Query psy12711
Match_columns 639
No_of_seqs 303 out of 946
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:45:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_K DNA-directed RNA polyme 100.0 8.2E-36 2.8E-40 273.0 11.6 117 75-194 1-117 (123)
2 1twf_K B13.6, DNA-directed RNA 100.0 2.5E-34 8.5E-39 262.2 14.6 114 75-191 1-115 (120)
3 2js7_A Myeloid differentiation 100.0 1.9E-31 6.5E-36 251.5 6.5 144 367-516 2-149 (160)
4 1t3g_A X-linked interleukin-1 100.0 1.7E-30 5.9E-35 244.8 9.1 141 384-544 1-158 (159)
5 2pa8_L DNA-directed RNA polyme 100.0 3E-29 1E-33 219.1 12.0 84 103-186 9-92 (92)
6 1xpp_A TA1416, DNA-directed RN 100.0 3.5E-29 1.2E-33 226.8 12.5 99 88-190 7-105 (115)
7 2j67_A TOLL like receptor 10; 100.0 1.2E-29 4.2E-34 243.6 7.1 142 383-544 33-178 (178)
8 1fyx_A TOLL-like receptor 2; b 100.0 1.1E-29 3.9E-34 236.2 5.3 140 383-544 3-148 (149)
9 3j0a_A TOLL-like receptor 5; m 99.9 5E-28 1.7E-32 273.2 10.8 161 383-564 668-836 (844)
10 3ub2_A TOLL/interleukin-1 rece 99.9 7.1E-27 2.4E-31 217.6 3.8 130 380-516 5-138 (146)
11 3mop_A Myeloid differentiation 99.9 9E-26 3.1E-30 203.0 4.7 97 243-350 2-101 (110)
12 3h16_A TIR protein; bacteria T 99.7 5.3E-18 1.8E-22 157.6 4.3 98 383-482 18-116 (154)
13 3ozi_A L6TR; plant TIR domain, 99.7 9E-17 3.1E-21 158.3 8.1 107 382-492 32-140 (204)
14 3jrn_A AT1G72930 protein; TIR 99.6 2.9E-16 9.8E-21 151.5 6.1 104 383-491 6-111 (176)
15 1d2z_A Death domain of pelle; 99.6 3.2E-16 1.1E-20 140.7 0.1 94 240-348 8-108 (108)
16 2dbf_A Nuclear factor NF-kappa 99.5 1.2E-14 4.2E-19 128.9 5.2 88 240-340 4-93 (100)
17 1wmg_A Netrin receptor UNC5H2; 99.5 2E-14 6.7E-19 127.5 4.8 85 245-338 9-95 (103)
18 1ngr_A P75 low affinity neurot 99.3 2.1E-13 7E-18 117.3 2.7 78 245-338 4-84 (85)
19 3g5b_A Netrin receptor UNC5B; 99.2 1.2E-11 4.2E-16 132.5 5.7 83 245-336 315-399 (405)
20 2ib1_A Death domain containing 99.1 1.3E-11 4.4E-16 107.5 2.9 78 251-338 3-83 (91)
21 2a9i_A IRAK-4, interleukin-1 r 99.0 2.3E-10 8E-15 103.3 3.8 78 241-334 7-98 (113)
22 1wh4_A IRAK4, interleukin-1 re 99.0 2E-10 6.8E-15 105.7 2.9 79 240-334 13-105 (127)
23 2d96_A Nuclear factor NF-kappa 98.6 1.5E-08 5.2E-13 91.2 3.7 84 241-337 5-90 (109)
24 2of5_H Leucine-rich repeat and 98.5 5.4E-08 1.8E-12 87.9 5.0 98 239-350 2-107 (118)
25 1wxp_A THO complex subunit 1; 97.9 1.3E-06 4.3E-11 77.8 -0.7 67 273-342 29-102 (110)
26 2g7r_A Mucosa-associated lymph 97.8 2.1E-05 7.1E-10 71.5 6.0 86 236-334 12-111 (117)
27 2yqf_A Ankyrin-1; death domain 97.8 3.4E-06 1.2E-10 75.1 0.1 64 273-339 29-100 (111)
28 3ezq_B Protein FADD; apoptosis 97.5 8.6E-05 2.9E-09 67.8 5.5 69 272-343 16-92 (122)
29 4d8o_A Ankyrin-2; ZU5, UPA, de 97.4 4.4E-05 1.5E-09 85.3 2.7 65 271-338 507-579 (581)
30 2gf5_A FADD protein; death dom 97.2 0.00026 9E-09 68.4 4.9 69 273-344 109-185 (191)
31 1fad_A Protein (FADD protein); 97.2 0.00016 5.3E-09 62.7 2.8 65 273-340 25-97 (99)
32 3mop_K IRAK-2, interleukin-1 r 97.1 0.00017 5.7E-09 65.2 1.8 73 243-330 2-83 (111)
33 2o71_A Death domain-containing 96.4 0.0034 1.2E-07 56.6 5.3 66 273-341 35-109 (115)
34 1eiw_A Hypothetical protein MT 96.2 0.0036 1.2E-07 56.3 4.4 73 384-480 3-75 (111)
35 1d2z_B Death domain of tube; s 96.2 0.0076 2.6E-07 57.2 6.7 83 241-334 7-124 (153)
36 2of5_A Death domain-containing 95.8 0.0096 3.3E-07 53.7 5.2 61 273-336 35-104 (114)
37 1ich_A TNF-1, tumor necrosis f 95.0 0.016 5.3E-07 52.5 3.7 69 273-343 25-101 (112)
38 3oq9_A Tumor necrosis factor r 92.3 0.12 4E-06 44.7 4.2 66 273-341 12-85 (86)
39 3ezq_A Tumor necrosis factor r 91.1 0.1 3.5E-06 47.4 2.7 70 273-345 20-97 (115)
40 3hyn_A Putative signal transdu 85.3 3.2 0.00011 40.7 8.9 71 393-463 27-105 (189)
41 1twf_C B44.5, DNA-directed RNA 79.5 2.7 9.1E-05 44.0 6.4 44 144-187 225-268 (318)
42 2js7_A Myeloid differentiation 77.3 0.89 3E-05 42.4 1.9 27 522-548 128-154 (160)
43 2pa8_D DNA-directed RNA polyme 75.8 1.5 5E-05 44.2 3.1 27 103-129 9-35 (265)
44 2f62_A Nucleoside 2-deoxyribos 71.7 22 0.00075 33.4 9.9 74 392-465 20-97 (161)
45 1fyx_A TOLL-like receptor 2; b 71.1 1.5 5.2E-05 40.2 1.7 95 398-517 49-148 (149)
46 3lu0_A DNA-directed RNA polyme 70.6 2.5 8.6E-05 44.4 3.4 49 130-178 178-232 (329)
47 1bdf_A RNA polymerase alpha su 70.4 4.2 0.00014 40.6 4.9 47 132-178 180-232 (235)
48 2pa8_D DNA-directed RNA polyme 70.0 6.1 0.00021 39.6 6.0 42 144-185 223-264 (265)
49 2a6h_A DNA-directed RNA polyme 68.9 4.6 0.00016 42.1 5.0 49 131-179 173-227 (315)
50 3lu0_A DNA-directed RNA polyme 66.9 3.4 0.00011 43.5 3.5 36 103-138 20-60 (329)
51 1twf_C B44.5, DNA-directed RNA 65.1 3.1 0.00011 43.5 2.8 27 103-129 14-40 (318)
52 1t3g_A X-linked interleukin-1 64.2 1.8 6.3E-05 40.3 0.8 48 398-445 56-109 (159)
53 2j67_A TOLL like receptor 10; 60.4 3.2 0.00011 39.4 1.7 50 398-447 79-133 (178)
54 3h0g_C DNA-directed RNA polyme 59.8 6.2 0.00021 40.9 3.9 41 143-183 225-265 (297)
55 1bdf_A RNA polymerase alpha su 59.7 3.3 0.00011 41.3 1.8 37 103-139 20-61 (235)
56 3h0g_C DNA-directed RNA polyme 58.5 6.2 0.00021 41.0 3.6 30 103-132 13-43 (297)
57 3j0a_A TOLL-like receptor 5; m 57.5 4.4 0.00015 46.0 2.4 103 390-518 705-816 (844)
58 2a6h_A DNA-directed RNA polyme 49.4 7.4 0.00025 40.6 2.4 30 103-132 17-51 (315)
59 3eus_A DNA-binding protein; st 23.2 1.9E+02 0.0063 23.2 6.3 50 277-341 31-80 (86)
No 1
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-36 Score=272.97 Aligned_cols=117 Identities=26% Similarity=0.321 Sum_probs=112.4
Q ss_pred cccccchhccccCCCCceeEeecCCccCCCCeEEEEEccCCcchHHHHHHHHhcCCCeeEEeecCCCCCCCceEEEEEeC
Q psy12711 75 SLCINYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVK 154 (639)
Q Consensus 75 ~~~~~~~e~~~l~~~~Kv~~~~dt~~~~~~N~~tf~i~gEDHTLGNlLR~~Llkdp~V~FAGY~IPHPLe~~i~LrIQT~ 154 (639)
||.|+|||+|+|++++||++..|++. +|+++|+|.||||||||+||++|+++|+|+||||+||||++++++|||||+
T Consensus 1 mnap~~~e~f~l~ge~Kv~~~~dtk~---~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~ 77 (123)
T 3h0g_K 1 MNQPERYELIELMGLPKVTYELDSKS---PNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTV 77 (123)
T ss_dssp CCCCCGGGTSSCSSCCSCCEEECSSS---TTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECC
T ss_pred CCCCCccceeEeCCCcceEEecCCCC---CceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEEC
Confidence 79999999999955589999999994 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q psy12711 155 DGYDSIDILKKGIKELESACDRITETFNDAMQCKVILKLT 194 (639)
Q Consensus 155 ~~~~P~eaLk~Al~~L~~~~~~L~~~F~~ai~~k~~~~~~ 194 (639)
++++|++||++||++|++.|++|+++|.++++.++++..+
T Consensus 78 ~~~~p~eaL~~al~~L~~~~~~l~~~F~~~~~~~~~~~~~ 117 (123)
T 3h0g_K 78 EDCSPKQVIVDAAKSLITHLEEIKVNFMREWELKMISVEG 117 (123)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999988654
No 2
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=2.5e-34 Score=262.22 Aligned_cols=114 Identities=28% Similarity=0.366 Sum_probs=107.6
Q ss_pred cccccchhccccCCC-CceeEeecCCccCCCCeEEEEEccCCcchHHHHHHHHhcCCCeeEEeecCCCCCCCceEEEEEe
Q psy12711 75 SLCINYMESKQLENS-SPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQV 153 (639)
Q Consensus 75 ~~~~~~~e~~~l~~~-~Kv~~~~dt~~~~~~N~~tf~i~gEDHTLGNlLR~~Llkdp~V~FAGY~IPHPLe~~i~LrIQT 153 (639)
||.|+|||+|.|++| +|+++..+++ ++|+++|+|.||||||||+||++|+++|+|+||||+||||++++++|||||
T Consensus 1 mnap~~~e~f~l~~ge~K~~~~~~~k---~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT 77 (120)
T 1twf_K 1 MNAPDRFELFLLGEGESKLKIDPDTK---APNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQT 77 (120)
T ss_dssp CCSCCSGGGTSCCTTCCSCCEEECSS---STTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEE
T ss_pred CCCCCccceeecCCCCceEEEEeccC---CCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEE
Confidence 899999999999987 7999999998 599999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy12711 154 KDGYDSIDILKKGIKELESACDRITETFNDAMQCKVIL 191 (639)
Q Consensus 154 ~~~~~P~eaLk~Al~~L~~~~~~L~~~F~~ai~~k~~~ 191 (639)
+++++|++||++||++|+++|++++++|.++++.+.++
T Consensus 78 ~~~~~p~eaL~~a~~~L~~~~~~l~~~f~~e~~~~~~~ 115 (120)
