S ++LK
Sbjct: 13 TFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTT-GDPSREVLKDAC 71
Query: 168 KELESACDRITETFNDAMQCKVILKLTLLVIQKASKN 204
++L C + TF+ A ++ I KA KN
Sbjct: 72 QDLMLMCQHVRSTFDKA--------VSDFKISKARKN 100
>gi|395841302|ref|XP_003793484.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Otolemur garnettii]
Length = 134
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFV + HT G+ + +++ PEV+F GY++ HP++ +I + IQ + +++ L++G+
Sbjct: 41 TFVLHNKDHTLGNSLRYMIMKNPEVEFCGYTMAHPSESKINLHIQTQGALPAVEPLQRGL 100
Query: 168 KELESACDRITETFNDAMQ 186
EL + C + + F +++
Sbjct: 101 NELMNVCQHVLDKFEASIK 119
>gi|331230585|ref|XP_003327957.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309306947|gb|EFP83538.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 154
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K + TF + E HT G+ + +I+ PEV+F GYS+PHP++ ++ +RIQ+ D +
Sbjct: 32 KYDAMTFSLKDEDHTLGNSLRYIIMKNPEVEFCGYSLPHPSEPKLHLRIQMYDNKSAAGA 91
Query: 163 LKKGIKELE 171
L KG+ +LE
Sbjct: 92 LAKGLDDLE 100
>gi|391324947|ref|XP_003737003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Metaseiulus occidentalis]
Length = 117
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P V FAGY PHP + +I +R+Q ++ L
Sbjct: 28 PNASIFTINKEDHTLGNMIRAQLLKDPLVTFAGYKNPHPLEHKILLRVQTTPDSTPVEAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
K I +L S E F +A + K
Sbjct: 88 KSAINDLMSELSLFEERFQEAYKEK 112
>gi|354544993|emb|CCE41718.1| hypothetical protein CPAR2_802680 [Candida parapsilosis]
Length = 125
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 38 SFQILDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALHQGL 97
Query: 168 KELESACDRITETFNDAMQ 186
L C + E F ++
Sbjct: 98 DNLSELCGVVEEKFEQKLK 116
>gi|340711267|ref|XP_003394200.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus terrestris]
gi|350411736|ref|XP_003489439.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus impatiens]
Length = 117
Score = 60.5 bits (145), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP + + IRIQ Y D
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHDAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L + E F +A++ K
Sbjct: 88 MHAITDLIAELSLFEERFKEAIKEK 112
>gi|358332944|dbj|GAA51526.1| DNA-directed RNA polymerase II subunit RPB11 [Clonorchis sinensis]
Length = 177
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F +E HT G+++T L P V FAGY PHP + +I IR+Q +D+
Sbjct: 41 PNAAIFTLNREDHTVGNMLTCQLLKDPRVLFAGYKAPHPLEHKIVIRVQTLPPTTPLDVF 100
Query: 164 KKGIKELESACDRITETF 181
+K+L S I E F
Sbjct: 101 ISALKDLVSEVSNIEEQF 118
>gi|448111317|ref|XP_004201814.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359464803|emb|CCE88508.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNITAVEALHQ 103
Query: 166 GIKELESACDRITETFNDAMQC 187
G+ L C I + F++ ++
Sbjct: 104 GLDNLVELCGVIEDKFSEKIEA 125
>gi|126134273|ref|XP_001383661.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
gi|126095810|gb|ABN65632.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
Length = 119
Score = 60.5 bits (145), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 32 SFQILEEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITAVEALHQGL 91
Query: 168 KELESACDRITETFNDAM 185
L C I + F + +
Sbjct: 92 DNLAELCTVIGDKFEEKI 109
>gi|448097294|ref|XP_004198635.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359380057|emb|CCE82298.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ +RIQ +++ L +
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNVRIQTYGNITAVEALHQ 103
Query: 166 GIKELESACDRITETFNDAMQC 187
G+ L C I + F++ ++
Sbjct: 104 GLDNLVELCGVIEDNFSEKIEA 125
>gi|449544336|gb|EMD35309.1| hypothetical protein CERSUDRAFT_156998 [Ceriporiopsis subvermispora
B]
Length = 111
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ T+ E HT G+ + +L P+V+F GYSVPHP++ I +RIQ+ D S+ L
Sbjct: 19 SAATYQIHDESHTLGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQMYDNLSSLTALI 78
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
+ L+ C + + + ++ I
Sbjct: 79 TALSNLDDLCGTVEDAYKSSLATDPI 104
>gi|164661103|ref|XP_001731674.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
gi|159105575|gb|EDP44460.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
Length = 159
Score = 60.5 bits (145), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF+F KE HT G+++ H + + P V F GY VPHP + ++ ++IQ ++L
Sbjct: 29 PNAATFIFNKEDHTLGNMLRHAVLAQPGVLFCGYKVPHPLEPRVLVKIQTDGSLTPAEVL 88
Query: 164 KKGIKEL 170
++ +L
Sbjct: 89 QQACTKL 95
>gi|389747581|gb|EIM88759.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 101
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ TF E HT G+ + I+ P V+F GYSVPHP++ I +RIQ+ DG ++ L+
Sbjct: 9 SAATFQIFDESHTMGNALRWIIMKNPNVEFCGYSVPHPSENFIQLRIQMYDGLSALATLE 68
Query: 165 KGIKELESACDRITETFNDAM 185
K + +L++ I E++ ++
Sbjct: 69 KALYDLDALYATIEESYKKSL 89
>gi|308322417|gb|ADO28346.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus furcatus]
Length = 117
Score = 60.1 bits (144), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|317587873|ref|NP_001187715.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
gi|225706696|gb|ACO09194.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
gi|308323781|gb|ADO29026.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
Length = 117
Score = 60.1 bits (144), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|71028926|ref|XP_764106.1| RNA polymerase small subunit [Theileria parva strain Muguga]
gi|68351060|gb|EAN31823.1| RNA polymerase small subunit, putative [Theileria parva]
Length = 92
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF E E HT G+ + +L +V FAGYSVPHP + ++ +RIQ G ++++
Sbjct: 9 PNI-TFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTT-GQPAVEVF 66
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+ ++ CD +TE F AM+
Sbjct: 67 LDCLDDMVKICDILTEKFEKAMK 89
>gi|344232063|gb|EGV63942.1| RNA polymerase I and III subunit [Candida tenuis ATCC 10573]
Length = 123
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
+F E HT G+ + +++ PEV+F GYS+PHP++ ++ IRIQ +++ L
Sbjct: 43 AASFQIVDEDHTLGNSLRYVIMKNPEVEFVGYSIPHPSENKLNIRIQTYGSITAVEALHL 102
Query: 166 GIKELESACDRITETFNDAM 185
G++ L C I F +A+
Sbjct: 103 GLENLSQLCGVIETKFMEAL 122
>gi|113931298|ref|NP_001039095.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
gi|89268974|emb|CAJ83522.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
Length = 117
Score = 60.1 bits (144), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|410926916|ref|XP_003976914.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Takifugu rubripes]
Length = 117
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|328863713|gb|EGG12812.1| hypothetical protein MELLADRAFT_70512 [Melampsora larici-populina
98AG31]
Length = 143
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF + E HT G+ + +I+ P+V+F GYS+PHP++ ++ +RIQ+ D ++ L KG+
Sbjct: 30 TFCLKDEDHTLGNSLRYIIMKNPDVEFCGYSLPHPSEPKLNLRIQMYDNKSAVQALMKGL 89
Query: 168 KELE 171
+LE
Sbjct: 90 ADLE 93
>gi|348540573|ref|XP_003457762.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oreochromis niloticus]
Length = 117
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|350581483|ref|XP_003481048.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like,
partial [Sus scrofa]
Length = 99
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 10 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 69
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 70 TNAITDLISELSLLEERFRVAIKDK 94
>gi|321474423|gb|EFX85388.1| hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex]
Length = 117
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P V FAGY PHP + + +RIQ Y D L
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRCQLLKDPNVLFAGYKQPHPLEHKFILRIQSTPAYSPHDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F DA++ K
Sbjct: 88 MNAITDLISELSLLEERFRDAVREK 112
>gi|11595485|emb|CAC18368.1| RPB11a protein [Homo sapiens]
Length = 127
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 88 TNAITDLISELSLLEERF 105
>gi|320166880|gb|EFW43779.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 166
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV--KDGYDSIDILKK 165
T + E HT G+ + ++L P+V+F GYS+PHP++ +I +R+Q G ++D+++K
Sbjct: 72 TVAIKDEDHTIGNALRYMLMKNPDVEFCGYSIPHPSENKIHVRVQTVPGSGVSAVDVVRK 131
Query: 166 GIKELESACDRI 177
+++L C +
Sbjct: 132 ALEQLIEMCSHV 143
>gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2;
Short=RNA polymerase II subunit B11-b2; Short=RPB11b2;
AltName: Full=DNA-directed RNA polymerase II subunit J3
gi|11595478|emb|CAC18331.1| RPB11b2alpha protein [Homo sapiens]
gi|30172701|gb|AAP22342.1| unknown [Homo sapiens]
gi|162318032|gb|AAI56864.1| Polymerase (RNA) II (DNA directed) polypeptide J3 [synthetic
construct]
Length = 115
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKL 193
I +L S + E F C + L+L
Sbjct: 87 TNAITDLISELSLLEERFR---TCLLPLRL 113
>gi|389609993|dbj|BAM18608.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11 [Papilio
xuthus]
Length = 117
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I H L P+V FAGY +PHP + + +RIQ Y +
Sbjct: 29 NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
+ +L S E F +A++ K
Sbjct: 89 NALTDLTSELSLFEERFKEAIKEK 112
>gi|147902930|ref|NP_001088910.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
laevis]
gi|56788744|gb|AAH88797.1| LOC496260 protein [Xenopus laevis]
Length = 117
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|358054588|dbj|GAA99514.1| hypothetical protein E5Q_06215 [Mixia osmundae IAM 14324]
Length = 171
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + +++ P+V F GYS PHP++ +I +RIQ+ DG + + L+ G+
Sbjct: 29 TFCILEEDHTLGNALRYMIMKNPQVQFCGYSQPHPSEDKIHLRIQMYDGLSAYEALQSGL 88
Query: 168 KELESACDRITETFNDAM 185
LE I + + +
Sbjct: 89 ASLEDCILAIRDEYKSQL 106
>gi|332634984|ref|NP_001091084.2| DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
gi|74725005|sp|Q9GZM3.1|RPB1B_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1;
Short=RNA polymerase II subunit B11-b1; Short=RPB11b1;
AltName: Full=DNA-directed RNA polymerase II subunit J2
gi|11595474|emb|CAC18329.1| RPB11b1alpha protein [Homo sapiens]
gi|11595483|emb|CAC18332.1| RPB11b1alpha protein [Homo sapiens]
Length = 115
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKL 193
I +L S + E F C + L+L
Sbjct: 87 TNAITDLISELSLLEERFR---TCLLPLRL 113
>gi|225708058|gb|ACO09875.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
Length = 117
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTLSKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F +++ K
Sbjct: 88 TNAITDLISELSLLEERFRVSIKDK 112
>gi|388851779|emb|CCF54585.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Ustilago hordei]
Length = 164
Score = 59.7 bits (143), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF ++E HT G+ + +I+ P V+F GYS PHP++ +I +RIQ+ D +++ L+ I
Sbjct: 35 TFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDKASALEALRDAI 94
Query: 168 KELESACDRITETFNDAM 185
+ L+ I E ++ ++
Sbjct: 95 ENLDQLFAAIGEAYDRSL 112
>gi|256078288|ref|XP_002575428.1| DNA-directed rna polymerase II 13.3 kD polypeptide [Schistosoma
mansoni]
gi|226489581|emb|CAX74941.1| hypotherical protein [Schistosoma japonicum]
gi|226489583|emb|CAX74942.1| hypotherical protein [Schistosoma japonicum]
gi|226489585|emb|CAX74943.1| hypotherical protein [Schistosoma japonicum]
gi|360043356|emb|CCD78769.1| putative dna-directed rna polymerase II 13.3 kD polypeptide
[Schistosoma mansoni]
Length = 110
Score = 59.7 bits (143), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F +E HT G++IT L P V FAGY PHP + +I IR+ +D+
Sbjct: 28 PNAAIFTLNREDHTVGNMITCQLLKDPRVLFAGYKAPHPLEHKIVIRVHTAHPATPVDVF 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+K+L S I E F A +
Sbjct: 88 VSALKDLISEISNIEEQFRMATK 110
>gi|66773140|ref|NP_001019571.1| polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|66267264|gb|AAH95123.1| Polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|182890238|gb|AAI65488.1| Polr2j protein [Danio rerio]
Length = 117
Score = 59.7 bits (143), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + ++ IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|357502661|ref|XP_003621619.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355496634|gb|AES77837.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 115
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + + IL P V F GYS+PHP++ ++ +R+Q G + ++LK G
Sbjct: 13 TFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTT-GDPASEVLKDGC 71
Query: 168 KELESACDRITETFNDAM 185
++L C + TF A+
Sbjct: 72 QDLMLMCQHVRSTFGKAV 89
>gi|291232049|ref|XP_002735997.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Saccoglossus kowalevskii]
Length = 110
Score = 59.3 bits (142), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L P+V FAGY VPHP +F+ +R+Q Y +
Sbjct: 21 PNAAMFTVNKEDHTLGNLLRSQLLKDPQVLFAGYKVPHPLEFKFVLRVQTTPDYSPQEAF 80
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 81 TNAITDLISEVSLLEERFKVAVREK 105
>gi|307188715|gb|EFN73365.1| DNA-directed RNA polymerase II subunit RPB11 [Camponotus
floridanus]
Length = 117
Score = 59.3 bits (142), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP + + IRIQ Y +
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L + E F +A++ K
Sbjct: 88 MHAITDLIAELSLFEERFKEAIKEK 112
>gi|74177357|dbj|BAE34581.1| unnamed protein product [Mus musculus]
Length = 117
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V F GY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFVGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|392562075|gb|EIW55256.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 111
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ T+ E HT G+ + +L +V+F GYSVPHP++ I +RIQ+ DG S+ L
Sbjct: 19 SAATYQIHDESHTIGNALRWMLMKNEKVEFCGYSVPHPSENHINMRIQMYDGLSSLTALI 78
Query: 165 KGIKELESACDRITETFNDAMQ 186
+ +K+L+ C I + +++
Sbjct: 79 QALKDLDELCVTIDGEYAKSLE 100
>gi|58393315|ref|XP_319985.2| AGAP009209-PA [Anopheles gambiae str. PEST]
gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|55235548|gb|EAA14713.2| AGAP009209-PA [Anopheles gambiae str. PEST]
Length = 117
Score = 58.9 bits (141), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +AM+ K
Sbjct: 88 MNAITDLLSELSLFEERFREAMKEK 112
>gi|224059388|ref|XP_002299838.1| predicted protein [Populus trichocarpa]
gi|222847096|gb|EEE84643.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ TF F E HT + + L P V F GYS+PHP+D ++ IR+Q G + ++L
Sbjct: 9 PSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTT-GDPAREVL 67
Query: 164 KKGIKELESACDRITETFNDAM 185
K + L C + T + A+
Sbjct: 68 KDACQNLMVMCQHVRSTLDKAV 89
>gi|443895240|dbj|GAC72586.1| DNA-directed RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 164
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF ++E HT G+ + +++ P V+F GYS PHP++ +I +R+Q+ D ++D L+ I
Sbjct: 35 TFCLKEEDHTLGNSLRYMIMKDPRVEFCGYSNPHPSENKIHLRVQMYDRASALDALRDAI 94
Query: 168 KELESACDRITETF 181
+ L+ I E +
Sbjct: 95 ENLDQLFAAIGEAY 108
>gi|71421443|ref|XP_811802.1| DNA-directed RNA polymerase I/III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70876509|gb|EAN89951.1| DNA-directed RNA polymerase I/III subunit, putative [Trypanosoma
cruzi]
Length = 134
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + H+L EV AGY++PHP + ++ + +Q D +++ + +G+
Sbjct: 48 TIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQSTDY--AVEAVAEGL 105
Query: 168 KELESACDRITETFNDAMQ 186
+ L S CD ++F D M
Sbjct: 106 ERLASICDETLQSFEDCMH 124
>gi|71416664|ref|XP_810336.1| DNA-dependent RNA polymerases [Trypanosoma cruzi strain CL Brener]
gi|70874850|gb|EAN88485.1| DNA-dependent RNA polymerases, putative [Trypanosoma cruzi]
Length = 134
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + H+L EV AGY++PHP + ++ + +Q D +++ + +G+
Sbjct: 48 TIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQSTDY--AVEAVAEGL 105
Query: 168 KELESACDRITETFNDAMQ 186
+ L S CD ++F D M
Sbjct: 106 ERLASICDETLQSFEDCMH 124
>gi|168277626|dbj|BAG10791.1| RPB11b2 protein [synthetic construct]
Length = 158
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 87 TNAITDLIRELSLLEERF 104
>gi|157136940|ref|XP_001663871.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Aedes aegypti]
gi|108869812|gb|EAT34037.1| AAEL013700-PA [Aedes aegypti]
Length = 117
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + IRIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +A + K
Sbjct: 88 MNAITDLLSELSLFEERFKEAYKDK 112
>gi|62088376|dbj|BAD92635.1| MGC13098 protein variant [Homo sapiens]
Length = 180
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 49 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 108
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 109 TNAITDLIRELSLLEERF 126
>gi|281337679|gb|EFB13263.1| hypothetical protein PANDA_015431 [Ailuropoda melanoleuca]
Length = 97
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 18 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 77
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 78 TNAITDLISELSLLEERF 95
>gi|66530114|ref|XP_624001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis
mellifera]
gi|380030239|ref|XP_003698760.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Apis
florea]
gi|383860640|ref|XP_003705797.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Megachile rotundata]
gi|307206928|gb|EFN84774.1| DNA-directed RNA polymerase II subunit RPB11 [Harpegnathos
saltator]
Length = 117
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP + + IRIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L + E F +A++ K
Sbjct: 88 MHAITDLIAELSLFEERFKEAIKEK 112
>gi|328771902|gb|EGF81941.1| hypothetical protein BATDEDRAFT_23695 [Batrachochytrium
dendrobatidis JAM81]
Length = 125
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 86 LENSSPVWELRDNTLNVK----------PNCRTFVFEKEGHTFGSVITHILQSYPEVDFA 135
+ N+ P WEL +K PN TF KE HT G+++ L P+V FA
Sbjct: 1 MSNAPPTWELLLVPEGMKKISMEMDTKIPNAATFTVLKEDHTLGNILRMQLLKNPKVIFA 60
Query: 136 GYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
GY VPHP + Q ++IQ D+L++ + L
Sbjct: 61 GYKVPHPLEHQFILKIQTTPDTTPADVLQQEVANL 95
>gi|410984536|ref|XP_003998584.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Felis catus]
Length = 117
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY PHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKXPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|393911983|gb|EFO17249.2| DNA-directed RNA polymerase II subunit RPB11-a [Loa loa]
Length = 117
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ H L P+V FAGY PHP + + +R+Q D L
Sbjct: 28 PNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPADAL 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I +L + E F +A++
Sbjct: 88 TSAITDLMAELSLFEERFREAIK 110
>gi|339522065|gb|AEJ84197.1| DNA-directed RNA polymerase II subunit J-1 [Capra hircus]
Length = 117
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPWEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVILK 192
I +L S + E +C+V +K
Sbjct: 88 TNAITDLISELSLLEE------RCRVAIK 110
>gi|196012022|ref|XP_002115874.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
gi|190581650|gb|EDV21726.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
Length = 116
Score = 58.5 bits (140), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP ++ + IR+Q Y +
Sbjct: 28 PNACHFTIAKEDHTLGNIIRAQLLKDPQVIFAGYKVPHPLEYDVVIRVQTTSNYSPEEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
+ +L S + + + F A++ K
Sbjct: 88 SNALTDLISELNVLDDRFKAAVREK 112
>gi|388497488|gb|AFK36810.1| unknown [Lotus japonicus]
Length = 104
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + I + L P V F GYS+PHP+D ++ IR+Q G + ++LK
Sbjct: 13 TFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT-GEPAREVLKDSC 71
Query: 168 KELESACDRITETFNDAM 185
+ + C + TF+ A+
Sbjct: 72 QHMMLMCQHVRGTFDKAV 89
>gi|449265930|gb|EMC77057.1| DNA-directed RNA polymerase II subunit RPB11-a, partial [Columba
livia]
Length = 90
Score = 58.5 bits (140), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 11 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 70
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 71 TNAITDLISELSLLEERF 88
>gi|449459084|ref|XP_004147276.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
Length = 104
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT + + + L P V F GYS+PHP+D ++ IR+Q G + ++LK
Sbjct: 13 TFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT-GDPAREVLKDAC 71
Query: 168 KELESACDRITETFNDAM 185
+ L C + TF+ A+
Sbjct: 72 QNLMVVCQHVRNTFDKAV 89
>gi|357159114|ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Brachypodium distachyon]
gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Brachypodium distachyon]
Length = 119
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPTQAYN 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+S + + + F D
Sbjct: 89 QAINDLDSELENLKQAFED 107
>gi|397630084|gb|EJK69633.1| hypothetical protein THAOC_09087 [Thalassiosira oceanica]
Length = 145
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV------------- 153
RTFV E HT G+ + H+L + VDFAGY VPHP++ + IR+Q
Sbjct: 26 RTFVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHIRVQTNTNSKPNDYEEEE 85
Query: 154 KDG---YDSIDILKKGIKELESACDRITETFNDAM 185
KDG +I+ LK L CD + +A+
Sbjct: 86 KDGLQHLSAIEALKDACTTLSDQCDLVLAKLEEAL 120
>gi|308801407|ref|XP_003078017.1| trithorax-like (ISS) [Ostreococcus tauri]
gi|116056468|emb|CAL52757.1| trithorax-like (ISS) [Ostreococcus tauri]
Length = 2007
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV--KDGYDSIDILKK 165
TF E E HT G+ + ++L + P V GYS PHP + ++ +R+Q ++G + ++
Sbjct: 1921 TFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGAMRD 1980
Query: 166 GIKELESACDRITETFNDA 184
+ ++ S CD + E++ A
Sbjct: 1981 ALLDVISVCDHVHESYEKA 1999
>gi|149246468|ref|XP_001527691.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146447645|gb|EDK42033.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 135
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +++ PEV+F GYS+PHP++ ++ +RIQ +++ L +G+
Sbjct: 48 SFQILDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNVRIQTYGNISAVEALHQGL 107
Query: 168 KELESACDRI 177
L CD +
Sbjct: 108 DNLSELCDVV 117
>gi|242085108|ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
gi|241943672|gb|EES16817.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
Length = 108
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT + + +L P V F GYS+PHPA+ ++ IR+Q G + D+LK +
Sbjct: 13 TFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTT-GDPAKDVLKDAL 71
Query: 168 KELESACDRITETFNDAM 185
++L C I T + A+
Sbjct: 72 QDLMVMCQHIRGTLDTAV 89
>gi|412986016|emb|CCO17216.1| predicted protein [Bathycoccus prasinos]
Length = 133
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ + E HT G+ + + L P V AGYSVPHP + ++ +R+Q + +++ +
Sbjct: 37 TYSLQNEDHTLGNCLRYQLNKNPGVALAGYSVPHPMERKVNVRVQTIQPLTADGAMREAL 96
Query: 168 KELESACDRITETFNDAM 185
++ S C+ +TETF A+
Sbjct: 97 LDVVSICEHVTETFEAAL 114
>gi|387914122|gb|AFK10670.1| polymerase (RNA) II (DNA directed) polypeptide J [Callorhinchus
milii]
Length = 117
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+ I L P+V FAGY VPHP + ++ IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNTIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I +L S + E F A++
Sbjct: 88 TNAITDLISELSLLEERFRVAIK 110
>gi|225434732|ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Vitis vinifera]
gi|297745971|emb|CBI16027.3| unnamed protein product [Vitis vinifera]
Length = 105
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT + I L P V F GYS+PHP+D ++ IR+Q G + ++LK
Sbjct: 13 TFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTT-GDSAREVLKDAC 71
Query: 168 KELESACDRITETFNDAM 185
++L C + TF+ A+
Sbjct: 72 QDLMLMCQHVRSTFDKAV 89
>gi|449675933|ref|XP_004208520.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Hydra
magnipapillata]
Length = 117
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + + +RIQ Y +
Sbjct: 28 PNAAHFTVMKEDHTLGNLIRSQLLKDPQVIFAGYRVPHPLEHKFNVRIQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TSAITDLLSEISLLEERFKSALKEK 112
>gi|388495242|gb|AFK35687.1| unknown [Medicago truncatula]
Length = 115
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + + L P V F GYS+PHP++ ++ +R+Q G + ++LK G
Sbjct: 13 TFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTT-GDPASEVLKDGC 71
Query: 168 KELESACDRITETFNDAM 185
++L C + TF A+
Sbjct: 72 QDLMLMCQHVRSTFGKAV 89
>gi|384486353|gb|EIE78533.1| hypothetical protein RO3G_03237 [Rhizopus delemar RA 99-880]
Length = 145
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF+ E+E HT G+++ L P V FAGY VPHP + I++Q G L
Sbjct: 28 PNAATFIVEREDHTLGNMLRGQLLKDPRVLFAGYKVPHPLEHNFIIKVQSVPGTSPGKAL 87
Query: 164 KKGIKELESACDRITETFN 182
K EL S + + F+
Sbjct: 88 KDATSELISEINALKNKFD 106
>gi|170037676|ref|XP_001846682.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
gi|167880966|gb|EDS44349.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
Length = 117
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + IRIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +A + K
Sbjct: 88 MNAITDLLSELSLFEERFREAYKDK 112
>gi|401883042|gb|EJT47278.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 184
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 50/85 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + ++ P+V++ GYS PHP++ +I +R+Q+ +G ++D L++ +
Sbjct: 74 TFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLRRAL 133
Query: 168 KELESACDRITETFNDAMQCKVILK 192
L + I ++ +++ +K
Sbjct: 134 SNLRDLYETIGAQYDRSLKTDKYVK 158
>gi|294942414|ref|XP_002783512.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239896009|gb|EER15308.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 256
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C T+ + E HT G+ + ++L P+VDFAGYSVPHP + + IR+Q G + + +
Sbjct: 8 CGTYQLKNEDHTLGNSVRYVLAKNPKVDFAGYSVPHPNEPFVNIRVQTYPGMTADESMIW 67
Query: 166 GIKELESACDRITETFNDAMQCKVILKLTLLVIQKASKNLRVL 208
++EL+ + I + C I + + + A K + +L
Sbjct: 68 ALEELDVMFNTIQKN-----SCVFITYMLVFLRYAAEKRMTIL 105
>gi|238231721|ref|NP_001154047.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225703638|gb|ACO07665.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
Length = 117
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + + IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIKQQLLKDPQVLFAGYKVPHPLEHKTVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNVITDLISELSLLEERFRVAIKDK 112
>gi|19921456|ref|NP_609836.1| Rpb11 [Drosophila melanogaster]
gi|194758938|ref|XP_001961713.1| GF15107 [Drosophila ananassae]
gi|194880502|ref|XP_001974452.1| GG21750 [Drosophila erecta]
gi|195035867|ref|XP_001989393.1| GH10081 [Drosophila grimshawi]
gi|195114074|ref|XP_002001592.1| GI16585 [Drosophila mojavensis]
gi|195401096|ref|XP_002059150.1| GJ16235 [Drosophila virilis]
gi|195438427|ref|XP_002067138.1| GK24832 [Drosophila willistoni]
gi|195483889|ref|XP_002090472.1| GE13140 [Drosophila yakuba]
gi|195579746|ref|XP_002079722.1| GD21874 [Drosophila simulans]
gi|11387116|sp|Q9VJE4.1|RPB11_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.3 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|7298381|gb|AAF53606.1| Rpb11 [Drosophila melanogaster]
gi|190615410|gb|EDV30934.1| GF15107 [Drosophila ananassae]
gi|190657639|gb|EDV54852.1| GG21750 [Drosophila erecta]
gi|193905393|gb|EDW04260.1| GH10081 [Drosophila grimshawi]
gi|193912167|gb|EDW11034.1| GI16585 [Drosophila mojavensis]
gi|194156024|gb|EDW71208.1| GJ16235 [Drosophila virilis]
gi|194163223|gb|EDW78124.1| GK24832 [Drosophila willistoni]
gi|194176573|gb|EDW90184.1| GE13140 [Drosophila yakuba]
gi|194191731|gb|EDX05307.1| GD21874 [Drosophila simulans]
gi|343962697|gb|AEM72514.1| MIP32452p1 [Drosophila melanogaster]
Length = 117
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F DA++ K
Sbjct: 89 NAITDLLAELSLFEERFKDAIKEK 112
>gi|168012942|ref|XP_001759160.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689473|gb|EDQ75844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF ++E HT G+++ L P V FAGY +PHP +++ ++IQ +
Sbjct: 29 NAATFTLQREDHTIGNILRMQLHRDPSVLFAGYKLPHPLQYRVVVKIQTNSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFN-DAMQCKVILKLTLLVIQKA---SKNLRV 207
I +L D + TF + MQ ILK+ + V + + SKN+ +
Sbjct: 89 LAITDLTKELDHLKATFEVNLMQ---ILKVLVFVTEISLVISKNIHL 132
>gi|406700270|gb|EKD03443.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 162
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 50/85 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT G+ + ++ P+V++ GYS PHP++ +I +R+Q+ +G ++D L++ +
Sbjct: 52 TFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLRRAL 111
Query: 168 KELESACDRITETFNDAMQCKVILK 192
L + I ++ +++ +K
Sbjct: 112 SNLRDLYETIGAQYDRSLKTDKYVK 136
>gi|302817582|ref|XP_002990466.1| hypothetical protein SELMODRAFT_49918 [Selaginella moellendorffii]
gi|300141634|gb|EFJ08343.1| hypothetical protein SELMODRAFT_49918 [Selaginella moellendorffii]
Length = 92
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF F E HT G+ + +L P V F GYSVPHP++ ++ +R+Q G + ++ K +
