Your job contains 1 sequence.
>psy12711
MLIEYLDSKILKKYRFQLFHSERQDNTSSTSTSIHRSKVQVQLLYMTEEQQLKPGLEQWC
FCFSIPTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGS
VITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITET
FNDAMQCKVILKLTLLVIQKASKNLRVLVIGSQKHSMMQCRNMDSNHDVEKYRYEDSMDY
IKIPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKM
FEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYYENTRLGNSISKNG
ACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQFNTQLNKMGFTVCDKDNS
FLTGQFEHSAFIQVMDRCTCVIVLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILC
SDDYFSVGFLQYCVKLKLNHYASNMEQFWDRLYYSLKGVGKGVPEWDFASNMEQFWDRLY
YSLKGVGKGSQKQAIQFQTTPTSMPVAPPDYTLSQQAVAPPDYTLPQQATNSQSITNNMS
EEKKDSMKKPMLMLTLQNGIRNTLKVFKPNKKKTKALCS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12711
(639 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086447 - symbol:l(2)37Cg "lethal (2) 37Cg" specie... 204 1.9e-15 1
FB|FBgn0033402 - symbol:Myd88 "Myd88" species:7227 "Droso... 141 1.2e-14 3
DICTYBASE|DDB_G0291362 - symbol:rpc19 "putative RNA polym... 196 1.4e-14 1
POMBASE|SPAC1687.01 - symbol:rpc19 "DNA-directed RNA poly... 187 1.3e-13 1
ASPGD|ASPL0000003267 - symbol:AN6558 species:162425 "Emer... 177 1.5e-12 1
WB|WBGene00010230 - symbol:rpac-19 species:6239 "Caenorha... 174 3.2e-12 1
GENEDB_PFALCIPARUM|PF14_0150 - symbol:PF14_0150 "RNA poly... 170 8.7e-12 1
UNIPROTKB|Q8ILU4 - symbol:PF14_0150 "RNA polymerase small... 170 8.7e-12 1
ZFIN|ZDB-GENE-040930-4 - symbol:polr1d "polymerase (RNA) ... 165 3.0e-11 1
UNIPROTKB|E1C277 - symbol:E1C277 "Uncharacterized protein... 163 4.9e-11 1
CGD|CAL0003206 - symbol:RPC19 species:5476 "Candida albic... 161 8.1e-11 1
MGI|MGI:108403 - symbol:Polr1d "polymerase (RNA) I polype... 161 8.1e-11 1
SGD|S000005057 - symbol:RPC19 "RNA polymerase subunit AC1... 161 8.1e-11 1
UNIPROTKB|E2RI73 - symbol:POLR1D "Uncharacterized protein... 160 1.0e-10 1
UNIPROTKB|F1RSW6 - symbol:POLR1D "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|I3LRD0 - symbol:POLR1D "Uncharacterized protein... 159 1.3e-10 1
UNIPROTKB|Q9Y2S0 - symbol:POLR1D "DNA-directed RNA polyme... 158 1.7e-10 1
UNIPROTKB|G3MYF3 - symbol:G3MYF3 "Uncharacterized protein... 157 2.2e-10 1
UNIPROTKB|Q1RMG8 - symbol:POLR1D "DNA-directed RNA polyme... 156 2.8e-10 1
MGI|MGI:109582 - symbol:Polr2j "polymerase (RNA) II (DNA ... 149 1.6e-09 1
UNIPROTKB|F1NFM7 - symbol:F1NFM7 "Uncharacterized protein... 147 2.6e-09 1
UNIPROTKB|Q32P79 - symbol:POLR2J "DNA-directed RNA polyme... 147 2.6e-09 1
UNIPROTKB|E2RD80 - symbol:LOC100686835 "Uncharacterized p... 147 2.6e-09 1
UNIPROTKB|P52435 - symbol:POLR2J "DNA-directed RNA polyme... 147 2.6e-09 1
UNIPROTKB|F1RKE4 - symbol:LOC100738785 "Uncharacterized p... 147 2.6e-09 1
UNIPROTKB|I3LS76 - symbol:LOC100738785 "Uncharacterized p... 147 2.6e-09 1
RGD|1310198 - symbol:Polr2j "polymerase (RNA) II (DNA dir... 147 2.6e-09 1