T 1twf_K 78 TEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLA 115 (120)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999966555544
No 3
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.97 E-value=1.9e-31 Score=251.52 Aligned_cols=144 Identities=21% Similarity=0.377 Sum_probs=120.6
Q ss_pred CccchhhhhhhccCCCCCccceEEEeccCCHHHHHHHHHhhhc--CCceEEEecCCCCCCcchHHHHHHHHH-hcceEEE
Q psy12711 367 SVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNK--MGFTVCDKDNSFLTGQFEHSAFIQVMD-RCTCVIV 443 (639)
Q Consensus 367 ~i~T~DD~~~~~~G~~~k~YDAFVsYS~kD~dFV~eLv~~LE~--~gykLCLh~RDflpG~~i~e~I~~aIe-rSRR~Iv 443 (639)
++++.||+ .|...+.|||||||+.+|.+||.+|++.||+ .||++|+++||+.||..+.++|.++|+ +||++|+
T Consensus 2 ~~~~~~~~----~~~~~~~yDvFISys~~D~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~Iv 77 (160)
T 2js7_A 2 GITTLDDP----LGHMPERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVV 77 (160)
T ss_dssp TTCTTCCT----TSCCTTCEEEEEECCGGGHHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEE
T ss_pred CceecCCC----CCCCCcceEEEEEcccccHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEE
Confidence 45677776 4555789999999999999999999999995 689999999999999888888999998 7999999
Q ss_pred EecccccCChhhHHHHHHHHHHhhhhcCCCcEEEEEeccCCC-CcccchhhhhhcccccccchhhHHHHHHHHh
Q psy12711 444 LMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYF-SVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516 (639)
Q Consensus 444 VLSpnFL~SeWc~fe~~~A~~l~l~~r~~~kLIpIlye~~~~-~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL 516 (639)
|||++|++|+||.+|+..|++..++.+ +++||||+|+.+.. .|+.|++++++||.++ .+.++||++|++||
T Consensus 78 VlS~~y~~S~wc~~El~~a~~~~~~~~-~~~vIpV~~~~~~~~lp~ll~~~~~~~~~~~-~~~~~FW~kL~~al 149 (160)
T 2js7_A 78 VVSDDYLQSKECDFQTKFALSLSPGAH-QKRLIPIKYKAMKKEFPSILRFITVCDYTNP-CTKSWFWTRLAKAL 149 (160)
T ss_dssp ECCHHHHHSHHHHHHHHHHHHHCTTHH-HHTEEEEESSCCCCCCCTTTSCSSCEETTCT-TTCSSHHHHHHHHH
T ss_pred EECcchhcCHHHHHHHHHHHHHHHccC-CCEEEEEEEcccchhhHHHHhceEEEECCCC-CCChHHHHHHHHHc
Confidence 999999999999999999999877655 47899999998852 5778888888887542 24455666666665
No 4
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=244.80 Aligned_cols=141 Identities=21% Similarity=0.321 Sum_probs=114.1
Q ss_pred CccceEEEeccCCHH-----------HHHHHH-Hhhh-cCCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEeccccc
Q psy12711 384 AHYDALLLYDEADFD-----------LAKQFN-TQLN-KMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFM 450 (639)
Q Consensus 384 k~YDAFVsYS~kD~d-----------FV~eLv-~~LE-~~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL 450 (639)
+.|||||||+++|.+ ||.+++ +.|| +.||++|+++||+.||..+.++|.++|++|||+|+|||++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 579999999999964 555555 4699 799999999999999999999999999999999999999998
Q ss_pred -CChhhHHHHHHHHHHhhhhcCCCcEEEEEeccCCCCcccchhhhhhcccccccchhhHHHHHHHHhccCCCCCccCCCC
Q psy12711 451 -NNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGVPEWDFA 529 (639)
Q Consensus 451 -~SeWc~fe~~~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~~~~~~~p~W~~~ 529 (639)
+|+||.+|++.|++..++.+ +.+||||+++++.. ...+- .+ .+|+..|+ ++++++|+++
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~-~~~vI~I~~~~~~~---~~~~~-------------~~-~~L~~~l~--~~t~l~W~~p 140 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTG-EIKVILIECSELRG---IMNYQ-------------EV-EALKHTIK--LLTVIKWHGP 140 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTT-SSEEEEEECSCCCS---HHHHH-------------HH-HHHHHTCS--SEEEEECCSG
T ss_pred hcChHHHHHHHHHHHHHHhcC-CCEEEEEEeccccc---ccccc-------------ch-HHHHHHHh--hCCeEeCCCC
Confidence 99999999999998877766 58999999876531 11110 01 35776664 5788999653
Q ss_pred ---cchhHHHHHHHHhhc
Q psy12711 530 ---SNMEQFWDRLYYSLK 544 (639)
Q Consensus 530 ---s~~~~FW~KLr~aL~ 544 (639)
+..+.||+|||+|||
T Consensus 141 ~~~~~~~~FW~~Lr~amP 158 (159)
T 1t3g_A 141 KCNKLNSKFWKRLQYEMP 158 (159)
T ss_dssp GGGSSSCHHHHHHHHHSC
T ss_pred cccchHHHHHHHHHHhCC
Confidence 344899999999998
No 5
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=99.96 E-value=3e-29 Score=219.07 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=81.9
Q ss_pred CCCeEEEEEccCCcchHHHHHHHHhcCCCeeEEeecCCCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12711 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFN 182 (639)
Q Consensus 103 ~~N~~tf~i~gEDHTLGNlLR~~Llkdp~V~FAGY~IPHPLe~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~~~F~ 182 (639)
++|+++|+|.||||||||+||++|++||+|+||||+||||++++++|||||+++++|.+||++|+++|.+.|++++++|+
T Consensus 9 ~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~~~~f~ 88 (92)
T 2pa8_L 9 ESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYIDEIK 88 (92)
T ss_dssp ETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q psy12711 183 DAMQ 186 (639)
Q Consensus 183 ~ai~ 186 (639)
++++
T Consensus 89 ~~~k 92 (92)
T 2pa8_L 89 GLTK 92 (92)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9864
No 6
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=99.96 E-value=3.5e-29 Score=226.84 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=92.6
Q ss_pred CCCceeEeecCCccCCCCeEEEEEccCCcchHHHHHHHHhcCCCeeEEeecCCCCCCCceEEEEEeCCCCCHHHHHHHHH
Q psy12711 88 NSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167 (639)
Q Consensus 88 ~~~Kv~~~~dt~~~~~~N~~tf~i~gEDHTLGNlLR~~Llkdp~V~FAGY~IPHPLe~~i~LrIQT~~~~~P~eaLk~Al 167 (639)
+.+|+++..+++ ++|+++|+|.||||||||+||++|++||+|+||||+||||++++++|||||+++. |.+||++|+
T Consensus 7 ~~~kmeiki~~k---~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p~eaL~~al 82 (115)
T 1xpp_A 7 RTAESSLRVISK---EKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAV 82 (115)
T ss_dssp --CCCEEEEEEE---CSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-HHHHHHHHH
T ss_pred cccceEEEEEcC---CCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-hHHHHHHHH
Confidence 447899999988 5999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcch
Q psy12711 168 KELESACDRITETFNDAMQCKVI 190 (639)
Q Consensus 168 ~~L~~~~~~L~~~F~~ai~~k~~ 190 (639)
++|.+.|++|.++|.++++..+.
T Consensus 83 ~~L~~~~~~l~~~f~~a~~~~~~ 105 (115)
T 1xpp_A 83 RKLSKLYEDLGTQFQKEFQRYES 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999999999999886543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.96 E-value=1.2e-29 Score=243.55 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=113.4
Q ss_pred CCccceEEEeccCCHHHHHH-HHHhhhc--CCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHH
Q psy12711 383 LAHYDALLLYDEADFDLAKQ-FNTQLNK--MGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLT 459 (639)
Q Consensus 383 ~k~YDAFVsYS~kD~dFV~e-Lv~~LE~--~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~ 459 (639)
.+.|||||||+.+|.+||.. |.+.||. .||++|+++||+.||..+.++|.++|++||++|+|||++|++|+||.+|+
T Consensus 33 ~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El 112 (178)
T 2j67_A 33 NVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112 (178)
T ss_dssp SCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred CccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence 67999999999999999975 9999996 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCcEEEEEeccCCCCcccchhhhhhcccccccchhhHHHHHHHHhccCCCCCccCCCC-cchhHHHHH
Q psy12711 460 QYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGVPEWDFA-SNMEQFWDR 538 (639)
Q Consensus 460 ~~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~~~~~~~p~W~~~-s~~~~FW~K 538 (639)
+.|++..++.+ +++||||+|++++. ..|. -+...|+..|+ ++++++|+++ +..+.||+|
T Consensus 113 ~~a~~~~~~~~-~~~vIpV~~~~i~~--~~lp---------------~~~~~Lr~~l~--~~t~l~W~~~~~~~~~FW~~ 172 (178)
T 2j67_A 113 YFAHHNLFHEN-SDHIILILLEPIPF--YCIP---------------TRYHKLKALLE--KKAYLEWPKDRRKCGLFWAN 172 (178)
T ss_dssp HHTTCC--------CEEEEESSCCCG--GGSC---------------TTCHHHHHHHH--TTCSEECCSSGGGHHHHHHH
T ss_pred HHHHHHHHhcC-CCEEEEEEecCCCh--HHCC---------------hhHHHHHHHHh--cCCEEECCCCcchhHHHHHH
Confidence 99987666665 57899999988642 1111 01123555554 5778899974 455899999
Q ss_pred HHHhhc
Q psy12711 539 LYYSLK 544 (639)
Q Consensus 539 Lr~aL~ 544 (639)
||+||.