Sbjct: 5 TFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTT-GAPAKEVFKDAL 63
Query: 168 KELESACDRITETFNDAMQ 186
++ + C+ ++ T + A++
Sbjct: 64 LDMVAICEHVSTTMDSAVE 82
>gi|336375362|gb|EGO03698.1| hypothetical protein SERLA73DRAFT_130145 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388418|gb|EGO29562.1| hypothetical protein SERLADRAFT_378617 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ T+ E HT G+ + +L P+V+F GYSVPHP++ I +RIQ+ D S+ L
Sbjct: 19 SAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENLIQLRIQMYDKLSSLTALL 78
Query: 165 KGIKELESACDRITETFNDAM 185
+ + L+ C I + + +++
Sbjct: 79 EALDNLDGLCVAIHDKYGESL 99
>gi|125985605|ref|XP_001356566.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|195147658|ref|XP_002014796.1| GL18757 [Drosophila persimilis]
gi|54644890|gb|EAL33630.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|194106749|gb|EDW28792.1| GL18757 [Drosophila persimilis]
Length = 117
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTAEYSPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F DA++ K
Sbjct: 89 NAITDLLAELSLFEERFKDAIKEK 112
>gi|62739171|ref|NP_116581.3| DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
Length = 115
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKL 193
I +L S + E F C + L+L
Sbjct: 87 TNAITDLISELSLLEERFR---TCLLPLRL 113
>gi|745556|prf||2016335A RNA polymerase II:SUBUNIT=14kD
Length = 113
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELES 172
I + E+
Sbjct: 87 TNAITDRET 95
>gi|156084318|ref|XP_001609642.1| RNA polymerase small subunit protein [Babesia bovis T2Bo]
gi|154796894|gb|EDO06074.1| RNA polymerase small subunit protein, putative [Babesia bovis]
Length = 96
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 97 DNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
D + PN TF E E HT G+ + +L +V FAGYSVPHP ++ IRIQ G
Sbjct: 2 DKVDSSSPNI-TFSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTT-G 59
Query: 157 YDSIDILKKGIKELESACDRITETFNDA 184
++ I + + +L C+ +T+ F DA
Sbjct: 60 KPAVKIFVECLDDLVEVCNVLTKAFIDA 87
>gi|326495250|dbj|BAJ85721.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518464|dbj|BAJ88261.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525789|dbj|BAJ88941.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 119
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 89 QAINDLDKELENLKQAFED 107
>gi|326500404|dbj|BAK06291.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 120
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 89 QAINDLDKELENLKQAFED 107
>gi|255722409|ref|XP_002546139.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136628|gb|EER36181.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 128
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ RIQ +++ G+
Sbjct: 41 SFQIIDEDHTLGNALRYIIMKNPEVEFVGYSIPHPSENKLNFRIQTYGNITAVEAFHMGL 100
Query: 168 KELESACDRITETFNDAMQ 186
L C I + F + ++
Sbjct: 101 DNLSELCGVIEDKFQETLE 119
>gi|302804069|ref|XP_002983787.1| hypothetical protein SELMODRAFT_49652 [Selaginella moellendorffii]
gi|300148624|gb|EFJ15283.1| hypothetical protein SELMODRAFT_49652 [Selaginella moellendorffii]
Length = 92
Score = 56.6 bits (135), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF F E HT G+ + +L P V F GYSVPHP++ ++ +R+Q G ++ K +
Sbjct: 5 TFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTT-GAPGKEVFKDAL 63
Query: 168 KELESACDRITETFNDAM 185
++ + C+ ++ T + A+
Sbjct: 64 LDMVAICEHVSTTMDSAV 81
>gi|390599234|gb|EIN08631.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 111
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+ TF E HT G+ + ++ P+V+F GYSVPHP++ I +RIQ+ D ++D L
Sbjct: 19 SAATFQIADETHTIGNALRWMIMKNPKVEFCGYSVPHPSEPNINVRIQMYDNLSALDALI 78
Query: 165 KGIKELESACDRITETF 181
+ L+ + E +
Sbjct: 79 DALNRLDDLFAAVDEQY 95
>gi|357111228|ref|XP_003557416.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Brachypodium distachyon]
Length = 120
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+GI +L+ + + + F D
Sbjct: 89 QGIDDLDKELEILKQAFED 107
>gi|449455052|ref|XP_004145267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
gi|449516242|ref|XP_004165156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 1 [Cucumis sativus]
gi|449516244|ref|XP_004165157.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 2 [Cucumis sativus]
Length = 108
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT + + L P V F GYS+PHP+D ++ IR+Q G + ++LK
Sbjct: 13 TFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT-GDPAREVLKDAC 71
Query: 168 KELESACDRITETFNDAM 185
+ L C + TF+ A+
Sbjct: 72 QNLMVVCQHVRNTFDKAV 89
>gi|393243778|gb|EJD51292.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 110
Score = 56.6 bits (135), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ E HT G+ + +L P+V+F GYS PHP++ I +RIQ+ D + S+ L + +
Sbjct: 22 TYCLHDESHTIGNALRWMLMKNPKVEFCGYSAPHPSEPVIHLRIQMYDRHSSLTALTEAL 81
Query: 168 KELESACDRITETFNDAMQ 186
L+ + E + ++++
Sbjct: 82 DNLDQLAIAVNEQYRNSLR 100
>gi|356531671|ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
max]
Length = 116
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFNDAM 185
+ I +L+ D + F M
Sbjct: 89 QSINDLDRELDHLKSAFEAEM 109
>gi|388516987|gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFNDAM 185
+ I +L+ D + F M
Sbjct: 89 QSINDLDKELDHLKNAFEADM 109
>gi|332030496|gb|EGI70184.1| DNA-directed RNA polymerase II subunit RPB11 [Acromyrmex
echinatior]
Length = 137
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP + + IRIQ Y +
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAF 87
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 88 MHAITDLIAELSLFEERF 105
>gi|312090992|ref|XP_003146821.1| RNA polymerase II [Loa loa]
Length = 124
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ H L P+V FAGY PHP + + +R+Q D L
Sbjct: 28 PNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPADAL 87
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 88 TSAITDLMAELSLFEERF 105
>gi|326435884|gb|EGD81454.1| DNA-directed RNA polymerase II subunit J [Salpingoeca sp. ATCC
50818]
Length = 202
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF +E HT G+++ L+ P V F+GY PHP + + +RIQ Y + L
Sbjct: 28 PNAGTFRINREDHTLGNMLASQLRRDPRVLFSGYRCPHPLEHHLLLRIQTTPDYSPKEAL 87
Query: 164 KKGIKELESACDRITETF 181
K + + + R+T F
Sbjct: 88 KTALADCRADITRMTHEF 105
>gi|357461253|ref|XP_003600908.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355489956|gb|AES71159.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 218
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HTF + + L P V F GYS+PHP++ ++ +R+Q G + ++LK G
Sbjct: 116 TFSLVNEDHTFSNSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTT-GDPASEVLKDGC 174
Query: 168 KELESACDRITETFNDAM 185
++L C + TF A+
Sbjct: 175 QDLMLMCQHVRSTFGKAV 192
>gi|392576553|gb|EIW69684.1| hypothetical protein TREMEDRAFT_44159 [Tremella mesenterica DSM
1558]
Length = 161
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
EN P+ D + PN T + +K+ HT G++I L P V FAGY VPHP +
Sbjct: 17 ENDKPLTITEDPKI---PNAATIMMKKQDHTMGNMIRAQLLLDPSVLFAGYKVPHPLEND 73
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
I I+IQ + + D LK+ L + F+ Q
Sbjct: 74 ILIKIQTDERSNPADALKRACTLLIQQLTEVKRQFSQQAQ 113
>gi|343962687|gb|AEM72509.1| MIP32352p1 [Drosophila melanogaster]
Length = 117
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F DA++ K
Sbjct: 89 NAITDLLAELFLFEERFKDAIKEK 112
>gi|402588406|gb|EJW82339.1| RNA polymerase II subunit [Wuchereria bancrofti]
Length = 166
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ H L P+V FAGY PHP + + +R+Q D L
Sbjct: 28 PNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPADAL 87
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 88 TSAITDLMAELSLFEERF 105
>gi|401885887|gb|EJT49968.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406697526|gb|EKD00785.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 160
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TFV + HT G+++ L P V FAGY +PHP + I I+IQ + + D L
Sbjct: 32 PNAATFVLRAQDHTLGNMLRAQLLLDPTVLFAGYKLPHPLENVISIKIQTDERSNPADAL 91
Query: 164 KKGIKELESACDRITETFND 183
K+ ++L + I + F D
Sbjct: 92 KRACQQLINQTLSIKKQFQD 111
>gi|253745917|gb|EET01521.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide [Giardia
intestinalis ATCC 50581]
Length = 95
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TFV E HT G+ I + L P+V FAGYSVPHPA+ ++ +RIQ D + D L +
Sbjct: 7 TFVIVNEDHTLGNCIRYCLNCNPDVSFAGYSVPHPAEPKLNLRIQ-SDIRSATDCLLQAA 65
Query: 168 KELESACD----RITETFNDA 184
+ + R+ E + DA
Sbjct: 66 DLMYNIASVLRQRLAEVYEDA 86
>gi|358054586|dbj|GAA99512.1| hypothetical protein E5Q_06213 [Mixia osmundae IAM 14324]
Length = 148
Score = 56.2 bits (134), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS---- 159
PN T + +KE HT G+++ L P V FAGY VPHP + +RIQV DG DS
Sbjct: 31 PNAATVIIKKEDHTIGNMLRGQLLHIPYVVFAGYRVPHPLQADVVLRIQV-DGKDSSQTP 89
Query: 160 -----------IDILKKGIKELESACDRITE 179
I IL + E++C TE
Sbjct: 90 TTALQTATRELILILAAARLQFEASCKSFTE 120
>gi|145348497|ref|XP_001418684.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578914|gb|ABO96977.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 55.8 bits (133), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TFV ++E HT G+++ L P+V FAGY PHP D +I +++ + L+
Sbjct: 29 NAGTFVLQREDHTIGNLLRMELHKNPDVVFAGYKNPHPTDHRIVLKVHTNANTTPVQALR 88
Query: 165 KGIKELESACDRITETFNDAM 185
+ L + +++ F D +
Sbjct: 89 DAVTNLRAEVGDLSQQFADEI 109
>gi|358248360|ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
gi|255626235|gb|ACU13462.1| unknown [Glycine max]
Length = 116
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFNDAM 185
+ + +L+ D + F M
Sbjct: 89 QSVNDLDRELDHLKSAFEAEM 109
>gi|410059467|ref|XP_003949277.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
3 [Pan troglodytes]
Length = 144
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 29 NACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFT 88
Query: 165 KGIKELESACDRITETF 181
I +L S + E F
Sbjct: 89 NAITDLISELSLLEERF 105
>gi|125557390|gb|EAZ02926.1| hypothetical protein OsI_25066 [Oryza sativa Indica Group]
gi|125599273|gb|EAZ38849.1| hypothetical protein OsJ_23266 [Oryza sativa Japonica Group]
Length = 135
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +R+ +
Sbjct: 44 NAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYT 103
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 104 QAINDLDKELENLKQAFED 122
>gi|444320463|ref|XP_004180888.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
gi|387513931|emb|CCH61369.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
Length = 118
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L P+V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNTVVITFEKEDHTLGNLIKSELLHDPKVLFAAYKVEHPLFARFKMRIQTVEGYDPKDAL 87
Query: 164 KKG 166
+K
Sbjct: 88 RKA 90
>gi|302843852|ref|XP_002953467.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
gi|300261226|gb|EFJ45440.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
Length = 104
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E+E HT + + L P V F GYS+PHP++ + +R+Q ++ +K
Sbjct: 12 TFSIEEEDHTLANSLRFFLNKNPHVSFCGYSMPHPSEELVNLRVQTTGQITAMQAVKAAC 71
Query: 168 KELESACDRITETFNDAM 185
++++ CD + T + A+
Sbjct: 72 EDMQQVCDHMRSTLSKAV 89
>gi|33359678|gb|AAP97076.1| RNA polymerase II subunit [Branchiostoma belcheri]
Length = 135
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L P+V FAGY VPHP + + +R+Q Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNLLRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 88 TNAITDLISEVSLLEERF 105
>gi|322785814|gb|EFZ12433.1| hypothetical protein SINV_02880 [Solenopsis invicta]
Length = 91
Score = 55.8 bits (133), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY VPHP + + IRIQ Y +
Sbjct: 13 PNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAF 72
Query: 164 KKGIKELESACDRITETF 181
I +L + E F
Sbjct: 73 MHAITDLIAELSLFEERF 90
>gi|341892406|gb|EGT48341.1| CBN-RPB-11 protein [Caenorhabditis brenneri]
Length = 122
Score = 55.8 bits (133), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +RIQ + D L
Sbjct: 27 PNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADAL 86
Query: 164 KKGIKELESACDRITETFNDAM-QC 187
I +L + F+ A+ QC
Sbjct: 87 TTAITDLVGELSLLERRFDAAIKQC 111
>gi|332867975|ref|XP_003339459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
1 [Pan troglodytes]
gi|332867977|ref|XP_003339460.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
2 [Pan troglodytes]
Length = 116
Score = 55.5 bits (132), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 29 NACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFT 88
Query: 165 KGIKELESACDRITETFNDAM 185
I +L S + E F +
Sbjct: 89 NAITDLISELSLLEERFRTCL 109
>gi|156542813|ref|XP_001607873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Nasonia vitripennis]
Length = 117
Score = 55.5 bits (132), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P+V FAGY +PHP + + IRIQ + +
Sbjct: 28 PNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKLPHPLEHKFVIRIQTTSDHTPHEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
+ +L + E F +A++ K
Sbjct: 88 MNAVTDLIAELSLFEERFKEAIKEK 112
>gi|403344569|gb|EJY71632.1| DNA-directed RNA polymerase I subunit D [Oxytricha trifallax]
Length = 154
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG-YDSIDILKKG 166
T+ F E HT G+++ +++ +V+F YSVPHP++ + +R+QV D+ +LK G
Sbjct: 67 TYSFLNEDHTLGNLLRNVIIKNNQVEFCAYSVPHPSEPIMNVRLQVAPKCGDTKKVLKHG 126
Query: 167 IKELESACDRITETFNDAM 185
+K + D + E F +A+
Sbjct: 127 LKRISKMSDVLGEKFQNAL 145
>gi|156372989|ref|XP_001629317.1| predicted protein [Nematostella vectensis]
gi|156216314|gb|EDO37254.1| predicted protein [Nematostella vectensis]
Length = 117
Score = 55.5 bits (132), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FV KE HT G+++ L P+V FAGY V HP + + +R+Q Y +
Sbjct: 28 PNAAHFVVNKEDHTLGNLLREQLLKDPQVIFAGYKVSHPLEHKFVLRVQTTSDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 THAITDLISEVSLLEERFKAAVRDK 112
>gi|84996827|ref|XP_953135.1| RNA polymerases I and III subunit (RPC19 homologue) [Theileria
annulata strain Ankara]
gi|65304131|emb|CAI76510.1| RNA polymerases I and III subunit (RPC19 homologue), putative
[Theileria annulata]
Length = 90
Score = 55.5 bits (132), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF E E HT G+ + +L +V FAGYSVPHP + ++ IRIQ G ++++
Sbjct: 9 PNI-TFCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNIRIQTT-GQPAVEVF 66
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+ ++ CD + E F A++
Sbjct: 67 LDCLDDMVKICDILREKFEKAIK 89
>gi|217070988|gb|ACJ83854.1| unknown [Medicago truncatula]
gi|388519401|gb|AFK47762.1| unknown [Medicago truncatula]
Length = 116
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I IRI +
Sbjct: 29 NAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QSINDLDKELDTLKSGF 105
>gi|71756079|ref|XP_828954.1| DNA-dependent RNA polymerases [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834340|gb|EAN79842.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334881|emb|CBH17875.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei
gambiense DAL972]
Length = 134
Score = 55.1 bits (131), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + H++ P V AGY++PHP + ++ + +Q + +++ + KG+
Sbjct: 48 TVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSSEY--AVETVAKGL 105
Query: 168 KELESACDRITETFNDAMQ 186
+ L + CD ++FN ++
Sbjct: 106 ERLAAICDETLKSFNACVE 124
>gi|198423020|ref|XP_002125909.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide J [Ciona intestinalis]
Length = 117
Score = 55.1 bits (131), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L P+V FAGY VPHP + + +R+Q Y +
Sbjct: 28 PNAAHFTVNKEDHTLGNILRTQLLKDPKVLFAGYKVPHPLEHKFILRVQTTGDYSPQEAF 87
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 88 TNAITDLISEISLLEERF 105
>gi|345567881|gb|EGX50783.1| hypothetical protein AOL_s00054g869 [Arthrobotrys oligospora ATCC
24927]
Length = 192
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKD 155
PNC TF F KE HT G+++ L P+V FAGY VPHP +R+Q D
Sbjct: 98 PNCVTFTFNKEDHTLGNLLRSQLLKDPKVLFAGYKVPHPLFPSFELRVQTTD 149
>gi|340059083|emb|CCC53456.1| putative DNA-dependent RNA polymerases [Trypanosoma vivax Y486]
Length = 135
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + H+L +V AGY++PHP + ++ + +Q Y +D++ +G+
Sbjct: 48 TVAFSHEDHTLGNSLRHVLMQNAQVTSAGYAIPHPLEEKMLLHVQ-STAY-VVDVVAEGL 105
Query: 168 KELESACDRITETFNDAM 185
++L S CD ++F++ +
Sbjct: 106 EQLASICDYTLKSFDNCI 123
>gi|145344709|ref|XP_001416869.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577095|gb|ABO95162.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 100
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK--DGYDSIDI 162
N TF E HT + + H L +V GYSVPHP + +R+Q +G +
Sbjct: 11 NEATFTLAGEDHTLANALRHALNGNADVALCGYSVPHPMKREARVRVQTTGANGTTAQGA 70
Query: 163 LKKGIKELESACDRITETFNDA 184
++ + ++ S CDR+ E + DA
Sbjct: 71 MRDALLDVISVCDRVREAYEDA 92
>gi|254579979|ref|XP_002495975.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
gi|238938866|emb|CAR27042.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
Length = 122
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 39/71 (54%)
Query: 94 ELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV 153
+LR + PN FEKE HT G++I L + P+V FA Y V HP + +RIQ
Sbjct: 18 KLRVDPDTKAPNAIVVTFEKEDHTLGNLIRAELLNDPKVLFAAYKVEHPLFARFKMRIQT 77
Query: 154 KDGYDSIDILK 164
+GYD D LK
Sbjct: 78 MEGYDPKDALK 88
>gi|115470799|ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA polymerase II 13.6K chain [Oryza sativa
Japonica Group]
gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|215704597|dbj|BAG94225.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 120
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +R+ +
Sbjct: 29 NAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 89 QAINDLDKELENLKQAFED 107
>gi|291000204|ref|XP_002682669.1| predicted protein [Naegleria gruberi]
gi|284096297|gb|EFC49925.1| predicted protein [Naegleria gruberi]
Length = 140
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%)
Query: 78 INYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGY 137
+N E+ +L + +LR+ + PN F+ KE HT G++I L V FAGY
Sbjct: 1 MNKPEAHELFDLEGEIKLREEKIEKMPNAANFIVNKEDHTLGNIIRMRLHEDKRVLFAGY 60
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
PHP + I I+IQ D + D L I L
Sbjct: 61 RNPHPLEHHIEIKIQTTDDIEPRDALVGTIDSL 93
>gi|221060743|ref|XP_002261941.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|193811091|emb|CAQ41819.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 126
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQALCQDPQVTFAAYRQPHPLQNTIEITIKPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + L S ++ ETF +Q
Sbjct: 91 LSDNVNSLLSDVSQLRETFKKKVQ 114
>gi|209879369|ref|XP_002141125.1| RNA polymerase II subunit RPB11 [Cryptosporidium muris RN66]
gi|209556731|gb|EEA06776.1| RNA polymerase II subunit RPB11, putative [Cryptosporidium muris
RN66]
Length = 121
Score = 54.7 bits (130), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 93 WELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
WE+ P C +F+ E HT G+++ L P V FA Y VPHP + + IRIQ
Sbjct: 26 WEVESRV----PCCGSFMIMLEDHTLGNLLRTQLLRDPSVIFAAYKVPHPLEPMVQIRIQ 81
Query: 153 VKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
++ ++ I+ + + + TF DAM+
Sbjct: 82 TRETTTPFVAMQNAIQMILAETQTVANTFKDAMR 115
>gi|389585987|dbj|GAB68716.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 126
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIKPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + L S ++ ETF +Q
Sbjct: 91 LSDNVNSLLSDVSQLRETFKKKVQ 114
>gi|242075042|ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
gi|241938640|gb|EES11785.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Length = 117
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYS 88
Query: 165 KGIKELESACDRITETFND 183
+ + +L+ + + + F D
Sbjct: 89 QAVNDLDKELEYLKQAFED 107
>gi|156102573|ref|XP_001616979.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805853|gb|EDL47252.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Plasmodium vivax]
Length = 126
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIKPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + L S ++ ETF +Q
Sbjct: 91 LSDNVNSLLSDVSQLRETFKKKVQ 114
>gi|452755179|gb|AGG10811.1| myeloid differentiation factor 88 b [Mytilus galloprovincialis]
Length = 462
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 131/313 (41%), Gaps = 61/313 (19%)
Query: 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPE-NYQRDYRGLADLMDIKA--------PPNPNC 293
IP++A+R +R + L D ++ + Y D+ GLA+L+ A +P
Sbjct: 28 IPLDALRRSSRSKIALYLDDQSDIIDEDCGYVTDWNGLAELIGFTALEMRKFGRQKSPTQ 87
Query: 294 EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTR 351
+ L+ DW + L+ ++ N+ +L L R DV DC F+ +D Y R
Sbjct: 88 DLLL-----DWEMTPALNPTLGNLWKYLIEL---GRLDVLQDCRSFVIKDAENYILTKER 139
Query: 352 LGN--------SISKNGAC---MDDPSVITIEDVKSLNLGCGLAHYDALLLYDE----AD 396
L N S+S++ A +D+ ++ D+ + +DA + Y+ D
Sbjct: 140 LANDYLPVQENSVSQSSAPDHYVDETRMLVTGDIDG-----SITLFDAFVCYNADSTGKD 194
Query: 397 FDLAKQFNTQLNK-MGFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNS- 453
K +L K +C L G + ++++ RC +I+++S ++++S
Sbjct: 195 IVFVKDMIKKLEKEYDLKLCVPGRDDLPGGSRYVTDAKLIESRCKRMIIVLSHEYLHSSA 254
Query: 454 ------LLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN--M 505
H+L A +K K+IP+L SV Q + L Y N M
Sbjct: 255 CDFQVKFAHALAPGARSK--------KLIPVLIEP---SVPIPQILRHVTLCDYTKNDLM 303
Query: 506 EQFWDRLYYSLKG 518
E FWDRL S+K
Sbjct: 304 EWFWDRLAKSVKA 316
>gi|393217041|gb|EJD02531.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 111
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +L P+V+F GYS PHP++ I +R+Q+ DG ++ L +
Sbjct: 22 TFRLNDESHTIGNALRWMLMKNPDVEFCGYSAPHPSENAIQVRVQMYDGKSALAALIAAL 81
Query: 168 KELESACDRITETFNDAMQC 187
++L+S I + + ++++
Sbjct: 82 EQLDSLFATIDDAYQNSIRA 101
>gi|88687070|emb|CAJ43896.1| RNA polymerase I subunit RPC19 [Trypanosoma brucei brucei]
Length = 134
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + H++ P V AGY++PHP + ++ + +Q + +++ + KG+
Sbjct: 48 TVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSSEY--AVETVAKGL 105
Query: 168 KELESACDRITETFNDAMQ 186
+ L + CD + FN ++
Sbjct: 106 ERLAAICDETLKKFNACVE 124
>gi|242247465|ref|NP_001156261.1| DNA-directed RNA polymerase II subunit RPB11-a [Acyrthosiphon
pisum]
gi|239799164|dbj|BAH70515.1| ACYPI008208 [Acyrthosiphon pisum]
Length = 117
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY PHP + + +RIQ Y D L
Sbjct: 29 NAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKQPHPLEHKFELRIQTTSDYTPQDALT 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F +A++ K
Sbjct: 89 NSITDLLAELSLFEERFKEALREK 112
>gi|321251977|ref|XP_003192244.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317458712|gb|ADV20457.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 162
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T V ++ HT G+++ L P V FAGY VPHP + I ++IQ + + + L
Sbjct: 28 PNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPAEAL 87
Query: 164 KKGIKEL 170
K+ EL
Sbjct: 88 KRACHEL 94
>gi|403416590|emb|CCM03290.1| predicted protein [Fibroporia radiculosa]
Length = 142
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
E PV + D + PN T K+ HT G++I L S P+V FAGY VPHP
Sbjct: 14 EGERPVEVIEDTKI---PNAATIKVMKQDHTLGNLIRAQLLSMPQVLFAGYKVPHPLQPH 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITE 179
I+IQ +I LE AC+++ +
Sbjct: 71 FLIKIQTDGTATPTEI-------LEQACNKLIQ 96
>gi|242068175|ref|XP_002449364.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
gi|241935207|gb|EES08352.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
Length = 107
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT + +L P V F GYS+PHPA+ ++ IR+Q G + D+LK +
Sbjct: 13 TFSIMEEDHTLANSARFVLNQDPRVAFCGYSIPHPAEKKVNIRVQTT-GDAAKDVLKDAL 71
Query: 168 KELESACDRITETFNDAM 185
+ L C + T ++A+
Sbjct: 72 QNLMIMCQHVRGTLDNAV 89
>gi|325193331|emb|CCA27671.1| DNAdirected RNA polymerase II subunit J putative [Albugo laibachii
Nc14]
Length = 120
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F +E HT G++I P V F+GY PHP + I +RIQ D ++ L
Sbjct: 28 PNAGKFTILREDHTIGNLIRMQSLRDPNVTFSGYRHPHPLNHDIVVRIQTNDASSPVEAL 87
Query: 164 KKGIKELESACDRITETF 181
+ +L + D + + F
Sbjct: 88 ANCLDDLSTVFDELVKKF 105
>gi|193671627|ref|XP_001943405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Acyrthosiphon pisum]
Length = 119
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK-DGYDSIDIL 163
N F KE HT G++I + L P V FAGY +PHP + + +RIQ Y D L
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFELRIQTSCPEYTPQDAL 88
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
+ +L + E F DA++ K
Sbjct: 89 TNSLTDLLAELSLFEERFKDALKQK 113
>gi|357157134|ref|XP_003577696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 107
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT + + +L P V F GYS+PHPAD ++ IR+Q G + D++K +
Sbjct: 13 SFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTT-GDPAKDVMKDAL 71
Query: 168 KELESACDRITETFNDAM 185
++L + TF+ A+
Sbjct: 72 QDLMVMGQHVRATFDKAV 89
>gi|268533032|ref|XP_002631644.1| C. briggsae CBR-RPB-11 protein [Caenorhabditis briggsae]
gi|74845978|sp|Q60SM4.1|RPB11_CAEBR RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
Length = 122
Score = 53.9 bits (128), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +R+Q + D L
Sbjct: 27 PNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>gi|402222352|gb|EJU02419.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 149
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T V K+ HT ++I L P+V FAGY PHP D ++IQ +++L
Sbjct: 28 PNAATIVVAKQDHTLANMIRGYLLKNPKVLFAGYKAPHPLDPHFILKIQTDGTSTPLEVL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
++ L + +I F + Q K
Sbjct: 88 QETCNALIALVGKIDAKFREQFQQK 112
>gi|255553542|ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
gi|223543084|gb|EEF44619.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
Length = 156
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTVEREDHTIGNILRMQLHRDENVLFAGYRLPHPLQYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
+ I +L+ D + F + ++ K
Sbjct: 89 QAINDLDKELDHLKSAFEECLRPK 112
>gi|302764430|ref|XP_002965636.1| hypothetical protein SELMODRAFT_28501 [Selaginella moellendorffii]
gi|300166450|gb|EFJ33056.1| hypothetical protein SELMODRAFT_28501 [Selaginella moellendorffii]
Length = 51
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
TF E HTFG+ I ++L P V F GYSVPHP+D ++ +R+Q
Sbjct: 3 TFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQ 47
>gi|58263494|ref|XP_569157.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134108320|ref|XP_777111.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259796|gb|EAL22464.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223807|gb|AAW41850.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 162
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T V ++ HT G+++ L P V FAGY VPHP + I ++IQ + + + L
Sbjct: 28 PNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPAEAL 87
Query: 164 KKGIKEL 170
K+ EL
Sbjct: 88 KRACHEL 94
>gi|226504996|ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
gi|194696560|gb|ACF82364.1| unknown [Zea mays]
gi|194699868|gb|ACF84018.1| unknown [Zea mays]
gi|194706942|gb|ACF87555.1| unknown [Zea mays]
gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195628620|gb|ACG36140.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|413937791|gb|AFW72342.1| DNA-directed RNA polymerase II subunit J isoform 1 [Zea mays]
gi|413937792|gb|AFW72343.1| DNA-directed RNA polymerase II subunit J isoform 2 [Zea mays]
gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase II subunit J isoform 3 [Zea mays]
gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase II subunit J isoform 4 [Zea mays]
gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase II subunit J isoform 5 [Zea mays]
Length = 120
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 89 QAINDLDKELEYLKQAFED 107
>gi|357160551|ref|XP_003578801.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 108
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT + + +L P V F GYS+PHPAD ++ IR+Q G + D++ +
Sbjct: 13 SFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTT-GDPAKDVMVDAL 71
Query: 168 KELESACDRITETFNDAM 185
++L C TF+ A+
Sbjct: 72 QDLMVMCQHARGTFDTAV 89
>gi|149641980|ref|XP_001514119.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ornithorhynchus anatinus]
Length = 117
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V Y VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLLQEYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>gi|17536663|ref|NP_496942.1| Protein RPB-11 [Caenorhabditis elegans]
gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|3924901|emb|CAB03455.1| Protein RPB-11 [Caenorhabditis elegans]
Length = 122
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +RIQ + D L
Sbjct: 27 PNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>gi|384244757|gb|EIE18255.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 122
Score = 53.5 bits (127), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF ++E HT G+++ L EV FAGY PHP D+ I I++Q K +++
