BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12711
(639 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1
Length = 105
Score = 86.7 bits (213), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+P+C TF+F E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + +
Sbjct: 32 RPDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQES 91
Query: 163 LKKGIKELESACDRITETFNDAM 185
L +G+ +++ I ETFN+A+
Sbjct: 92 LLQGLTDIKDISRHIFETFNNAL 114
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc19 PE=2 SV=1
Length = 125
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +KE HT G+ + +++ PEV+F GYS+PHP++ ++ RIQ ++D+L+KG+
Sbjct: 36 TFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGL 95
Query: 168 KELESACDRITETFNDAM 185
+L CD +TE F + +
Sbjct: 96 DDLIDLCDAVTEKFTEQL 113
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus
laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 71.2 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GYS+ HP++ +I RIQ ++G +++ +
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL C + TF +++
Sbjct: 82 RGLNELVDVCQHVLNTFETSIK 103
>sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis elegans GN=F58A4.9 PE=3 SV=1
Length = 144
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 66 PTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHI 125
P T V+ +N K++E P + P+ T + +E HT G+ I HI
Sbjct: 26 PQETPQVDDEEDLNVPSKKKMEILDP------KSFEQDPSNLTLIMYEEDHTIGNSIKHI 79
Query: 126 LQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDA 184
L EV+F GY+VPHP + +I R+Q KDG +++++L K + +E I F ++
Sbjct: 80 LSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEES 138
>sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis briggsae GN=CBG10036 PE=3 SV=1
Length = 145
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P+ T + +E HT G+ I HIL EV+F GY+VPHP + +I R+Q KDG +++++L
Sbjct: 59 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVL 118
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K + +E I F A +
Sbjct: 119 VKAFESVEQVFSTIRGKFEAAYE 141
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio
GN=polr1d PE=3 SV=1
Length = 112
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
C TFV +E HT G+ + +++ +V+F GYS+ HP++ +I RIQ +DG + + L+
Sbjct: 21 GCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLR 80
Query: 165 KGIKELESACDRITETFNDAMQ 186
G+ L C + +TF M+
Sbjct: 81 NGLNNLTDVCKHVLQTFEARMK 102
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus
musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +I+ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 39 CVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQK 98
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + F +++
Sbjct: 99 GLNELLNVCQHVLVKFEASIK 119
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo
sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC19 PE=1 SV=1
Length = 142
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 62 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 122 KDLMDLCDVVESKFTEKIK 140
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus
GN=POLR1D PE=2 SV=1
Length = 133
Score = 63.9 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L + C + + F +++
Sbjct: 98 RGLTDLMNVCQHVLDKFEASIK 119
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus
GN=Polr2j PE=2 SV=1
Length = 117
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRGAIKDK 112
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens
GN=POLR2J PE=1 SV=1
Length = 117
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus
GN=POLR2J PE=3 SV=1
Length = 117
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens
GN=POLR2J3 PE=2 SV=1
Length = 115
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKL 193
I +L S + E F C + L+L
Sbjct: 87 TNAITDLISELSLLEERFR---TCLLPLRL 113
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens
GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVILKL 193
I +L S + E F C + L+L
Sbjct: 87 TNAITDLISELSLLEERFR---TCLLPLRL 113
>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae
GN=Rpb11 PE=2 SV=2
Length = 117
Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I + L P V FAGY +PHP + + +RIQ Y +
Sbjct: 28 PNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S E F +AM+ K
Sbjct: 88 MNAITDLLSELSLFEERFREAMKEK 112
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila
melanogaster GN=Rpb11 PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F DA++ K
Sbjct: 89 NAITDLLAELSLFEERFKDAIKEK 112
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1
Length = 122
Score = 53.9 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +R+Q + D L