T Consensus 173 Lr~al~ 178 (178)
T 2j67_A 173 LRAAIN 178 (178)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999984
No 8
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.95 E-value=1.1e-29 Score=236.18 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=117.2
Q ss_pred CCccceEEEeccCCHHHHHH-HHHhhhc--CCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHH
Q psy12711 383 LAHYDALLLYDEADFDLAKQ-FNTQLNK--MGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLT 459 (639)
Q Consensus 383 ~k~YDAFVsYS~kD~dFV~e-Lv~~LE~--~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~ 459 (639)
.+.|||||||+.+|.+||.+ |.+.||. +||++|+++||+.||..+.++|.++|++||++|+|||++|++|+||.+|+
T Consensus 3 ~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El 82 (149)
T 1fyx_A 3 NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82 (149)
T ss_dssp SCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHS
T ss_pred CccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHH
Confidence 57899999999999999985 8999995 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCcEEEEEeccCCC--CcccchhhhhhcccccccchhhHHHHHHHHhccCCCCCccCCCC-cchhHHH
Q psy12711 460 QYAEAKHIDHTIHSKIIPILCSDDYF--SVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGVPEWDFA-SNMEQFW 536 (639)
Q Consensus 460 ~~A~~l~l~~r~~~kLIpIlye~~~~--~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~~~~~~~p~W~~~-s~~~~FW 536 (639)
..|++..++.+ +++||||+|+++.. .|. ++ ..|+..|+ +++++.|+++ +..+.||
T Consensus 83 ~~a~~~~~~~~-~~~vIpv~~~~i~~~~~p~--~~-----------------~~Lr~~l~--~~t~l~W~~~~~~~~~FW 140 (149)
T 1fyx_A 83 DFSHFRLFDEN-NDAAILILLEPIEKKAIPQ--RF-----------------XKLRKIMN--TKTYLEWPMDEAQREGFW 140 (149)
T ss_dssp CCSCCTTCGGG-TTCCEEEESSCCCTTTSCS--SC-----------------HHHHHHHH--HTCSEECCSSGGGHHHHH
T ss_pred HHHHHHHHhcC-CCEEEEEEecCCChhhcCh--HH-----------------HHHHHHhc--CCCEEECCCCCccchHHH
Confidence 99987666665 57899999988742 121 00 13444553 4678899974 4558999
Q ss_pred HHHHHhhc
Q psy12711 537 DRLYYSLK 544 (639)
Q Consensus 537 ~KLr~aL~ 544 (639)
+|||+||.
T Consensus 141 ~~Lr~al~ 148 (149)
T 1fyx_A 141 VNLRAAIK 148 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999986
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=273.21 Aligned_cols=161 Identities=17% Similarity=0.291 Sum_probs=122.6
Q ss_pred CCccceEEEeccCCHHHH-HHHHHhhhc-----CCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhH
Q psy12711 383 LAHYDALLLYDEADFDLA-KQFNTQLNK-----MGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLH 456 (639)
Q Consensus 383 ~k~YDAFVsYS~kD~dFV-~eLv~~LE~-----~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~ 456 (639)
.+.|||||||+.+|++|| +++++.||+ .||++|+|+|||.||..+.++|.++|++|||+|+|||++|++|+||+
T Consensus 668 ~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~ 747 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCL 747 (844)
T ss_dssp CCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTT
T ss_pred ceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHH
Confidence 679999999999999998 668999994 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEeccCCCCcccchhhhhhcccccccchhhHHHHHHHHhccCCCCCccCCCC-cchhHH
Q psy12711 457 SLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGVPEWDFA-SNMEQF 535 (639)
Q Consensus 457 fe~~~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~~~~~~~p~W~~~-s~~~~F 535 (639)
+|+++|++..++++ ++++|||+++++.. ....+|. +||..|+ .+++.+|+++ +....|
T Consensus 748 ~e~~~a~~~~~~~~-~~~~i~i~~~~~~~-~~~~~~~-----------------~l~~~~~--~~~~l~w~~~~~~~~~F 806 (844)
T 3j0a_A 748 EAFSYAQGRCLSDL-NSALIMVVVGSLSQ-YQLMKHQ-----------------SIRGFVQ--KQQYLRWPEDFQDVGWF 806 (844)
T ss_dssp HHHHHHHSCCCCSS-CTTEEEEESSCCCS-SSCCSCS-----------------STTHHHH--TTCCCCCCSSSTTTTHH
T ss_pred HHHHHHHHHHHHhc-CCcEEEEEeccCCh-HHhhhhH-----------------HHHHHHh--hCCeeeCCCCchhHHHH
Confidence 99999999988877 68999999987642 1111111 1333442 4678899874 555889
Q ss_pred HHHHHHhhcCCCCCCc-cccceeeecCCCC
Q psy12711 536 WDRLYYSLKGVGKGSQ-KQAIQFQTTPTSM 564 (639)
Q Consensus 536 W~KLr~aL~dv~~~s~-~~~~~~~~~~~~~ 564 (639)
|++||+||+..++... +.++++|+--+||
T Consensus 807 w~~l~~al~~~~~~~~~~~~~~~~~~~~~~ 836 (844)
T 3j0a_A 807 LHKLSQQILKKEKEKKKDNNIPLQTVATIS 836 (844)
T ss_dssp HHHHTTTTTSCCCCSCC-------------
T ss_pred HHHHHHHhccccccccCCCCccceeeeeec
Confidence 9999999998765432 1245666655554
No 10
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=7.1e-27 Score=217.60 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=98.4
Q ss_pred CCCCCccceEEEeccCCHHHHHHHHHhhhc--CCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHH
Q psy12711 380 GCGLAHYDALLLYDEADFDLAKQFNTQLNK--MGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHS 457 (639)
Q Consensus 380 G~~~k~YDAFVsYS~kD~dFV~eLv~~LE~--~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~f 457 (639)
|...+.|||||||+.+|.+||.+|.+.||+ .||++|+++||+.||..+.++|.++|++||++|+|||++|++|+||.+
T Consensus 5 ~r~~k~YDvFISy~~~D~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp CTTSSSEEEEEECCGGGHHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCCCcceEEEeCChhhHHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 345789999999999999999999999995 799999999999999888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEec--cCCCCcccchhhhhhcccccccchhhHHHHHHHHh
Q psy12711 458 LTQYAEAKHIDHTIHSKIIPILCS--DDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSL 516 (639)
Q Consensus 458 e~~~A~~l~l~~r~~~kLIpIlye--~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL 516 (639)
|++.|++..+..+ +++|||+++ .+. .|+.|+++.++|+.. .+..+.+|+.++
T Consensus 85 El~~al~~~~~~~--~~vIpv~~~v~~~~-lp~~Lr~~~~id~~~----~d~~f~~l~~~v 138 (146)
T 3ub2_A 85 QMLQALTEAPGAE--GCTIPLLSGLSRAA-YPPELRFMYYVDGRG----PDGGFRQVKEAV 138 (146)
T ss_dssp HHHHHHHTSSSSS--SEEEEEECSCCGGG-SCGGGGGSCCEETTS----GGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CcEEEEEcCCChhh-CCHHHhCeeeeeccC----hHhhHHHHHHHH
Confidence 9999999876543 589999954 333 678999999999863 356778888887
No 11
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=99.91 E-value=9e-26 Score=203.04 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=91.0
Q ss_pred ccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC---CCCCccchHHHHHHHhhccCCCCCCcccHHH
Q psy12711 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP---PNPNCEDLMKKMFEDWTKSSTLDRSVFNIAT 319 (639)
Q Consensus 243 vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~---~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~ 319 (639)
|||++||+.+|++||.+|||.+.+ ++|||+||+.+||++. .+++.++||..||+.|+.|+ ++|||+
T Consensus 2 ~pl~~L~~~~R~kL~~~LDp~~~~------g~dWr~LA~~Lg~~~~~I~~fe~~~sPT~~lL~~W~~r~-----~aTVg~ 70 (110)
T 3mop_A 2 LPLAALNMRVRRRLSLFLNVRTQV------AADWTALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRP-----GASVGR 70 (110)
T ss_dssp CCGGGSCHHHHHHHHHHHTSCCSS------SCCHHHHHTTTTCCHHHHHHHTSSSSHHHHHHHHHHSSS-----SCSHHH
T ss_pred CChhhCCHHHHHHHHHHcCCCCCc------cccHHHHHHHcCCCHHHHHHHhCCCCcHHHHHHHHhcCC-----CCcHHH
Confidence 899999999999999999999754 8999999999999986 56888999999999999884 699999
Q ss_pred HHHHHhhcccchhhhhchHHHHHhHHHHHhh
Q psy12711 320 FLHFLECIDRFDVYDDCIGFIEEDCLYYENT 350 (639)
Q Consensus 320 Ll~~Le~idR~DVldD~~~~ieeDc~ky~~~ 350 (639)
|+++|++|+|+||++|++++|++||+||++-
T Consensus 71 L~~~L~~i~R~Dv~~~l~~~~e~d~~ky~~~ 101 (110)
T 3mop_A 71 LLELLTKLGRDDVLLELGPSIEEDCQKYIAA 101 (110)
T ss_dssp HHHHHHHHTCHHHHTTSHHHHHHHSTTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999863
No 12
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.70 E-value=5.3e-18 Score=157.64 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCccceEEEeccCCH-HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHHHH
Q psy12711 383 LAHYDALLLYDEADF-DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQY 461 (639)
Q Consensus 383 ~k~YDAFVsYS~kD~-dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~~~ 461 (639)
.+.||+||||+.+|. .||.+|...|+..|+++|+.++|+.+|..+.+.|.++|+.|+.+|+|+|++|+.|.||..|+..
T Consensus 18 ~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~ 97 (154)
T 3h16_A 18 APPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDG 97 (154)
T ss_dssp CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHH
T ss_pred CCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHH
Confidence 578999999999998 5899999999999999999999999999899999999999999999999999999999999998
Q ss_pred HHHHhhhhcCCCcEEEEEecc
Q psy12711 462 AEAKHIDHTIHSKIIPILCSD 482 (639)
Q Consensus 462 A~~l~l~~r~~~kLIpIlye~ 482 (639)
|.....+ . +++||||+|+-
T Consensus 98 ~~~~~~~-~-~~~iiPV~~~v 116 (154)
T 3h16_A 98 LFQLESS-G-RSRILPIWHKV 116 (154)
T ss_dssp HTCCCTT-S-CCCEEEEEESC
T ss_pred HHHHHhc-C-CCEEEEEEecC
Confidence 8765333 2 46899999954
No 13
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.66 E-value=9e-17 Score=158.27 Aligned_cols=107 Identities=11% Similarity=0.221 Sum_probs=91.9
Q ss_pred CCCccceEEEeccCCH--HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHH
Q psy12711 382 GLAHYDALLLYDEADF--DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLT 459 (639)
Q Consensus 382 ~~k~YDAFVsYS~kD~--dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~ 459 (639)
+...|||||||+.+|. .|+.+|.+.|+..|+++|+++||+.+|..+.++|.++|+.||..|+|+|+||+.|.||..|+
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 4689999999999996 68999999999999999999999999998989999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCcEEEEEeccCCCCcccchh
Q psy12711 460 QYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQY 492 (639)
Q Consensus 460 ~~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr~ 492 (639)
..+....-+.+ ++.||||+|+ +.|.+++.