Sbjct: 29 NAATFTLQREDHTVGNLVRMQLLRDKEVTFAGYKFPHPLDYHILIKVQTKGKKSPREVMD 88
Query: 165 KGIKELESACDRITE 179
+ +L CD +
Sbjct: 89 DALTDL---CDEFED 100
>gi|449436317|ref|XP_004135939.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449488830|ref|XP_004158185.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 53.5 bits (127), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF+ E+E HT G+++ L V FAGY +PHP ++I +RIQ +
Sbjct: 29 NAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQTASQSSPMQAYN 88
Query: 165 KGIKELESACD 175
+ I +L+ D
Sbjct: 89 QAINDLDKELD 99
>gi|157871878|ref|XP_001684488.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68127557|emb|CAJ05635.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 137
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 111 FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
F E HT G+ + H+L V AGY++PHP + ++ + +Q D +++ + KG++ L
Sbjct: 52 FSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQASDY--AVEAVAKGLERL 109
Query: 171 ESACDRITETFNDAM 185
CD +F++ M
Sbjct: 110 AEICDDTISSFDNCM 124
>gi|342185977|emb|CCC95462.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343469253|emb|CCD17721.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 131
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T F E HT G+ + ++L P+V AGY++PHP + + +++ V+ +D + KG+
Sbjct: 48 TVTFSHEDHTLGNPLRYVLMQDPDVTSAGYAIPHPLEAK--MQLHVQSNVYVVDAVVKGL 105
Query: 168 KELESACDRITETFNDAMQCKV 189
+ L C+ F D M+ +
Sbjct: 106 ERLAEICEVTLRNFEDCMRASI 127
>gi|301093050|ref|XP_002997374.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
Length = 119
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F +E HT G++I L P V F+GY PHP I +R+Q D ++ L
Sbjct: 29 NAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTNDASSPVEALA 88
Query: 165 KGIKELESACDRITETF 181
+ +L + D I + F
Sbjct: 89 NSLDDLSTEFDEIAQKF 105
>gi|255080692|ref|XP_002503919.1| predicted protein [Micromonas sp. RCC299]
gi|226519186|gb|ACO65177.1| predicted protein [Micromonas sp. RCC299]
Length = 101
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N T+V +KE HT G+++ L P V FAGY VPHP+D +I I++ + +
Sbjct: 29 NAGTYVVQKEDHTLGNIVRMQLHRDPNVVFAGYQVPHPSDNRIVIKVHTNKNSSPMQAMT 88
Query: 165 KGIKELESACDRI 177
+ + L R+
Sbjct: 89 ESVNCLSEEVSRL 101
>gi|146092259|ref|XP_001470246.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|398018276|ref|XP_003862319.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
gi|134085040|emb|CAM69441.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|322500548|emb|CBZ35625.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
Length = 137
Score = 53.1 bits (126), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 111 FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
F E HT G+ + H+L V AGY++PHP + ++ + +Q D +++ + KG++ L
Sbjct: 52 FSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQASDY--AVEAVAKGLERL 109
Query: 171 ESACDRITETFNDAM 185
CD +F++ M
Sbjct: 110 AEICDDTISSFDNCM 124
>gi|242047078|ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
gi|241924662|gb|EER97806.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Length = 120
Score = 53.1 bits (126), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTMSQSSPTQAYS 88
Query: 165 KGIKELESACDRITETFND 183
+ + +L+ + + + F D
Sbjct: 89 QAVNDLDKELEYLKQAFED 107
>gi|308480489|ref|XP_003102451.1| CRE-RPB-11 protein [Caenorhabditis remanei]
gi|308261183|gb|EFP05136.1| CRE-RPB-11 protein [Caenorhabditis remanei]
Length = 122
Score = 53.1 bits (126), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +RIQ D L
Sbjct: 27 PNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQTTSQTTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>gi|303271317|ref|XP_003055020.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462994|gb|EEH60272.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 152
Score = 53.1 bits (126), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
N TFV +KE HT G+ + L PEV F+GY VPHP+D +I I+++
Sbjct: 29 NAGTFVVQKEDHTLGNAVRMQLHRDPEVVFSGYQVPHPSDNRIVIKVR 76
>gi|154311455|ref|XP_001555057.1| hypothetical protein BC1G_06580 [Botryotinia fuckeliana B05.10]
Length = 110
Score = 53.1 bits (126), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
+F F+KE HT G+ + +I+ P+V+F GYS+PHP++ + IRIQ
Sbjct: 63 SFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQ 107
>gi|167525603|ref|XP_001747136.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774431|gb|EDQ88060.1| predicted protein [Monosiga brevicollis MX1]
Length = 119
Score = 52.8 bits (125), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF +E HT G+++ L P V FAGY VPHP + I +R+ Y + L
Sbjct: 28 PNAGTFRMNREDHTVGNLLASQLAKDPRVLFAGYKVPHPLEHYILLRVHTTAQYSPKEAL 87
Query: 164 KKGIKEL 170
K+ + ++
Sbjct: 88 KQALHDV 94
>gi|225708772|gb|ACO10232.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 57
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 134 FAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
F GYS+PHPA+ Q+ +RIQ + D L++G+++L+ C ++ FN A+
Sbjct: 4 FCGYSIPHPAEDQMLLRIQTVSSVPAQDALRRGLEDLKDMCSVVSSKFNSAL 55
>gi|405118462|gb|AFR93236.1| DNA-directed RNA polymerase II kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 162
Score = 52.8 bits (125), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T V ++ HT G+++ L P V FAGY VPHP + I ++IQ + + + L
Sbjct: 28 PNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPAEAL 87
Query: 164 KKGIKEL 170
K+ EL
Sbjct: 88 KRACHEL 94
>gi|212546345|ref|XP_002153326.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064846|gb|EEA18941.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 100
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 35/46 (76%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV 153
+F F++EGHT G+ + +++ P+V+F GY++PHP++ ++ +RIQ
Sbjct: 45 SFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQT 90
>gi|413937800|gb|AFW72351.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 120
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTMSQSSLTQAYT 88
Query: 165 KGIKELESACDRITETFND 183
+ I +L+ + + + F D
Sbjct: 89 QAINDLDKELEYLKQAFED 107
>gi|327287597|ref|XP_003228515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Anolis carolinensis]
Length = 117
Score = 52.8 bits (125), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 41/85 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+VI L P+V FAGY V HP + +I I +Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNVIKLQLLEDPQVLFAGYKVLHPLEHKIIIWVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TDAITDLISELSILEERFGVAIKDK 112
>gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae]
Length = 119
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F +E HT G++I L P V F+GY PHP I +R+Q D ++ L
Sbjct: 29 NAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQTNDASSPVEALA 88
Query: 165 KGIKELESACDRITETF 181
+ +L + D I + F
Sbjct: 89 NSLDDLSTEFDEIAQKF 105
>gi|443693124|gb|ELT94560.1| hypothetical protein CAPTEDRAFT_4697 [Capitella teleta]
Length = 130
Score = 52.4 bits (124), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 39/83 (46%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+ + L P+V FAGY VPHP + + +RIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNALRTQLLKDPKVLFAGYKVPHPLENKFVLRIQTVAEYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I +L + + E F A +
Sbjct: 88 TNAITDLMAEVSLLEENFKVAFK 110
>gi|159117927|ref|XP_001709183.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide [Giardia
lamblia ATCC 50803]
gi|157437298|gb|EDO81509.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide [Giardia
lamblia ATCC 50803]
Length = 101
Score = 52.4 bits (124), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
TFV E HT G+ I + L P V FAGYSVPHPA+ ++ +RIQ
Sbjct: 7 TFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQ 51
>gi|111226740|ref|XP_642530.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74861274|sp|Q86JJ5.1|RPB11_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|90970744|gb|EAL68596.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 120
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ + V +RD + PN F KE HT G++I L + ++ FAGY +PHP +
Sbjct: 14 DGAKKVTMVRDTKI---PNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHN 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
+ IRIQ + + ++ ++K ++ L + +F + +Q K
Sbjct: 71 VNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKK 112
>gi|294948044|ref|XP_002785588.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239899567|gb|EER17384.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 52.4 bits (124), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF E HT + L +V FAGY VPHP + ++ +R+QV ++ +K
Sbjct: 46 NTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMK 105
Query: 165 KGIKELESACDRITETFNDAMQ 186
+ +K L S D++ + F+ +++
Sbjct: 106 EALKSLRSKGDQLEKEFDRSLK 127
>gi|147832705|emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
Length = 129
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I IRI +
Sbjct: 42 NAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYN 101
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 102 QAINDLDKELDYLKNAF 118
>gi|294883186|ref|XP_002769975.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239873898|gb|EER02672.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 52.4 bits (124), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF E HT + L +V FAGY VPHP + ++ +R+QV ++ +K
Sbjct: 46 NTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMK 105
Query: 165 KGIKELESACDRITETFNDAMQ 186
+ +K L S D++ + F+ +++
Sbjct: 106 EALKSLRSKGDQLEKEFDRSLK 127
>gi|168000755|ref|XP_001753081.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695780|gb|EDQ82122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 117
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N TF E+E HT G+VI L P V FAGY +PHP +++ ++IQ +
Sbjct: 29 NAATFTVEREDHTVGNVIRMQLHRDPSVLFAGYRLPHPLQYRLVVKIQTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
I +L D + F
Sbjct: 89 LAITDLIKELDHLKAVF 105
>gi|355712710|gb|AES04440.1| polymerase I polypeptide D, 16kDa [Mustela putorius furo]
Length = 90
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTR 87
>gi|240271228|gb|ACS53479.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271236|gb|ACS53483.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
Length = 84
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 15 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 74
Query: 164 KKGIKELES 172
I +L S
Sbjct: 75 MNAITDLLS 83
>gi|240271204|gb|ACS53467.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271244|gb|ACS53487.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271260|gb|ACS53495.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271266|gb|ACS53498.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271270|gb|ACS53500.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271272|gb|ACS53501.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271280|gb|ACS53505.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271282|gb|ACS53506.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271284|gb|ACS53507.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271286|gb|ACS53508.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271288|gb|ACS53509.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271296|gb|ACS53513.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271308|gb|ACS53519.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 10 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 69
Query: 164 KKGIKELES 172
I +L S
Sbjct: 70 MNAITDLLS 78
>gi|240271196|gb|ACS53463.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271198|gb|ACS53464.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271200|gb|ACS53465.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271202|gb|ACS53466.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271206|gb|ACS53468.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271208|gb|ACS53469.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271210|gb|ACS53470.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271212|gb|ACS53471.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271214|gb|ACS53472.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271216|gb|ACS53473.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271218|gb|ACS53474.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271220|gb|ACS53475.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271222|gb|ACS53476.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271224|gb|ACS53477.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271226|gb|ACS53478.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271230|gb|ACS53480.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271232|gb|ACS53481.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271234|gb|ACS53482.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271238|gb|ACS53484.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271240|gb|ACS53485.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271242|gb|ACS53486.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271246|gb|ACS53488.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271248|gb|ACS53489.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271250|gb|ACS53490.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271252|gb|ACS53491.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271254|gb|ACS53492.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271256|gb|ACS53493.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271262|gb|ACS53496.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271264|gb|ACS53497.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271268|gb|ACS53499.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271274|gb|ACS53502.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271276|gb|ACS53503.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271278|gb|ACS53504.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271290|gb|ACS53510.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271292|gb|ACS53511.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271294|gb|ACS53512.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271298|gb|ACS53514.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271300|gb|ACS53515.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271302|gb|ACS53516.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271304|gb|ACS53517.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271306|gb|ACS53518.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271310|gb|ACS53520.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271312|gb|ACS53521.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271314|gb|ACS53522.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271316|gb|ACS53523.1| putative DNA-directed RNA polymerase II subunit J [Anopheles merus]
gi|240271318|gb|ACS53524.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
quadriannulatus]
gi|240271320|gb|ACS53525.1| putative DNA-directed RNA polymerase II subunit J [Anopheles vagus]
gi|240271322|gb|ACS53526.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271324|gb|ACS53527.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271326|gb|ACS53528.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271328|gb|ACS53529.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271330|gb|ACS53530.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271332|gb|ACS53531.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271334|gb|ACS53532.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
gi|240271336|gb|ACS53533.1| putative DNA-directed RNA polymerase II subunit J [Anopheles melas]
Length = 85
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 16 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 75
Query: 164 KKGIKELES 172
I +L S
Sbjct: 76 MNAITDLLS 84
>gi|240271258|gb|ACS53494.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 10 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 69
Query: 164 KKGIKELES 172
I +L S
Sbjct: 70 MXAITDLLS 78
>gi|311259036|ref|XP_003127906.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Sus
scrofa]
Length = 140
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F +KE HT G+VI L P+V FAG VPHP + +I + +Q Y + L
Sbjct: 27 PNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEAL 86
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E A++ K
Sbjct: 87 LNVITDLISKLSLLEERLRVAIKDK 111
>gi|241566022|ref|XP_002402072.1| RNA polymerases L, putative [Ixodes scapularis]
gi|215499963|gb|EEC09457.1| RNA polymerases L, putative [Ixodes scapularis]
gi|442757575|gb|JAA70946.1| Putative rna polymerase subunit l [Ixodes ricinus]
Length = 117
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P V FAGY VPHP + + +R+Q +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDSTPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F ++++ K
Sbjct: 88 TNAITDLISELSLLEERFKESVREK 112
>gi|408395904|gb|EKJ75076.1| hypothetical protein FPSE_04788 [Fusarium pseudograminearum CS3096]
Length = 127
Score = 52.0 bits (123), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V+F YS+PHP++ ++ IRIQ +G ++D LKKG+ +++ CD + + F
Sbjct: 62 PDVEFCAYSIPHPSEPKMNIRIQTYNG-TAVDALKKGLVDIQEVCDVVADEF 112
>gi|323452227|gb|EGB08102.1| hypothetical protein AURANDRAFT_26699 [Aureococcus anophagefferens]
Length = 118
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG-YDSIDI 162
PN TF KE HT G+++ + P+ FAGY +PHP + ++IQ I
Sbjct: 28 PNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLTPIGA 87
Query: 163 LKKGIKELESACDRITETFNDAMQCK 188
++ I++L+S D + F + + K
Sbjct: 88 FQRAIEDLQSEMDILDRNFREQVAKK 113
>gi|398394339|ref|XP_003850628.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
gi|339470507|gb|EGP85604.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
Length = 121
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G+++ L V FAGY VPHP Q +R+Q + +
Sbjct: 28 PNAAMFTFNKEDHTLGNLLRAKLAKAEHVLFAGYQVPHPLFAQFKLRVQTDGEVSPKEAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
+ KEL + + + F + K I
Sbjct: 88 VQACKELVAELQSLDQEFTKEWELKKI 114
>gi|443718702|gb|ELU09209.1| hypothetical protein CAPTEDRAFT_31867, partial [Capitella teleta]
Length = 51
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V+F GYSVPHP++ +I +RIQ K G ++ +L+KG+ +L+ + +TF
Sbjct: 1 PDVEFCGYSVPHPSETKINLRIQTK-GPSAMSVLEKGLNDLKKVSKHVLDTF 51
>gi|308162692|gb|EFO65073.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide [Giardia
lamblia P15]
Length = 100
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
TFV E HT G+ I + L P V FAGYSVPHPA+ ++ +RIQ
Sbjct: 7 TFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQ 51
>gi|413937790|gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 112
Score = 51.6 bits (122), Expect = 0.001, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +RI
Sbjct: 29 NAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYT 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ + + + F
Sbjct: 89 QAINDLDKELEYLKQAF 105
>gi|346974639|gb|EGY18091.1| DNA-directed RNA polymerase II [Verticillium dahliae VdLs.17]
Length = 151
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV +KE HT G++I+ L+ + V AGY +PHP ++FIR+Q D +
Sbjct: 54 NTSDFVIKKEDHTVGNLISEHLKMHQHVLMAGYKIPHPNVSEMFIRVQTDGTITPKDAVT 113
Query: 165 KGIKELESACDRITETF 181
+ IK+L + + F
Sbjct: 114 EVIKDLMKDFSHLAQEF 130
>gi|297819918|ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDYLKNQF 105
>gi|211971033|ref|NP_001130017.1| myeloid differentiation primary response protein MyD88 [Salmo
salar]
gi|292630829|sp|B3SRQ2.1|MYD88_SALSA RecName: Full=Myeloid differentiation primary response protein
MyD88
gi|157644541|gb|ABV59003.1| MyD88 [Salmo salar]
Length = 283
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 26/238 (10%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMD---IKAPPNPN 292
S+D IP+ A+ R+ L ++P N D+ +A+ M ++ +
Sbjct: 4 SLDLWNIPLRALNINVRKRLG-------LFLNPRNTVASDWMSVAENMGFSYLEIKNYED 56
Query: 293 CEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENT 350
C D +++ EDW + + L L+ +DR DV +D IEEDC Y
Sbjct: 57 CLDPTRRILEDWQARCPGAK----VGKLLSILDNVDRKDVVEDLRDLIEEDCRRYIERQN 112
Query: 351 RLGNSISKNGACM---DDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL 407
+ + +C+ + IT+ED G +DA + Y ++DFD + QL
Sbjct: 113 EPPLQVPEVDSCVPKTQERQGITLEDDPE---GGIPELFDAFICYCQSDFDFVHEMXQQL 169
Query: 408 NKMG--FTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 170 EQTDHKLKLCVFDRDVLPGSCVWTITSELIEKRCKRMVVVISDEYLDSDACDFQTKFA 227
>gi|407921830|gb|EKG14968.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 121
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT +++T L Y V FAGY VPHP +F +++ G D
Sbjct: 28 PNTAIFTFNKEDHTLANLLTARLHKYKYVSFAGYRVPHP----LFASFELRVGTDGTVAP 83
Query: 164 KKGI----KELESACDRITETFNDAMQCKVILK 192
K+ I +++ + + F M+ K I K
Sbjct: 84 KEAIVNACRDVVQDLEVFSREFTKEMELKKIAK 116
>gi|366992780|ref|XP_003676155.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
gi|342302021|emb|CCC69793.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
Length = 122
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRSELLNDSRVLFAAYKVEHPFFARFKLRIQTVEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|288558686|dbj|BAI68385.1| myeloid differentiation primary response gene 88 [Plecoglossus
altivelis altivelis]
gi|288558688|dbj|BAI68386.1| myeloid differentiation primary response gene 88 [Plecoglossus
altivelis altivelis]
Length = 287
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 26/238 (10%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMD---IKAPPNPN 292
S D IP+ A+ R+ L ++P N D+ +A++M ++ N
Sbjct: 8 SFDISNIPLVALNVNVRKKLG-------LFLNPRNTVAADWMSIAEIMGFSYLEITNYEN 60
Query: 293 CEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRL 352
C++ +K+ EDW ++ D V L LE DR DV +D IEEDC Y + +
Sbjct: 61 CQNPTRKILEDW-QARCPDAKV---GKLLSILEEADRKDVVEDLRELIEEDCRKYLSWQK 116
Query: 353 GNS--ISKNGACM---DDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL 407
+ + +C+ + S IT+ED G +DA + Y ++DF + QL
Sbjct: 117 EPPVQVPEVDSCVPRTPERSRITLEDDPD---GGMPELFDAFICYCQSDFTFVNEMIQQL 173
Query: 408 NKM--GFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S +++++ T++A
Sbjct: 174 EQTEHKLKLCVFDRDVLPGSCVWTITSELIEKRCKRMVVVISDNYLDSDACDFQTKFA 231
>gi|6324569|ref|NP_014638.1| Rpb11p [Saccharomyces cerevisiae S288c]
gi|730605|sp|P38902.1|RPB11_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=B13.6; AltName: Full=DNA-directed RNA polymerase II
13.6 kDa polypeptide
gi|14278332|pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278343|pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278373|pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
gi|20150721|pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749626|pdb|1NIK|K Chain K, Wild Type Rna Polymerase Ii
gi|30749747|pdb|1NT9|K Chain K, Complete 12-Subunit Rna Polymerase Ii
gi|34810563|pdb|1PQV|K Chain K, Rna Polymerase Ii-Tfiis Complex
gi|46015423|pdb|1R5U|K Chain K, Rna Polymerase Ii Tfiib Complex
gi|46015788|pdb|1SFO|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965919|pdb|1R9S|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965931|pdb|1R9T|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966115|pdb|1TWA|K Chain K, Rna Polymerase Ii Complexed With Atp
gi|56966129|pdb|1TWC|K Chain K, Rna Polymerase Ii Complexed With Gtp
gi|56966139|pdb|1TWF|K Chain K, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966149|pdb|1TWG|K Chain K, Rna Polymerase Ii Complexed With Ctp
gi|56966159|pdb|1TWH|K Chain K, Rna Polymerase Ii Complexed With 2'datp
gi|58177174|pdb|1WCM|K Chain K, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679454|pdb|1Y1W|K Chain K, Complete Rna Polymerase Ii Elongation Complex
gi|61679471|pdb|1Y77|K Chain K, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679512|pdb|1Y1V|K Chain K, Refined Rna Polymerase Ii-tfiis Complex
gi|61679525|pdb|1Y1Y|K Chain K, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754253|pdb|2B63|K Chain K, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590864|pdb|2B8K|K Chain K, 12-Subunit Rna Polymerase Ii
gi|122920069|pdb|2E2H|K Chain K, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920084|pdb|2E2I|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920099|pdb|2E2J|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921038|pdb|2NVQ|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921074|pdb|2NVT|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921090|pdb|2NVX|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921105|pdb|2NVY|K Chain K, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921117|pdb|2NVZ|K Chain K, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104684|pdb|2JA5|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104699|pdb|2JA6|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104720|pdb|2JA7|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104732|pdb|2JA7|W Chain W, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104744|pdb|2JA8|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387192|pdb|2YU9|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877783|pdb|2R7Z|K Chain K, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172237|pdb|2R92|K Chain K, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172250|pdb|2R93|K Chain K, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613472|pdb|2VUM|K Chain K, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368742|pdb|3CQZ|K Chain K, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983600|pdb|3FKI|K Chain K, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781924|pdb|3GTG|K Chain K, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781937|pdb|3GTJ|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781950|pdb|3GTK|K Chain K, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781963|pdb|3GTL|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781976|pdb|3GTM|K Chain K, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781990|pdb|3GTO|K Chain K, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782003|pdb|3GTP|K Chain K, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782016|pdb|3GTQ|K Chain K, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104521|pdb|3H3V|L Chain L, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839451|pdb|3HOU|K Chain K, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839466|pdb|3HOU|W Chain W, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839481|pdb|3HOV|K Chain K, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839496|pdb|3HOW|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839511|pdb|3HOX|K Chain K, Complete Rna Polymerase Ii Elongation Complex V
gi|254839526|pdb|3HOY|K Chain K, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839541|pdb|3HOZ|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471956|pdb|3I4M|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471971|pdb|3I4N|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618775|pdb|3K1F|K Chain K, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914560|pdb|3K7A|K Chain K, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982483|pdb|3M3Y|K Chain K, Rna Polymerase Ii Elongation Complex C
gi|295982496|pdb|3M4O|K Chain K, Rna Polymerase Ii Elongation Complex B
gi|325053973|pdb|3PO2|K Chain K, Arrested Rna Polymerase Ii Elongation Complex
gi|325053988|pdb|3PO3|K Chain K, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634548|pdb|3QT1|K Chain K, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197464|pdb|3RZD|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197476|pdb|3RZO|K Chain K, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197488|pdb|3S14|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197500|pdb|3S15|K Chain K, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197512|pdb|3S16|K Chain K, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197524|pdb|3S17|K Chain K, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197536|pdb|3S1M|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197548|pdb|3S1N|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197560|pdb|3S1Q|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197572|pdb|3S1R|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197584|pdb|3S2D|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781205|pdb|3S2H|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251643|pdb|3J0K|K Chain K, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380846|pdb|4A3C|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546300|pdb|4A3B|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546318|pdb|4A3D|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546335|pdb|4A3E|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546352|pdb|4A3F|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546369|pdb|4A3J|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546386|pdb|4A3K|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546402|pdb|4A3L|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546419|pdb|4A3M|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977889|pdb|4A3G|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977904|pdb|4A3I|K Chain K, Rna Polymerase Ii Binary Complex With Dna