Sbjct: 27 PNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1
Length = 122
Score = 53.5 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +RIQ + D L
Sbjct: 27 PNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium
discoideum GN=polr2j PE=3 SV=1
Length = 120
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ + V +RD + PN F KE HT G++I L + ++ FAGY +PHP +
Sbjct: 14 DGAKKVTMVRDTKI---PNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHN 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
+ IRIQ + + ++ ++K ++ L + +F + +Q K
Sbjct: 71 VNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKK 112
>sp|B3SRQ2|MYD88_SALSA Myeloid differentiation primary response protein MyD88 OS=Salmo
salar GN=myd88 PE=2 SV=1
Length = 283
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 26/238 (10%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMD---IKAPPNPN 292
S+D IP+ A+ R+ L ++P N D+ +A+ M ++ +
Sbjct: 4 SLDLWNIPLRALNINVRKRLG-------LFLNPRNTVASDWMSVAENMGFSYLEIKNYED 56
Query: 293 CEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENT 350
C D +++ EDW + + L L+ +DR DV +D IEEDC Y
Sbjct: 57 CLDPTRRILEDWQARCPGAK----VGKLLSILDNVDRKDVVEDLRDLIEEDCRRYIERQN 112
Query: 351 RLGNSISKNGACM---DDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQL 407
+ + +C+ + IT+ED G +DA + Y ++DFD + QL
Sbjct: 113 EPPLQVPEVDSCVPKTQERQGITLEDDPE---GGIPELFDAFICYCQSDFDFVHEMXQQL 169
Query: 408 NKMG--FTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+ +C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 170 EQTDHKLKLCVFDRDVLPGSCVWTITSELIEKRCKRMVVVISDEYLDSDACDFQTKFA 227
>sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1
SV=1
Length = 120
Score = 51.2 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRI 177
K +AC+ I
Sbjct: 88 K-------NACNSI 94
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + + + + ETF + +Q
Sbjct: 91 LSDNVHSILNQVSTLRETFANRVQ 114
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis
thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N +F E+E HT G+++ L V FAGY +PHP ++I +RI +
Sbjct: 29 NAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYN 88
Query: 165 KGIKELESACDRITETF 181
+ I +L+ D + F
Sbjct: 89 QAINDLDKELDYLKNQF 105
>sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1
Length = 126
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
T++ K +C FV + E HT G++I L P+V FA Y PHP I I I+ K GY
Sbjct: 28 TISDKGDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPK-GYA 86
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
+ +L + + S + E F +Q
Sbjct: 87 GVKLLSDNVNNILSQVATLKENFAKKIQ 114
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1
Length = 126
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
K +C F + E HT G++I L P+V FA Y PHP I I I+ K GY + +
Sbjct: 32 KGDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPK-GYAGVKL 90
Query: 163 LKKGIKELESACDRITETFNDAMQ 186
L + + + + ETF + +Q
Sbjct: 91 LSDNVHTILNQVSTLRETFVNKVQ 114
>sp|B1L7Q7|RPOL_KORCO DNA-directed RNA polymerase subunit L OS=Korarchaeum cryptofilum
(strain OPF8) GN=rpoL PE=3 SV=1
Length = 98
Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT S + L S EV+FAGY VPHP + + ++VK+G + ++LK I+ L
Sbjct: 20 ETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLKGAIRRLMEK 79
Query: 174 CDRITETF 181
+ I +F
Sbjct: 80 YEIIGNSF 87
>sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb11 PE=1 SV=1
Length = 123
Score = 47.8 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN EKE HT +++ + L S V FAGY VPHP + +R+Q + ++
Sbjct: 27 PNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVI 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
K L + + I F + K+I
Sbjct: 87 VDAAKSLITHLEEIKVNFMREWELKMI 113
>sp|C8BKC7|MYD88_SHEEP Myeloid differentiation primary response protein MyD88 OS=Ovis
aries GN=MYD88 PE=2 SV=2
Length = 296
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 26/220 (11%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ LA+ MD + E D ++ +DW + R ++ L L + R D
Sbjct: 46 DWTVLAEAMDFEYLEIQQLEKYADPTSRLLDDWQR-----RPGASVGRLLELLAKLGRED 100
Query: 332 VYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCG 382
V + IEEDC Y E +SI + ++D + ITI D LG
Sbjct: 101 VLMELGPSIEEDCQKYILKQQQEASEKPLQVDSIDSSIPRINDMAGITIRDDP---LGQK 157
Query: 383 LAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
++DA + Y +D + + QL + + +C D L G S ++++ RC
Sbjct: 158 PEYFDAFICYCPSDIEFVHEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 217
Query: 440 CVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
++V++S ++ + T++A + + H K +IPI