T Consensus 112 ~~I~e~~~~~~-~~~ViPIFY~---VdPs~Vr~ 140 (204)
T 3ozi_A 112 AEIVRRQEEDP-RRIILPIFYM---VDPSDVRH 140 (204)
T ss_dssp HHHHHHHHHCT-TSEECCEEES---SCHHHHHH
T ss_pred HHHHHHHHhcC-CeeeEEEEee---cCHHHHHh
Confidence 88766532223 4689999995 34666663
No 14
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.61 E-value=2.9e-16 Score=151.46 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=78.0
Q ss_pred CCccceEEEeccCCH--HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHHH
Q psy12711 383 LAHYDALLLYDEADF--DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQ 460 (639)
Q Consensus 383 ~k~YDAFVsYS~kD~--dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~~ 460 (639)
...|||||||+.+|. .||.+|.+.|+..|+++|++++|+.+|..+.++|.++|+.||..|+|+|+||..|.||..|+.
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 578999999999996 699999999999999999999999999989999999999999999999999999999999998
Q ss_pred HHHHHhhhhcCCCcEEEEEeccCCCCcccch
Q psy12711 461 YAEAKHIDHTIHSKIIPILCSDDYFSVGFLQ 491 (639)
Q Consensus 461 ~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr 491 (639)
.+.... +.+ ...||||+|+- .|.+++
T Consensus 86 ~i~~~~-~~~-~~~ViPIfy~V---~ps~Vr 111 (176)
T 3jrn_A 86 TIMDFE-KKG-SITVMPIFYGV---EPNHVR 111 (176)
T ss_dssp HHHHHH-HTT-SCEEEEEECSS---CHHHHH
T ss_pred HHHhhh-ccC-CCEEEEEEecC---CHHHhh
Confidence 876543 333 47899999953 466666
No 15
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=99.55 E-value=3.2e-16 Score=140.68 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=83.6
Q ss_pred CccccccccChhhHHHHHhccCCcccccCCCCccCchHHHH-HHcCCCCC--CCCC----ccchHHHHHHHhhccCCCCC
Q psy12711 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLA-DLMDIKAP--PNPN----CEDLMKKMFEDWTKSSTLDR 312 (639)
Q Consensus 240 ~~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLA-elmgf~~~--~~e~----~~~Pt~~vLe~W~~r~~~~~ 312 (639)
.+++|+.+|++.+|++||.+|||.+ .|+.|| +.|||++. .++. ..+||+.+|+.|+++.
T Consensus 8 ~~~~~i~~Lp~~vr~~L~~~LD~~~----------~W~~la~~~m~~~~ev~~ir~~~~~~~SPT~~LL~~W~g~~---- 73 (108)
T 1d2z_A 8 DNTMAIRLLPLPVRAQLCAHLDALD----------VWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQY---- 73 (108)
T ss_dssp CCCCBGGGSCHHHHHHHHHHHHHHT----------CHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred CCCChHHhCCHHHHHHHHHHhCCcc----------hHHHHHHHHcCCchHHHHHHHHHhhCCChHHHHHHHhcCCC----
Confidence 5679999999999999999999996 299999 88999982 2333 6789999999997764
Q ss_pred CcccHHHHHHHHhhcccchhhhhchHHHHHhHHHHH
Q psy12711 313 SVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYE 348 (639)
Q Consensus 313 ~~aTvg~Ll~~Le~idR~DVldD~~~~ieeDc~ky~ 348 (639)
++|||+|+++|.+++|+|+++++++.+++||.+|.
T Consensus 74 -n~TV~~L~~lL~k~~l~~a~~~L~~~Vd~~~~~~i 108 (108)
T 1d2z_A 74 -NHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI 108 (108)
T ss_dssp -CCBHHHHHHHHHHTTCHHHHHHTGGGSCGGGGGGC
T ss_pred -CCcHHHHHHHHHHcchHHHHHHHHHHhhHHHhhhC
Confidence 58999999999999999999999999999999873
No 16
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=128.85 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=78.5
Q ss_pred CccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC--CCCCccchHHHHHHHhhccCCCCCCcccH
Q psy12711 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--PNPNCEDLMKKMFEDWTKSSTLDRSVFNI 317 (639)
Q Consensus 240 ~~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~--~~e~~~~Pt~~vLe~W~~r~~~~~~~aTv 317 (639)
..+-++..|+..+|++|+.+|||... .+|||+||+.|||.|. .++...+||..||+.|+.+ ++||
T Consensus 4 ~~~~~l~~L~~~~r~kL~~lLd~~~~-------~~dWr~LAe~Lg~~~li~~f~~~~SPt~~LL~~we~~------~~tv 70 (100)
T 2dbf_A 4 GSSGDMKQLAEDVKLQLYKLLEIPDP-------DKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVS------GGTV 70 (100)
T ss_dssp CCCCSCTTSCHHHHHHHHHHHTSCCT-------TSSHHHHHHHHTCGGGHHHHHHSSCHHHHHHHHHHHT------CCCH
T ss_pred CCcchhhhCCHHHHHHHHHHhCCCCC-------CCCHHHHHHHHCcHHHHHHHhcCCChHHHHHHHHHhC------CCCH
Confidence 34567899999999999999998864 4999999999999997 4577889999999999984 4799
Q ss_pred HHHHHHHhhcccchhhhhchHHH
Q psy12711 318 ATFLHFLECIDRFDVYDDCIGFI 340 (639)
Q Consensus 318 g~Ll~~Le~idR~DVldD~~~~i 340 (639)
++|+++|+.|+|.||+.++.+.+
T Consensus 71 ~~L~~~L~~mgr~dav~~L~~~~ 93 (100)
T 2dbf_A 71 RELVEALRQMGYTEAIEVIQAAS 93 (100)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999998875
No 17
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=99.47 E-value=2e-14 Score=127.47 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=74.4
Q ss_pred ccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC--CCCCccchHHHHHHHhhccCCCCCCcccHHHHHH
Q psy12711 245 IEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLH 322 (639)
Q Consensus 245 L~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~--~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~ 322 (639)
..-|.+.+|++|+.+|||.... .+|||.||+.|||++. .++...+||..||+.|+.+++ .++||++|++
T Consensus 9 ~~~Lp~~~r~~L~~lLD~~~~~------g~dWr~LA~~Lg~~~~i~~~~~~~SPt~~LL~~W~~~~~---~~~tv~~L~~ 79 (103)
T 1wmg_A 9 AFKIPLSIRQKICSSLDAPNSR------GNDWRLLAQKLSMDRYLNYFATKASPTGVILDLWEARQQ---DDGDLNSLAS 79 (103)
T ss_dssp CCCCCHHHHHHHHHHHHCGGGT------TSSHHHHHHHTTCGGGHHHHHTSSCHHHHHHHHHHHHCC---STTTHHHHHH
T ss_pred cccCCHHHHHHHHHHhCcCCCC------ccCHHHHHHHcCChHHHHHHHcCCCHHHHHHHHHHHhcC---CCCcHHHHHH
Confidence 4568899999999999998865 7999999999999994 345678999999999999842 2689999999
Q ss_pred HHhhcccchhhhhchH
Q psy12711 323 FLECIDRFDVYDDCIG 338 (639)
Q Consensus 323 ~Le~idR~DVldD~~~ 338 (639)
+|+.|+|.||++++..
T Consensus 80 ~L~~mgR~Da~~~L~~ 95 (103)
T 1wmg_A 80 ALEEMGKSEMLVAMAT 95 (103)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHc
Confidence 9999999999998765
No 18
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=99.35 E-value=2.1e-13 Score=117.31 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=68.6
Q ss_pred ccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC---CCCCccchHHHHHHHhhccCCCCCCcccHHHHH
Q psy12711 245 IEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP---PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFL 321 (639)
Q Consensus 245 L~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~---~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll 321 (639)
-.-|....|++|+.+|| .+||+.||+.|||++. .+++.++||..+|+.|+.|+ +|||+.|.
T Consensus 4 ~~~lp~~~r~~l~~lL~-----------g~dW~~LA~~Lg~~~~~I~~~~~~~~pt~~lL~~W~~r~-----~atv~~L~ 67 (85)
T 1ngr_A 4 YSSLPLTKREEVEKLLN-----------GDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWGAQD-----SATLDALL 67 (85)
T ss_dssp STTSCSTTTHHHHHHSC-----------TTHHHHHHHHTTCCHHHHHHHHHSSCHHHHHHHHGGGST-----TCBHHHHH
T ss_pred hhhCCHHHHHHHHHHhC-----------cCCHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHHHhCC-----CCCHHHHH
Confidence 34577889999999998 5899999999999985 34456789999999999985 59999999
Q ss_pred HHHhhcccchhhhhchH
Q psy12711 322 HFLECIDRFDVYDDCIG 338 (639)
Q Consensus 322 ~~Le~idR~DVldD~~~ 338 (639)
..|++|+|.||++++.+
T Consensus 68 ~aL~~igR~Dv~~~L~~ 84 (85)
T 1ngr_A 68 AALRRIQRADIVESLCS 84 (85)
T ss_dssp HHHHHTTCHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHcC
Confidence 99999999999999864
No 19
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=99.18 E-value=1.2e-11 Score=132.47 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred ccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC--CCCCccchHHHHHHHhhccCCCCCCcccHHHHHH
Q psy12711 245 IEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLH 322 (639)
Q Consensus 245 L~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~--~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~ 322 (639)
.--|+..+|++|+.+|||.... .+|||+||+.||+++. .+.+..+||+.||++|+.+.+ .++||++|++
T Consensus 315 ~f~Lp~~~r~~L~~lLd~~~~~------g~DWr~LA~~Lgl~~~i~~f~~~~sPT~~LL~~We~~~~---~~~tl~~L~~ 385 (405)
T 3g5b_A 315 AFKIPLSIRQKICNSLDAPNSR------GNDWRLLAQKLSMDRYLNYFATKASPTGVILDLWEARQQ---DDGDLNSLAS 385 (405)
T ss_dssp TCSSCHHHHHHHHHHHSSCCTT------STTHHHHHHHTTCCTTTHHHHTSSCHHHHHHHHHHHHHT---TTCCHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCCCC------CCCHHHHHHHcCcHHHHHHHhcCCCcHHHHHHHHHhhCC---CCCCHHHHHH
Confidence 4458899999999999999865 8999999999999986 234678999999999998843 2689999999
Q ss_pred HHhhcccchhhhhc
Q psy12711 323 FLECIDRFDVYDDC 336 (639)
Q Consensus 323 ~Le~idR~DVldD~ 336 (639)
+|++|+|.||++=+
T Consensus 386 ~L~emgR~D~~~~l 399 (405)
T 3g5b_A 386 ALEEMGKSEMLVAM 399 (405)
T ss_dssp HHHHTTCCHHHHHH
T ss_pred HHHHhCCHHHHHhh
Confidence 99999999998643
No 20
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=99.14 E-value=1.3e-11 Score=107.49 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=67.6
Q ss_pred hhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC---CCCCccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhc
Q psy12711 251 KTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP---PNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECI 327 (639)
Q Consensus 251 ~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~---~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~i 327 (639)
..|+++..+|++ ..+ .+||+.||..|||++. .++...+|+..+|..|+.|.+ ++||++.|...|..|
T Consensus 3 ~~r~~v~~ll~~-~~~------G~dW~~LA~~Lg~~~~~I~~i~~~~~~~~~lL~~W~~r~g---~~ATv~~L~~aL~~i 72 (91)
T 2ib1_A 3 QQQEEVQRLLMM-GEP------AKGWQELAGHLGYQAEAVETMACDQMPAYTLLRNWAAQEG---NRATLRVLEDALAAI 72 (91)
T ss_dssp HHHHTTHHHHTT-TCC------SSTHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHHTTSSSS---STTSTTHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCC------CccHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHhccC---CCCcHHHHHHHHHHc
Confidence 578999999986 544 7999999999999985 456677899999999998864 479999999999999
Q ss_pred ccchhhhhchH
Q psy12711 328 DRFDVYDDCIG 338 (639)
Q Consensus 328 dR~DVldD~~~ 338 (639)
+|.||++.+.+
T Consensus 73 ~R~Di~~~L~~ 83 (91)
T 2ib1_A 73 GREDVVQVLSS 83 (91)
T ss_dssp TCHHHHHHHTC
T ss_pred CHHHHHHHHhc
Confidence 99999998764
No 21
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=98.97 E-value=2.3e-10 Score=103.34 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=66.4
Q ss_pred ccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHH-------cCCCCC---CCC----CccchHHHHHHHhhc
Q psy12711 241 IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADL-------MDIKAP---PNP----NCEDLMKKMFEDWTK 306 (639)
Q Consensus 241 ~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAel-------mgf~~~---~~e----~~~~Pt~~vLe~W~~ 306 (639)
.++|++.|++.+|++||.+|||. .||+.||+. ++|++. .++ ...+||..+|++|..