gi|380764989|pdb|4A93|K Chain K, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145456|pdb|4BBR|K Chain K, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145469|pdb|4BBS|K Chain K, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|386198|gb|AAB27135.1| RNA polymerase II subunit RPB11 [Saccharomyces cerevisiae]
gi|1419769|emb|CAA99004.1| RPB11 [Saccharomyces cerevisiae]
gi|45269886|gb|AAS56324.1| YOL005C [Saccharomyces cerevisiae]
gi|151945625|gb|EDN63866.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190407337|gb|EDV10604.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273996|gb|EEU08912.1| Rpb11p [Saccharomyces cerevisiae JAY291]
gi|285814885|tpg|DAA10778.1| TPA: Rpb11p [Saccharomyces cerevisiae S288c]
gi|323303058|gb|EGA56861.1| Rpb11p [Saccharomyces cerevisiae FostersB]
gi|323307116|gb|EGA60399.1| Rpb11p [Saccharomyces cerevisiae FostersO]
gi|323331712|gb|EGA73126.1| Rpb11p [Saccharomyces cerevisiae AWRI796]
gi|323335698|gb|EGA76981.1| Rpb11p [Saccharomyces cerevisiae Vin13]
gi|323352374|gb|EGA84909.1| Rpb11p [Saccharomyces cerevisiae VL3]
gi|349581161|dbj|GAA26319.1| K7_Rpb11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763240|gb|EHN04770.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296328|gb|EIW07430.1| Rpb11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 120
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|70948405|ref|XP_743717.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|74976313|sp|Q4XS21.1|RPB11_PLACH RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56523351|emb|CAH80291.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + + + + ETF + +Q
Sbjct: 91 LSDNVHSILNQVSTLRETFANRVQ 114
>gi|15231127|ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|3219858|sp|Q38859.1|RPB11_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|881501|gb|AAB02849.1| RNA polymerase II 13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis thaliana]
gi|332645368|gb|AEE78889.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 116
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDYLKNQF 105
>gi|365758451|gb|EHN00292.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842527|gb|EJT44698.1| RPB11-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 122
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|328859791|gb|EGG08899.1| hypothetical protein MELLADRAFT_34668 [Melampsora larici-populina
98AG31]
Length = 159
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T KE HT G+++ L V FAGY VPHP + + I++Q + I +
Sbjct: 28 PNACTVTINKEDHTLGNMLRAQLLQMEYVIFAGYKVPHPLEPRFIIKVQTDGTHTPIQAI 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
++ +K L + D++ + + +
Sbjct: 88 QEAVKSLILSLDKMRNSLQNEFR 110
>gi|367017037|ref|XP_003683017.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
gi|359750680|emb|CCE93806.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
Length = 122
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRSELLNDTKVLFAAYKVEHPLFARFKMRIQTVEGYDPKDAL 87
Query: 164 K 164
K
Sbjct: 88 K 88
>gi|119196667|ref|XP_001248937.1| hypothetical protein CIMG_02708 [Coccidioides immitis RS]
Length = 99
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 85 QLENSSPVWELRDNTLNVKPNCR----TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVP 140
+LE E + V P +F FE E HT G+ + +I+ P+V+F GY++P
Sbjct: 19 ELEEEIHAAEFEKQRITVLPGASETAASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMP 78
Query: 141 HPADFQIFIRIQ 152
HP++ ++ +RIQ
Sbjct: 79 HPSETKMNLRIQ 90
>gi|401425126|ref|XP_003877048.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493292|emb|CBZ28577.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 137
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 111 FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
F E HT G+ + H+L V AGY++PHP + ++ + +Q D +++ + G++ L
Sbjct: 52 FSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQASDY--AVEAVAMGLERL 109
Query: 171 ESACDRITETFNDAM 185
CD +F++ M
Sbjct: 110 AEICDDTISSFDNCM 124
>gi|449464004|ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449516703|ref|XP_004165386.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDHLKNAF 105
>gi|224103945|ref|XP_002313254.1| predicted protein [Populus trichocarpa]
gi|118484276|gb|ABK94017.1| unknown [Populus trichocarpa]
gi|222849662|gb|EEE87209.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTVEREDHTIGNILRMQLHRDDNVLFAGYKLPHPLKYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDHLKNAF 105
>gi|225430537|ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera]
gi|296082163|emb|CBI21168.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I IRI +
Sbjct: 29 NAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDYLKNAF 105
>gi|449544553|gb|EMD35526.1| hypothetical protein CERSUDRAFT_116269 [Ceriporiopsis subvermispora
B]
Length = 141
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
E PV + D + PN T K+ HT G+++ L PEV FAGY VPHP
Sbjct: 14 EGEKPVEVIEDTKI---PNAATIKVVKQDHTLGNMLRAQLLQMPEVLFAGYKVPHPLQPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
I+IQ + LE AC ++ T + Q
Sbjct: 71 FLIKIQTDGSVTPAAV-------LEQACTKLIGTLSSLEQ 103
>gi|219119219|ref|XP_002180374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407847|gb|EEC47782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV--------KDGYD 158
RTF E HT G+ + H+L + FAGYSVPHP++ + IR+Q +
Sbjct: 3 RTFCIGDEDHTLGNAVRHVLIRNNSIGFAGYSVPHPSEPVVQIRVQTVAPAGSRGQQPPT 62
Query: 159 SIDILKKGIKELESACDRITETFND 183
+ LK + L CD + E +
Sbjct: 63 ATGALKTACQTLYDQCDIVLERLEE 87
>gi|427786191|gb|JAA58547.1| Putative rna polymerases l [Rhipicephalus pulchellus]
Length = 117
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT ++I L P V FAGY VPHP + + +R+Q +
Sbjct: 28 PNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDNTPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F +A++ K
Sbjct: 88 TNAITDLISELSLLEERFKEAVREK 112
>gi|346470095|gb|AEO34892.1| hypothetical protein [Amblyomma maculatum]
gi|346470103|gb|AEO34896.1| hypothetical protein [Amblyomma maculatum]
Length = 117
Score = 50.8 bits (120), Expect = 0.002, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT ++I L P V FAGY VPHP + + +R+Q +
Sbjct: 28 PNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDCTPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F +A++ K
Sbjct: 88 TNAITDLISELSLLEERFKEAVREK 112
>gi|259149481|emb|CAY86285.1| Rpb11p [Saccharomyces cerevisiae EC1118]
Length = 120
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +R+Q +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRVQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|146090865|ref|XP_001466380.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
gi|134070742|emb|CAM69097.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
Length = 134
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYDS 159
N N F EKE HT +++ L P V AGY VPHP + +R+Q +G D+
Sbjct: 34 NTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASNGTDA 93
Query: 160 -IDILKKGIKELESACDRITETFNDAMQCKVILK 192
+ KK +++ + C + E F + ++ + LK
Sbjct: 94 PVPAPKKALQDAINGCLKDLEVFEEQLRREAQLK 127
>gi|389593419|ref|XP_003721963.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
gi|321438465|emb|CBZ12222.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
Length = 134
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYDS 159
N N F EKE HT +++ L P V AGY VPHP + +R+Q +G D+
Sbjct: 34 NTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASNGTDA 93
Query: 160 -IDILKKGIKELESACDRITETFNDAMQCKVILK 192
+ KK +++ C + E F + ++ + LK
Sbjct: 94 PVPAPKKALQDAVDGCLKDLEVFEEQLRREAQLK 127
>gi|154339938|ref|XP_001565926.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063244|emb|CAM45446.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 134
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYDS 159
N N F EKE HT +++ L P V AGY VPHP + +R+Q +G D+
Sbjct: 34 NTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTGSNGTDT 93
Query: 160 -IDILKKGIKELESACDRITETFNDAMQCKVILK 192
I KK +++ C + E F + ++ + LK
Sbjct: 94 PIPAPKKALQDAIDGCLKDLEMFEEQLRREAQLK 127
>gi|323452880|gb|EGB08753.1| hypothetical protein AURANDRAFT_25751 [Aureococcus anophagefferens]
Length = 136
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS-IDI 162
PN TF KE HT G ++ + +V + GY +PHP + +++Q + + +
Sbjct: 28 PNAGTFTIAKETHTVGHLLQMQVLRNNQVRYCGYKMPHPLQNSMLVKVQTTTSKATPVAV 87
Query: 163 LKKGIKELESACDRITETFNDAMQCK 188
+ + EL+S C+ + +F DA+ K
Sbjct: 88 VGAALAELQSECEVLDRSFRDAVSEK 113
>gi|83286192|ref|XP_730053.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23489608|gb|EAA21618.1| RNA polymerases L / 13 to 16 kDa subunit, putative [Plasmodium
yoelii yoelii]
Length = 117
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP +I I I+ K GY + +
Sbjct: 8 KGDCNIFTIKLEDHTLGNLIKQSLCQDPKVTFAAYRQPHPLQNEIEITIRPK-GYAGVKL 66
Query: 163 LKKGIKELESACDRITETF 181
L + + + + ETF
Sbjct: 67 LSDNVHTILNQVSTLRETF 85
>gi|449018281|dbj|BAM81683.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 133
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG-YDSIDI 162
PNC +FV E+E HT + + L V FA Y VPHP + + +++Q + Y ++
Sbjct: 31 PNCASFVIEREDHTLANALRAQLLRDRNVLFAAYRVPHPLEHHVILKVQTRRSEYTPLEA 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + L++ + + F + +Q
Sbjct: 91 LCAALVALKNEIHVLEDEFANELQ 114
>gi|169851088|ref|XP_001832235.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
gi|116506713|gb|EAU89608.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
Length = 144
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ PV + D+ + PN T K+ HT G+++ L + PEV FAGY VPHP
Sbjct: 14 DGEKPVEVIEDSKI---PNAATIKVVKQDHTLGNMLRSQLLAMPEVLFAGYKVPHPLHPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
+++Q DG I + +E+AC ++ T N Q
Sbjct: 71 FIVKVQT-DG----SITPQA--AVEAACTKLIATINTVAQ 103
>gi|302783907|ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
gi|302788013|ref|XP_002975776.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300156777|gb|EFJ23405.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300158764|gb|EFJ25386.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
Length = 117
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F ++E HT G+V+ L P V FAGY +PHP ++I +++Q I
Sbjct: 29 NAGAFTIQREDHTVGNVVRMQLHRDPNVLFAGYKLPHPLQYKIIVKVQTTSQSSPIQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ +L+ + + F
Sbjct: 89 LALSDLDKELEHLKRAF 105
>gi|328869614|gb|EGG17991.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1128
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV 153
PN F KE HT G++I L P+V FAGY +PHP + I I+IQ
Sbjct: 28 PNACMFTILKEDHTLGNLIRMQLVGDPDVKFAGYRMPHPLEHNITIKIQT 77
>gi|124512838|ref|XP_001349775.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|74843039|sp|Q8IER7.1|RPB11_PLAF7 RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|23615192|emb|CAD52182.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
T++ K +C FV + E HT G++I L P+V FA Y PHP I I I+ K GY
Sbjct: 28 TISDKGDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPK-GYA 86
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
+ +L + + S + E F +Q
Sbjct: 87 GVKLLSDNVNNILSQVATLKENFAKKIQ 114
>gi|440465860|gb|ELQ35160.1| hypothetical protein OOU_Y34scaffold00725g18 [Magnaporthe oryzae
Y34]
gi|440486473|gb|ELQ66334.1| hypothetical protein OOW_P131scaffold00400g21 [Magnaporthe oryzae
P131]
Length = 170
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
N F F+KE HT G+++T L+ +P V AGY V HP + F+RIQ DG
Sbjct: 69 NTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQT-DG 119
>gi|126137858|ref|XP_001385452.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
gi|126092730|gb|ABN67423.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
Length = 122
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 38/88 (43%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L P V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIIKIEREDHTLANLLRAQLLKDPRVLFAAYKVEHPLFANFVLRIQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
K L S D I F D K +L
Sbjct: 88 KNACSGLISELDVIKNRFKDEWALKSLL 115
>gi|451848796|gb|EMD62101.1| hypothetical protein COCSADRAFT_38897 [Cochliobolus sativus ND90Pr]
Length = 130
Score = 50.1 bits (118), Expect = 0.003, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G++++ L P V FA Y VPHP +R+Q + +
Sbjct: 28 PNTAVFTFNKEDHTLGNLLSQRLLKNPAVMFAAYKVPHPLFATFELRVQTDGSITPKEAV 87
Query: 164 KKGIKELESACDRITETF 181
K +E+ + ++ ++F
Sbjct: 88 MKTCREVIADLSKLNDSF 105
>gi|398017622|ref|XP_003861998.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
gi|401424491|ref|XP_003876731.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492974|emb|CBZ28256.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500226|emb|CBZ35303.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
Length = 134
Score = 50.1 bits (118), Expect = 0.004, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 101 NVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYDS 159
N N F EKE HT +++ L P V AGY VPHP + +R+Q +G D+
Sbjct: 34 NTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASNGTDA 93
Query: 160 -IDILKKGIKELESACDRITETFNDAMQCKVILK 192
+ KK +++ C + E F + ++ + LK
Sbjct: 94 PVPAPKKALQDAIDGCLKDLEVFEEQLRREAQLK 127
>gi|449019035|dbj|BAM82437.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 117
Score = 50.1 bits (118), Expect = 0.004, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 81 MESKQLENSSP-----VWELRDNTLNVKPNC-RT---FVFEKEGHTFGSVITHILQSYPE 131
M S N SP EL ++++ N RT EGHT G+ + ++L P
Sbjct: 1 MTSAAAGNHSPHSGDASLELDGKDVHIQENADRTELVLTLRGEGHTLGNALRYMLTREPG 60
Query: 132 VDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
V GY++PHP++ + + + K G ++D +K + L CD + E + +A
Sbjct: 61 VQQVGYTIPHPSEDCLKLYVVSKPGSRALDSVKLALFHLTQLCDIVGEKYEEA 113
>gi|298713624|emb|CBJ33676.1| RNA polymerase II core subunit [Ectocarpus siliculosus]
Length = 170
Score = 50.1 bits (118), Expect = 0.004, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ TF KE HT G+++ L + +V FAGY PHP + +I I++Q +D L
Sbjct: 75 PHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDAL 134
Query: 164 KKGIKELESACDRITETFND 183
++L + + E F +
Sbjct: 135 SAATEDLSQEMEGLREVFQE 154
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF F E HT G + + + V F GY VPHP + I IQ+K G +ID L+ G+
Sbjct: 404 TFTFFGEDHTLGLALRYCILRDESVSFCGYCVPHPLEDMINFDIQMKKG-SAIDALRNGL 462
Query: 168 KELESACDRITETFNDAMQ 186
+ L + TF AM+
Sbjct: 463 QCLRDCFQHMKHTFISAMK 481
>gi|390340219|ref|XP_780663.2| PREDICTED: myeloid differentiation primary response protein MyD88
[Strongylocentrotus purpuratus]
Length = 296
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 295 DLMKKMFEDW-TKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRL- 352
D + K+ W TK + N+ L +E I+R DV + F+EEDC ++ T+
Sbjct: 72 DPVAKVLSAWCTKPGS------NVGKLLDIIEKIERHDVLHELPAFLEEDCKRWKRTQAE 125
Query: 353 -----------GNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAK 401
GN S D+ IT+ D S +DA + + AD + +
Sbjct: 126 ARDPIQVPEVTGNFASSTS---DELRGITLNDSPS----GPPEMFDAYVCFAMADLEFVQ 178
Query: 402 QFNTQLNKM--GFTVCDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSL 458
Q +QL + +C L G +++ +RC ++V++S F+ +
Sbjct: 179 QLRSQLESKPHNYKLCIDQRDLLPGGSHALVTAEIIKNRCNKMLVILSPEFLQSPSCDFQ 238
Query: 459 TQYAEAKHIDHTIHSKIIPIL 479
T++A + + +IIPIL
Sbjct: 239 TKFAVSLE-PGAMKRRIIPIL 258
>gi|46124881|ref|XP_386994.1| hypothetical protein FG06818.1 [Gibberella zeae PH-1]
Length = 239
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 60 CFCFSIPTSTSSVNTSLCINYMESKQL----ENSSPVWELRDNTLNVKPNCRTFVFEKEG 115
CF S P S ++ S N + S +L E ++ + + N FV KE
Sbjct: 95 CFLHSKPHFKSGLHQSSFANILNSFELFLLGEGEK---KIEEKVFSGMSNTSDFVLMKED 151
Query: 116 HTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACD 175
HT G++++ L+ +P V AGY + HP ++FIR+Q D+ ++L + +
Sbjct: 152 HTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQTDGTITPRDVFTSVCEKLINQLE 211
Query: 176 RITETFNDAMQCKVI 190
+ + F + + I
Sbjct: 212 MLHQEFTREWELRRI 226
>gi|68072823|ref|XP_678325.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|74991219|sp|Q4YZZ7.1|RPB11_PLABA RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56498758|emb|CAH96395.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 126
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + + + + ETF + +Q
Sbjct: 91 LSDNVHTILNQVSTLRETFVNKVQ 114
>gi|403223457|dbj|BAM41588.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 116
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
P C TF+ E HTFGS+I L V F GY +PHP + ++ IR++ K
Sbjct: 35 PLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRIPHPLENKLEIRLRTK 85
>gi|154340595|ref|XP_001566254.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063573|emb|CAM39755.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 137
Score = 49.7 bits (117), Expect = 0.005, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 111 FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
F E HT G+ + H+L V AGY++PHP + ++ + +Q D +++ + G++ L
Sbjct: 52 FSHEDHTLGNPLRHVLMQNVAVTSAGYAIPHPLEPKMLLHVQASDY--AVEAVAHGLERL 109
Query: 171 ESACDRITETFNDAM 185
CD +F+ M
Sbjct: 110 AEICDDTISSFDKCM 124
>gi|451998617|gb|EMD91081.1| hypothetical protein COCHEDRAFT_1103438, partial [Cochliobolus
heterostrophus C5]
Length = 125
Score = 49.7 bits (117), Expect = 0.005, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G++++ L P + FA Y VPHP +R+Q + +
Sbjct: 23 PNTAVFTFNKEDHTLGNLLSQRLLKNPAIMFAAYKVPHPLFATFELRVQTDGSITPKEAV 82
Query: 164 KKGIKELESACDRITETF 181
K +E+ + ++ ++F
Sbjct: 83 MKTCREVIADLSKLNDSF 100
>gi|392589040|gb|EIW78371.1| RBP11-like subunits of RNA polymerase, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 133
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF K+ HT G++I + S P+V FAGY VPHP ++IQ DG +
Sbjct: 28 PNAATFKIVKQDHTLGNMIRAQVLSMPQVLFAGYKVPHPLQPYFLLKIQT-DGSLTPQ-- 84
Query: 164 KKGIKELESACDRITETFN 182
LE AC ++ T +
Sbjct: 85 ----AALEQACTKLISTIS 99
>gi|158828223|gb|ABW81101.1| RNApol24 [Cleome spinosa]
Length = 109
Score = 49.7 bits (117), Expect = 0.005, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +E HT + + +L P V F GYS+PHP+ ++ IR+Q G + ++LK
Sbjct: 13 TFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTT-GDPAREVLKDAC 71
Query: 168 KELESACDRITETFNDAM 185
++L + F++A+
Sbjct: 72 QDLMLMNRHVRGVFDNAV 89
>gi|50286733|ref|XP_445796.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525102|emb|CAG58715.1| unnamed protein product [Candida glabrata]
Length = 120
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDAL 87
Query: 164 K 164
+
Sbjct: 88 R 88
>gi|389623207|ref|XP_003709257.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
gi|351648786|gb|EHA56645.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
Length = 130
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
N F F+KE HT G+++T L+ +P V AGY V HP + F+RIQ
Sbjct: 29 NTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQ 76
>gi|255712823|ref|XP_002552694.1| KLTH0C10934p [Lachancea thermotolerans]
gi|238934073|emb|CAR22256.1| KLTH0C10934p [Lachancea thermotolerans CBS 6340]
Length = 122
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 36/78 (46%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT ++I L V FA Y V HP Q +RIQ +GYD D L
Sbjct: 28 PNAVIVTFEKEDHTLANLIRGELLEDKGVLFAAYKVEHPLFAQFKLRIQTVEGYDPKDAL 87
Query: 164 KKGIKELESACDRITETF 181
K + S ++ F
Sbjct: 88 KNACNGIISKLGQLQSNF 105
>gi|413920766|gb|AFW60698.1| hypothetical protein ZEAMMB73_622044 [Zea mays]
Length = 106
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT + +L P V F GY++PHP++ ++ IR+Q G + D+LK +
Sbjct: 13 TFSIMDEDHTLANSARFVLNQDPRVAFCGYTIPHPSEKKVNIRLQTT-GDAAKDVLKDAL 71
Query: 168 KELESACDRITETFNDAM 185
+ L C + T + A+
Sbjct: 72 QNLMIMCQHVRGTMDTAV 89
>gi|82540957|ref|XP_724755.1| RNA polymerase L [Plasmodium yoelii yoelii 17XNL]
gi|23479513|gb|EAA16320.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii yoelii]
Length = 92
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
TF FE E HT G+ + IL ++FAGY+VPHP +I +RIQ +I I
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGSQKNIFI 71
>gi|330929492|ref|XP_003302661.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
gi|311321850|gb|EFQ89261.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
Length = 151
Score = 49.3 bits (116), Expect = 0.007, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G++++ LQ P + FA Y VPHP +R+Q + +
Sbjct: 49 PNTAVFTFNKEDHTLGNLLSARLQKNPAILFAAYKVPHPLFATFELRVQTDGSITPKEAV 108
Query: 164 KKGIKELESACDRITETF 181
+ E+ + ++ ++F
Sbjct: 109 IRTCTEVITELSKLNDSF 126
>gi|209731212|gb|ACI66475.1| DNA-directed RNA polymerase II subunit RPB11 [Salmo salar]
Length = 128
Score = 49.3 bits (116), Expect = 0.007, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS----- 159
N FV KE HT G+++ L+++P V AGY + HP Q+FIR+Q DG +
Sbjct: 29 NTSDFVLNKEDHTLGNLLAEHLKAHPNVYMAGYKLGHPNVPQLFIRLQT-DGTKTPRDVF 87
Query: 160 IDILKKGIKELES 172
+ +K I +LES
Sbjct: 88 TSVCEKLINQLES 100
>gi|281203019|gb|EFA77220.1| hypothetical protein PPL_12430 [Polysphondylium pallidum PN500]
Length = 1177
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P++ FAGY +PHP + I I+IQ I L
Sbjct: 45 PNACLFTILKEDHTVGNLIRMQLVGDPDIKFAGYRMPHPLEHNIAIKIQTYPHSTPIQAL 104
Query: 164 KKGIKELESACDRITETFND 183
+ I L +I F D
Sbjct: 105 EGSIHCLIDEFQKIELQFMD 124
>gi|400596490|gb|EJP64261.1| DNA-directed RNA polymerase 13.3K chain [Beauveria bassiana ARSEF
2860]
Length = 128
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G++++ L+ +P V AGY + HP ++FIR+Q S D+
Sbjct: 29 NTSDFLLKKEDHTLGNLLSEHLKLHPNVLMAGYKLGHPNVPELFIRVQTDGTVTSRDVFT 88
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 89 SVCEKLINQLEMLHQKFTREWELRRI 114
>gi|254570701|ref|XP_002492460.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|238032258|emb|CAY70274.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|328353526|emb|CCA39924.1| DNA-directed RNA polymerase II subunit J [Komagataella pastoris CBS
7435]
Length = 118
Score = 49.3 bits (116), Expect = 0.007, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PNC FE+E HT +++ L YP+V F Y V HP +R+Q ++G L
Sbjct: 28 PNCIIIKFEREDHTLANLLREELALYPDVTFVAYKVEHPLFANFVMRLQTEEGTRPKQAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
++ + + + FN+ K
Sbjct: 88 ERACASIINKLKTLDHKFNEEWNIK 112
>gi|358392256|gb|EHK41660.1| hypothetical protein TRIATDRAFT_302116 [Trichoderma atroviride IMI
206040]
Length = 128
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV +KE HT G+++ L+++P V AGY + HP +++IR+Q D+
Sbjct: 29 NTSDFVLKKEDHTLGNLLAEHLKAHPNVYMAGYKIAHPNVPELYIRVQTDGTISPRDVFT 88
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 89 SVCEKLINQLEMLYQEFTREWELRRI 114
>gi|72011756|ref|XP_780590.1| PREDICTED: myeloid differentiation primary response protein
MyD88-like [Strongylocentrotus purpuratus]
Length = 367
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 42/243 (17%)
Query: 295 DLMKKMFEDW-TKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRL- 352
D + K+ W TK + N+ L +E I+R DV + F+EEDC ++ T+
Sbjct: 143 DPVAKVLSAWCTKPGS------NVGKLLDIIEKIERHDVLHELPAFLEEDCKRWKRTQAE 196
Query: 353 -----------GNSISKNGACMDDPSVITIEDVKSLNLGCGLAH-YDALLLYDEADFDLA 400
GN S DD IT+ D S G +DA + + AD +
Sbjct: 197 ARDPIQVPEVTGNFASSTS---DDLRGITLNDSPS-----GPPEMFDAYVCFAMADLEFV 248
Query: 401 KQFNTQLNK--MGFTVCDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHS 457
+Q +QL + +C L G +++ +RC ++V++S F+ +
Sbjct: 249 QQLRSQLESEPHNYKLCIDQRDLLPGGSHALVTAEIIKNRCNKMLVILSPEFLQSPSCDF 308
Query: 458 LTQYAEAKHIDHTIHSKIIPILCS--DDYFSVGFLQYC--VKLKLNHYASNMEQFWDRLY 513
T++A + +IIPIL D + + C K L + WDRL
Sbjct: 309 QTKFAVSLE-PGARKRRIIPILVKPCDLPLIIRHITLCDFTKQDLRPW------LWDRLR 361
Query: 514 YSL 516
++
Sbjct: 362 KAM 364
>gi|336364500|gb|EGN92857.1| hypothetical protein SERLA73DRAFT_190428 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388546|gb|EGO29690.1| hypothetical protein SERLADRAFT_457791 [Serpula lacrymans var.
lacrymans S7.9]
Length = 142
Score = 48.9 bits (115), Expect = 0.008, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN TF K+ HT G+++ + + P+V FAGY VPHP ++IQ DG + ++
Sbjct: 28 PNAATFKIMKQDHTLGNMVRAYVLAMPQVLFAGYKVPHPLHPYFLLKIQT-DGTVTPQVV 86
Query: 164 KKGIKELESACDRI 177
LE AC ++
Sbjct: 87 ------LEQACTKL 94
>gi|71026805|ref|XP_763046.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68349999|gb|EAN30763.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 133
Score = 48.9 bits (115), Expect = 0.008, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
P C TF+ E HTFGS+I L V F GY +PHP + ++ IRI+ K
Sbjct: 35 PLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRMPHPLENKLEIRIRTK 85
>gi|346325285|gb|EGX94882.1| DNA-directed RNA polymerase II subunit RPB11a, putative [Cordyceps
militaris CM01]
Length = 134
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G +++ L+ +P V AGY + HP ++FIR+Q S D+
Sbjct: 35 NTSDFLLKKEDHTLGHLLSEHLKMHPNVLMAGYKLGHPNVPELFIRVQTDGTVTSRDVFT 94
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 95 AVCEKLINQLEMLHQKFTREWELRRI 120
>gi|85000057|ref|XP_954747.1| DNA-directed RNA polymerase II [Theileria annulata strain Ankara]
gi|65302893|emb|CAI75271.1| DNA-directed RNA polymerase II, putative [Theileria annulata]
Length = 124
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
P C TF+ E HTFGS+I L V F GY +PHP + ++ IRI+ K
Sbjct: 35 PLCGTFIVHLEDHTFGSLIRTKLSKDDRVTFVGYRMPHPLENKLEIRIRTK 85
>gi|302678017|ref|XP_003028691.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune H4-8]
gi|300102380|gb|EFI93788.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune H4-8]
Length = 112
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ E HT G+ + ++ P V+F GYS PHP++ I +RIQ+ D S+D L K +
Sbjct: 23 TYQIYDESHTLGNALRWMIMKNPNVEFCGYSAPHPSENVINVRIQMYDNLSSLDALLKAL 82
Query: 168 KELESACDRITETFNDAMQ 186
+L+ C I + + +++
Sbjct: 83 DDLDDVCKTIDDAYKTSLK 101
>gi|323346625|gb|EGA80911.1| Rpb11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 120
Score = 48.9 bits (115), Expect = 0.008, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +R Q +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRXQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|224007319|ref|XP_002292619.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 124
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG-YDSIDIL 163
N TF F KE HT +++ L P V FAGY PHP +I ++IQ + L
Sbjct: 29 NAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETL 88
Query: 164 KKGIKELESACDRITETFNDAM 185
I++L + D + DA+
Sbjct: 89 SAAIEDLSNETDHLLTQVTDAI 110
>gi|342878460|gb|EGU79797.1| hypothetical protein FOXB_09656 [Fusarium oxysporum Fo5176]
Length = 136
Score = 48.9 bits (115), Expect = 0.009, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL- 163
N FV KE HT G++++ L+ +P V AGY + HP ++FIR+Q D+
Sbjct: 38 NTSDFVLMKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQTDGTITPRDVFT 97
Query: 164 ---KKGIKELE 171
+K IK+LE
Sbjct: 98 SVCEKLIKQLE 108
>gi|159490407|ref|XP_001703168.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
gi|158270708|gb|EDO96544.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
Length = 99
Score = 48.9 bits (115), Expect = 0.009, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E+E HT + + L P V F GYS+PHP++ + +R+Q + +K
Sbjct: 12 TFSIEEEDHTLANSLRFFLNKNPHVAFCGYSMPHPSEELVNLRVQTTGA--ARGAVKAAC 69
Query: 168 KELESACDRITETFNDAMQ 186
+++ C + T DA+
Sbjct: 70 EDVSQVCGHMRSTLQDAVH 88
>gi|413937810|gb|AFW72361.1| hypothetical protein ZEAMMB73_595234 [Zea mays]
Length = 208
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L P V FAGY +PHP ++I +R + +I+ L
Sbjct: 133 NAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRAYTQ----AINDLD 188
Query: 165 KGIKELESACDRI 177
K ++ L+ A +++
Sbjct: 189 KELEYLKQAFEQM 201
>gi|403223937|dbj|BAM42067.1| RNA polymerases I and III subunit [Theileria orientalis strain
Shintoku]
Length = 981
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKD 155
PN TF E E HT G+ + +L +V FAGYSVPHP + ++ +RIQ +
Sbjct: 9 PNI-TFSIENEDHTLGNTLRAVLVERDDVIFAGYSVPHPMEPEMNVRIQTTE 59
>gi|162605706|ref|XP_001713368.1| dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
gi|13794300|gb|AAK39677.1|AF083031_34 dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
Length = 108
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N + F+FE E T G ++ + L+++ V F GY HP D IF++I+ D + L+
Sbjct: 28 NTKEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVLELE 87
Query: 165 KGIKEL 170
IKE+
Sbjct: 88 WAIKEI 93
>gi|395862822|ref|XP_003803624.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-b1-like [Otolemur garnettii]
Length = 154
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVD----FAGYSVPHPADFQIFIRIQVKDGYD 158
+PN F KE HT G++I P+ D FAGY +PHP + +I I +Q Y
Sbjct: 49 EPNACLFTINKEDHTLGNIIKSASLXDPKSDTXLLFAGYKIPHPLEHKINIXVQTTPDYS 108
Query: 159 SIDILKKGIKELESACDRITETFNDAM 185
+ I +L + ++ E F +
Sbjct: 109 LQEAFTSAITDLINELSQLEERFQSCL 135
>gi|426195387|gb|EKV45317.1| hypothetical protein AGABI2DRAFT_194279 [Agaricus bisporus var.