Sbjct: 218 RMVVVVSDXYLQSKECDFQTKFALS--LSPGAHQKRLIPI 255
>sp|A2TF48|MYD88_PIG Myeloid differentiation primary response protein MyD88 OS=Sus
scrofa GN=MYD88 PE=2 SV=2
Length = 293
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 39/225 (17%)
Query: 275 DYRGLADLMD--------IKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLEC 326
D+ GLA+ M+ ++ P+P + + +DW R ++ L L
Sbjct: 46 DWTGLAEEMNFEYLEIRRLETHPDPT-----RSLLDDWQ-----GRPGASVGRLLELLAK 95
Query: 327 IDRFDVYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSL 377
+ R DV + IEEDC Y E +S+ + M S ITI D
Sbjct: 96 LGRDDVLVELGPSIEEDCRKYILKQQQEAAEKPLQVDSVDSSIPWM---SGITIRDDP-- 150
Query: 378 NLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVM 435
LG H+DA + Y +D ++ QL + + +C D L G S +++
Sbjct: 151 -LGQMPEHFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELI 209
Query: 436 D-RCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
+ RC ++V++S ++ + T++A + + H K +IP+
Sbjct: 210 EKRCRRMVVVVSDDYLQSKECDFQTKFALS--LSPGAHQKRLIPV 252
>sp|Q4LBC6|MYD88_ONCMY Myeloid differentiation primary response protein MyD88
OS=Oncorhynchus mykiss GN=myd88 PE=2 SV=1
Length = 282
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 21/235 (8%)
Query: 237 SMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPEN-YQRDYRGLADLMDIKAPPNPNCED 295
S+D IP+ A+ R+ L ++P N D+ +A+ M N ED
Sbjct: 4 SLDLWNIPLRALNINVRKRLG-------LFLNPRNTVASDWMSVAENMGFSYLEIKNYED 56
Query: 296 LMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY--ENTRLG 353
+ + L R+ + + L+ + R DV +D IEEDC Y
Sbjct: 57 CQDPTRKIYRTGKPLSRA--QVGKLVSILDNVTRKDVVEDLRVLIEEDCKRYIERQNEPP 114
Query: 354 NSISKNGACM---DDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKM 410
+ + +C+ + IT+ED G +DA + Y ++DFD + QL +
Sbjct: 115 VQVPEVDSCVPRTPERQGITLEDDPE---GGIPELFDAFICYCQSDFDFVHEMIQQLEQT 171
Query: 411 G--FTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNNSLLHSLTQYA 462
+C D L G + ++++ RC ++V++S ++++ T++A
Sbjct: 172 DHKLKLCVFDRDALPGSCVWTITSELIEKRCKRMVVVISDEYLDSDACDFQTKFA 226
>sp|Q599T9|MYD88_BOVIN Myeloid differentiation primary response protein MyD88 OS=Bos
taurus GN=MYD88 PE=2 SV=1
Length = 296
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 26/220 (11%)
Query: 275 DYRGLADLMDIKAPPNPNCE---DLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFD 331
D+ LA+ MD + E D ++ +DW + R ++ L L + R D
Sbjct: 46 DWTVLAEAMDFEYLEIQQLEKYADPTSRLLDDWQR-----RPGASVGRLLELLAKLGRDD 100
Query: 332 VYDDCIGFIEEDCLYY---------ENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCG 382
V + IEEDC Y E +SI + ++D + ITI D LG
Sbjct: 101 VLMELGPSIEEDCQKYILKQQQEASEKPLQVDSIDSSITRINDMAGITIRDDP---LGQK 157
Query: 383 LAHYDALLLYDEADFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCT 439
+DA + Y +D + + QL + + +C D L G S ++++ RC
Sbjct: 158 PECFDAFICYCPSDIEFVHEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 217
Query: 440 CVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSK-IIPI 478
++V++S ++ + T++A + + H K +IPI
Sbjct: 218 RMVVVVSDEYLQSKECDFQTKFALS--LSPGAHQKRLIPI 255
>sp|O30032|RPOL_ARCFU DNA-directed RNA polymerase subunit L OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoL PE=3 SV=1
Length = 86
Score = 41.2 bits (95), Expect = 0.025, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP--ADFQIFIRIQVKDGYDSIDILKKG 166
V + EGHT+ +++ H L +V A Y++PHP + +I+I+ G D ++ +K+
Sbjct: 15 LVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTS---GVDPLEAVKRA 71
Query: 167 IKELESACDRITE 179
+++ +AC+ + E
Sbjct: 72 NEKIIAACNTLLE 84
>sp|A5HNF6|MYD88_CHICK Myeloid differentiation primary response protein MyD88 OS=Gallus
gallus GN=MYD88 PE=1 SV=1
Length = 299
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 29/250 (11%)
Query: 281 DLMDIKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFI 340
++ ++A P+P + E+W +V L L + R DV + G +
Sbjct: 62 EIRRLEALPDPT-----AALLEEWQSRCPGGATV---GQLLELLRQLGRHDVLLELGGSV 113
Query: 341 EEDCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNL-----GCGLAHYDALLLYDEA 395
EEDC Y + + D SV ++ + G G +DA + Y +
Sbjct: 114 EEDCKKYLRRKQQEAEQPLQVPAVDSSVPKTSELMGITTRDDPYGHGTEMFDAFICYCQK 173
Query: 396 DFDLAKQFNTQLNKMGF--TVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIVLMSTHFMNN 452
D ++ +L + F +C D L G S ++++ RC ++V++S ++ +
Sbjct: 174 DLQFVQEMIRELEQTEFKLKLCVFDRDVLPGTCVWSISGELIERRCRRMVVVISDDYLES 233
Query: 453 SLLHSLTQYAEAKHIDHTIHSKIIPILC---SDDYFSV-GFLQYCVKLKLNHYAS--NME 506
T++A + + ++IP+ C +++ S+ F+ C Y + +
Sbjct: 234 DECDFQTKFALSLSPGARLK-RLIPVKCKTMKNEFPSILRFITIC------DYTNPCTKK 286
Query: 507 QFWDRLYYSL 516
FW RL SL
Sbjct: 287 WFWTRLAKSL 296