T Consensus 7 ~~~~I~~Lp~~~r~~L~~~LD~~----------~~W~~La~~i~~~~~~~ky~~~~i~~~e~~~~~~~SPT~~LL~~Wg~ 76 (113)
T 2a9i_A 7 PSTYIRNLNVGILRKLSDFIDPQ----------EGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGLSPTCELLFDWGT 76 (113)
T ss_dssp TTSBGGGCCHHHHHHHHHHHSGG----------GHHHHHHHHCBCTTSSBSSCHHHHHHHHHTTTTTCCHHHHHHHHHGG
T ss_pred CCCchhhCCHHHHHHHHHHhCCc----------ccHHHHHHHHcCccccCCCCHHHHHHHHHhhccCCCHHHHHHHHHcc
Confidence 57899999999999999999997 599999999 445553 122 348899999999987
Q ss_pred cCCCCCCcccHHHHHHHHhhcccchhhh
Q psy12711 307 SSTLDRSVFNIATFLHFLECIDRFDVYD 334 (639)
Q Consensus 307 r~~~~~~~aTvg~Ll~~Le~idR~DVld 334 (639)
+ ++|||+|+++|.+++.++..+
T Consensus 77 ~------~~TV~~Ll~lL~~~~l~~Aa~ 98 (113)
T 2a9i_A 77 T------NCTVGDLVDLLVQIELFAPAT 98 (113)
T ss_dssp G------TCBHHHHHHHHHHTTCHHHHH
T ss_pred C------CCcHHHHHHHHHHcccHHHHH
Confidence 4 489999999999999998876
No 22
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=98.95 E-value=2e-10 Score=105.73 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=67.2
Q ss_pred CccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCC-------CCCC---CC----CccchHHHHHHHhh
Q psy12711 240 YIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDI-------KAPP---NP----NCEDLMKKMFEDWT 305 (639)
Q Consensus 240 ~~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf-------~~~~---~e----~~~~Pt~~vLe~W~ 305 (639)
..++++..|++.+|++|+.+|||. .|||.||+.|+. ++.. ++ ...+||..+|++|.
T Consensus 13 ~~~~~i~~Lp~~vr~~L~~~LD~~----------~~Wr~LA~~i~~~~~~~ry~~~ei~~ie~~~~~~~SPT~~LL~~Wg 82 (127)
T 1wh4_A 13 TPSTYIRNLNVGILRKLSDFIDPQ----------EGWKKLAVAIKKPSGDDRYNQFHIRRFEALLQTGKSPTCELLFDWG 82 (127)
T ss_dssp CTTSBGGGSCHHHHHHHHHHHSST----------THHHHHHHHCBCTTCCBSSCHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCchhhhCCHHHHHHHHHHhCCc----------ccHHHHHHHHccccccCCcCHHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 356999999999999999999987 799999999995 3321 12 34789999999998
Q ss_pred ccCCCCCCcccHHHHHHHHhhcccchhhh
Q psy12711 306 KSSTLDRSVFNIATFLHFLECIDRFDVYD 334 (639)
Q Consensus 306 ~r~~~~~~~aTvg~Ll~~Le~idR~DVld 334 (639)
.++ +|||+|+++|.+|+|++..+
T Consensus 83 ~~~------~TV~~Ll~lL~~~~~~~Aa~ 105 (127)
T 1wh4_A 83 TTN------CTVGDLVDLLVQIELFAPAT 105 (127)
T ss_dssp HHC------CBHHHHHHHHHHTTCHHHHH
T ss_pred ccC------CcHHHHHHHHHHcccHHHHH
Confidence 854 79999999999999999876
No 23
>2d96_A Nuclear factor NF-kappa-B P100 subunit; six helix bundle, processing, proteasome, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.5e-08 Score=91.22 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=69.6
Q ss_pred ccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC--CCCCccchHHHHHHHhhccCCCCCCcccHH
Q psy12711 241 IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--PNPNCEDLMKKMFEDWTKSSTLDRSVFNIA 318 (639)
Q Consensus 241 ~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~--~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg 318 (639)
..-++.-|...+|++|+..|++... ..|||+||+.+|+.+. .+....+|+..+|+.|+.+ ++||.
T Consensus 5 ~~~~~~~L~~~~~~kLc~lLD~p~~-------~~~Wr~LA~~L~~~~l~~~f~~~~SPt~~LL~l~E~~------ggtl~ 71 (109)
T 2d96_A 5 SSGPGLSLGDTALQNLEQLLDGPEA-------QGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELA------GGDLA 71 (109)
T ss_dssp SSSSSCSCCHHHHHHHHHHHSSSSC-------SSCHHHHHHHHTCHHHHHHHHTSSCHHHHHHHHHHHT------TCCHH
T ss_pred CccchhhCCHHHHHHHHHHcCCCCC-------CCCHHHHHHHhChhHHHHHHhCCCChHHHHHHHHHhc------CCCHH
Confidence 3446677889999999999996642 4899999999998775 2346789999999999875 36999
Q ss_pred HHHHHHhhcccchhhhhch
Q psy12711 319 TFLHFLECIDRFDVYDDCI 337 (639)
Q Consensus 319 ~Ll~~Le~idR~DVldD~~ 337 (639)
.|+++|+.|+|.|++.=+.
T Consensus 72 ~L~~aL~~MG~~eav~~L~ 90 (109)
T 2d96_A 72 GLLEALSDMGLEEGVRLLR 90 (109)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHhc
Confidence 9999999999999986433
No 24
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=98.54 E-value=5.4e-08 Score=87.87 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=73.0
Q ss_pred CCccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCCC-------CCC-ccchHHHHHHHhhccCCC
Q psy12711 239 DYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPP-------NPN-CEDLMKKMFEDWTKSSTL 310 (639)
Q Consensus 239 d~~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~~-------~e~-~~~Pt~~vLe~W~~r~~~ 310 (639)
++....-..|+-.--..||..| .+||+.||..+||++.. ++. ..+++..||..|..+.+
T Consensus 2 ~~~~~~~~~lt~~~l~~ia~~l------------g~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g- 68 (118)
T 2of5_H 2 NLGDAETGFLTQSNLLSVAGRL------------GLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQA- 68 (118)
T ss_dssp CCSCTTTCCCCHHHHHHHHHTC------------CTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTS-
T ss_pred CCCCCCcCCCCHHHHHHHHHHH------------hhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccC-
Confidence 4445555666666666777666 68999999999999751 221 24589999999999863
Q ss_pred CCCcccHHHHHHHHhhcccchhhhhchHHHHHhHHHHHhh
Q psy12711 311 DRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENT 350 (639)
Q Consensus 311 ~~~~aTvg~Ll~~Le~idR~DVldD~~~~ieeDc~ky~~~ 350 (639)
++.||++.|...|..++|-||.++++..++.++.+|.+.
T Consensus 69 -~~~Atv~~L~~aL~~~~r~diae~l~~~ie~~~~~y~~~ 107 (118)
T 2of5_H 69 -GQPGAVGLLVQALEQSDRQDVAEEVRAVLELGRRKYQDS 107 (118)
T ss_dssp -SCSSHHHHHHHHHHHTTCHHHHHHHHHHTCCC-------
T ss_pred -CCCcHHHHHHHHHHHcCcHHHHHHHHHHHhhhhHHHHHH
Confidence 237999999999999999999999999999999999864
No 25
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=97.89 E-value=1.3e-06 Score=77.83 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=55.5
Q ss_pred cCchHHHHHHcCCCCCC---CC----CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHHH
Q psy12711 273 QRDYRGLADLMDIKAPP---NP----NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEE 342 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~~---~e----~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~iee 342 (639)
.+||+.||..|||++.. ++ +..+....||..|..+.+ +.||++.|+..|..++|.||.|++...+++
T Consensus 29 g~~Wk~LAr~Lg~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G---~~AT~~~L~~AL~~~~~~dvae~l~~~~~~ 102 (110)
T 1wxp_A 29 GEQWKILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEG---VHATPENLINALNKSGLSDLAESLTNDNET 102 (110)
T ss_dssp TTTHHHHTTTTTCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCHHHHHHHHCCCSS
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHcCcHHHHHHHHHHhhc
Confidence 68999999999999752 22 223467999999999864 479999999999999999999998876653
No 26
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=97.82 E-value=2.1e-05 Score=71.46 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=62.2
Q ss_pred CCCCCccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC--------------CCCCccchHHHHH
Q psy12711 236 DSMDYIKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP--------------PNPNCEDLMKKMF 301 (639)
Q Consensus 236 ~~~d~~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~--------------~~e~~~~Pt~~vL 301 (639)
+..-+.+.||.-|...+.++|+.+|+...- ...||.|||.+|+.+. .++...+|+..+|
T Consensus 12 ~~~~~~~~~l~~L~e~~L~~Lc~lLD~~~~-------~kGWrkLAe~l~~~~~fr~S~~~l~~cslkvle~~gSPSr~LL 84 (117)
T 2g7r_A 12 SGLVPRGSTLNRLREPLLRRLSELLDQAPE-------GRGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLL 84 (117)
T ss_dssp --------CGGGSCHHHHHHHHHHHTCC-----------CHHHHHHHCC------CCHHHHHHHHGGGGSTTCCHHHHHH
T ss_pred cCCCCCCCChhhCCHHHHHHHHHHHcCCCc-------CCCHHHHHHHhccccccccChHHhhhhhhhhhccCCChHHHHH
Confidence 345688999999999999999999976631 3789999999999764 3456678999999
Q ss_pred HHhhccCCCCCCcccHHHHHHHHhhcccchhhh
Q psy12711 302 EDWTKSSTLDRSVFNIATFLHFLECIDRFDVYD 334 (639)
Q Consensus 302 e~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVld 334 (639)
..|..++ .||++|+++|+.||--+.+.