bisporus H97]
Length = 148
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ PV + D+ + PN T K+ HT G+++ L S P++ FAGY VPHP
Sbjct: 14 DGEKPVEVVEDSKI---PNAATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFN 182
I+IQ DG + L LE AC ++ T +
Sbjct: 71 FLIKIQT-DGTITPQEL------LEQACTKLIGTMS 99
>gi|409077044|gb|EKM77412.1| hypothetical protein AGABI1DRAFT_115317 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 148
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ PV + D+ + PN T K+ HT G+++ L S P++ FAGY VPHP
Sbjct: 14 DGEKPVEVVEDSKI---PNAATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFN 182
I+IQ DG + L LE AC ++ T +
Sbjct: 71 FLIKIQT-DGTITPQEL------LEQACTKLIGTMS 99
>gi|302911227|ref|XP_003050446.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
gi|256731383|gb|EEU44733.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
Length = 136
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV +KE HT G++++ L+ +P V AGY + HP ++FIR+Q D+
Sbjct: 38 NTSDFVLKKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQTDGTITPRDVFT 97
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 98 SVCEKLINQLEMLHQEFTREWELRRI 123
>gi|344304502|gb|EGW34734.1| RNA polymerase II core subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 122
Score = 48.5 bits (114), Expect = 0.009, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ + L +V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIIKIEREDHTLANLLRNQLLKDEKVIFAAYKVEHPLFANFVLRIQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
K L S D I FN K +L
Sbjct: 88 KNACSGLISELDAIKSRFNAEWALKALL 115
>gi|342320371|gb|EGU12312.1| DNA-directed RNA polymerase II [Rhodotorula glutinis ATCC 204091]
Length = 130
Score = 48.5 bits (114), Expect = 0.010, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T KE HT +++ L +P V FAGY VPHP + ++ +++Q + +
Sbjct: 28 PNAATLTINKEDHTLANMLRSQLLLFPYVQFAGYKVPHPLEPRVVLKVQTDGSRTPLVAV 87
Query: 164 KKGIKEL 170
++ I L
Sbjct: 88 QEAINTL 94
>gi|241948087|ref|XP_002416766.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
gi|223640104|emb|CAX44350.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
Length = 124
Score = 48.5 bits (114), Expect = 0.010, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 39/91 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L V FA Y V HP +R+Q +D Y + L
Sbjct: 28 PNAAIVKIEREDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRVQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKLT 194
+ L S D I FND K +L T
Sbjct: 88 QNACSSLISELDVIKSKFNDEWALKALLNNT 118
>gi|170289751|ref|YP_001736567.1| DNA-directed RNA polymerase subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
gi|229564219|sp|B1L7Q7.1|RPOL_KORCO RecName: Full=DNA-directed RNA polymerase subunit L
gi|170173831|gb|ACB06884.1| DNA-directed RNA polymerase, subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 98
Score = 48.5 bits (114), Expect = 0.010, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT S + L S EV+FAGY VPHP + + ++VK+G + ++LK I+ L
Sbjct: 20 ETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLKGAIRRLMEK 79
Query: 174 CDRITETF 181
+ I +F
Sbjct: 80 YEIIGNSF 87
>gi|452837613|gb|EME39555.1| hypothetical protein DOTSEDRAFT_75275 [Dothistroma septosporum
NZE10]
Length = 121
Score = 48.5 bits (114), Expect = 0.010, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 38/87 (43%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G+++ L V FAGY VPHP +R+Q + +
Sbjct: 28 PNAAMFTFNKEDHTLGNLLRAKLVKSDHVLFAGYQVPHPLFATFKLRVQTDGVIQPKEAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
KEL S + + F + K I
Sbjct: 88 VTACKELVSELQQFDQEFTKEFELKKI 114
>gi|428671107|gb|EKX72026.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 122
Score = 48.5 bits (114), Expect = 0.010, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
P C TF+ E HTFG++I L V F GY +PHP + ++ IR++ K
Sbjct: 35 PLCGTFIVHLEDHTFGALIRSRLSRDERVTFVGYRIPHPLENKLEIRLRTK 85
>gi|380474439|emb|CCF45777.1| hypothetical protein CH063_03693 [Colletotrichum higginsianum]
Length = 125
Score = 48.5 bits (114), Expect = 0.011, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV +KE HT G++++ L+++ V AGY + HP ++FIR+Q + + L
Sbjct: 29 NTSDFVIKKEDHTLGNLLSEHLKAHKNVLMAGYKIAHPNVPEMFIRVQTDGSITAKEALV 88
Query: 165 KGIKELESACDRITETFNDAMQCKVILK 192
+ IK+L ++ F + + +++
Sbjct: 89 QVIKKLMQDLSHLSREFTREFELRRMVE 116
>gi|324515757|gb|ADY46304.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Ascaris suum]
Length = 119
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIF 148
L L P T + +E HT G+ + HIL EV+F GY+VPHP + +IF
Sbjct: 16 LNPEALQKDPTNLTVILHEEDHTIGNSLKHILCKMAEVEFCGYNVPHPLEDKIF 69
>gi|238879406|gb|EEQ43044.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Candida
albicans WO-1]
Length = 124
Score = 48.5 bits (114), Expect = 0.011, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 39/91 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIVKIEREDHTLANLLRAQLLKDDRVLFAAYKVEHPLFANFVLRIQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKLT 194
+ L S D I FND K +L T
Sbjct: 88 QNACSGLISELDVIKSKFNDEWALKALLNNT 118
>gi|156844441|ref|XP_001645283.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156115943|gb|EDO17425.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 120
Score = 48.5 bits (114), Expect = 0.011, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ + YD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRSELLNDSKVLFAAYKVEHPLFARFKLRIQTVENYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNNI 94
>gi|340504627|gb|EGR31054.1| DNA-directed polymerase II polypeptide J, putative
[Ichthyophthirius multifiliis]
Length = 125
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ-VKDG 156
N +T + E HT G++I L EV FAGY +PHP + ++ I++Q VKD
Sbjct: 38 NSKTIIMNLEDHTIGNLIRMYLLKSKEVKFAGYRMPHPLETKVEIKVQTVKDN 90
>gi|50551669|ref|XP_503309.1| YALI0D26301p [Yarrowia lipolytica]
gi|49649177|emb|CAG81515.1| YALI0D26301p [Yarrowia lipolytica CLIB122]
Length = 117
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PNC FEKE HT G+++ L V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNCANIKFEKEDHTLGNLLRSQLLHDSRVIFAAYKVEHPLFANFVLRIQTEDDYSPQEAL 87
Query: 164 KKGIKELESACDRITETF 181
L + E F
Sbjct: 88 TNACNALIRQLSDLQEKF 105
>gi|403216456|emb|CCK70953.1| hypothetical protein KNAG_0F02910 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAIVITFNKEDHTLGNLIRAELLNDSKVLFAAYKVEHPFFARFKLRIQTVEGYDPKDAL 87
Query: 164 K 164
K
Sbjct: 88 K 88
>gi|322704990|gb|EFY96579.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS----- 159
N F+ KE HT G++++ ++++P V AGY + HP Q+FIR+Q DG +
Sbjct: 29 NTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQT-DGTKTPREVF 87
Query: 160 IDILKKGIKELES 172
+ +K I +LES
Sbjct: 88 TAVCEKLINQLES 100
>gi|322696273|gb|EFY88068.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium acridum
CQMa 102]
Length = 128
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS----- 159
N F+ KE HT G++++ ++++P V AGY + HP Q+FIR+Q DG +
Sbjct: 29 NTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQT-DGTKTPREVF 87
Query: 160 IDILKKGIKELES 172
+ +K I +LES
Sbjct: 88 TAVCEKLINQLES 100
>gi|320168334|gb|EFW45233.1| RNA polymerase II subunit [Capsaspora owczarzaki ATCC 30864]
Length = 121
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ KE HT G+++ L P+V F+GY VPHP + +R+ +GY I+ +
Sbjct: 28 PSAAVITVNKEDHTLGNLLRVQLLRDPKVLFSGYHVPHPLQSKFVLRVLTVEGYSPIEAV 87
Query: 164 KKGIKELESACDRITETF 181
+L S + E F
Sbjct: 88 SGAFNDLISEMSLLEERF 105
>gi|350537537|ref|NP_001232053.1| putative RNA polymerase I 16 kDa polypeptide [Taeniopygia guttata]
gi|197127136|gb|ACH43634.1| putative RNA polymerase I 16 kDa polypeptide [Taeniopygia guttata]
Length = 73
Score = 48.5 bits (114), Expect = 0.012, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
P+V+F GY + HP++ +I RIQ + +++ +KG+ +L C + TF +M+
Sbjct: 6 PDVEFCGYCITHPSESKINFRIQTRGALPAVEPFRKGLNDLMGVCQHVLNTFERSMK 62
>gi|340522866|gb|EGR53099.1| predicted protein [Trichoderma reesei QM6a]
Length = 128
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G++++ L+++P V AGY + HP +++IR+Q D+
Sbjct: 29 NTSDFLLKKEDHTLGNLLSEHLKAHPNVYMAGYKIAHPNVPELYIRVQTDGTISPRDVFT 88
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 89 SVCEKLINQLEMLYQEFTREWELRRI 114
>gi|169601826|ref|XP_001794335.1| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
gi|160706019|gb|EAT88994.2| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
Length = 203
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP--ADFQIFI 149
TL V PN F F KE HT G++I+ L YP + F+ Y VPHP A F++ +
Sbjct: 97 TLGV-PNTGIFTFNKEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFELRV 148
>gi|410074997|ref|XP_003955081.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
gi|372461663|emb|CCF55946.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
Length = 122
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +R+Q +GYD + L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDTKVLFAAYKVEHPFFARFKLRVQTIEGYDPKEAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>gi|453082047|gb|EMF10095.1| RBP11-like subunits of RNA polymerase [Mycosphaerella populorum
SO2202]
Length = 121
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G+++ L V FAGY VPHP +R+Q + +
Sbjct: 28 PNASMFTFNKEDHTLGNLLRAKLAKADHVLFAGYQVPHPLFATFKLRVQTDGEITPKEAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
++L ++ + F M+ K I
Sbjct: 88 VNACQDLVKELGQLDQEFTKEMELKKI 114
>gi|313229045|emb|CBY18197.1| unnamed protein product [Oikopleura dioica]
Length = 119
Score = 48.1 bits (113), Expect = 0.013, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ F KE HT G+++ L P+V FAGY PHP + ++ IR+Q Y D
Sbjct: 28 PDACLFTLNKEDHTLGNILKTQLLRDPKVLFAGYKNPHPLENKVIIRVQTTKDYTPQDAF 87
Query: 164 KKGIKE 169
I +
Sbjct: 88 TNAITD 93
>gi|405957683|gb|EKC23877.1| Toll-like receptor 13 [Crassostrea gigas]
Length = 225
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 386 YDALLLYDEADFDLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLM 445
+DA + Y E D+ F L +GF + D FL G E ++ MD+ V++++
Sbjct: 86 FDAFVTYTEEDYPACIPFYQALTSLGFKISIPDKDFLPGISEAEQLLKCMDQSRKVVIIV 145
Query: 446 STHFMNNSLLHSLTQYAEAKHIDHTIHS---KIIPILCSDDY------FSVGFLQY-CVK 495
+ +F+ N YA + H H+ + I ++ DD + ++ + V
Sbjct: 146 TENFLEN----GWNSYAVQMVVTHAFHNQRERSIIVIIKDDIPIERLPRDLKYIWWTIVS 201
Query: 496 LKLNHYASNMEQFWDRLYYSLK 517
++ NM+ FW+ + +L+
Sbjct: 202 IRWPDGNENMDLFWEEIAAALR 223
>gi|402081162|gb|EJT76307.1| hypothetical protein GGTG_06227 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
NC F F KE HT G+++ L+ P V AGY V HP + F+RIQ DG
Sbjct: 29 NCSDFTFMKEDHTLGNLLCEHLKQQPNVLMAGYKVGHPNVPEFFLRIQT-DG 79
>gi|291603472|gb|ADE20131.1| primary response protein 88a [Cyprinus carpio]
Length = 288
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 21/235 (8%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMDIKAPPNPNCED 295
S+DY IP+ A+ R+ L ++P N D+R +A++MD N E
Sbjct: 6 SIDYEAIPVTALNCSFRKKLG-------LYLNPTNAVAADWRTVAEMMDFTYLEIKNFEK 58
Query: 296 L---MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRL 352
+++ +W R +A L FLE +R DV D I++DC Y +L
Sbjct: 59 REYPFERVLTEWET-----RPEATVANLLSFLEKAERKDVISDLKDIIDDDCRKYLERQL 113
Query: 353 GNSISKNGACMDDPSVITIEDVKSLNLGCGLA--HYDALLLYDEADFDLAKQFNTQLNKM 410
+ P E + + GL +DA + Y + DF + QL +
Sbjct: 114 RKPVQVPVVDSCGPRTQEREGITLCDDPQGLTPETFDAFICYCQNDFQFVHEMIKQLEQT 173
Query: 411 GFT--VCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 174 EYNLKLCVFDRDVLPGTCVWTITSELIEKRCKRMVVVISDDYLDSDACDFQTKFA 228
>gi|408388350|gb|EKJ68036.1| hypothetical protein FPSE_11847 [Fusarium pseudograminearum CS3096]
Length = 136
Score = 48.1 bits (113), Expect = 0.015, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV KE HT G++++ L+ +P V AGY + HP ++FIR+Q D+
Sbjct: 38 NTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQTDGTITPRDVFT 97
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 98 SVCEKLINQLEMLHQEFTREWELRRI 123
>gi|170099820|ref|XP_001881128.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643807|gb|EDR08058.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 150
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 79 NYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYS 138
N E LE+ E+ ++T PN T K+ HT G+++ L S P++ FAGY
Sbjct: 5 NRYELYVLEDGEKPVEITEDT--KIPNAATIKIVKQDHTLGNMLRAQLLSMPQILFAGYK 62
Query: 139 VPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
VPHP I+IQ IL + +L + FN K
Sbjct: 63 VPHPLHPYFLIKIQTDGTITPQAILHQACTKLIGTMSSLETKFNREFSFK 112
>gi|298186965|gb|ADC45019.2| myeloid differentiation primary response protein 88a [Cyprinus
carpio]
Length = 284
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 21/235 (8%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMDIKAPPNPNCED 295
S+DY IP+ A+ R+ L ++P N D+R +A++MD N E
Sbjct: 6 SIDYEAIPVTALNCSFRKKLG-------LYLNPTNAVAADWRTVAEMMDFTYLEIKNFEK 58
Query: 296 L---MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRL 352
+++ +W R +A L FLE +R DV D I++DC Y +L
Sbjct: 59 REYPFERVLTEWET-----RPEATVANLLSFLEKAERKDVISDLKDIIDDDCRKYLERQL 113
Query: 353 GNSISKNGACMDDPSVITIEDVKSLNLGCGLA--HYDALLLYDEADFDLAKQFNTQLNKM 410
+ P E + + GL +DA + Y + DF + QL +
Sbjct: 114 RKPVQVPVVDSCGPRTQEREGITLCDDPQGLTPETFDAFICYCQNDFQFVHEMIKQLEQT 173
Query: 411 GFT--VCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 174 EYNLKLCVFDRDVLPGTCVWTITSELIEKRCKRMVVVISDDYLDSDACDFQTKFA 228
>gi|392562097|gb|EIW55278.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 139
Score = 47.8 bits (112), Expect = 0.018, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
E PV D + PN T K+ HT +++ L S P+V FAGY VPHP
Sbjct: 14 EGERPVEVTEDTKI---PNAATVKIVKQDHTLANLLRSQLLSMPQVTFAGYKVPHPLHPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITET 180
++IQ + LE+AC ++ T
Sbjct: 71 FLLKIQTDGSVTPTQV-------LETACTKLIGT 97
>gi|302501322|ref|XP_003012653.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
gi|291176213|gb|EFE32013.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
Length = 149
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 93 WELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
+EL N P+ F F KE HT G++I L V F+GY +PHP ++ +R+Q
Sbjct: 38 YELPSNKALGVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQ 97
Query: 153 VKDG 156
DG
Sbjct: 98 T-DG 100
>gi|19114245|ref|NP_593333.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe
972h-]
gi|3219850|sp|P87123.1|RPB11_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 14.1 kDa polypeptide
gi|256599725|pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599737|pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2104423|emb|CAB08752.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529239|dbj|BAA22801.1| RNA polymeraseII subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529251|dbj|BAA22806.1| RNA polymerase II subunit Rpb11 [Schizosaccharomyces pombe]
gi|2708530|gb|AAB92517.1| Rpb11 [Schizosaccharomyces pombe]
Length = 123
Score = 47.8 bits (112), Expect = 0.020, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN EKE HT +++ + L S V FAGY VPHP + +R+Q + ++
Sbjct: 27 PNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVI 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
K L + + I F + K+I
Sbjct: 87 VDAAKSLITHLEEIKVNFMREWELKMI 113
>gi|393245982|gb|EJD53491.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 148
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T K+ HT ++I L S P V FAGY VPHP + +++Q ++
Sbjct: 28 PNAATIKIIKQDHTMANMIRAQLLSMPGVLFAGYKVPHPLEPYFILKVQTDGQRTPAQVV 87
Query: 164 KKGIKELESACDRITETF 181
+ +EL +TE F
Sbjct: 88 QAACQELIQTISILTERF 105
>gi|303316247|ref|XP_003068128.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240107804|gb|EER25983.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320032518|gb|EFW14471.1| DNA-directed RNA polymerase II [Coccidioides posadasii str.
Silveira]
Length = 128
Score = 47.8 bits (112), Expect = 0.020, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ F F KE HT G++I L V FAGY VPHP + +R+Q D +
Sbjct: 28 PSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
EL ++ F + +
Sbjct: 88 LTACHELVKDLGTLSREFTKEFELR 112
>gi|25012186|gb|AAN71209.1| GM15177p [Drosophila melanogaster]
Length = 136
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 105 NCRTFVFEKEGHTFGS-----------VITH--------ILQSYPEVDFAGYSVPHPADF 145
N F KE HT G+ +ITH L P V FAGY VPHP +
Sbjct: 29 NAAIFTINKEDHTLGNMIRKYVGQQARLITHEICILACSQLLKDPNVLFAGYKVPHPLEH 88
Query: 146 QIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
+ IRIQ Y + I +L + E F DA++ K
Sbjct: 89 KFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEK 131
>gi|50305029|ref|XP_452472.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641605|emb|CAH01323.1| KLLA0C06160p [Kluyveromyces lactis]
Length = 121
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 110 VFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKE 169
FEKE HT G++I L V FA Y V HP + +RIQ +GYD D LK
Sbjct: 34 TFEKEDHTLGNLIRAELLEDEGVLFAAYKVEHPLFAKFKMRIQTVEGYDPKDALK----- 88
Query: 170 LESACDRI 177
+AC+ I
Sbjct: 89 --NACNSI 94
>gi|119176958|ref|XP_001240328.1| DNA-directed RNA polymerase II [Coccidioides immitis RS]
gi|392867711|gb|EAS29036.2| DNA-directed RNA polymerase II [Coccidioides immitis RS]
Length = 128
Score = 47.4 bits (111), Expect = 0.022, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ F F KE HT G++I L V FAGY VPHP + +R+Q D +
Sbjct: 28 PSTAIFTFNKEDHTLGNLIRAQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
EL ++ F + +
Sbjct: 88 LTACHELVKDLGTLSREFTKEFELR 112
>gi|302677665|ref|XP_003028515.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
gi|300102204|gb|EFI93612.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
Length = 149
Score = 47.4 bits (111), Expect = 0.024, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 79 NYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYS 138
N E LE+ E+ ++T PN T K+ HT +++ L + P+V FAGY
Sbjct: 5 NRYELYVLEDEEKFLEVNEDT--KVPNAVTVKIVKQDHTLANMLRSQLLNNPQVLFAGYK 62
Query: 139 VPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRI 177
VPHP + +RIQ DG + +I LE AC ++
Sbjct: 63 VPHPLEPYFLLRIQT-DGTITPEI------ALEQACTQL 94
>gi|397616203|gb|EJK63876.1| hypothetical protein THAOC_15445 [Thalassiosira oceanica]
Length = 123
Score = 47.4 bits (111), Expect = 0.024, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS-IDIL 163
N TF KE HT G+++ L P+V FAGY PHP +I +++Q + + L
Sbjct: 30 NAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESL 89
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I++L + D + + DA++
Sbjct: 90 SAAIEDLSNETDHLITSVTDAIE 112
>gi|195344678|ref|XP_002038908.1| GM17133 [Drosophila sechellia]
gi|194134038|gb|EDW55554.1| GM17133 [Drosophila sechellia]
Length = 105
Score = 47.4 bits (111), Expect = 0.025, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDHNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFM 88
Query: 165 KGIKEL 170
I +L
Sbjct: 89 NAITDL 94
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 96 RDNTLNVKPNCR-----TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIR 150
RD L V R T+ F E HT G + + + + F GY VPHP + +I
Sbjct: 378 RDVGLEVAHMSRDKRRITYTFHGEDHTLGLALRYCILHSTKATFCGYCVPHPLEDKIHFD 437
Query: 151 IQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
+QVK+G + D L++G+ L I F A+Q
Sbjct: 438 VQVKNG-SAHDALREGLLCLRDCFIHIKSAFKAALQ 472
>gi|50424419|ref|XP_460797.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
gi|49656466|emb|CAG89138.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
Length = 122
Score = 47.4 bits (111), Expect = 0.026, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 37/88 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT G++I L V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAALIKIEREDHTLGNLIRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
+ L D I F D K +L
Sbjct: 88 RNACSGLIGELDVIKTRFKDEWALKSLL 115
>gi|413937801|gb|AFW72352.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 75
Score = 47.4 bits (111), Expect = 0.027, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRI 151
N +F E+E HT G+++ L P V FAGY +PHP ++I +R+
Sbjct: 29 NAASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|258564550|ref|XP_002583020.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237908527|gb|EEP82928.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 125
Score = 47.0 bits (110), Expect = 0.028, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ F F KE HT G++I L V FAGY VPHP + +R+Q D +
Sbjct: 25 PSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFMLRVQTDGTITPKDAV 84
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
EL ++ F + +
Sbjct: 85 LTACHELVKDLGTLSREFTKEFELR 109
>gi|45185683|ref|NP_983399.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|44981438|gb|AAS51223.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|374106605|gb|AEY95514.1| FACL005Cp [Ashbya gossypii FDAG1]
Length = 122
Score = 47.0 bits (110), Expect = 0.030, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 97 DNTLNVKPNCRT-----FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRI 151
++ L ++P+ + FEKE HT G++I L V FA Y V HP + +RI
Sbjct: 16 ESKLKIEPDTKAANAVIITFEKEDHTLGNIIRAELLEDERVLFAAYKVEHPLFARFRMRI 75
Query: 152 QVKDGYDSIDILKKGIKELESACDRI 177
Q +GYD + LK +AC+ I
Sbjct: 76 QTAEGYDPKEALK-------NACNSI 94
>gi|358389646|gb|EHK27238.1| hypothetical protein TRIVIDRAFT_63005 [Trichoderma virens Gv29-8]
Length = 126
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G+++ ++++P V AGY + HP +++IR+Q D+
Sbjct: 29 NTSDFILKKEDHTLGNLLAEHIKAHPNVYMAGYKIAHPNVPELYIRVQTDGTISPRDVFT 88
Query: 165 KGIKELESACDRITETFNDAMQCKVI 190
++L + + + + F + + I
Sbjct: 89 SVCEKLINQLEMLYQEFTREWELRRI 114
>gi|452980663|gb|EME80424.1| hypothetical protein MYCFIDRAFT_78162 [Pseudocercospora fijiensis
CIRAD86]
Length = 124
Score = 47.0 bits (110), Expect = 0.032, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F F KE HT G+++ L V FAGY VPHP +R+Q + +
Sbjct: 28 PNAAMFTFNKEDHTLGNLLRAKLAKSEHVLFAGYQVPHPLFATFKLRVQTDGEVSPKEAV 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
+E+ ++ + F + K I
Sbjct: 88 VNACREVVKELGQLDQEFTKEFELKKI 114
>gi|123508377|ref|XP_001329625.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121912671|gb|EAY17490.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 124
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD------ 158
NC TF +KE HT G+++T L + + FAGY + HP I IR++ +
Sbjct: 34 NCYTFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKASQNVNHPKELI 93
Query: 159 --SIDILKKGIKELESACDRITETFNDAMQ 186
+I+ LK I L+S+ ++F+ Q
Sbjct: 94 DPAIEALKTKIAGLQSSFISSCQSFDKRSQ 123
>gi|412986323|emb|CCO14749.1| predicted protein [Bathycoccus prasinos]
Length = 118
Score = 47.0 bits (110), Expect = 0.034, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FV +E HT G+++ L + P V FAGY PHP D +I I++ + + ++
Sbjct: 29 NAGEFVLMREDHTLGNMLRMELHNDPNVVFAGYQHPHPTDHRILIKVHTNGETNPVRAMR 88
Query: 165 KGIKELESACDRITETFNDAMQ 186
+ + L + + + ++
Sbjct: 89 EANQRLTEQVESLKTQWESELE 110
>gi|395324938|gb|EJF57369.1| DNA-directed RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 142
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T K+ HT +++ L YP V FAGY PHP ++IQ IL
Sbjct: 28 PNAATIKIVKQDHTLANLLRSQLLGYPSVLFAGYKAPHPLQPHFLLKIQTDGSITPAAIL 87
Query: 164 KKGIKEL 170
+K +L
Sbjct: 88 EKACTDL 94
>gi|310792346|gb|EFQ27873.1| hypothetical protein GLRG_03017 [Glomerella graminicola M1.001]
Length = 125
Score = 46.6 bits (109), Expect = 0.039, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G++++ L+ + V AGY + HP ++FIR+Q + + L
Sbjct: 29 NTSDFIIKKEDHTLGNLLSEHLKMHKNVLMAGYKISHPNVPEMFIRVQTDGSITAKEALV 88
Query: 165 KGIKELESACDRITETFNDAMQCKVILK 192
+ IK+L ++ F + + +++
Sbjct: 89 QVIKKLMQDLSHLSREFTREFELRRMVE 116
>gi|443717012|gb|ELU08251.1| hypothetical protein CAPTEDRAFT_97316 [Capitella teleta]
Length = 64
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 132 VDFAGYSVPHPADFQIFIRIQVK--DGYDSIDILKKGIKELESACDRITETF 181
V+F GYSVPHP++ +I +RIQ K + S+ +L+KG+ +L+ + +TF
Sbjct: 8 VEFCGYSVPHPSETKINLRIQTKGTNRVISMSVLEKGLNDLKKVSKHVLDTF 59
>gi|367025619|ref|XP_003662094.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila ATCC
42464]
gi|347009362|gb|AEO56849.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 46.6 bits (109), Expect = 0.041, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
NC F+ KE HT G++++ L+ P V AGY + HP ++ IR+Q DG
Sbjct: 3 NCSDFILLKEDHTLGNLLSAYLKMAPHVMMAGYKIGHPNVPEVLIRVQT-DG 53
>gi|296805491|ref|XP_002843570.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
gi|238844872|gb|EEQ34534.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
Length = 161
Score = 46.6 bits (109), Expect = 0.041, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V FAGY +PHP ++ +R+Q DG
Sbjct: 61 PSTAIFTFNKEDHTLGNMIRARLLQSQHVLFAGYKIPHPLVHKVLLRVQT-DG 112
>gi|396457950|ref|XP_003833588.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
gi|312210136|emb|CBX90223.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
Length = 163
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIF-IRIQVKDGYDSIDI 162
P+ F F KE HT G++++ L Y +V FA Y VPHP F +F +R+Q D
Sbjct: 61 PHTAIFTFNKEDHTLGNLLSQRLLKYDQVMFAAYKVPHPL-FAMFELRVQTDGSITPKDA 119