>sp|Q5JE88|RPOL_PYRKO DNA-directed RNA polymerase subunit L OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoL PE=3
SV=1
Length = 94
Score = 40.0 bits (92), Expect = 0.061, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
+R + + N F E E HTF +++T L V FAGY++ HP
Sbjct: 1 MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHP 48
>sp|B6YTH7|RPOL_THEON DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus
(strain NA1) GN=rpoL PE=3 SV=1
Length = 95
Score = 39.7 bits (91), Expect = 0.072, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
+R + + N F E E HTF +++ +L V FAGY++ HP
Sbjct: 1 MRIEVIKREENVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHP 48
>sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoL PE=3 SV=1
Length = 90
Score = 39.7 bits (91), Expect = 0.079, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+++ +L P V FA YS+PHP I I+I + DG SI + IK +E A
Sbjct: 20 EEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKI-LTDG--SISAREALIKAIELA 76
>sp|P57671|RPOL_PYRHO DNA-directed RNA polymerase subunit L OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoL PE=3 SV=1
Length = 95
Score = 38.9 bits (89), Expect = 0.14, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
F E E HTF +++T +L+ P V F Y++ HP
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHP 48
>sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL
PE=1 SV=1
Length = 92
Score = 38.1 bits (87), Expect = 0.23, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKEL 170
E E HT G++I L+ V FA Y PHP +I ++I D L K I+ +
Sbjct: 18 EGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENI 76
>sp|Q9V2M4|RPOL_PYRAB DNA-directed RNA polymerase subunit L OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoL PE=3 SV=1
Length = 95
Score = 37.7 bits (86), Expect = 0.25, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 109 FVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
F E E HTF +++T L+ P V F Y++ HP
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFVAYTIEHP 48
>sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoL
PE=3 SV=1
Length = 93
Score = 37.4 bits (85), Expect = 0.39, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 114 EGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESA 173
E HT G+++ L P V FA YS PHP I ++I + L K I+ E
Sbjct: 20 EEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALVKAIELAEED 79
Query: 174 CDRITE 179
++ E
Sbjct: 80 TNKFIE 85
>sp|C3N7I8|RPOL_SULIY DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C3NFY8|RPOL_SULIN DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C3MXM0|RPOL_SULIM DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C3MRD1|RPOL_SULIL DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C4KIP6|RPOL_SULIK DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C3MZG6|RPOL_SULIA DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoL PE=3 SV=1
Length = 92
Score = 37.4 bits (85), Expect = 0.41, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 112 EKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIK 168
E E HT G++I L+ V FA Y PHP +I ++I D L K I+
Sbjct: 18 EGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAIE 74
>sp|C5A5J3|RPOL_THEGJ DNA-directed RNA polymerase subunit L OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoL PE=3 SV=1
Length = 95
Score = 37.0 bits (84), Expect = 0.52, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 95 LRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQ-V 153
+R + + N F E E HTF +++ L V FA YS+ HP R + V
Sbjct: 1 MRIEVIKREGNTFEFYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIV 60
Query: 154 KDGYDSIDILKKGIKELESACDRI 177
DG +S + + LE A R+
Sbjct: 61 TDGKESPE------EALEKAAQRV 78
>sp|Q8U4N1|RPOL_PYRFU DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL
PE=3 SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.60, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHP 142
N F E E HTF +++ L+ P V F Y++ HP
Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHP 48
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,988,889
Number of Sequences: 539616
Number of extensions: 9769883
Number of successful extensions: 23420
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 23367
Number of HSP's gapped (non-prelim): 76
length of query: 639
length of database: 191,569,459
effective HSP length: 124
effective length of query: 515
effective length of database: 124,657,075
effective search space: 64198393625
effective search space used: 64198393625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)