ZFIN|ZDB-GENE-050522-120 - symbol:polr2j "polymerase (RNA... 145 4.2e-09 1
UNIPROTKB|Q9GZM3 - symbol:POLR2J2 "DNA-directed RNA polym... 143 6.9e-09 1
UNIPROTKB|Q9H1A7 - symbol:POLR2J3 "DNA-directed RNA polym... 143 6.9e-09 1
UNIPROTKB|F1PXE5 - symbol:LOC100686835 "Uncharacterized p... 142 8.8e-09 1
UNIPROTKB|E2QRJ6 - symbol:POLR2J3 "DNA-directed RNA polym... 142 8.8e-09 1
UNIPROTKB|Q9H1A6 - symbol:POLR2J1 "DNA-directed RNA polym... 142 8.8e-09 1
FB|FBgn0032634 - symbol:Rpb11 "Rpb11" species:7227 "Droso... 138 2.4e-08 1
UNIPROTKB|F6W009 - symbol:POLR2J2 "DNA-directed RNA polym... 137 3.0e-08 1
UNIPROTKB|A6NFM0 - symbol:POLR2J2 "DNA-directed RNA polym... 136 3.9e-08 1
DICTYBASE|DDB_G0277677 - symbol:rpb11 "RNA polymerase II ... 126 4.6e-07 1
WB|WBGene00012187 - symbol:rpb-11 species:6239 "Caenorhab... 125 5.9e-07 1
UNIPROTKB|F1SBB9 - symbol:POLR2J "Uncharacterized protein... 124 7.5e-07 1
GENEDB_PFALCIPARUM|PF13_0023 - symbol:PF13_0023 "DNA-dire... 121 1.6e-06 1
UNIPROTKB|G4MRX6 - symbol:MGG_02463 "Uncharacterized prot... 121 1.6e-06 1
UNIPROTKB|Q8IER7 - symbol:PF13_0023 "Probable DNA-directe... 121 1.6e-06 1
SGD|S000005365 - symbol:RPB11 "RNA polymerase II subunit ... 121 1.6e-06 1
POMBASE|SPAC3A12.07 - symbol:rpb11 "RNA polymerase II com... 117 4.2e-06 1
ASPGD|ASPL0000009413 - symbol:AN4269 species:162425 "Emer... 103 0.00013 1
UNIPROTKB|F8WF84 - symbol:POLR2J3 "DNA-directed RNA polym... 97 0.00059 1
>FB|FBgn0086447 [details] [associations]
symbol:l(2)37Cg "lethal (2) 37Cg" species:7227 "Drosophila
melanogaster" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IC] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR008193 InterPro:IPR009025 InterPro:IPR011261
Pfam:PF01193 PROSITE:PS01154 GO:GO:0005875 EMBL:AE014134
GO:GO:0003677 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
GeneTree:ENSGT00550000075160 KO:K03020 EMBL:BT028781
RefSeq:NP_609950.1 UniGene:Dm.30851 ProteinModelPortal:Q9VIZ0
SMR:Q9VIZ0 IntAct:Q9VIZ0 MINT:MINT-296009 STRING:Q9VIZ0
PaxDb:Q9VIZ0 PRIDE:Q9VIZ0 EnsemblMetazoa:FBtr0081161 GeneID:35196
KEGG:dme:Dmel_CG10685 FlyBase:FBgn0086447 InParanoid:Q9VIZ0
OMA:QKLHFRI OrthoDB:EOG4RFJ95 PhylomeDB:Q9VIZ0 GenomeRNAi:35196
NextBio:792325 Bgee:Q9VIZ0 GermOnline:CG10685 Uniprot:Q9VIZ0
Length = 105
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 38/79 (48%), Positives = 52/79 (65%)
Query: 107 RTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKG 166
RTFVF EGHT G+ + I+ YPEVDF GY++PHP + ++ RIQ + +IDILK+G
Sbjct: 18 RTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDR-AIDILKRG 76
Query: 167 IKELESACDRITETFNDAM 185
+++LE CD TF M
Sbjct: 77 LEDLEGLCDHTIVTFEKEM 95
>FB|FBgn0033402 [details] [associations]
symbol:Myd88 "Myd88" species:7227 "Drosophila melanogaster"
[GO:0007165 "signal transduction" evidence=NAS] [GO:0006952
"defense response" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008063 "Toll signaling pathway"
evidence=IGI;TAS] [GO:0002804 "positive regulation of antifungal