Query: 163 LKKGIKELESACDRITETFNDAMQCKVIL 191
+ + +++ ++ ++F K I+
Sbjct: 120 VVRCCRDVVQDLQKLNDSFQQEWLGKRIV 148
>gi|425766844|gb|EKV05438.1| hypothetical protein PDIP_82960 [Penicillium digitatum Pd1]
gi|425780180|gb|EKV18198.1| hypothetical protein PDIG_11460 [Penicillium digitatum PHI26]
Length = 127
Score = 46.6 bits (109), Expect = 0.043, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G+++ H L V FA Y VPHP + +RIQ DG
Sbjct: 28 PSAAIFTFRKEDHTLGNMLRHRLLKTAHVIFAAYRVPHPLTPEFQLRIQT-DG 79
>gi|170586962|ref|XP_001898248.1| RNA polymerase II. [Brugia malayi]
gi|158594643|gb|EDP33227.1| RNA polymerase II., putative [Brugia malayi]
Length = 133
Score = 46.6 bits (109), Expect = 0.046, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 104 PNCRTFVFEKEGHTFGSVITHIL-----QSY-----------PEVDFAGYSVPHPADFQI 147
PN F KE HT G+++ +SY P+V FAGY PHP + +
Sbjct: 28 PNAAIFTVNKEDHTIGNLLKQFAAKIFHKSYFGTFCSQLLKDPQVLFAGYKCPHPLEHKF 87
Query: 148 FIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQ 186
+R+Q D L I +L + E F +A++
Sbjct: 88 ILRVQTTSDTTPEDALTSAITDLMAELSLFEERFREAIK 126
>gi|160331703|ref|XP_001712558.1| rpc9 [Hemiselmis andersenii]
gi|159766007|gb|ABW98233.1| rpc9 [Hemiselmis andersenii]
Length = 100
Score = 46.6 bits (109), Expect = 0.047, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 95 LRDNTLNVKPNCRTFV--FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
+R +N+K + + F E HT G+++ +++ P +D+ GY++PHP++ + ++I
Sbjct: 1 MRKKIINIKKTQKVILISFYNEDHTLGNILRTVIEGNPNIDYVGYNIPHPSENIMNLKIS 60
Query: 153 VKDGYDSIDILKKGIK 168
+DS++ G+K
Sbjct: 61 -SSKFDSLEPFILGLK 75
>gi|367005132|ref|XP_003687298.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
gi|357525602|emb|CCE64864.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
Length = 120
Score = 46.2 bits (108), Expect = 0.050, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FEKE HT G++I + L + +V FA Y V HP + +RIQ ++ YD D LK
Sbjct: 29 NAVVITFEKEDHTLGNLIRNELLNDEKVLFAAYKVEHPLFARFKLRIQTEENYDPKDALK 88
>gi|209877969|ref|XP_002140426.1| DNA-directed RNA polymerases I and III subunit RPAC2
[Cryptosporidium muris RN66]
gi|209556032|gb|EEA06077.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Cryptosporidium muris RN66]
Length = 160
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
TF E HT G+++ H+ P FAGY++PHP+ + +RI+ D
Sbjct: 34 TFQINGEDHTLGNIMRHLAMLNPSTTFAGYAIPHPSISSMNLRIETVSNVD 84
>gi|121711221|ref|XP_001273226.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
gi|119401377|gb|EAW11800.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
Length = 165
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G+++ L P V FAGY +PHP + +RIQ DG
Sbjct: 64 PSTAIFTFNKEDHTLGNLLRSRLLQSPHVLFAGYKIPHPLVPKFELRIQT-DG 115
>gi|406861045|gb|EKD14101.1| DNA-directed RNA polymerase II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 122
Score = 46.2 bits (108), Expect = 0.054, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
F F KE HT +++ L P V FAGY +PHP + +R+Q + L K K
Sbjct: 33 FTFNKEDHTLANILRAHLVKDPHVLFAGYKIPHPLFAKFELRVQTDGTVSPKEALVKCCK 92
Query: 169 ELESACDRITETFNDAMQCK 188
EL + + ++ F + +
Sbjct: 93 ELVAEMETLSREFTKEYELR 112
>gi|449472913|ref|XP_004153732.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like, partial [Cucumis sativus]
Length = 59
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV 153
TF E HT + + L P V F GYS+PHP+D ++ IR+Q
Sbjct: 13 TFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQT 58
>gi|71754779|ref|XP_828304.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833690|gb|EAN79192.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334129|emb|CBH17123.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 132
Score = 46.2 bits (108), Expect = 0.060, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGY-DSID 161
PN F ++E HT +++ L P V AGY VPHP ++ +R+Q DG I
Sbjct: 37 PNSSLFKLDREDHTLANLLRMRLHENPLVHIAGYRVPHPTQHRVELRVQTSSDGTGKPIP 96
Query: 162 ILKKGIKELESACDRITETFNDA 184
K+ + E +C + E F A
Sbjct: 97 TPKEALLEAVGSCMKDLEEFEGA 119
>gi|221487866|gb|EEE26098.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii GT1]
Length = 178
Score = 46.2 bits (108), Expect = 0.061, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
P C TFVF E +T G +I + L + P V F G PHP + +I +RIQ
Sbjct: 35 PLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQ 83
>gi|237830945|ref|XP_002364770.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|211962434|gb|EEA97629.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|221507649|gb|EEE33253.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 178
Score = 46.2 bits (108), Expect = 0.061, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
P C TFVF E +T G +I + L + P V F G PHP + +I +RIQ
Sbjct: 35 PLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQ 83
>gi|340058381|emb|CCC52737.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 132
Score = 45.8 bits (107), Expect = 0.066, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYD-SID 161
PN F +KE HT +++ L V AGY VPHP ++ +R+Q DG +I
Sbjct: 37 PNSSLFKIDKEDHTLANLLRMRLHENSLVRIAGYRVPHPTQHRVELRVQTASDGSGRAIP 96
Query: 162 ILKKGIKELESACDRITETFNDAMQCKVILK 192
K+ + E C + +TF + ++ + +K
Sbjct: 97 TPKEALLEAVDGCMKDLQTFEELLRLEAQVK 127
>gi|413937799|gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]
Length = 75
Score = 45.8 bits (107), Expect = 0.067, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRI 151
N +F E+ HT G+++ L P V FAGY +PHP ++I +R+
Sbjct: 29 NAASFTVERVDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|47187235|emb|CAG14790.1| unnamed protein product [Tetraodon nigroviridis]
Length = 60
Score = 45.8 bits (107), Expect = 0.071, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
C TFV E HT G+ + +++ +V+F GY++ HP++ +I RIQ +
Sbjct: 10 CVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTR 58
>gi|344233314|gb|EGV65187.1| RBP11-like subunits of RNA polymerase [Candida tenuis ATCC 10573]
gi|344233315|gb|EGV65188.1| hypothetical protein CANTEDRAFT_113704 [Candida tenuis ATCC 10573]
Length = 121
Score = 45.8 bits (107), Expect = 0.071, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 36/88 (40%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN EKE HT +++ L V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIIKIEKEDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDNYTPKEAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
+ L D I F D K +L
Sbjct: 88 RNACTNLIGELDLIKNKFKDEWALKSLL 115
>gi|149243898|ref|XP_001526543.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448937|gb|EDK43193.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 121
Score = 45.8 bits (107), Expect = 0.071, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L P V FA Y V HP +RIQ ++ Y + L
Sbjct: 28 PNAAIIKIEREDHTLANLLRAQLLKDPRVIFAAYKVEHPLFANFVLRIQTEEDYTPKEAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
K L + I F++ KV+L
Sbjct: 88 KNACNMLINELGAIKSKFSEEWALKVLL 115
>gi|320591999|gb|EFX04438.1| DNA-directed RNA polymerase 2 subunit [Grosmannia clavigera kw1407]
Length = 168
Score = 45.8 bits (107), Expect = 0.071, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ KE HT G+++ L+ +P++ AGY V HP ++ +R+Q ++L
Sbjct: 69 NTSDFLMLKEDHTLGNLLAEHLKMHPKILMAGYKVAHPNVAEVLLRVQTDGTVTPKEVLV 128
Query: 165 KGIKELESACDRITETF 181
+ K+L + ++ F
Sbjct: 129 EVCKQLVATLGHLSREF 145
>gi|449295408|gb|EMC91430.1| hypothetical protein BAUCODRAFT_127330 [Baudoinia compniacensis
UAMH 10762]
Length = 122
Score = 45.8 bits (107), Expect = 0.073, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIF-IRIQ 152
PN F F KE HT G+++ L P V FA Y VPHP F +F +R+Q
Sbjct: 28 PNAALFTFNKEDHTLGNLLRAKLTKSPHVLFAAYQVPHPL-FAVFKLRVQ 76
>gi|442759487|gb|JAA71902.1| Putative death domain of p75 neurotophin receptor [Ixodes ricinus]
Length = 142
Score = 45.8 bits (107), Expect = 0.076, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 241 IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLM----DIKAPPNPNCEDL 296
+ IP+ I ++ VL+ +L + L+ P Y RD+RGLA L D E
Sbjct: 19 VDIPLAVIGLRSLAVLSSRLDVTQILVGPHGY-RDWRGLAALAGFDRDSVELMGQRGESP 77
Query: 297 MKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGN 354
+ + + W S +R ++ + LE ++RFDV DD + ++ D + N G+
Sbjct: 78 TEALIDAWVAQSRKERVTLHL--LIQNLELLERFDVIDDVMPHLDHDVKLFRNKHSGD 133
>gi|365984675|ref|XP_003669170.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
gi|343767938|emb|CCD23927.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
Length = 122
Score = 45.4 bits (106), Expect = 0.084, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F+KE HT G++I L + +V FA Y V HP +RIQ +GYD L
Sbjct: 28 PNAVVITFQKEDHTLGNLIRSELLNDGKVLFAAYKVEHPFFANFKLRIQTVEGYDPKLAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNNI 94
>gi|334185913|ref|NP_001190064.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|332645369|gb|AEE78890.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 146
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
N +F E+E HT G+++ L V FAGY +PHP ++I +R KD + ++ ++
Sbjct: 29 NAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR-DPKDWFRNLKVV 86
>gi|429860805|gb|ELA35525.1| amino acid permease [Colletotrichum gloeosporioides Nara gc5]
Length = 855
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ +KE HT G++++ L+ + V AGY + HP ++FIR+Q + L
Sbjct: 759 NTSDFILKKEDHTLGNLLSEHLKQHKNVLMAGYKISHPNVPELFIRVQTDGSIPPKEALV 818
Query: 165 KGIKELESACDRITETFNDAMQCKVILK 192
+ IK L ++ F + + +++
Sbjct: 819 QVIKRLMQDFSHLSREFTREFELRRMVE 846
>gi|440632021|gb|ELR01940.1| hypothetical protein GMDG_05113 [Geomyces destructans 20631-21]
Length = 189
Score = 45.4 bits (106), Expect = 0.094, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS---- 159
PN F KE HT +++ L P V FAGY VPHP I +R+Q DG +
Sbjct: 90 PNSSIFTILKEDHTLANLLRAHLLKDPHVTFAGYRVPHPLFATIELRVQT-DGTLTPKEA 148
Query: 160 -IDILKKGIKELESACDRITETF 181
I I K + EL T+ F
Sbjct: 149 VIGIAKSLVAELAQLSREFTKEF 171
>gi|443688608|gb|ELT91256.1| hypothetical protein CAPTEDRAFT_182573 [Capitella teleta]
Length = 378
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 38/292 (13%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQR-DYRGLAD--------LMDIKAPPNPNCE 294
P+ A+ R+ L L K + EN + D+RGL + L + NP
Sbjct: 25 PVRALNESCRKQLALHLNPEKDTL--ENGKATDWRGLGECCGFDCMELDNFALHENPTL- 81
Query: 295 DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCI--GFIEEDC---LYYEN 349
++ ++W K+ +I + F + + R+D+ +D I IE D + E
Sbjct: 82 ----RVLKEWGKNPEA-----SIGRLVEFFKEMGRWDIIEDDIIHRRIEHDVKSFMEAEE 132
Query: 350 TRLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLN- 408
R S+NG P + + ++ L ++DA + Y +DF+ + ++
Sbjct: 133 RRRVIEESENGM----PKYAESDAIVKGDVDGDLEYFDAFVCYTHSDFEWLRTMMFEMEK 188
Query: 409 KMGFTVCDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHI 467
K G +C + G ++SA +++ +RC +++++S ++ N+ T +A A
Sbjct: 189 KRGLKLCIIGRDLIGGTCKYSAISKLIKERCRKMVIIISQNYSNSEECDFQTHFAHA-LA 247
Query: 468 DHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN--MEQFWDRLYYSLK 517
+ ++IP++ + V V + L Y + +E FW +L S++
Sbjct: 248 PGSRSKRLIPVVIEKN---VRIPDVLVPITLLDYTKDDLIEWFWGKLDASIR 296
>gi|356516832|ref|XP_003527097.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Glycine max]
Length = 90
Score = 45.4 bits (106), Expect = 0.098, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
N +F E+E HT +++ L P V F GY +PHP ++I +R QV+
Sbjct: 29 NAASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVREQVE 78
>gi|449480053|ref|XP_002193087.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Taeniopygia guttata]
Length = 94
Score = 45.4 bits (106), Expect = 0.10, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F A++ K
Sbjct: 31 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDK 89
>gi|390599050|gb|EIN08447.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 140
Score = 45.1 bits (105), Expect = 0.11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ PV + D + PN T K+ HT ++I L + P+V FAGY VPHP
Sbjct: 14 DGEKPVEVIEDTKI---PNAATIKIVKQDHTLANMIRAELLASPQVLFAGYKVPHPLQPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRI 177
I++Q I +ESAC ++
Sbjct: 71 FLIKLQTDGSVTPTAI-------MESACTKL 94
>gi|393213875|gb|EJC99370.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 171
Score = 45.1 bits (105), Expect = 0.11, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN T K+ HT G+++ H L + V FAGY VPHP ++IQ L
Sbjct: 28 PNAATIKIRKQDHTLGNMLRHQLLANQSVLFAGYRVPHPLQPYFLLKIQTDGTITPSQAL 87
Query: 164 KKGIKELESACDRITETFNDAMQ 186
+K +L + F Q
Sbjct: 88 EKASTDLIGTLTTLETKFRREFQ 110
>gi|327304679|ref|XP_003237031.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|326460029|gb|EGD85482.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 160
Score = 45.1 bits (105), Expect = 0.12, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V F+GY +PHP ++ +R+Q DG
Sbjct: 60 PSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQT-DG 111
>gi|15227556|ref|NP_180514.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|79323435|ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|1184686|gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis
thaliana]
gi|1184688|gb|AAC49454.1| Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit
[Arabidopsis thaliana]
gi|3980382|gb|AAC95185.1| DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14) [Arabidopsis
thaliana]
gi|26452894|dbj|BAC43525.1| putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14
[Arabidopsis thaliana]
gi|28827296|gb|AAO50492.1| putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|330253175|gb|AEC08269.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
gi|330253176|gb|AEC08270.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis thaliana]
Length = 122
Score = 45.1 bits (105), Expect = 0.13, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT + + +L P V A Y++PHP+ Q+ IR+Q G + ++ K
Sbjct: 13 SFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTT-GDPAREVFKDAC 71
Query: 168 KELESACDRITETFNDAM 185
+EL + F+ A+
Sbjct: 72 QELMQMNRHVRSVFDKAV 89
>gi|448089577|ref|XP_004196845.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|448093877|ref|XP_004197876.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359378267|emb|CCE84526.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359379298|emb|CCE83495.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 45.1 bits (105), Expect = 0.13, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 37/88 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L +V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIIKIEREDHTLANLLRAQLLKDEKVLFAAYKVEHPLFANFVLRIQTEDDYSPREAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVIL 191
+ L D I F D K +L
Sbjct: 88 RNACSALIGELDIIKTRFKDEWALKSLL 115
>gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis
gaditana CCMP526]
Length = 126
Score = 45.1 bits (105), Expect = 0.14, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 82 ESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPH 141
+S +L E +D+ N T V KE HT G++I L +V FAGY PH
Sbjct: 8 DSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPH 67
Query: 142 PADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P +I +R+Q D L ++ LE+A + + F
Sbjct: 68 PLIHKIELRVQTLD-----RALSTPMQALENALSDLNQEF 102
>gi|297822669|ref|XP_002879217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325056|gb|EFH55476.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 44.7 bits (104), Expect = 0.14, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT + + +L P V A Y++PHP+ Q+ IR+Q G + ++ K
Sbjct: 13 SFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTT-GDPAREVFKDAC 71
Query: 168 KELESACDRITETFNDAM 185
+EL + F+ A+
Sbjct: 72 QELMQMNRHVRSVFDKAV 89
>gi|330834285|ref|YP_004409013.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
gi|329566424|gb|AEB94529.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
Length = 90
Score = 44.7 bits (104), Expect = 0.14, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
F + E HT G+++ ++ P V + Y +PHP ++ I+++ +D LKK I+
Sbjct: 15 FRIQGEDHTLGNLVAATMRRVPGVILSTYYLPHPLKDELIIKVKTDGSISPVDALKKAIE 74
Query: 169 ELESACD 175
++E +
Sbjct: 75 QIEKTAE 81
>gi|299741997|ref|XP_001832180.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea okayama7#130]
gi|298404981|gb|EAU89553.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea okayama7#130]
Length = 102
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ E HT G+ + +L + PHP++ I +RIQ+ DG S+D L K +
Sbjct: 22 TYQLHDESHTIGNSLRWMLMK---------NNPHPSENVINVRIQMYDGLSSLDALLKAL 72
Query: 168 KELESACDRITETFNDAMQ 186
+L++ C+ + + + ++++
Sbjct: 73 SDLDNLCEAVEDAYLESLR 91
>gi|326472986|gb|EGD96995.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
gi|326477317|gb|EGE01327.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 160
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V F+GY +PHP ++ +R+Q DG
Sbjct: 60 PSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQT-DG 111
>gi|226294779|gb|EEH50199.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 56
Score = 44.7 bits (104), Expect = 0.15, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 139 VPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
+PHP++ ++ +RIQ D +I +L+KG +L CD +TETF +A
Sbjct: 1 MPHPSEAKMNLRIQTYDTTTAIAVLEKGFDDLMELCDVVTETFTEA 46
>gi|292630832|sp|C8BKC7.2|MYD88_SHEEP RecName: Full=Myeloid differentiation primary response protein
MyD88
Length = 296
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 26/220 (11%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ LA+ MD + E D ++ +DW + R ++ L L + R D
Sbjct: 46 DWTVLAEAMDFEYLEIQQLEKYADPTSRLLDDWQR-----RPGASVGRLLELLAKLGRED 100
Query: 332 VYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCG 382
V + IEEDC Y E +SI + ++D + ITI D LG
Sbjct: 101 VLMELGPSIEEDCQKYILKQQQEASEKPLQVDSIDSSIPRINDMAGITIRDDP---LGQK 157
Query: 383 LAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
++DA + Y +D + + QL + + +C D L G S ++++ RC
Sbjct: 158 PEYFDAFICYCPSDIEFVHEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 217
Query: 440 CVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
++V++S ++ + T++A + + H K +IPI
Sbjct: 218 RMVVVVSDXYLQSKECDFQTKFALS--LSPGAHQKRLIPI 255
>gi|291241449|ref|XP_002740628.1| PREDICTED: myeloid differentiation primary response gene 88-like
[Saccoglossus kowalevskii]
Length = 306
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 40/300 (13%)
Query: 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMD---IKAPPNPNCEDL 296
Y IP IRPK+ VL C Q M+ +D+ LAD MD ++ +D
Sbjct: 21 YFSIPANIIRPKSLLVL----C---QHMNIPRPGKDWMMLADNMDYSMLEIQTFERSQDP 73
Query: 297 MKKMFEDW-TKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLG-- 353
+ + DW K ST I L L +DR+DV+DD +E D ++ +
Sbjct: 74 TRSLMNDWGMKGST-------IGELLQMLLDLDRYDVFDDLRKPLERDIGKWKIDQKKAQ 126
Query: 354 ---------NSISKNGACMDDPSVITIEDVKSLNL-----GCGLAHYDALLLYDEADFDL 399
N I + ++ P++ + ++++ + L G +DA + + D
Sbjct: 127 DELDAPIQVNEIHTSTQSVNYPNLPSTDELRGITLRDHASGEYPEIFDAYVCACDKDHSF 186
Query: 400 AKQFNTQLNKMGFT--VCDKDNSFLTGQFEHSAFIQVM-DRCTCVIVLMSTHFMNNSLLH 456
+ +L K + +C + + G SA ++++ +RC +I+++S F+N+
Sbjct: 187 VLEVMKRLEKPPYNLKLCVEFRDLVPGNTYVSATVELIHNRCKRMIIVVSPDFLNSEQCE 246
Query: 457 SLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516
+ A + + +I+PIL L++ K E FW RL+ SL
Sbjct: 247 FQAKVALSFSPGARM-KRIVPILLKACEMP-PILRHITKCDYTR-PDLREWFWQRLFRSL 303
>gi|389748032|gb|EIM89210.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 166
Score = 44.7 bits (104), Expect = 0.16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
E PV + D + PN T K+ HT G++I L P+V FAGY VPHP
Sbjct: 14 EGEKPVEIVEDTKI---PNAATIKVLKQDHTLGNMIRAQLLQSPQVLFAGYKVPHPLHPY 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
I++Q DG + LE AC ++ T
Sbjct: 71 FLIKLQT-DGTIT------PAYALEQACTKLIGTL 98
>gi|225682162|gb|EEH20446.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289350|gb|EEH44862.1| DNA-directed RNA polymerase II [Paracoccidioides brasiliensis Pb18]
Length = 128
Score = 44.7 bits (104), Expect = 0.16, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L + V F+GY VPHP + +R+Q DG
Sbjct: 28 PSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQT-DG 79
>gi|347830775|emb|CCD46472.1| similar to DNA-directed RNA polymerase II subunit RPB11
[Botryotinia fuckeliana]
Length = 125
Score = 44.7 bits (104), Expect = 0.17, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
PN F F KE HT +++ L P V F+GY +PHP + +RIQ
Sbjct: 29 PNSSVFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQ 77
>gi|160331498|ref|XP_001712456.1| rpb11 [Hemiselmis andersenii]
gi|159765904|gb|ABW98131.1| rpb11 [Hemiselmis andersenii]
Length = 106
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRI------QVKDGYD 158
NC F EKE HT G +I L V F+GY PHP + I+++I KD +D
Sbjct: 30 NCGYFKIEKEDHTLGHLIHSKLLKEKSVIFSGYKRPHPLEHFIYLKIITDGVFSPKDAFD 89
Query: 159 SI 160
S+
Sbjct: 90 SV 91
>gi|295661939|ref|XP_002791524.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280081|gb|EEH35647.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 169
Score = 44.3 bits (103), Expect = 0.18, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L + V F+GY VPHP + +R+Q DG
Sbjct: 68 PSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQT-DG 119
>gi|395536502|ref|XP_003770254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Sarcophilus harrisii]
Length = 122
Score = 44.3 bits (103), Expect = 0.20, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F A++ K
Sbjct: 59 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDK 117
>gi|261200199|ref|XP_002626500.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593572|gb|EEQ76153.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607549|gb|EEQ84536.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327352540|gb|EGE81397.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 128
Score = 44.3 bits (103), Expect = 0.21, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L + V F+GY VPHP + +R+Q DG
Sbjct: 28 PSTAIFTFHKEDHTLGNMIRSRLINSSHVLFSGYKVPHPLVPKFILRVQT-DG 79
>gi|405975506|gb|EKC40065.1| Myeloid differentiation primary response protein MyD88 [Crassostrea
gigas]
Length = 473
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 131/316 (41%), Gaps = 60/316 (18%)
Query: 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLM--------DIKAPPN 290
Y I ++A+R R+ L+ L ++++ N DY GLA+++ + + N
Sbjct: 22 YKDISLDALRVSARKKLSLYLNVQSEIVNDANGLVSDYNGLAEMVGFGFLEIKEFERQKN 81
Query: 291 PNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENT 350
P E + +WT S L + I FL + R DV +DC I D Y
Sbjct: 82 PTDE-----LLTEWTNRSDLSPT---IGRLWEFLVELGRLDVLEDCKNLIIRDADAY--I 131
Query: 351 RLGNSISKNGACMDDPSVITIE-----DVKSLNLGC------GLAHY-DALLLYDEADFD 398
R+ + + + + V + E +V L + C G+ + DA + Y D
Sbjct: 132 RMKKEREEKESPLQEAWVTSTESAIDHNVDELAILCKDDVENGMPQFFDAFVCYSPQGED 191
Query: 399 LA--KQFNTQL----NKMGFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMN 451
L K+ T+L + + V +D+ L G + ++++ RC ++++MS ++ N
Sbjct: 192 LVFVKEMITKLESPPHNLKLFVPWRDD--LPGGARYVIDARLIEMRCRRMVIIMSRNYQN 249
Query: 452 NS-------LLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN 504
++ H+L+ A +K K+IP+L + Q + L Y
Sbjct: 250 SASADFQVKFAHALSPGARSK--------KLIPVLIES---GIQVPQVLRHVTLCDYTKQ 298
Query: 505 --MEQFWDRLYYSLKG 518
+ FWDRL ++K
Sbjct: 299 DLKDWFWDRLSKAIKA 314
>gi|156054532|ref|XP_001593192.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980]
gi|154703894|gb|EDO03633.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 124
Score = 43.9 bits (102), Expect = 0.23, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
PN F F KE HT +++ L P V F+GY +PHP + +RIQ
Sbjct: 29 PNSSIFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQ 77
>gi|225556050|gb|EEH04340.1| polymerase II polypeptide J [Ajellomyces capsulatus G186AR]
gi|240278457|gb|EER41963.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
gi|325090627|gb|EGC43937.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 168
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L + V F+GY VPHP + +R+Q DG
Sbjct: 68 PSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQT-DG 119
>gi|154275934|ref|XP_001538812.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150413885|gb|EDN09250.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 168
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L + V F+GY VPHP + +R+Q DG
Sbjct: 68 PSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQT-DG 119
>gi|306996586|gb|ADN22948.1| myeloid differentiation response protein 88 [Acipenser sinensis]
Length = 290
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQR-DYRGLADLMDIKAPPNPNCE- 294
++D+ IP+ A+ R+ L ++P++ D+ LA+ M + N E
Sbjct: 9 TIDFDSIPLTALNFTVRKKL-------ALYLNPKHVSAADWTALAEAMGFEYLEIKNYEQ 61
Query: 295 --DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCL-YYENTR 351
+ K + E+W +ST + L L ++R DV D G IEEDC Y + +
Sbjct: 62 YQNPTKMILENWQGTSTQA----TVGKLLEMLTAMERVDVISDLQGLIEEDCRKYLKKQQ 117
Query: 352 LGN---SISKNGACMD---DPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNT 405
L + + +C+ + + ITI+D S ++ +DA + Y D D +
Sbjct: 118 LQEQPVQVPEVDSCVPKTLEMNGITIDDDPSGHMP---ELFDAFICYCHRDIDFVHEMIR 174
Query: 406 QLNKM--GFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
QL + +C D L G S + ++ RC ++V++S ++++ T++A