T Consensus 85 ~~~~~~g------~Tl~~L~~~Lq~mg~~EAi~ 111 (117)
T 2g7r_A 85 KLMGEKG------CTVTELSDFLQAMEHTEVLQ 111 (117)
T ss_dssp HHHHHTT------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC------CcHHHHHHHHHHhccHHHHH
Confidence 9999975 69999999999998776665
No 27
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=97.78 E-value=3.4e-06 Score=75.09 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=52.2
Q ss_pred cCchHHHHHHcCCCCCCC---C-----CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHH
Q psy12711 273 QRDYRGLADLMDIKAPPN---P-----NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGF 339 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~~~---e-----~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ 339 (639)
..||+.||..+||+...+ + +..+-+..||..|..+.+ ..||++.|...|..++|.||.+.+...
T Consensus 29 g~~Wk~LAr~Lg~s~~~I~~I~~~~p~~~~eq~~~mL~~W~~~~g---~~AT~~~L~~aL~~i~r~diae~l~~~ 100 (111)
T 2yqf_A 29 GLSWAELARELQFSVEDINRIRVENPNSLLEQSVALLNLWVIREG---QNANMENLYTALQSIDRGEIVNMLEGS 100 (111)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHT---TSCCHHHHHHHHHHTTCCHHHHHHSCC
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhC---CCchHHHHHHHHHHcCcHHHHHHHHHh
Confidence 589999999999997521 1 122348999999999864 479999999999999999999987653
No 28
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=97.52 E-value=8.6e-05 Score=67.79 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=57.6
Q ss_pred ccCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHHHh
Q psy12711 272 YQRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED 343 (639)
Q Consensus 272 ~~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ieeD 343 (639)
+.+||+.||-.+||+.. .++ +..+...+||..|..+.+ +.||++.|+..|..++|-||.|.++..+...
T Consensus 16 lG~~Wk~LAR~LGlse~dId~Ie~~~p~dl~eq~~~mL~~W~~r~G---~~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 16 VGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp CCTTHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHCT---TTCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhC---CCchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 36999999999999863 122 234567899999998864 5899999999999999999999999988865
No 29
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=97.43 E-value=4.4e-05 Score=85.26 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=51.3
Q ss_pred CccCchHHHHHHcCCCCCCC-------C-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchH
Q psy12711 271 NYQRDYRGLADLMDIKAPPN-------P-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIG 338 (639)
Q Consensus 271 g~~rDWRgLAelmgf~~~~~-------e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~ 338 (639)
.+.+||+.||..|||++..+ + +..+++..+|..|+.|.+ +.||++.|+..|.+|+|-||+++++.
T Consensus 507 ~LG~DWk~LAr~LG~s~~dId~I~~~~p~dl~eQ~~~mL~~W~~r~G---~~ATv~~L~~ALr~igR~DIae~Leg 579 (581)
T 4d8o_A 507 HLGFSWTELARELDFTEEQIHQIRIENPNSLQDQSHALLKYWLERDG---KHATDTNLVECLTKINRMDIVHLMET 579 (581)
T ss_dssp HHTTHHHHHHHHTTCCHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCHHHHC----
T ss_pred hcccCHHHHHHHcCCCHHHHHHHHhhCCCCHHHHHHHHHHHHHhCcC---CCchHHHHHHHHHHcChHHHHHHhcc
Confidence 44789999999999997521 1 123489999999999964 47999999999999999999998865
No 30
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=97.20 E-value=0.00026 Score=68.37 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred cCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHHHhH
Q psy12711 273 QRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC 344 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ieeDc 344 (639)
.+||+.||-.+||+.. .++ +.......+|..|..+.+ +.||++.|...|..++|.||.+.++..+..+.
T Consensus 109 g~~Wk~Lar~Lgl~~~~I~~I~~~~~~d~~eq~~~mL~~W~~r~g---~~At~~~L~~AL~~~~~~diae~l~~~~~~~~ 185 (191)
T 2gf5_A 109 GKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEK---ENATVAHLVGALRSCQMNLVADLVQEVQQARD 185 (191)
T ss_dssp CTTHHHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTT---TTCCHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHcCcHHHHHHHHHHHHHhh
Confidence 5899999999999974 122 345678999999998864 58999999999999999999999999988664
No 31
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=97.18 E-value=0.00016 Score=62.68 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=54.3
Q ss_pred cCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHH
Q psy12711 273 QRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFI 340 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~i 340 (639)
.+||+.||-.+||+.. .++ +..+....||..|..+.+ +.||++.|...|..++|-||.+.++..+
T Consensus 25 g~~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g---~~At~~~L~~AL~~~~~~~iae~i~~~~ 97 (99)
T 1fad_A 25 GRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEK---KNASVAGLVKALRTCRLNLVADLVEEAQ 97 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHG---GGGSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccC---CCCcHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 5899999999999964 122 334688999999999864 5799999999999999999999887765
No 32
>3mop_K IRAK-2, interleukin-1 receptor-associated kinase-like 2; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=97.05 E-value=0.00017 Score=65.22 Aligned_cols=73 Identities=10% Similarity=0.125 Sum_probs=57.3
Q ss_pred ccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHcCCCCC----CCC-----CccchHHHHHHHhhccCCCCCC
Q psy12711 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAP----PNP-----NCEDLMKKMFEDWTKSSTLDRS 313 (639)
Q Consensus 243 vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelmgf~~~----~~e-----~~~~Pt~~vLe~W~~r~~~~~~ 313 (639)
+.+..|.+.++++|+..|++-. ..||+++|. +++... .++ ...+||+.||..|..++
T Consensus 2 ~yIy~LP~~v~~~Lc~iLD~~~--------~W~~~~~a~-~i~~d~~~iR~~e~~~~~~G~SpT~eLL~~Wg~~N----- 67 (111)
T 3mop_K 2 CYIYQLPSWVLDDLCRNMDALS--------EWDWMEFAS-YVITDLTQLRKIKSMEWVQGVSITRELLWWWGMRQ----- 67 (111)
T ss_dssp CBGGGSCHHHHHHHTTTTTTSC--------HHHHHHHHT-TTTCCHHHHHHHHHGGGSTTCCHHHHHHHHHHTTT-----
T ss_pred cchhhCCHHHHHHHHHHcCCCC--------cHHHHHHHH-HhhccHHHHHHHHHHHhhcCCCcHHHHHHHHHhcC-----
Confidence 5678899999999999999866 468888885 455211 121 34589999999999765
Q ss_pred cccHHHHHHHHhhcccc
Q psy12711 314 VFNIATFLHFLECIDRF 330 (639)
Q Consensus 314 ~aTvg~Ll~~Le~idR~ 330 (639)
+||++|..+|.+++=+
T Consensus 68 -~TV~eL~~lL~~l~l~ 83 (111)
T 3mop_K 68 -ATVQQLVDLLCRLELY 83 (111)
T ss_dssp -CBSHHHHHTTTTTSCH
T ss_pred -CcHHHHHHHHHHcccH
Confidence 7999999999988766
No 33
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=96.39 E-value=0.0034 Score=56.65 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=49.8
Q ss_pred cCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccc-hhhhhchHHHH
Q psy12711 273 QRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRF-DVYDDCIGFIE 341 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~-DVldD~~~~ie 341 (639)
.+||+.||-.+||+.. .++ +..+....+|..|..+.+ +.||++.|...|..++|. +|+.-+.+-++
T Consensus 35 G~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G---~~AT~~~L~~AL~~~~l~~~v~~~~~~~~~ 109 (115)
T 2o71_A 35 GPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFG---KQATFQSLHNGLRAVEVDPSLLLHMLEELE 109 (115)
T ss_dssp CTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCCTHHHHHHTC---
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6899999999999874 122 233577899999999864 479999999999999998 55555554444
No 34
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.22 E-value=0.0036 Score=56.27 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=55.5
Q ss_pred CccceEEEeccCCHHHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHHHhcceEEEEecccccCChhhHHHHHHHH
Q psy12711 384 AHYDALLLYDEADFDLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQYAE 463 (639)
Q Consensus 384 k~YDAFVsYS~kD~dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~~~A~ 463 (639)
+.|..||||+.+| -.+.|...|...||..- | ..|+.|..+|++++..-..++|+++|...|.
T Consensus 3 ~~~~lFISh~~~d--~~~~L~~~l~~~~f~~~----~------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~ 64 (111)
T 1eiw_A 3 AEIRLYITEGEVE--DYRVFLERLEQSGLEWR----P------------ATPEDADAVIVLAGLWGTRRDEILGAVDLAR 64 (111)
T ss_dssp CCEEEEECCCCSH--HHHHHHHHHHHHCSCEE----E------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHT
T ss_pred ceEEEEEecccHh--HHHHHHHHHhCCCCeee----c------------CccccCCEEEEEeCCCcCCChHHHHHHHHHH
Confidence 5799999999999 35556666665555433 2 5678999999999999999999999998776
Q ss_pred HHhhhhcCCCcEEEEEe
Q psy12711 464 AKHIDHTIHSKIIPILC 480 (639)
Q Consensus 464 ~l~l~~r~~~kLIpIly 480 (639)
.. .+.+|.|-.