peptide production" evidence=IDA] [GO:0005121 "Toll binding"
evidence=IPI] [GO:0050830 "defense response to Gram-positive
bacterium" evidence=IMP] [GO:0002781 "antifungal peptide
production" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0006965 "positive regulation of biosynthetic
process of antibacterial peptides active against Gram-positive
bacteria" evidence=NAS] [GO:0019732 "antifungal humoral response"
evidence=NAS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0006955 "immune response" evidence=TAS]
[GO:0009620 "response to fungus" evidence=TAS] [GO:0045087 "innate
immune response" evidence=NAS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005546 "phosphatidylinositol-4,5-bisphosphate
binding" evidence=IMP] InterPro:IPR000157 Pfam:PF13676
PROSITE:PS50104 EMBL:AE013599 GO:GO:0005886 GO:GO:0050830
GO:GO:0045087 GO:GO:0005622 GO:GO:0005546 GO:GO:0009953
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0008063
GO:GO:0002781 SUPFAM:SSF52200 HOGENOM:HOG000243425 CTD:4615
eggNOG:NOG70664 GeneTree:ENSGT00510000048324 KO:K04729
EMBL:AY069468 EMBL:AF422803 RefSeq:NP_610479.1 UniGene:Dm.2113
SMR:Q7K105 IntAct:Q7K105 STRING:Q7K105 EnsemblMetazoa:FBtr0088598
EnsemblMetazoa:FBtr0333000 GeneID:35956 KEGG:dme:Dmel_CG2078
UCSC:CG2078-RA FlyBase:FBgn0033402 InParanoid:Q7K105 OMA:LPRYNAC
OrthoDB:EOG4XKSPG GenomeRNAi:35956 NextBio:796054 GO:GO:0002804
Uniprot:Q7K105
Length = 537
Score = 141 (54.7 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 56/183 (30%), Positives = 83/183 (45%)
Query: 343 DCLYYENTRLGNSISKNGACMDDPSVITIEDVKSLNLGCGLAHYDALLLYDEADFDLAKQ 402
DC +E T S S N +++ ED + + +G L Y+A +LY EAD D A +
Sbjct: 203 DC--FE-TNNNYSSSNNITVGQSVQILSDEDQRCVQMGQPLPRYNACVLYAEADIDHATE 259
Query: 403 F--NTQLNKMGFTVCDKDNSFLTG-QFEHSAFIQVM-DRCTCVIVLMSTHFMN---NSLL 455
N + + + + L G FEH M RC +IV+++ F+ N+ L
Sbjct: 260 IMNNLESERYNLRLFLRHRDMLMGVPFEHVQLSHFMATRCNHLIVVLTEEFLRSPENTYL 319
Query: 456 HSLTQYAEAKHIDHTIHSKIIPILCSDDYFSVGFLQYCVKLKLNHYA--SNMEQFWDRLY 513
+ TQ + ++ HT KIIPIL D L +K YA S + FWD+L
Sbjct: 320 VNFTQKIQIEN--HT--RKIIPILYKTDMHIPQTLGIYTHIK---YAGDSKLFNFWDKLA 372
Query: 514 YSL 516
SL
Sbjct: 373 RSL 375
Score = 125 (49.1 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 244 PIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMKKMFED 303
P+ A+ +TR L+ L K L S E YQRD+RG+++L K + N + M +
Sbjct: 82 PLSALGIETRTQLSRMLNRKKVLRSEEGYQRDWRGISELAKQKGFVDENANNPMDLVLIS 141
Query: 304 WTKSSTLDRSVFNIATFLHFLECIDRFDVYDD 335
W++ S V ++ HFL IDR+DV DD
Sbjct: 142 WSQRSPQTAKVGHLE---HFLGIIDRWDVCDD 170
Score = 45 (20.9 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 530 SNMEQFWDRLYYSLKGVGKGSQKQAIQFQTTPTSMPVAPPDYT 572
S + FWD+L SL + S Q QT P+ + + P T
Sbjct: 362 SKLFNFWDKLARSLHDLDAFSIYSTRQVQT-PSPVEESAPRVT 403
>DICTYBASE|DDB_G0291362 [details] [associations]
symbol:rpc19 "putative RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=ISS]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