Sbjct: 175 QLEQTECKLKLCVFDRDVLPGTCVWSITSEPIEKRCKRMVVIISDDYLDSDACDFQTKFA 234
>gi|395842980|ref|XP_003794284.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Otolemur
garnettii]
gi|402863133|ref|XP_003895886.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Papio
anubis]
Length = 87
Score = 43.9 bits (102), Expect = 0.25, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F A++ K
Sbjct: 24 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDK 82
>gi|378725610|gb|EHY52069.1| DNA-directed RNA polymerase II subunit J [Exophiala dermatitidis
NIH/UT8656]
Length = 269
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
PN FV+ KE HT G+ + L V +A Y VPHP + +RIQ DG
Sbjct: 173 PNTMIFVYNKEDHTLGNALVDQLHKNSHVTYAAYRVPHPLFARFELRIQT-DG 224
>gi|238579202|ref|XP_002388973.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
gi|215450762|gb|EEB89903.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
Length = 151
Score = 43.9 bits (102), Expect = 0.26, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
PN T K+ HT ++ L S P+V FAGY VPHP I+IQ DG
Sbjct: 28 PNAGTIKIVKQDHTLAGMLRAQLLSMPQVLFAGYKVPHPLHPYFIIKIQT-DG 79
>gi|159471075|ref|XP_001693682.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158283185|gb|EDP08936.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 115
Score = 43.9 bits (102), Expect = 0.27, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF F E HT G+++ L + FAGY +PHP + + +++Q D + +
Sbjct: 32 TFTFRSEDHTIGNLLRMQLHADKSTVFAGYRIPHPLEPVMVVKVQTNGTKSCEDAMMHAL 91
Query: 168 KELESACDRITETFNDAM 185
++L + + E F+ A+
Sbjct: 92 EDLANEYHIMLEEFDQAV 109
>gi|119570638|gb|EAW50253.1| hCG1818005, isoform CRA_c [Homo sapiens]
Length = 69
Score = 43.9 bits (102), Expect = 0.28, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F A++ K
Sbjct: 6 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDK 64
>gi|354544239|emb|CCE40962.1| hypothetical protein CPAR2_110000 [Candida parapsilosis]
Length = 122
Score = 43.9 bits (102), Expect = 0.29, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 34/78 (43%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L V FA Y V HP +RIQ +D Y D L
Sbjct: 28 PNAAIIKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRIQTEDDYSPKDAL 87
Query: 164 KKGIKELESACDRITETF 181
K + L + I + F
Sbjct: 88 KNACQALIAELQAINDKF 105
>gi|353241710|emb|CCA73506.1| related to DNA-directed RNA polymerase 13.3K chain [Piriformospora
indica DSM 11827]
Length = 138
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 81 MESKQLENSSPVWELRDNTLNVK-------PNCRTFVFEKEGHTFGSVITHILQSYPEVD 133
M S L + ++ L+D ++ PN TF K+ HT ++I L V
Sbjct: 1 MASSNLPDRQTLYVLQDGERPLEIIEDTKIPNAATFRIYKQDHTLANMIRTQLLEDKNVI 60
Query: 134 FAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
FAGY VPHP + +++Q D++ + + ++ + F + + K
Sbjct: 61 FAGYKVPHPLEPYFLLKVQTNGSLTPTDVVNTACASIIATVSQLEKRFEEQFRDK 115
>gi|119570637|gb|EAW50252.1| hCG1818005, isoform CRA_b [Homo sapiens]
Length = 79
Score = 43.9 bits (102), Expect = 0.30, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F
Sbjct: 6 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|119570636|gb|EAW50251.1| hCG1818005, isoform CRA_a [Homo sapiens]
Length = 111
Score = 43.9 bits (102), Expect = 0.30, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F
Sbjct: 6 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|432628269|ref|ZP_19864243.1| hypothetical protein A1UQ_03119 [Escherichia coli KTE77]
gi|431162249|gb|ELE62703.1| hypothetical protein A1UQ_03119 [Escherichia coli KTE77]
Length = 200
Score = 43.5 bits (101), Expect = 0.32, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 389 LLLYDEADFDLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTH 448
L+Y + D A+Q +LN++GF V +N+ L GQ Q +D I+L+S
Sbjct: 74 FLMYPVQEKDKARQITCKLNELGFDVWFDENNILPGQIIEKQINQAIDNSAAAILLLSNE 133
Query: 449 FMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSD 482
M + + + + + + IIP++ D
Sbjct: 134 DMESYIRKEVEGFLRKATVKDENYVPIIPVIIGD 167
>gi|340914788|gb|EGS18129.1| hypothetical protein CTHT_0061440 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 146
Score = 43.5 bits (101), Expect = 0.34, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ KE HT G++++ L+ P V AGY + HP ++ +R+Q + L
Sbjct: 38 NTSDFIILKEDHTIGNLLSEHLKQAPHVMMAGYKIGHPNVPEVLVRVQTDGTITPREALV 97
Query: 165 KGIKELESACDRITETFNDAMQCK 188
K+L +A ++ F + +
Sbjct: 98 NVCKQLVAAYGQLGREFQKELALR 121
>gi|71650711|ref|XP_814048.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878987|gb|EAN92197.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDG 156
PN F +KE HT +++ L V AGY VPHP ++ +R+Q DG
Sbjct: 38 PNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQTSSDG 91
>gi|115484743|ref|NP_001067515.1| Os11g0218100 [Oryza sativa Japonica Group]
gi|113644737|dbj|BAF27878.1| Os11g0218100, partial [Oryza sativa Japonica Group]
Length = 143
Score = 43.5 bits (101), Expect = 0.35, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
S+PHPAD ++ IR+Q G +ID+ K G+++L C + TF++A+
Sbjct: 80 SIPHPADNKVNIRVQTT-GDPAIDVFKDGLQDLIVMCQHVRGTFDNAV 126
>gi|430814459|emb|CCJ28306.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1377
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPA-DFQIFIRIQVKDGYDSIDI 162
PN E HT G+++ L V FAGY V HP + + +R+Q ++GY+ D
Sbjct: 1284 PNAANITVLNEDHTLGNMLRAQLLQDERVLFAGYRVSHPILEHKFVLRVQTEEGYEPRDA 1343
Query: 163 LKKGIKELESACDRITETFNDAMQCKVI 190
+ ++L ++ F + K +
Sbjct: 1344 VSNASRDLLYQLTQLRNNFEREWELKKV 1371
>gi|226470082|emb|CAX70322.1| hypotherical protein [Schistosoma japonicum]
Length = 66
Score = 43.5 bits (101), Expect = 0.36, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 121 VITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITET 180
+IT L P V FAGY PHP + +I IR+ +D+ +K+L S I E
Sbjct: 1 MITCQLLKDPRVLFAGYKAPHPLEHKIVIRVHTAHPATPVDVFVSALKDLISEISNIEEQ 60
Query: 181 FNDAMQ 186
F A +
Sbjct: 61 FRMATK 66
>gi|125576614|gb|EAZ17836.1| hypothetical protein OsJ_33384 [Oryza sativa Japonica Group]
Length = 156
Score = 43.5 bits (101), Expect = 0.37, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
S+PHPAD ++ IR+Q G +ID+ K G+++L C + TF++A+
Sbjct: 63 SIPHPADNKVNIRVQTT-GDPAIDVFKDGLQDLIVMCQHVRGTFDNAV 109
>gi|213410391|ref|XP_002175965.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
gi|212004012|gb|EEB09672.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN EKE HT +++ L V FAGY VPHP + +R+Q + +
Sbjct: 27 PNTANITIEKEDHTLANMLRTQLLYDERVVFAGYRVPHPLNHNFILRVQTTEECSPKQAI 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
K L + +++ F + K I
Sbjct: 87 IDASKSLITVLEQLKVNFTREWELKKI 113
>gi|71668504|ref|XP_821132.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886501|gb|EAN99281.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDG 156
PN F +KE HT +++ L V AGY VPHP ++ +R+Q DG
Sbjct: 38 PNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQTSSDG 91
>gi|67528118|ref|XP_661873.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|40739747|gb|EAA58937.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|259481116|tpe|CBF74353.1| TPA: DNA-directed RNA polymerase II subunit RPB11a, putative
(AFU_orthologue; AFUA_7G03860) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V FA Y VPHP + +R+Q DG
Sbjct: 28 PSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFILRVQT-DG 79
>gi|219122878|ref|XP_002181764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407040|gb|EEC46978.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 125
Score = 43.1 bits (100), Expect = 0.40, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS-IDIL 163
N TF KE HT +++ L P V FAGY PHP + +++Q + S ++L
Sbjct: 31 NAGTFRLNKEDHTVLNLLRMQLLRDPGVRFAGYIHPHPLINYMELKVQTNSSHTSPTEVL 90
Query: 164 KKGIKELESACDRITETFNDAMQ 186
I++L S D + + +AM+
Sbjct: 91 SNAIEDLGSETDHLLKEVQNAME 113
>gi|308163296|gb|EFO65646.1| RNA polymerase II subunit Rpb11 [Giardia lamblia P15]
Length = 131
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV-KDGYDSIDIL 163
N F + +T G ++ L S P+V FAG PHP + +I IR+Q G+ S I
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNSSGFLSDTIQ 89
Query: 164 KKGIKELESACDRITETF 181
+SA +ITE+
Sbjct: 90 ATPENCFQSALTKITESM 107
>gi|108864144|gb|ABA92074.2| expressed protein [Oryza sativa Japonica Group]
gi|215678562|dbj|BAG92217.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 126
Score = 43.1 bits (100), Expect = 0.41, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
S+PHPAD ++ IR+Q G +ID+ K G+++L C + TF++A+
Sbjct: 63 SIPHPADNKVNIRVQTT-GDPAIDVFKDGLQDLIVMCQHVRGTFDNAV 109
>gi|115394874|ref|XP_001213448.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193017|gb|EAU34717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1608
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++++ L V FA Y VPHP D + +R+Q DG
Sbjct: 65 PSSAIFTFNKEDHTLGNLLSSRLLQSSHVLFAAYKVPHPLDPKFLLRVQT-DG 116
>gi|12718487|emb|CAC28816.1| related to DNA-directed RNA polymerase 13.3K chain [Neurospora
crassa]
Length = 133
Score = 43.1 bits (100), Expect = 0.42, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G+++ L+ P V AGY + HP ++FIRIQ + L
Sbjct: 29 NTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTDGSITPREALV 88
Query: 165 KGIKELESACDRITETFNDAM 185
K+L + ++ F +
Sbjct: 89 GACKQLVAMYGQLGREFQKEL 109
>gi|218185462|gb|EEC67889.1| hypothetical protein OsI_35557 [Oryza sativa Indica Group]
Length = 126
Score = 43.1 bits (100), Expect = 0.42, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 138 SVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
S+PHPAD ++ IR+Q G +ID+ K G+++L C + TF++A+
Sbjct: 63 SIPHPADNKVNIRVQTT-GDPAIDVFKDGLQDLIVMCQHVRGTFDNAV 109
>gi|164426902|ref|XP_961128.2| hypothetical protein NCU03782 [Neurospora crassa OR74A]
gi|157071522|gb|EAA31892.2| predicted protein [Neurospora crassa OR74A]
Length = 141
Score = 43.1 bits (100), Expect = 0.43, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G+++ L+ P V AGY + HP ++FIRIQ + L
Sbjct: 37 NTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTDGSITPREALV 96
Query: 165 KGIKELESACDRITETFNDAMQCK 188
K+L + ++ F + +
Sbjct: 97 GACKQLVAMYGQLGREFQKELALR 120
>gi|336472984|gb|EGO61144.1| hypothetical protein NEUTE1DRAFT_58240 [Neurospora tetrasperma FGSC
2508]
gi|350293767|gb|EGZ74852.1| RBP11-like subunits of RNA polymerase [Neurospora tetrasperma FGSC
2509]
Length = 141
Score = 43.1 bits (100), Expect = 0.44, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G+++ L+ P V AGY + HP ++FIRIQ + L
Sbjct: 37 NTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTDGSITPREALV 96
Query: 165 KGIKELESACDRITETFNDAMQCK 188
K+L + ++ F + +
Sbjct: 97 GACKQLVAMYGQLGREFQKELALR 120
>gi|159116857|ref|XP_001708649.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
gi|21842229|gb|AAM77741.1|AF510649_1 RNA polymerase II subunit Rpb11 [Giardia intestinalis]
gi|157436762|gb|EDO80975.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
Length = 131
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK-DGYDSIDIL 163
N F + +T G ++ L S P+V FAG PHP + +I IR+Q G+ S I
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNPSGFLSDTIQ 89
Query: 164 KKGIKELESACDRITETF 181
+SA +ITE+
Sbjct: 90 ATPENCFQSALTKITESM 107
>gi|426357388|ref|XP_004046024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 113
Score = 43.1 bits (100), Expect = 0.47, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V FAGY VPHP + +I IR+Q Y + I L S + E F
Sbjct: 8 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECF 59
>gi|367038609|ref|XP_003649685.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL 8126]
gi|346996946|gb|AEO63349.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL 8126]
Length = 138
Score = 43.1 bits (100), Expect = 0.47, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F+ KE HT G++++ L+ P V AGY + HP ++ IR+Q + L
Sbjct: 29 NTSDFILLKEDHTLGNLLSEHLKMAPHVMMAGYKIDHPNVPEVLIRVQTDGSITPREALV 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
+ K+L + ++ F + +
Sbjct: 89 RVCKQLVAMYGQLGREFQKELTLR 112
>gi|339240153|ref|XP_003376002.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
gi|316975307|gb|EFV58753.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
Length = 101
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 19/66 (28%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+C++F EKE HT Y+VPHP + +I + I+ ++DI
Sbjct: 34 PHCQSFTIEKEDHT-------------------YNVPHPMEDRILLHIETDKSVSAVDIF 74
Query: 164 KKGIKE 169
K+G+K+
Sbjct: 75 KRGLKQ 80
>gi|146324809|ref|XP_749122.2| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus
fumigatus Af293]
gi|129556648|gb|EAL87084.2| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus Af293]
Length = 167
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G+++ L V FAGY VPHP + +R+Q DG
Sbjct: 66 PSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQT-DG 117
>gi|406606706|emb|CCH41930.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 121
Score = 43.1 bits (100), Expect = 0.51, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N FEKE HT G+++ L V FA Y V HP +RIQ +D Y + LK
Sbjct: 29 NAAIVTFEKEDHTLGNLLRAQLLKDERVVFAAYKVEHPLFANFVMRIQTEDNYTPREALK 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
+ + + + F + K
Sbjct: 89 NACYNVIAQIEALKSKFKNEWDLK 112
>gi|119482558|ref|XP_001261307.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
gi|119409462|gb|EAW19410.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
Length = 167
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G+++ L V FAGY VPHP + +R+Q DG
Sbjct: 66 PSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQT-DG 117
>gi|409048476|gb|EKM57954.1| hypothetical protein PHACADRAFT_116447 [Phanerochaete carnosa
HHB-10118-sp]
Length = 102
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
T+ E HT G+ + +L +VPHP++ I +RIQ+ D S++ L + +
Sbjct: 22 TYQIHDESHTIGNSLRWMLMK---------NVPHPSENHIHLRIQMYDNLSSLEALLEAL 72
Query: 168 KELESACDRITETFNDAM 185
+ L + CD + + ++
Sbjct: 73 ENLGNLCDTVENAYKQSL 90
>gi|336287282|gb|AEI30105.1| MYD88 [Rucervus eldi]
gi|347954680|gb|AEP33842.1| MyD88 [Bubalus bubalis]
Length = 296
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 26/220 (11%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ LA+ MD + E D ++ +DW + R ++ L L + R D
Sbjct: 46 DWTVLAEAMDFEYLEIQQLEKYSDPTSRLLDDWQR-----RPGASVGRLLELLAKLGRDD 100
Query: 332 VYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCG 382
V + IEEDC Y E +SI + ++D + ITI D LG
Sbjct: 101 VLMELGPSIEEDCQKYILKQQQEASEKPLQVDSIDSSITRINDMAGITIRDDP---LGQK 157
Query: 383 LAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
+DA + Y +D + + QL + + +C D L G S ++++ RC
Sbjct: 158 PECFDAFICYCPSDIEFVHEMIRQLEQTNYQLKLCVSDRDVLPGTCVWSIASELIEKRCR 217
Query: 440 CVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
++V++S ++ + T++A + + H K +IPI
Sbjct: 218 RMVVVVSDEYLQSKECDFQTKFALS--LSPGAHQKRLIPI 255
>gi|158602402|gb|ABW74617.1| Myd88 [Sus scrofa]
gi|158602408|gb|ABW74618.1| Myd88 [Sus scrofa]
Length = 293
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 275 DYRGLADLMD--------IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLEC 326
D+ GLA+ M+ ++ P+P + + +DW R ++ L L
Sbjct: 46 DWTGLAEEMNFEYLEIRRLETHPDPT-----RSLLDDWQ-----GRPGASVGRLLELLAK 95
Query: 327 IDRFDVYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSL 377
+ R DV + IEEDC Y E +S+ + M S ITI D
Sbjct: 96 LGRDDVLVELGPSIEEDCRKYILKQQQEAAEKPLQVDSVDSSIPWM---SGITIRDDP-- 150
Query: 378 NLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVM 435
LG H+DA + Y +D ++ QL + + +C D L G S +++
Sbjct: 151 -LGQMPEHFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELI 209
Query: 436 D-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
+ RC ++V++S ++ + T++A + + H K +IP+
Sbjct: 210 EKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGAHQKRLIPV 252
>gi|292630835|sp|A2TF48.2|MYD88_PIG RecName: Full=Myeloid differentiation primary response protein
MyD88
gi|156181164|gb|ABU54860.1| myeloid differentiation primary response protein 88 [Sus scrofa]
Length = 293
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 275 DYRGLADLMD--------IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLEC 326
D+ GLA+ M+ ++ P+P + + +DW R ++ L L
Sbjct: 46 DWTGLAEEMNFEYLEIRRLETHPDPT-----RSLLDDWQ-----GRPGASVGRLLELLAK 95
Query: 327 IDRFDVYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSL 377
+ R DV + IEEDC Y E +S+ + M S ITI D
Sbjct: 96 LGRDDVLVELGPSIEEDCRKYILKQQQEAAEKPLQVDSVDSSIPWM---SGITIRDDP-- 150
Query: 378 NLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVM 435
LG H+DA + Y +D ++ QL + + +C D L G S +++
Sbjct: 151 -LGQMPEHFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELI 209
Query: 436 D-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
+ RC ++V++S ++ + T++A + + H K +IP+
Sbjct: 210 EKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGAHQKRLIPV 252
>gi|399217331|emb|CCF74218.1| unnamed protein product [Babesia microti strain RI]
Length = 116
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154
C TF+ E HT G++I L V F GY +PHP + + +R++ +
Sbjct: 37 CGTFIIHLEDHTMGALIKSQLNLDENVTFVGYRIPHPLESLLELRVKTR 85
>gi|390353911|ref|XP_003728218.1| PREDICTED: uncharacterized protein LOC100892549 isoform 1
[Strongylocentrotus purpuratus]
gi|390353913|ref|XP_003728219.1| PREDICTED: uncharacterized protein LOC100892549 isoform 2
[Strongylocentrotus purpuratus]
Length = 907
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 385 HYDALLLYDEADFDLAKQFNTQLNKMG--FTVCDKDNSFLTGQFEHSAFIQVMDRCTCVI 442
HYD + Y AD D A +QL K+ + TG +D +C+I
Sbjct: 371 HYDVFVSYCHADADQATPIVSQLQKLNPELKIFYDIQELKTGHEWQRTLYHSIDGTSCMI 430
Query: 443 VLMSTHFMNNSLLHSLTQYAEAKHIDH-TIHSKIIPILCSD 482
L+S +++ +++ A+ KH+ H T+H +IP+ SD
Sbjct: 431 ALISPNYLKSAVCMEEYSLAQTKHLSHDTLH--LIPVCISD 469
>gi|185133066|ref|NP_001117893.1| myeloid differentiation primary response protein MyD88
[Oncorhynchus mykiss]
gi|123905093|sp|Q4LBC6.1|MYD88_ONCMY RecName: Full=Myeloid differentiation primary response protein
MyD88
gi|68687836|emb|CAI48087.1| myeloid differentiation factor 88 [Oncorhynchus mykiss]
Length = 282
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 21/235 (8%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMDIKAPPNPNCED 295
S+D IP+ A+ R+ L ++P N D+ +A+ M N ED
Sbjct: 4 SLDLWNIPLRALNINVRKRLG-------LFLNPRNTVASDWMSVAENMGFSYLEIKNYED 56
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTRLG 353
+ + L R+ + + L+ + R DV +D IEEDC Y
Sbjct: 57 CQDPTRKIYRTGKPLSRA--QVGKLVSILDNVTRKDVVEDLRVLIEEDCKRYIERQNEPP 114
Query: 354 NSISKNGACM---DDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKM 410
+ + +C+ + IT+ED G +DA + Y ++DFD + QL +
Sbjct: 115 VQVPEVDSCVPRTPERQGITLEDDPE---GGIPELFDAFICYCQSDFDFVHEMIQQLEQT 171
Query: 411 G--FTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 172 DHKLKLCVFDRDALPGSCVWTITSELIEKRCKRMVVVISDEYLDSDACDFQTKFA 226
>gi|255953613|ref|XP_002567559.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589270|emb|CAP95410.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 128
Score = 42.7 bits (99), Expect = 0.62, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G+++ L V FA Y VPHP + +R+Q DG
Sbjct: 28 PSAAIFTFHKEDHTLGNMLRQRLLKTAHVIFAAYRVPHPLTPEFQLRVQT-DG 79
>gi|62177176|ref|NP_001014404.1| myeloid differentiation primary response protein MyD88 [Bos taurus]
gi|75040076|sp|Q599T9.1|MYD88_BOVIN RecName: Full=Myeloid differentiation primary response protein
MyD88
gi|61974822|emb|CAH68521.1| myeloid differentiation protein [Bos taurus]
gi|74267958|gb|AAI02852.1| Myeloid differentiation primary response gene (88) [Bos taurus]
gi|296475015|tpg|DAA17130.1| TPA: myeloid differentiation primary response gene 88 [Bos taurus]
Length = 296
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 26/220 (11%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ LA+ MD + E D ++ +DW + R ++ L L + R D
Sbjct: 46 DWTVLAEAMDFEYLEIQQLEKYADPTSRLLDDWQR-----RPGASVGRLLELLAKLGRDD 100
Query: 332 VYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCG 382
V + IEEDC Y E +SI + ++D + ITI D LG
Sbjct: 101 VLMELGPSIEEDCQKYILKQQQEASEKPLQVDSIDSSITRINDMAGITIRDDP---LGQK 157
Query: 383 LAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
+DA + Y +D + + QL + + +C D L G S ++++ RC
Sbjct: 158 PECFDAFICYCPSDIEFVHEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 217
Query: 440 CVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
++V++S ++ + T++A + + H K +IPI
Sbjct: 218 RMVVVVSDEYLQSKECDFQTKFALS--LSPGAHQKRLIPI 255
>gi|305663458|ref|YP_003859746.1| RNA polymerase dimerisation [Ignisphaera aggregans DSM 17230]
gi|304378027|gb|ADM27866.1| RNA polymerase dimerisation [Ignisphaera aggregans DSM 17230]
Length = 108
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
R +++++ H+ ++IT I S P V +A Y + HP I I D ++ILK+
Sbjct: 15 LRFILYDEDKHSLPNLITKIALSKPSVTYAAYILQHPITSYPEIVIMTDGSRDPLEILKE 74
Query: 166 GIKELESACDRITETFNDAM 185
I+++++ + + N+A+
Sbjct: 75 VIEDIKNMAKQFLASLNEAL 94
>gi|440494570|gb|ELQ76940.1| RNA polymerase, subunit L [Trachipleistophora hominis]
Length = 103
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E HT G++I + S P F+ Y V HP D ++ +++ + + ++
Sbjct: 18 PNTVELHINGESHTLGNLIAEKILSDPRCTFSAYKVNHPLDEEVDLKVSAQKDTPVLTLI 77
Query: 164 KKGIKELE 171
K +K LE
Sbjct: 78 KDNLKSLE 85
>gi|429964494|gb|ELA46492.1| hypothetical protein VCUG_02036 [Vavraia culicis 'floridensis']
Length = 103
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E HT G++I + S P F+ Y V HP + ++ +++ + + ++
Sbjct: 18 PNTIELHINGESHTLGNMIAEKILSDPRCTFSAYKVSHPLNEEVDLKVSAEKDTPVLTLI 77
Query: 164 KKGIKELESACDRI 177
K+ +K LE D +
Sbjct: 78 KENLKGLEEDLDSL 91
>gi|403359539|gb|EJY79434.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 138
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N T E+E HT G+ + L V F+GY +PHP + ++ I++Q + + ++
Sbjct: 18 NFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQTNGEINPAEAVQ 77
Query: 165 KGIKELESACDRITETFNDAMQCKVILKLTLLVIQKASKNLRVLVIGSQKHS 216
+ ++I +F A+ I ++ + +S ++ +GS +S
Sbjct: 78 NACLNTHAHVEQIKTSFQMAVNAFKIDQMHITRQAPSSGSMHGKNMGSSDYS 129
>gi|153792387|ref|NP_001093393.1| myeloid differentiation primary response protein MyD88 [Sus scrofa]
gi|124108029|gb|ABM90642.1| myeloid differentiation primary response protein 88 [Sus scrofa]
Length = 293
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 275 DYRGLADLMD--------IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLEC 326
D+ GLA+ M+ ++ P+P + + +DW R ++ L L
Sbjct: 46 DWTGLAEEMNFEYLEIRRLETHPDPT-----RSLLDDWQ-----GRPGASVGRLLELLAK 95
Query: 327 IDRFDVYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSL 377
+ R DV + IEEDC Y E +S+ + M S ITI D
Sbjct: 96 LGRDDVLVELGPSIEEDCRKYILKQQQEAAEKPLQVDSVDSSIPWM---SGITIRDDP-- 150
Query: 378 NLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVM 435
LG H+DA + Y +D ++ QL + + +C D L G S +++
Sbjct: 151 -LGQMPEHFDAFICYCPSDTQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELI 209
Query: 436 D-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
+ RC ++V++S ++ + T++A + + H K +IP+
Sbjct: 210 EKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGAHQKRLIPV 252
>gi|348556757|ref|XP_003464187.1| PREDICTED: myeloid differentiation primary response protein
MyD88-like, partial [Cavia porcellus]
Length = 294
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 312 RSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY-------------ENTRLGNSISK 358
R ++ L L +DR DV + IEEDC Y + R+ +S+ +
Sbjct: 79 RPGASVGQLLELLAKLDRNDVLLELRSSIEEDCQKYILKQQQEESEKPLQVARVDSSVPR 138
Query: 359 NGACMDDP-SVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVC 415
++P + T++D LG ++DA + Y +D ++ QL + + +C
Sbjct: 139 T----EEPFGITTLDD----PLGQAPEYFDAFICYCPSDIQFVQEMIRQLEQTDYRLKLC 190
Query: 416 DKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK 474
D L G S ++++ RC ++V++S ++ + T++A + + +H K
Sbjct: 191 VSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGVHQK 248
Query: 475 -IIPI 478
+IPI
Sbjct: 249 RLIPI 253
>gi|320582021|gb|EFW96240.1| RNA polymerase II core subunit [Ogataea parapolymorpha DL-1]
Length = 107
Score = 42.0 bits (97), Expect = 0.94, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+++ L + P+V F Y V HP +R+Q ++GY LK L S
Sbjct: 22 EDHTLGNLLKQELANDPQVLFVAYKVEHPLFANFVMRLQTEEGYKPRIALKNACTRLISK 81
Query: 174 CDRITETFNDAMQCKVIL 191
+ + F + K +L
Sbjct: 82 LGILNDKFKREWELKALL 99
>gi|401412023|ref|XP_003885459.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
gi|325119878|emb|CBZ55431.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
Length = 208
Score = 42.0 bits (97), Expect = 0.95, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
P C TFVF E +T G V+ + L + V F G PHP + +I +RIQ
Sbjct: 35 PLCGTFVFHLEDYTIGYVLRNDLLNDARVKFVGLRQPHPLEPKIELRIQ 83
>gi|31088113|dbj|BAC76897.1| Myd88 [Cavia porcellus]
Length = 296
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 28/185 (15%)
Query: 312 RSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY-------------ENTRLGNSISK 358
R ++ L L +DR DV + IEEDC Y + R+ +S+ +
Sbjct: 81 RPGASVGQLLELLAKLDRNDVLLELRSSIEEDCQKYILKQQQEESEKPLQVARVDSSVPR 140
Query: 359 NGACMDDP-SVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVC 415
++P + T++D LG ++DA + Y +D ++ QL + + +C
Sbjct: 141 T----EEPFGITTLDD----PLGQAPEYFDAFICYCPSDIQFVQEMIRQLEQTDYRLKLC 192