T Consensus 65 ~~------gkpIigV~~ 75 (111)
T 1eiw_A 65 KS------SKPIITVRP 75 (111)
T ss_dssp TT------TCCEEEECC
T ss_pred Hc------CCCEEEEEc
Confidence 43 245666653
No 35
>1d2z_B Death domain of tube; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2
Probab=96.20 E-value=0.0076 Score=57.20 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=61.4
Q ss_pred ccccccccChhhHHHHHhccCCcccccCCCCccCchHHHHHHc-----------------------CCCCC-----CCC-
Q psy12711 241 IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLM-----------------------DIKAP-----PNP- 291 (639)
Q Consensus 241 ~~vPL~aL~~~tR~~Ls~~LNp~k~l~s~~g~~rDWRgLAelm-----------------------gf~~~-----~~e- 291 (639)
.++.++-|.+..|++||.+|++. ..|+.|+..+ ++.|. .++
T Consensus 7 ~~teIR~Lp~~~~~~La~iLD~~----------d~WkkLm~~Ipk~l~~~~~~~~~~~~~~~~~~~~~kY~~~~i~~ie~ 76 (153)
T 1d2z_B 7 RNTELRRVEDNDIYRLAKILDEN----------SCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDE 76 (153)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHGG----------GHHHHHHHHCBSSCCHHHHHSTTCCCHHHHGGGCBSSCHHHHHHHHH
T ss_pred CcceeeeCCHHHHHHHHHHcCcc----------chHHHHHHhccccccccccccccccccccccccccCcCHHHHHHHHH
Confidence 56788999999999999999876 5799999844 22332 112
Q ss_pred ---C---ccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhh
Q psy12711 292 ---N---CEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYD 334 (639)
Q Consensus 292 ---~---~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVld 334 (639)
. ..+||..+|++|.. ++.-..+.|||+|+.+|-+++=+--.+
T Consensus 77 ~~~r~~~~~Spt~~lLdeWGT-sG~~~~rpTV~~L~~LL~kaeL~~AAd 124 (153)
T 1d2z_B 77 AANRLPPDQSKSQMMIDEWKT-SGKLNERPTVGVLLQLLVQAELFSAAD 124 (153)
T ss_dssp HHHHSCTTCCHHHHHHHHHHT-CSSSTTSCBHHHHHHHHHHTTCHHHHH
T ss_pred HHhhccCCCCHHHHHHHHhcc-CCcccCCCcHHHHHHHHHHhhHHHHHH
Confidence 1 46799999999965 322224689999999999888764433
No 36
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=95.81 E-value=0.0096 Score=53.65 Aligned_cols=61 Identities=8% Similarity=0.174 Sum_probs=47.9
Q ss_pred cCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccc-hhhhhc
Q psy12711 273 QRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRF-DVYDDC 336 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~-DVldD~ 336 (639)
.+||+.||-.+||+.. .++ +.......+|..|..+.+ +.||++.|+..|..+++. +|+.-+
T Consensus 35 G~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G---~~AT~~~L~~AL~~~~l~~~v~~~~ 104 (114)
T 2of5_A 35 GPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFG---KQATFQSLHNGLRAVEVDPSLLLHM 104 (114)
T ss_dssp CSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHG---GGCCHHHHHHHHHHTTCCTHHHHHH
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 6899999999999874 122 233577899999999864 479999999999999998 444433
No 37
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=94.99 E-value=0.016 Score=52.55 Aligned_cols=69 Identities=10% Similarity=0.183 Sum_probs=54.4
Q ss_pred cCchHHHHHHcCCCCCC-------CC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHHHh
Q psy12711 273 QRDYRGLADLMDIKAPP-------NP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEED 343 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~~-------~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ieeD 343 (639)
.++|+.+|--+|++--. ++ +..+-..++|..|..+.| +++||++.|+.-|..|+=-.+.|.+++.+..|
T Consensus 25 ~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G--~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~~~ 101 (112)
T 1ich_A 25 PLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTP--RREATLELLGRVLRDMDLLGCLEDIEEALCGP 101 (112)
T ss_dssp STTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSC--CSSCHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHhccHHHHHHHHHHHhcc
Confidence 48999999999998641 21 234456779999999864 36899999999999999999999888887755
No 38
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=92.29 E-value=0.12 Score=44.66 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=54.4
Q ss_pred cCchHHHHHHcCCCCC-------CCC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHH
Q psy12711 273 QRDYRGLADLMDIKAP-------PNP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIE 341 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~-------~~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ie 341 (639)
..||+.+|--+|++.. .++ +..+...++|..|..+.+ +.|++..|+.-|..++=..+.|.+++.+.
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~~g---~~a~~~~Li~~Lr~~~l~~~Ad~I~~~l~ 85 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHG---KSDAYQDLIKGLKKAECRRTLDKFQDMVQ 85 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHHSC---SSSHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHHhC---cchHHHHHHHHHHHccchhHHHHHHHHHh
Confidence 4799999999999863 222 234678999999999864 57899999999999999999998887653
No 39
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=91.10 E-value=0.1 Score=47.39 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=58.4
Q ss_pred cCchHHHHHHcCCCCCC-------CC-CccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHHHhH
Q psy12711 273 QRDYRGLADLMDIKAPP-------NP-NCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDC 344 (639)
Q Consensus 273 ~rDWRgLAelmgf~~~~-------~e-~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ieeDc 344 (639)
.+||+.+|--+|++.-. ++ .......++|..|..+.+ +.|++..|+.-|..+.=..+.|-++..+..|+
T Consensus 20 ~~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~~G---~~aa~~~Li~aLr~~~l~~~Ad~Iq~~l~~~~ 96 (115)
T 3ezq_A 20 LSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHG---KKEAYDTLIKDLKKANLCTLAEKIQTIILKDI 96 (115)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHHHhC---cccHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 48999999999998642 22 233577899999999864 57899999999999999999999999999886
Q ss_pred H
Q psy12711 345 L 345 (639)
Q Consensus 345 ~ 345 (639)
.
T Consensus 97 ~ 97 (115)
T 3ezq_A 97 T 97 (115)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=85.30 E-value=3.2 Score=40.67 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHHHhhh-cCCceEEE------ecCCCCCC-cchHHHHHHHHHhcceEEEEecccccCChhhHHHHHHHH
Q psy12711 393 DEADFDLAKQFNTQLN-KMGFTVCD------KDNSFLTG-QFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQYAE 463 (639)
Q Consensus 393 S~kD~dFV~eLv~~LE-~~gykLCL------h~RDflpG-~~i~e~I~~aIerSRR~IvVLSpnFL~SeWc~fe~~~A~ 463 (639)
+.+|..+...|...-+ +.-|..-- ..||--.+ ..+-..+-+-|.+|+.+|++||++-..+.|-++|.+.|.
T Consensus 27 a~~Di~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai 105 (189)
T 3hyn_A 27 STHDFVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGI 105 (189)
T ss_dssp GSTTHHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHH
Confidence 6778877777754433 22233221 24676663 556678888999999999999999999999999988765
No 41
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=79.53 E-value=2.7 Score=43.97 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=39.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12711 144 DFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQC 187 (639)
Q Consensus 144 e~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~~~F~~ai~~ 187 (639)
.+++.|.|.|+|.++|.+||.+|++-|.+.|+.|.+.+.+....
T Consensus 225 ~dkfif~VET~Gsi~Peeav~~A~kIL~~kl~~f~~~l~~~~~~ 268 (318)
T 1twf_C 225 ADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD 268 (318)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36899999999999999999999999999999999988776544
No 42
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=77.32 E-value=0.89 Score=42.43 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCccCCCCcchhHHHHHHHHhhcCCCC
Q psy12711 522 GVPEWDFASNMEQFWDRLYYSLKGVGK 548 (639)
Q Consensus 522 ~~p~W~~~s~~~~FW~KLr~aL~dv~~ 548 (639)
.++.|.+....+.||+|||+||+..+.
T Consensus 128 ~~~~~~~~~~~~~FW~kL~~al~~~~~ 154 (160)
T 2js7_A 128 TVCDYTNPCTKSWFWTRLAKALSLPLE 154 (160)
T ss_dssp SCEETTCTTTCSSHHHHHHHHHHSCTT
T ss_pred EEEECCCCCCChHHHHHHHHHcCCccc
Confidence 467887755668999999999998664
No 43
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=75.80 E-value=1.5 Score=44.19 Aligned_cols=27 Identities=22% Similarity=0.189 Sum_probs=24.5
Q ss_pred CCCeEEEEEccCCcchHHHHHHHHhcC
Q psy12711 103 KPNCRTFVFEKEGHTFGSVITHILQSY 129 (639)
Q Consensus 103 ~~N~~tf~i~gEDHTLGNlLR~~Llkd 129 (639)
+++.++|.++|-|+||||+||-.|+..
T Consensus 9 ~~~~~~f~l~g~~~t~~NalRRills~ 35 (265)
T 2pa8_D 9 DDTRIDLVFEGYPLEFVNAIRRASMLY 35 (265)
T ss_dssp CSSEEEEEEESSCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHc
Confidence 478999999999999999999998864
No 44
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=71.69 E-value=22 Score=33.43 Aligned_cols=74 Identities=15% Similarity=0.031 Sum_probs=53.6
Q ss_pred eccCC-HHHHHHHHHhhhcCCceEEEecCCCCCC-cchHHHHHHHHHhcceEEEEecccccCC-hh-hHHHHHHHHHH
Q psy12711 392 YDEAD-FDLAKQFNTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVMDRCTCVIVLMSTHFMNN-SL-LHSLTQYAEAK 465 (639)
Q Consensus 392 YS~kD-~dFV~eLv~~LE~~gykLCLh~RDflpG-~~i~e~I~~aIerSRR~IvVLSpnFL~S-eW-c~fe~~~A~~l 465 (639)
|++.+ .+|..++...|++.|+.+.....+-.+. ..++++=.+.|++|.-+|.+|+|=.-.. .| ..||.-+|.++
T Consensus 20 F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 20 FNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp GSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 57788 8999999999999999877765444332 3455555788999999999999622111 23 56888888776
No 45
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=71.06 E-value=1.5 Score=40.21 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHH-----HhcceEEEEecccccCChhhHHHHHHHHHHhhhhcCC
Q psy12711 398 DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVM-----DRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIH 472 (639)
Q Consensus 398 dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aI-----erSRR~IvVLSpnFL~SeWc~fe~~~A~~l~l~~r~~ 472 (639)
.++.++...+++...-+++.-+++.--.+-...+..++ ++.+++|.|+=.+--...
T Consensus 49 ~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~------------------- 109 (149)
T 1fyx_A 49 WIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKA------------------- 109 (149)
T ss_dssp CHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTT-------------------
T ss_pred hHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhh-------------------
Confidence 45677777888777788888777764433333333322 244577777533211100
Q ss_pred CcEEEEEeccCCCCcccchhhhhhcccccccchhhHHHHHHHHhc
Q psy12711 473 SKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLK 517 (639)
Q Consensus 473 ~kLIpIlye~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~ 517 (639)
+|-.+ .. ....|+..++++|.......++||++|++||+
T Consensus 110 ---~p~~~--~~-Lr~~l~~~t~l~W~~~~~~~~~FW~~Lr~al~ 148 (149)
T 1fyx_A 110 ---IPQRF--XK-LRKIMNTKTYLEWPMDEAQREGFWVNLRAAIK 148 (149)
T ss_dssp ---SCSSC--HH-HHHHHHHTCSEECCSSGGGHHHHHHHHHHHHH
T ss_pred ---cChHH--HH-HHHHhcCCCEEECCCCCccchHHHHHHHHHhc
Confidence 11000 00 01223344455655433456899999999994
No 46
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=70.56 E-value=2.5 Score=44.42 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCeeEEeecCC-----CCC-CCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy12711 130 PEVDFAGYSVP-----HPA-DFQIFIRIQVKDGYDSIDILKKGIKELESACDRIT 178 (639)
Q Consensus 130 p~V~FAGY~IP-----HPL-e~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~ 178 (639)
.=|.-+.|.|. ... .++..|.|.|+|+++|.+||..|++-|++.+..|.