dictyBase:DDB_G0291362 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
KO:K03020 RefSeq:XP_635164.1 ProteinModelPortal:Q54ES6
STRING:Q54ES6 PRIDE:Q54ES6 EnsemblProtists:DDB0216286
GeneID:8628110 KEGG:ddi:DDB_G0291362 InParanoid:Q54ES6 OMA:FEDEGHT
Uniprot:Q54ES6
Length = 116
Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 33/83 (39%), Positives = 56/83 (67%)
Query: 103 KPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
+P+C TF+F E HT G+ + ++L P+VDF+GYS+PHP+D ++ +RIQ K + +
Sbjct: 32 RPDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQES 91
Query: 163 LKKGIKELESACDRITETFNDAM 185
L +G+ +++ I ETFN+A+
Sbjct: 92 LLQGLTDIKDISRHIFETFNNAL 114
>POMBASE|SPAC1687.01 [details] [associations]
symbol:rpc19 "DNA-directed RNA polymerase I and III
subunit Rpc19" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=IGI] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IGI] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
PomBase:SPAC1687.01 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
HOGENOM:HOG000179862 KO:K03020 EMBL:U50769 EMBL:AB013499
EMBL:AF116919 EMBL:AF079779 EMBL:AB017152 PIR:T43414
RefSeq:NP_593118.2 ProteinModelPortal:Q09177 STRING:Q09177
PRIDE:Q09177 EnsemblFungi:SPAC1687.01.1 GeneID:2542799
KEGG:spo:SPAC1687.01 OMA:ANHAANA OrthoDB:EOG4ZCXF3 NextBio:20803842
Uniprot:Q09177
Length = 125
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF +KE HT G+ + +++ PEV+F GYS+PHP++ ++ RIQ ++D+L+KG+
Sbjct: 36 TFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGL 95
Query: 168 KELESACDRITETFNDAM 185
+L CD +TE F + +
Sbjct: 96 DDLIDLCDAVTEKFTEQL 113
>ASPGD|ASPL0000003267 [details] [associations]
symbol:AN6558 species:162425 "Emericella nidulans"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 EMBL:BN001301 EMBL:AACD01000109 GO:GO:0003899
SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 KO:K03020
OrthoDB:EOG4ZCXF3 RefSeq:XP_664162.1 ProteinModelPortal:Q5AYS2
STRING:Q5AYS2 EnsemblFungi:CADANIAT00007332 GeneID:2870324
KEGG:ani:AN6558.2 OMA:CDVVTDK Uniprot:Q5AYS2
Length = 137
Score = 177 (67.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F FE EGHT G+ + + PEV+F GY++PHP++ ++ IRIQ D +++ L+KG+
Sbjct: 47 SFQFEGEGHTLGNALRFAIMKNPEVEFCGYTIPHPSESKMNIRIQTYDSTTAVEALEKGL 106
Query: 168 KELESACDRITETFNDA 184
L CD +T+ F A
Sbjct: 107 DTLMDLCDVVTDKFTAA 123
>WB|WBGene00010230 [details] [associations]
symbol:rpac-19 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] InterPro:IPR008193 InterPro:IPR009025
PROSITE:PS01154 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
EMBL:Z22179 GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
GeneTree:ENSGT00550000075160 KO:K03020 PIR:S40981
RefSeq:NP_499132.1 ProteinModelPortal:P34476 SMR:P34476
STRING:P34476 PaxDb:P34476 EnsemblMetazoa:F58A4.9.1
EnsemblMetazoa:F58A4.9.2 GeneID:176362 KEGG:cel:CELE_F58A4.9
UCSC:F58A4.9.2 CTD:176362 WormBase:F58A4.9 HOGENOM:HOG000154179