Query: 416 DKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK 474
D L G S ++++ RC ++V++S ++ + T++A + + +H K
Sbjct: 193 VSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGVHQK 250
Query: 475 -IIPI 478
+IPI
Sbjct: 251 RLIPI 255
>gi|353238406|emb|CCA70353.1| hypothetical protein PIIN_04292 [Piriformospora indica DSM 11827]
Length = 97
Score = 42.0 bits (97), Expect = 0.96, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
++ E HT G+ + ++ + PHP++ +I IRIQ+ D S+D L + +
Sbjct: 18 SYAIADETHTLGNALRWMIMK---------NAPHPSENKIHIRIQMYDNQSSLDALIEAL 68
Query: 168 KELESACDRITETFNDAMQ 186
L+ C I E + DA +
Sbjct: 69 DALDDVCTVIDEKYVDAAK 87
>gi|169775525|ref|XP_001822230.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus oryzae
RIB40]
gi|238495811|ref|XP_002379141.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|83770093|dbj|BAE60228.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694021|gb|EED50365.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|391874196|gb|EIT83118.1| RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 129
Score = 42.0 bits (97), Expect = 1.0, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V FA Y VPHP + +R+Q DG
Sbjct: 28 PSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFELRVQT-DG 79
>gi|399949657|gb|AFP65315.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 100
Score = 42.0 bits (97), Expect = 1.0, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPAD 144
N F E HT G+V+ ++ PEV F GY+VPHP++
Sbjct: 13 NFNLVTFYNEDHTLGNVLRFLIAGNPEVKFVGYNVPHPSE 52
>gi|296413724|ref|XP_002836559.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630386|emb|CAZ80750.1| unnamed protein product [Tuber melanosporum]
Length = 119
Score = 42.0 bits (97), Expect = 1.1, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKD 155
+PN F F KE HT G+++ L V F+ Y VPHP + +R+Q +
Sbjct: 27 QPNAAIFTFNKEDHTLGNLLRATLLHNEHVVFSAYKVPHPLFPKFELRVQTDE 79
>gi|298675261|ref|YP_003727011.1| RNA polymerase dimerization [Methanohalobium evestigatum Z-7303]
gi|298288249|gb|ADI74215.1| RNA polymerase dimerization [Methanohalobium evestigatum Z-7303]
Length = 93
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 111 FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
+ E HT +V+ IL V+ A Y + H + + ++ DG D I ++K+ + +L
Sbjct: 17 IQGEDHTLLNVLKSILLEDSRVEIASYDMKHVNVSEPILYVKT-DGTDQITVIKEALSKL 75
Query: 171 ESACDRITETFNDAMQC 187
S CD E F++A++
Sbjct: 76 ISRCDEFNEVFSEAVKA 92
>gi|330040637|ref|XP_003239979.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
gi|327206905|gb|AEA39081.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
Length = 101
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F + E HT GS+I L +P+V F+GY HP + IF++I I +L
Sbjct: 22 NYGSFRIKNEDHTIGSLIQKQLLKHPDVIFSGYKKFHPLEKYIFLKIITNGHKTPIQVLD 81
Query: 165 KGIKEL 170
+K+L
Sbjct: 82 SVLKDL 87
>gi|315045778|ref|XP_003172264.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
gi|311342650|gb|EFR01853.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
Length = 161
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V F+ Y +PHP ++ +R+Q DG
Sbjct: 61 PSTAIFTFNKEDHTLGNLIRSRLFQNQHVLFSAYKIPHPLVHKVLLRVQT-DG 112
>gi|410971699|ref|XP_003992302.1| PREDICTED: myeloid differentiation primary response protein MyD88
[Felis catus]
Length = 296
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 295 DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGN 354
D M K+ +DW R ++ L L + R DV + IEEDC Y +
Sbjct: 69 DPMGKLLDDWQ-----GRPGASVGRLLELLTKLGRDDVLVELGPSIEEDCQKYILKQQQE 123
Query: 355 SISK--NGACMD--DPSVITIEDVKSLN--LGCGLAHYDALLLYDEADFDLAKQFNTQLN 408
K A +D DP + + +L+ LG +DA + Y +D ++ QL
Sbjct: 124 ESEKPLQVAAVDSSDPRTSELAGITTLDDPLGQMPERFDAFICYCPSDIQFVQEMIRQLE 183
Query: 409 KMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYAEAK 465
+ + +C D L G S ++++ RC ++V++S ++ + T++A +
Sbjct: 184 QTDYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALS- 242
Query: 466 HIDHTIHSK-IIPI 478
+ H K +IPI
Sbjct: 243 -LSPGAHQKRLIPI 255
>gi|409076370|gb|EKM76742.1| hypothetical protein AGABI1DRAFT_131035 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 103
Score = 41.6 bits (96), Expect = 1.3, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF E HT G+ + +L +VPHP++ I +RIQ+ D S D L +
Sbjct: 23 TFQIHDESHTMGNALRWMLMK---------NVPHPSENVINVRIQMYDNISSFDALISAL 73
Query: 168 KELESACDRITETFNDAMQ 186
L+ C+ I + + ++++
Sbjct: 74 DNLDHLCESIEDAYLESLR 92
>gi|341819279|gb|AEK87127.1| myloid differentiation factor 88 [Oreochromis aureus]
Length = 288
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 42/246 (17%)
Query: 238 MDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLM--------DIKAP 288
+D KIP+ A+ R+ L ++P++ D+ LA+ M + + P
Sbjct: 8 VDLEKIPLVALNMSVRKKLG-------LYLNPKHTVAADWMALAEAMGFNYLEIKNYEVP 60
Query: 289 PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY- 347
NP C + EDW ++ T D SV L L +DR D+ +D I+ED Y
Sbjct: 61 KNPTC-----TVLEDW-QARTTDTSV---GKLLSMLSELDREDIVEDLRPLIDEDVRKYC 111
Query: 348 ----ENTRLGNSISKNGACM---DDPSVITIEDVKSLNLGCGLAH-YDALLLYDEADFDL 399
+ + + +C+ + S IT++D G+ +DA + Y ++DF
Sbjct: 112 ANLKKKAEPPLQVPEVDSCVPRTPERSGITVDDDPE-----GVPEMFDAFICYCQSDFAF 166
Query: 400 AKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLH 456
+ +L + + +C D L G + ++++ RC ++V++S ++++
Sbjct: 167 VHEMIRELEQTDYKLKLCVFDRDVLPGSCVWTITSELIEKRCKRMVVVISDEYLDSDACD 226
Query: 457 SLTQYA 462
T++A
Sbjct: 227 FQTKFA 232
>gi|403367466|gb|EJY83556.1| DNA-directed RNA polymerase II subunit RPB11 [Oxytricha trifallax]
Length = 138
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N T E+E HT G+ + L V F+GY +PHP + ++ I++Q + + ++
Sbjct: 18 NFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQTNGEINPAEAVQ 77
Query: 165 KGIKELESACDRITETFNDAMQC 187
+ ++I +F A+
Sbjct: 78 NACLNTHAHVEQIKTSFQMAVNA 100
>gi|402471533|gb|EJW05250.1| hypothetical protein EDEG_00715 [Edhazardia aedis USNM 41457]
Length = 107
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGY---DSID-ILKKGIKE 169
E HT + + +++ V+ GYS+PHP++ + ++IQ+K + +SID I+ KG +
Sbjct: 25 EDHTLLNPLRYMITKNDHVELVGYSIPHPSERKAQLKIQLKKAFKYNNSIDKIIYKGADD 84
Query: 170 LESACDRI 177
L+ + I
Sbjct: 85 LDKVTEHI 92
>gi|167377825|ref|XP_001734557.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|167384275|ref|XP_001736882.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|165900590|gb|EDR26886.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
gi|165903881|gb|EDR29278.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
Length = 112
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
F F KE HT G+++ +L P V FAGY PHP ++ I + I+
Sbjct: 30 FTFVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYIIEMTIR 73
>gi|169264972|dbj|BAG12314.1| myeloid differentiation primary response gene 88 [Sus scrofa]
Length = 293
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 275 DYRGLADLMD--------IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLEC 326
D+ GLA+ M+ ++ P+P + + +DW R ++ L L
Sbjct: 46 DWTGLAEEMNFEYLEIRRLETHPDPT-----RSLLDDWQ-----GRPGASVGRLLELLAK 95
Query: 327 IDRFDVYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSL 377
+ R DV + IEEDC Y E +S+ + M S ITI D
Sbjct: 96 LGRDDVLVELGPSIEEDCRKYILKQQQEAAEKPLQVDSVDSSIPWM---SGITIRDDP-- 150
Query: 378 NLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVM 435
LG H+DA + Y +D ++ QL + + +C D L G S +++
Sbjct: 151 -LGQMPEHFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELI 209
Query: 436 D-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
+ RC ++ ++S ++ + T++A + + H K +IP+
Sbjct: 210 EKRCRRMVAVVSDDYLQSKECDFQTKFALS--LSPGAHQKRLIPV 252
>gi|11497823|ref|NP_069045.1| DNA-directed RNA polymerase subunit L [Archaeoglobus fulgidus DSM
4304]
gi|11387069|sp|O30032.1|RPOL_ARCFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|2650437|gb|AAB91026.1| DNA-directed RNA polymerase, subunit L (rpoL) [Archaeoglobus
fulgidus DSM 4304]
Length = 86
Score = 41.2 bits (95), Expect = 1.7, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP--ADFQIFIRIQVKDGYDSIDILKKG 166
V + EGHT+ +++ H L +V A Y++PHP + +I+I+ G D ++ +K+
Sbjct: 15 LVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTS---GVDPLEAVKRA 71
Query: 167 IKELESACDRITE 179
+++ +AC+ + E
Sbjct: 72 NEKIIAACNTLLE 84
>gi|358373008|dbj|GAA89608.1| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus kawachii
IFO 4308]
Length = 161
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ F F KE HT G++I L V FA Y VPHP +R+Q D +
Sbjct: 60 PSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQTDGDVSPKDAV 119
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKLT 194
EL ++ F + + ++ T
Sbjct: 120 IAACHELVRDLGILSREFTKEYELRKMVGAT 150
>gi|448520186|ref|XP_003868244.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis Co 90-125]
gi|380352583|emb|CCG22810.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis]
Length = 122
Score = 41.2 bits (95), Expect = 1.9, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN E+E HT +++ L V FA Y V HP +RIQ +D Y + L
Sbjct: 28 PNAAIVKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRIQTEDNYSPKEAL 87
Query: 164 KKGIKELESACDRITETF 181
K L + I+ F
Sbjct: 88 KNACNALIAELRDISNKF 105
>gi|260808385|ref|XP_002598988.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
gi|229284263|gb|EEN55000.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
Length = 117
Score = 41.2 bits (95), Expect = 1.9, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P+V FAGY VPHP + + +R+Q Y + I +L S + E F A++ K
Sbjct: 55 PQVIFAGYKVPHPLEHKFVLRLQTTPDYSPQEAFTNAITDLISEVSLLEERFKVAVREK 113
>gi|417278070|ref|ZP_12065388.1| TIR domain protein [Escherichia coli 3.2303]
gi|425273801|ref|ZP_18665209.1| TIR domain protein [Escherichia coli TW15901]
gi|386239209|gb|EII76141.1| TIR domain protein [Escherichia coli 3.2303]
gi|408192436|gb|EKI18010.1| TIR domain protein [Escherichia coli TW15901]
Length = 125
Score = 40.8 bits (94), Expect = 2.0, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 391 LYDEADFDLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFM 450
+Y + D A+Q +LN++GF V +N+ L GQ Q +D I+L+S M
Sbjct: 1 MYPVQEKDKARQITCKLNELGFDVWFDENNILPGQIIEKQINQAIDNSAAAILLLSNEDM 60
Query: 451 NNSLLHSLTQYAEAKHIDHTIHSKIIPILCSD 482
+ + + + + + IIP++ D
Sbjct: 61 ESYIRKEVEGFLRKATVKDENYVPIIPVIIGD 92
>gi|429217339|ref|YP_007175329.1| DNA-directed RNA polymerase subunit L [Caldisphaera lagunensis DSM
15908]
gi|429133868|gb|AFZ70880.1| DNA-directed RNA polymerase, subunit L [Caldisphaera lagunensis DSM
15908]
Length = 102
Score = 40.8 bits (94), Expect = 2.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELE 171
E E HT G++++ +LQ+ V+ A Y VPHP + ++ I + + + D D L + +++++
Sbjct: 20 EGEDHTIGNLLSTVLQTLKGVNIAYYEVPHPLENRLIIYMDLDENIDPKDKLIEALQKIK 79
>gi|145247839|ref|XP_001396168.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus niger CBS
513.88]
gi|134080912|emb|CAK46429.1| unnamed protein product [Aspergillus niger]
Length = 129
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDG 156
P+ F F KE HT G++I L V FA Y VPHP +R+Q DG
Sbjct: 28 PSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQT-DG 79
>gi|390937790|ref|YP_006401528.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM 16532]
gi|390190897|gb|AFL65953.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM 16532]
Length = 93
Score = 40.8 bits (94), Expect = 2.3, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 107 RTFVFE--KEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGY------- 157
R V E E HT G+++ +P V++A Y VPHP I VK GY
Sbjct: 11 RELVLEIYGEDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVESILR 70
Query: 158 DSIDILKKGIKEL 170
D +D LK + EL
Sbjct: 71 DIVDGLKNSLAEL 83
>gi|308798741|ref|XP_003074150.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
gi|116000322|emb|CAL50002.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
Length = 230
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 126 LQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
L P+V FAGY PHP D ++ +++ + L+ + L + I + F D +
Sbjct: 21 LHKNPDVVFAGYKNPHPTDHRVILKVHTNANTTPVQALRDAVTNLRAEVSDIAQQFADEI 80
Query: 186 QC 187
Sbjct: 81 NA 82
>gi|405967595|gb|EKC32736.1| DNA-directed RNA polymerase II subunit RPB11-a [Crassostrea gigas]
Length = 156
Score = 40.8 bits (94), Expect = 2.4, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 38/123 (30%)
Query: 104 PNCRTFVFEKEGHTFGSVITH--------------------------------------I 125
PN F KE HT G++IT
Sbjct: 28 PNAAIFTVNKEDHTLGNMITARTDTVRTASRANGPRANENQSEQRQGQTRFRANEQPIIQ 87
Query: 126 LQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
L+ P+V FAGY PHP + + +R+Q Y + + I +L S + E F +A+
Sbjct: 88 LRKDPQVLFAGYKNPHPLEHKFVLRVQTTSDYSPQEAITHAITDLISEFSLLEERFKEAV 147
Query: 186 QCK 188
+ K
Sbjct: 148 REK 150
>gi|336274887|ref|XP_003352197.1| hypothetical protein SMAC_02632 [Sordaria macrospora k-hell]
Length = 140
Score = 40.4 bits (93), Expect = 2.7, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 81 MESKQLENSSP----VWELRDNTLNVK-------PNCRTFVFEKEGHTFGSVITHILQSY 129
+ S Q +NS P ++ L+D ++ N F KE HT +++ L+
Sbjct: 3 VSSNQKQNSEPNRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQA 62
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
P V AGY + HP ++ IRIQ + L K+L + ++ F + +
Sbjct: 63 PHVLMAGYKIAHPNVPEVMIRIQTDGSITPREALVGACKQLVAMYGQLGREFQKELALR 121
>gi|302831972|ref|XP_002947551.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
gi|300267415|gb|EFJ51599.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
Length = 120
Score = 40.4 bits (93), Expect = 3.0, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF F E HT G+++ L S + FAGY +PHP + + +++Q + + +
Sbjct: 32 TFSFRSEDHTMGNLLRMQLHSDKAMVFAGYRIPHPLEPVMVVKVQTNGTKSPEEAMVHAL 91
Query: 168 KELES 172
++L S
Sbjct: 92 QDLAS 96
>gi|253744474|gb|EET00682.1| RNA polymerase II subunit Rpb11 [Giardia intestinalis ATCC 50581]
Length = 131
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F + +T G ++ L + P+V FAG PHP + +I IR+Q D ++
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLAMPQVTFAGMKTPHPLESKIVIRLQTNASAFLSDTIQ 89
Query: 165 KGIKE-LESACDRITETF 181
+ +SA ++TE+
Sbjct: 90 ATPENCFQSALTKVTESM 107
>gi|82468375|gb|ABB76627.1| MyD88 [Azumapecten farreri]
Length = 367
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 98/245 (40%), Gaps = 30/245 (12%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ G A+L++ P N + ++M W+ + + V N+ +FL LE RFD
Sbjct: 48 DWCGYAELLNFSQPEIENMKRHKSPTEEMLHLWSTRNDPEPKVGNLISFLCKLE---RFD 104
Query: 332 VYDDCIGFIEEDCLYYENTRLGNSISKNGACMDDP-----SVITIEDVKSLNLGC-GLAH 385
V DC IE D + +L + +P S + E ++G +
Sbjct: 105 VISDCRTMIERDVEKWRQNQLSLQKINDDPTFREPQSRPRSPQSEETQTRADVGSKDEIY 164
Query: 386 YDALLLY--DEAD-FDLAKQFNTQLN--KMGFTVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
YD ++Y D +D + KQ + L + F + L G HS +++ +C
Sbjct: 165 YDCFVIYNPDASDQLEFVKQMSRILEGPEYNFRLFIPWRDDLVGTAMHSVSAAIIEKKCR 224
Query: 440 CVIVLMSTHFMNNS-------LLHSLTQYAEAKHIDHTIHSKIIP-----ILCSDDYFSV 487
IV++S F N+ H+L+ A K + + I P + +++V
Sbjct: 225 RCIVVLSKSFNNSPAADFQLKFAHALSPGARQKRVIPVLIENIEPPSILNFVAPAPFYNV 284
Query: 488 GFLQY 492
G +
Sbjct: 285 GIRDW 289
>gi|452755181|gb|AGG10812.1| myeloid differentiation factor 88 c [Mytilus galloprovincialis]
Length = 482
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 127/312 (40%), Gaps = 48/312 (15%)
Query: 240 YIKIPIEAIRPKTRQVLN---DKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDL 296
+ I ++A+RP R+ + DK ++ + + D+RGLA+++ E
Sbjct: 22 FTSISLQALRPSARRQIAMHMDK--ELTTINADNGMLCDWRGLAEIVGFSNLEISKMERT 79
Query: 297 MK---KMFEDWTKSSTLDRSVFNIATFLHFLECI---DRFDVYDDCIGFIEED------- 343
K ++ +W +S D +T H C+ DR DV D ++E D
Sbjct: 80 GKPTEELLYEWETNSNCD------STLGHLWSCLQQLDRKDVLSDSKSYVERDAQTFIDQ 133
Query: 344 --------CLYYENTRLGNSISKNGACM-DDPSVITIEDVKSLNLGCGLAHYDALLLYDE 394
C E T ++ N + D+ +TI D ++ + YDA + Y+
Sbjct: 134 QERLKNDYCPLQEPTISSTTVPANRDHLCDETRYLTIHDSENPD---NPIIYDAFVCYNP 190
Query: 395 ----ADFDLAKQFNTQL-NKMGFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTH 448
D +Q QL +K G +C L G ++ +++ RC +++++S
Sbjct: 191 DAEGKDGYFVQQCIKQLEHKHGLKLCIPIRDCLAGGAKYMMDAELIKARCRRMVIVISHE 250
Query: 449 FMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASN--ME 506
F+ + ++A++ ++IP+L D L++ + + Y ME
Sbjct: 251 FLLSQDCDFQVKFAQS-LAPGARKKRLIPVLLEDRLKIPDILRH---VTICDYTKPDLME 306
Query: 507 QFWDRLYYSLKG 518
FWDRL S++
Sbjct: 307 WFWDRLASSIRA 318
>gi|19173564|ref|NP_597367.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|19170770|emb|CAD26544.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|449329222|gb|AGE95496.1| DNA-directed RNA polymerase II [Encephalitozoon cuniculi]
Length = 96
Score = 40.4 bits (93), Expect = 3.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 96 RDNTLNVKPNCRTFV---FEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
R T+N N R + E E HT G++++ L F+ Y V HPAD +F+R+
Sbjct: 5 RKVTMNYVGNTRNTIELRIEDETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLRLT 64
Query: 153 VKDGYDSIDILKKGIKELE 171
D+L + +K +E
Sbjct: 65 ADRDCQVRDLLLETLKRVE 83
>gi|387593600|gb|EIJ88624.1| hypothetical protein NEQG_01314 [Nematocida parisii ERTm3]
gi|387597255|gb|EIJ94875.1| hypothetical protein NEPG_00400 [Nematocida parisii ERTm1]
Length = 97
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS-IDILKKGIKELES 172
E HT G+ + LQ +V F+ Y +PHP + +++ V+ D I+ +K + L S
Sbjct: 27 EDHTIGNALASELQKEKDVSFSAYKIPHPLQNILKVKVVVEKSEDRPIEFVKASLDHLIS 86
Query: 173 ACD 175
CD
Sbjct: 87 DCD 89
>gi|296241786|ref|YP_003649273.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
gi|296094370|gb|ADG90321.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
Length = 92
Score = 40.0 bits (92), Expect = 3.6, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+++ +P+V +A Y VPHP +I I V++G D ++L +E+
Sbjct: 20 EDHTLGNLLMKEALRHPKVVYASYRVPHPLREEIEFVITVQEGTDVGEVL----REIVGG 75
Query: 174 CDRITETFNDAMQCKV 189
R F A++ +
Sbjct: 76 IKRELSDFKSAVEASI 91
>gi|57641102|ref|YP_183580.1| DNA-directed RNA polymerase subunit L [Thermococcus kodakarensis
KOD1]
gi|73917889|sp|Q5JE88.1|RPOL_PYRKO RecName: Full=DNA-directed RNA polymerase subunit L
gi|57159426|dbj|BAD85356.1| DNA-directed RNA polymerase, subunit L [Thermococcus kodakarensis
KOD1]
Length = 94
Score = 40.0 bits (92), Expect = 4.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
+R + + N F E E HTF +++T L V FAGY++ HP
Sbjct: 1 MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHP 48
>gi|218884727|ref|YP_002429109.1| DNA-directed RNA polymerase subunit L [Desulfurococcus
kamchatkensis 1221n]
gi|218766343|gb|ACL11742.1| DNA-directed RNA polymerase, subunit L [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 40.0 bits (92), Expect = 4.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 107 RTFVFE--KEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
R V E E HT G+++ +P V++A Y VPHP I VK GY IL+
Sbjct: 11 RELVLEIYDEDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVESILR 70
Query: 165 ---KGIKELESACDRITE 179
G+K + R+ E
Sbjct: 71 DIVNGLKNSLAELRRLVE 88
>gi|335345786|gb|AEH41473.1| DNA-directed RNA polymerase II subunit RPB11a [Endocarpon pusillum]
Length = 124
Score = 40.0 bits (92), Expect = 4.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 99 TLNVK-PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGY 157
TL+ + PN F F KE HT G+++ L V FA Y VPHP +R+Q
Sbjct: 23 TLDTRMPNTCIFKFNKEDHTLGNLLRARLLQDRRVTFAAYKVPHPLFPTFELRVQTDGSL 82
Query: 158 DSIDILKKGIKELESACDRITETFNDAMQCK 188
+ L + ++ S + ++ F + +
Sbjct: 83 SPKEALLQACRDSVSDLNTLSREFTKEYELR 113
>gi|409048064|gb|EKM57542.1| hypothetical protein PHACADRAFT_251231 [Phanerochaete carnosa
HHB-10118-sp]
Length = 141
Score = 39.7 bits (91), Expect = 4.5, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ 152
PN TF KE HT G+++ L FAGY VPHP +++Q
Sbjct: 28 PNATTFKIVKEDHTLGNLLRAELLKDSRCLFAGYKVPHPLHPYFLLKVQ 76
>gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
Length = 736
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC F+ KE HT G++++ L+ P V A Y + HP ++ +R+Q + L
Sbjct: 3 NCSDFLMLKEDHTLGNLLSVYLKMAPHVMMAAYKIGHPNVPEVQLRVQTDGTITPREALM 62
Query: 165 KGIKELESACDRITETFNDAMQCK 188
K+L + ++ F + +
Sbjct: 63 TVCKQLVAMYGQLGREFQKELALR 86
>gi|380092277|emb|CCC10053.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 131
Score = 39.7 bits (91), Expect = 5.1, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT +++ L+ P V AGY + HP ++ IRIQ + L
Sbjct: 29 NTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKIAHPNVPEVMIRIQTDGSITPREALV 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
K+L + ++ F + +
Sbjct: 89 GACKQLVAMYGQLGREFQKELALR 112
>gi|395517058|ref|XP_003762699.1| PREDICTED: myeloid differentiation primary response protein MyD88
[Sarcophilus harrisii]
Length = 456
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 295 DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGN 354
D +++ + W T +R+ + L L ++R DV +D I+EDC Y +
Sbjct: 229 DPTRRLLDTW---QTRERA--TVGRLLELLHKLERLDVLEDLRPSIDEDCKKYLKKKQQE 283
Query: 355 SISK----NGACMDDPSVITIEDVKSLNLGCGLAH--YDALLLYDEADFDLAKQFNTQLN 408
K +P + + + L+ GL +DA + Y +D + +L
Sbjct: 284 EAEKPLQVPAVDSSNPQTLELMGITILDDPQGLVPELFDAFICYCPSDIQFVHEMIQRLE 343
Query: 409 KMG--FTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G S ++++ RC ++V++S ++ ++ T++A
Sbjct: 344 QTDCRLKLCVSDRDVLPGTCVWSITSELIEKRCRRMVVVISDEYLQSNECDFQTKFA 400
>gi|378755189|gb|EHY65216.1| hypothetical protein NERG_01662 [Nematocida sp. 1 ERTm2]
Length = 108
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDS-IDILKKGIKELES 172
E HT G+ + LQ +V FA Y +PHP + +++ V D ID +K + L +
Sbjct: 38 EDHTIGNALASELQKNEDVAFAAYKIPHPLQNILKVKVVVDKSEDRPIDFVKASLDSLIN 97
Query: 173 ACDRI 177
C+ +
Sbjct: 98 DCESM 102
>gi|70606015|ref|YP_254885.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449066211|ref|YP_007433293.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449068487|ref|YP_007435568.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
gi|1173166|sp|P46217.1|RPOL_SULAC RecName: Full=DNA-directed RNA polymerase subunit L
gi|912481|emb|CAA50072.1| RNA polymerase subunit L [Sulfolobus acidocaldarius]
gi|68566663|gb|AAY79592.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449034719|gb|AGE70145.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449036995|gb|AGE72420.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
Length = 90
Score = 39.7 bits (91), Expect = 5.3, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+++ +L P V FA YS+PHP I I+I + DG SI + IK +E A
Sbjct: 20 EEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKI-LTDG--SISAREALIKAIELA 76
>gi|317575590|ref|NP_001187207.1| myeloid differentiation primary response protein MyD88 [Ictalurus
punctatus]
gi|189182420|gb|ACD81929.1| myeloid differentiation response protein 88 [Ictalurus punctatus]
Length = 279
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 294 EDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTR 351
E+ +K+ E+W R+ + L FLE +R D+ D I++DC Y
Sbjct: 62 ENPTRKLLEEWQT-----RAGATVGKLLSFLEQAERKDIILDLQQLIDDDCRKYLERQKE 116
Query: 352 LGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMG 411
L + + + D + ++N G +DA + Y + DF + QL +
Sbjct: 117 LPVQVPEVDSGHQDRGI-------TVNDGHVPEMFDAFICYCQNDFQFVHEMIRQLEQTD 169
Query: 412 FT--VCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 170 YNLKLCVFDRDVLPGTCVWTITSELIEIRCKRMVVVISDDYLDSDACDFQTKFA 223
>gi|307352744|ref|YP_003893795.1| RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307155977|gb|ADN35357.1| RNA polymerase, dimerization [Methanoplanus petrolearius DSM 11571]
Length = 89
Score = 39.3 bits (90), Expect = 7.4, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 100 LNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQI---FIRIQVKDG 156
+ +K + +F EGHTF +V+ + PEVD A YS ++F + + K+G
Sbjct: 6 IELKDDLARIMFVGEGHTFMNVLVDEILKNPEVDVANYS----SEFHFTDPVLLVTTKNG 61
Query: 157 YDSIDILKKGIKELESACDRITETFNDA 184
+ +D +++ + C + E N++
Sbjct: 62 KNPLDAIREAASAISGNCTGLIEILNNS 89
>gi|261349794|ref|ZP_05975211.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|288860578|gb|EFC92876.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 95
Score = 38.9 bits (89), Expect = 9.7, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 86 LENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADF 145
++N++ + ++D TL ++ F+ E H + + HIL +V++A Y++ HP
Sbjct: 1 MDNNTNIEIIKDKTLELE-----FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTG 55
Query: 146 QIFIRIQVKDGYDSIDILKKGIKELE 171
+ + I+ K G +LKK +L+
Sbjct: 56 EPNMTIKTKRGKRPRKVLKKAASQLK 81
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,760,946,106
Number of Sequences: 23463169
Number of extensions: 401362041
Number of successful extensions: 958447
Number of sequences better than 100.0: 823
Number of HSP's better than 100.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 957453
Number of HSP's gapped (non-prelim): 859
length of query: 639
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 490
effective length of database: 8,863,183,186
effective search space: 4342959761140
effective search space used: 4342959761140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)