T Consensus 178 sPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f~ 232 (329)
T 3lu0_A 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (329)
T ss_dssp CCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTSS
T ss_pred CceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45777888764 333 47899999999999999999999999998876543
No 47
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=70.39 E-value=4.2 Score=40.62 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=38.3
Q ss_pred eeEEeecCCCC------CCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy12711 132 VDFAGYSVPHP------ADFQIFIRIQVKDGYDSIDILKKGIKELESACDRIT 178 (639)
Q Consensus 132 V~FAGY~IPHP------Le~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~ 178 (639)
|.-+.|.++-. -.+++.|.|.|+|+++|.+||.+|++-|.+.|..|.
T Consensus 180 v~~v~y~ve~~~v~~~~~~d~li~eIeT~Gsi~P~eal~~A~~iL~~~~~~f~ 232 (235)
T 1bdf_A 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (235)
T ss_dssp EEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred EEEEEEEccCccccccccCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55577776532 236799999999999999999999999999887664
No 48
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=70.00 E-value=6.1 Score=39.65 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12711 144 DFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185 (639)
Q Consensus 144 e~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~~~F~~ai 185 (639)
.++..+.|.|+|..+|.+++..|++-|.+.++.|.+.+...+
T Consensus 223 ~d~~i~~VEt~Gsl~Pee~v~~A~~iL~~~~~~~~~~l~~~~ 264 (265)
T 2pa8_D 223 EDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEVV 264 (265)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999887653
No 49
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=68.87 E-value=4.6 Score=42.10 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=39.1
Q ss_pred CeeEEeecCC------CCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy12711 131 EVDFAGYSVP------HPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITE 179 (639)
Q Consensus 131 ~V~FAGY~IP------HPLe~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~~ 179 (639)
.|.-+.|.+. -.-.+++.|.|.|+|+++|.+||.+|++-|.+.|..|.+
T Consensus 173 pv~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f~~ 227 (315)
T 2a6h_A 173 PVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSN 227 (315)
T ss_dssp CEEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3555667654 123478999999999999999999999999999887643
No 50
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=66.93 E-value=3.4 Score=43.49 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=28.5
Q ss_pred CCCeEEEEEc----cCCcchHHHHHHHHhcC-CCeeEEeec
Q psy12711 103 KPNCRTFVFE----KEGHTFGSVITHILQSY-PEVDFAGYS 138 (639)
Q Consensus 103 ~~N~~tf~i~----gEDHTLGNlLR~~Llkd-p~V~FAGY~ 138 (639)
+++.+.|.++ |-+|||||+||-.|+.. |+....+-+
T Consensus 20 ~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~ 60 (329)
T 3lu0_A 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60 (329)
T ss_dssp TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEE
T ss_pred CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEE
Confidence 3789999999 99999999999999875 554443333
No 51
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=65.09 E-value=3.1 Score=43.47 Aligned_cols=27 Identities=4% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCCeEEEEEccCCcchHHHHHHHHhcC
Q psy12711 103 KPNCRTFVFEKEGHTFGSVITHILQSY 129 (639)
Q Consensus 103 ~~N~~tf~i~gEDHTLGNlLR~~Llkd 129 (639)
+++.++|.++|-|+||||+||-.|+..
T Consensus 14 ~~~~~kF~leG~~~tlaNALRRiLLSe 40 (318)
T 1twf_C 14 SKDNVDFILSNVDLAMANSLRRVMIAE 40 (318)
T ss_dssp CSSEECCEEBSSCHHHHHHHHHHHHHC
T ss_pred cCCEEEEEEEccChhHHHHHHHHHHHc
Confidence 478999999999999999999998864
No 52
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=64.18 E-value=1.8 Score=40.26 Aligned_cols=48 Identities=4% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhcCCceEEEecCCCC-CCcchHHHHHH----HH-HhcceEEEEe
Q psy12711 398 DLAKQFNTQLNKMGFTVCDKDNSFL-TGQFEHSAFIQ----VM-DRCTCVIVLM 445 (639)
Q Consensus 398 dFV~eLv~~LE~~gykLCLh~RDfl-pG~~i~e~I~~----aI-erSRR~IvVL 445 (639)
.++.++...+|+....+|+.-+++. -..+-...+.. ++ ++.+++|+|+
T Consensus 56 ~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~ 109 (159)
T 1t3g_A 56 TYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIE 109 (159)
T ss_dssp THHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEE
T ss_pred chHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4567788888888899999999995 33222222222 22 3456777773
No 53
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=60.43 E-value=3.2 Score=39.44 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHH-----HhcceEEEEecc
Q psy12711 398 DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVM-----DRCTCVIVLMST 447 (639)
Q Consensus 398 dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aI-----erSRR~IvVLSp 447 (639)
.++.+|...+|+...-+++.-+++.-..+-...+..++ ++.+++|.|+=.
T Consensus 79 ~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 79 SISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp CHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESS
T ss_pred cHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 45677888888878889999998875433333333333 234677777533
No 54
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.80 E-value=6.2 Score=40.92 Aligned_cols=41 Identities=7% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12711 143 ADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFND 183 (639)
Q Consensus 143 Le~~i~LrIQT~~~~~P~eaLk~Al~~L~~~~~~L~~~F~~ 183 (639)
-.+++.|.|.|+|.++|.+++.+|++-|.+.++.|.+.+++
T Consensus 225 ~~dkfif~VET~Gsl~p~eiv~~A~~iL~~kl~~f~~~L~~ 265 (297)
T 3h0g_C 225 EPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265 (297)
T ss_dssp CCCCEEEEEEBCSSSCTTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999998888776643
No 55
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=59.73 E-value=3.3 Score=41.34 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCCeEEEEEc----cCCcchHHHHHHHHhcC-CCeeEEeecC
Q psy12711 103 KPNCRTFVFE----KEGHTFGSVITHILQSY-PEVDFAGYSV 139 (639)
Q Consensus 103 ~~N~~tf~i~----gEDHTLGNlLR~~Llkd-p~V~FAGY~I 139 (639)
+++.+.|.++ |-++||||+||-.|+.. |+...-+-+|
T Consensus 20 ~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~I 61 (235)
T 1bdf_A 20 SSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVEI 61 (235)
T ss_dssp SSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred cCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEEE
Confidence 4788999996 99999999999998865 6655554444
No 56
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=58.51 E-value=6.2 Score=40.97 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=25.9
Q ss_pred CCCeEEEEEccCCcchHHHHHHHHhcC-CCe
Q psy12711 103 KPNCRTFVFEKEGHTFGSVITHILQSY-PEV 132 (639)
Q Consensus 103 ~~N~~tf~i~gEDHTLGNlLR~~Llkd-p~V 132 (639)
+++.+.|.+.|-|.||||+||-.|+.. |.+
T Consensus 13 ~~~~~~F~l~g~~~tiaNALRRiLLSeVPt~ 43 (297)
T 3h0g_C 13 SKNSVDFVLTNTSLAVANSLRRVVLAEIPTV 43 (297)
T ss_dssp CSSEEEEEECSCCHHHHHHHHHHHHSSCCEE
T ss_pred cCCEEEEEEECCChhHHHHHHHHHHHcCccc
Confidence 578999999999999999999998864 443
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=57.48 E-value=4.4 Score=46.00 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=62.8
Q ss_pred EEeccCCH----HHHHHHHHhhhcCCceEEEecCCCCCCcchHHHHHHHH-----HhcceEEEEecccccCChhhHHHHH
Q psy12711 390 LLYDEADF----DLAKQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVM-----DRCTCVIVLMSTHFMNNSLLHSLTQ 460 (639)
Q Consensus 390 VsYS~kD~----dFV~eLv~~LE~~gykLCLh~RDflpG~~i~e~I~~aI-----erSRR~IvVLSpnFL~SeWc~fe~~ 460 (639)
+|+...|. .+++.+....|+....+|+--+++.-..+-...+..|. ++.+++|+|+=...-+
T Consensus 705 ~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~--------- 775 (844)
T 3j0a_A 705 LCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ--------- 775 (844)
T ss_dssp EECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS---------
T ss_pred EEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh---------
Confidence 34445553 35677888888888899999999987655444444443 5567788885222110
Q ss_pred HHHHHhhhhcCCCcEEEEEeccCCCCcccchhhhhhcccccccchhhHHHHHHHHhcc
Q psy12711 461 YAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKG 518 (639)
Q Consensus 461 ~A~~l~l~~r~~~kLIpIlye~~~~~P~~Lr~~~~ld~~~~~~~~~wFW~RLr~aL~~ 518 (639)
..+ + +... ....++-.++++|.......+|||++||+||+.
T Consensus 776 ------------~~~-~---~~~~-l~~~~~~~~~l~w~~~~~~~~~Fw~~l~~al~~ 816 (844)
T 3j0a_A 776 ------------YQL-M---KHQS-IRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILK 816 (844)
T ss_dssp ------------SSC-C---SCSS-TTHHHHTTCCCCCCSSSTTTTHHHHHHTTTTTS
T ss_pred ------------HHh-h---hhHH-HHHHHhhCCeeeCCCCchhHHHHHHHHHHHhcc
Confidence 111 0 0011 123455555666665555669999999999965
No 58
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=49.42 E-value=7.4 Score=40.60 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=25.4
Q ss_pred CCCeEEEEEc----cCCcchHHHHHHHHhcC-CCe
Q psy12711 103 KPNCRTFVFE----KEGHTFGSVITHILQSY-PEV 132 (639)
Q Consensus 103 ~~N~~tf~i~----gEDHTLGNlLR~~Llkd-p~V 132 (639)
+++.+.|.++ |-++||||+||-.|+.. |+.
T Consensus 17 ~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~ 51 (315)
T 2a6h_A 17 GREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGT 51 (315)
T ss_dssp TTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCce
Confidence 4789999995 99999999999998865 443
No 59
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.24 E-value=1.9e+02 Score=23.19 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHcCCCCCCCCCccchHHHHHHHhhccCCCCCCcccHHHHHHHHhhcccchhhhhchHHHH
Q psy12711 277 RGLADLMDIKAPPNPNCEDLMKKMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIE 341 (639)
Q Consensus 277 RgLAelmgf~~~~~e~~~~Pt~~vLe~W~~r~~~~~~~aTvg~Ll~~Le~idR~DVldD~~~~ie 341 (639)
..||+.+|++ ..-+..|+.-. ...++..|..+.+.++--|+++|+.+.+.
T Consensus 31 ~elA~~~gis-----------~~~is~~E~G~----~~p~~~~l~~ia~~l~v~~~~~~l~~~~~ 80 (86)
T 3eus_A 31 ADLAERLDKP-----------QSFVAKVETRE----RRLDVIEFAKWMAACEGLDVVSEIVATIA 80 (86)
T ss_dssp HHHHHHTTCC-----------HHHHHHHHTTS----SCCBHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhCcC-----------HHHHHHHHCCC----CCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 5799999985 34677787642 25688888888877777777776665544
Done!