InParanoid:P34476 OMA:RMDEVEF NextBio:892254 Uniprot:P34476
Length = 144
Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 37/121 (30%), Positives = 61/121 (50%)
Query: 66 PTSTSSVNTSLCINYMESKQLENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHI 125
P T V+ +N K++E P + P+ T + +E HT G+ I HI
Sbjct: 26 PQETPQVDDEEDLNVPSKKKMEILDP------KSFEQDPSNLTLIMYEEDHTIGNSIKHI 79
Query: 126 LQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
L EV+F GY+VPHP + +I R+Q KDG +++++L K + +E I F ++
Sbjct: 80 LSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEESY 139
Query: 186 Q 186
+
Sbjct: 140 E 140
>GENEDB_PFALCIPARUM|PF14_0150 [details] [associations]
symbol:PF14_0150 "RNA polymerase small subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351
EMBL:AE014187 GO:GO:0003899 SUPFAM:SSF55257 HOGENOM:HOG000179862
KO:K03020 OMA:ANHAANA RefSeq:XP_001348323.1
ProteinModelPortal:Q8ILU4 EnsemblProtists:PF14_0150:mRNA
GeneID:811731 KEGG:pfa:PF14_0150 EuPathDB:PlasmoDB:PF3D7_1415200
ProtClustDB:CLSZ2434655 Uniprot:Q8ILU4
Length = 96
Score = 170 (64.9 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +IDILK+ +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTT-GKPAIDILKESL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + FN+A++
Sbjct: 76 DDLGNMCDIMLNKFNEALK 94
>UNIPROTKB|Q8ILU4 [details] [associations]
symbol:PF14_0150 "RNA polymerase small subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351
EMBL:AE014187 GO:GO:0003899 SUPFAM:SSF55257 HOGENOM:HOG000179862
KO:K03020 OMA:ANHAANA RefSeq:XP_001348323.1
ProteinModelPortal:Q8ILU4 EnsemblProtists:PF14_0150:mRNA
GeneID:811731 KEGG:pfa:PF14_0150 EuPathDB:PlasmoDB:PF3D7_1415200
ProtClustDB:CLSZ2434655 Uniprot:Q8ILU4
Length = 96
Score = 170 (64.9 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
TF FE E HT G+ + IL V+FAGY+VPHP +I +RIQ G +IDILK+ +
Sbjct: 17 TFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTT-GKPAIDILKESL 75
Query: 168 KELESACDRITETFNDAMQ 186
+L + CD + FN+A++
Sbjct: 76 DDLGNMCDIMLNKFNEALK 94
>ZFIN|ZDB-GENE-040930-4 [details] [associations]
symbol:polr1d "polymerase (RNA) I polypeptide D"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 InterPro:IPR011261 Pfam:PF01193 PROSITE:PS01154
ZFIN:ZDB-GENE-040930-4 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 SUPFAM:SSF55257 CTD:51082 eggNOG:COG1761
GeneTree:ENSGT00550000075160 HOGENOM:HOG000179862
HOVERGEN:HBG001176 KO:K03020 OMA:EPFRKGL OrthoDB:EOG4WSWBZ
EMBL:AY648775 EMBL:BC115138 IPI:IPI00507211 RefSeq:NP_001003888.1
UniGene:Dr.32141 ProteinModelPortal:Q6DRI4 STRING:Q6DRI4
PRIDE:Q6DRI4 Ensembl:ENSDART00000054710 GeneID:445412
KEGG:dre:445412 InParanoid:A4FUL5 NextBio:20832116 Bgee:Q6DRI4
Uniprot:Q6DRI4
Length = 112
Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +++ +V+F GYS+ HP++ +I RIQ +DG + + L+
Sbjct: 22 CVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRN 81
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ L C + +TF M+
Sbjct: 82 GLNNLTDVCKHVLQTFEARMK 102
>UNIPROTKB|E1C277 [details] [associations]
symbol:E1C277 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000075160 OMA:EPFRKGL EMBL:AADN02013504
IPI:IPI00595896 Ensembl:ENSGALT00000032339 Uniprot:E1C277
Length = 119
Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
NC TFV E HT G+ + +++ P+V+F GY + HP++ +I RIQ + +++ +
Sbjct: 22 NCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSLPAVEPFR 81
Query: 165 KGIKELESACDRITETF 181
KG+ +L C + +TF
Sbjct: 82 KGLNDLMGVCQHVLDTF 98
>CGD|CAL0003206 [details] [associations]
symbol:RPC19 species:5476 "Candida albicans" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
CGD:CAL0003206 GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000245
EMBL:AACQ01000246 GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
KO:K03020 RefSeq:XP_710695.1 RefSeq:XP_710709.1
ProteinModelPortal:Q59LT9 STRING:Q59LT9 GeneID:3647693
GeneID:3647706 KEGG:cal:CaO19.172 KEGG:cal:CaO19.7805
Uniprot:Q59LT9
Length = 131
Score = 161 (61.7 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F E HT G+ + +I+ PEV+F GYS+PHP++ ++ IRIQ +++ L +G+
Sbjct: 44 SFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQGL 103
Query: 168 KELESACDRITETFNDAMQ 186
L C I + F+DA++
Sbjct: 104 DNLSELCGAIEDKFDDAIK 122
>MGI|MGI:108403 [details] [associations]
symbol:Polr1d "polymerase (RNA) I polypeptide D"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] Reactome:REACT_78136
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
MGI:MGI:108403 GO:GO:0005654 GO:GO:0003677 GO:GO:0006351
GO:GO:0005736 GO:GO:0003899 Reactome:REACT_86751 SUPFAM:SSF55257
CTD:51082 eggNOG:COG1761 HOGENOM:HOG000179862 HOVERGEN:HBG001176
KO:K03020 OMA:EPFRKGL OrthoDB:EOG4WSWBZ ChiTaRS:POLR1D EMBL:D86609
IPI:IPI00123842 RefSeq:NP_033113.1 UniGene:Mm.317557
ProteinModelPortal:P97304 SMR:P97304 STRING:P97304
PhosphoSite:P97304 PaxDb:P97304 PRIDE:P97304
Ensembl:ENSMUST00000050970 GeneID:20018 KEGG:mmu:20018
InParanoid:P97304 NextBio:297525 Bgee:P97304 Genevestigator:P97304
GermOnline:ENSMUSG00000029642 Uniprot:P97304
Length = 133
Score = 161 (61.7 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 106 CRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
C TFV +E HT G+ + +I+ PEV+F GY+ HP++ +I +RIQ + +++ +K
Sbjct: 39 CVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQK 98
Query: 166 GIKELESACDRITETFNDAMQ 186
G+ EL + C + F +++
Sbjct: 99 GLNELLNVCQHVLVKFEASIK 119
>SGD|S000005057 [details] [associations]
symbol:RPC19 "RNA polymerase subunit AC19" species:4932
"Saccharomyces cerevisiae" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;IDA] [GO:0042797 "tRNA transcription from
RNA polymerase III promoter" evidence=IDA] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=IC]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
SGD:S000005057 GO:GO:0003677 EMBL:BK006947 EMBL:Z69382
GO:GO:0006360 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 EMBL:M64991
Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
SUPFAM:SSF55257 eggNOG:COG1761 GeneTree:ENSGT00550000075160
HOGENOM:HOG000179862 KO:K03020 OMA:RMDEVEF OrthoDB:EOG4ZCXF3
EMBL:Z71390 EMBL:AY558001 PIR:A39418 RefSeq:NP_014286.1
ProteinModelPortal:P28000 SMR:P28000 DIP:DIP-130N IntAct:P28000
MINT:MINT-391927 STRING:P28000 PaxDb:P28000 PeptideAtlas:P28000
EnsemblFungi:YNL113W GeneID:855609 KEGG:sce:YNL113W CYGD:YNL113w
NextBio:979786 Genevestigator:P28000 GermOnline:YNL113W
Uniprot:P28000
Length = 142
Score = 161 (61.7 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 108 TFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGI 167
+F +E HT G+ + +++ P+V+F GYS+PHP++ + IRIQ ++D L+KG+
Sbjct: 62 SFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGL 121
Query: 168 KELESACDRITETFNDAMQ 186
K+L CD + F + ++
Sbjct: 122 KDLMDLCDVVESKFTEKIK 140
>UNIPROTKB|E2RI73 [details] [associations]
symbol:POLR1D "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257 CTD:51082
GeneTree:ENSGT00550000075160 KO:K03020 OMA:EPFRKGL
EMBL:AAEX03014243 RefSeq:XP_003433343.1 ProteinModelPortal:E2RI73
Ensembl:ENSCAFT00000010876 GeneID:100686016 KEGG:cfa:100686016
Uniprot:E2RI73
Length = 133
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>UNIPROTKB|F1RSW6 [details] [associations]
symbol:POLR1D "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 SUPFAM:SSF55257 GeneTree:ENSGT00550000075160
EMBL:CU633812 Ensembl:ENSSSCT00000010198 Uniprot:F1RSW6
Length = 130
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 35 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 94
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 95 RGLTELMNVCQHVLDKFEASIK 116
>UNIPROTKB|I3LRD0 [details] [associations]
symbol:POLR1D "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000075160 OMA:EPFRKGL EMBL:CU633812
Ensembl:ENSSSCT00000025665 Uniprot:I3LRD0
Length = 139
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 44 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 103
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 104 RGLTELMNVCQHVLDKFEASIK 125
>UNIPROTKB|Q9Y2S0 [details] [associations]
symbol:POLR1D "DNA-directed RNA polymerases I and III
subunit RPAC2" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0005654
GO:GO:0003677 EMBL:CH471075 Reactome:REACT_1788 GO:GO:0006363
GO:GO:0006362 GO:GO:0006361 GO:GO:0003899 GO:GO:0006386
GO:GO:0006385 SUPFAM:SSF55257 Orphanet:861 CTD:51082 eggNOG:COG1761
HOGENOM:HOG000179862 HOVERGEN:HBG001176 KO:K03020 OMA:EPFRKGL
OrthoDB:EOG4WSWBZ EMBL:AF077044 EMBL:AK311833 EMBL:AL136439
EMBL:BC000889 EMBL:BC015319 EMBL:BC018528 IPI:IPI00032439
IPI:IPI00643892 RefSeq:NP_001193488.1 RefSeq:NP_057056.1
RefSeq:NP_689918.1 UniGene:Hs.507584 UniGene:Hs.735744
ProteinModelPortal:Q9Y2S0 SMR:Q9Y2S0 DIP:DIP-27598N IntAct:Q9Y2S0
MINT:MINT-1149665 STRING:Q9Y2S0 PhosphoSite:Q9Y2S0 DMDM:11387119
SWISS-2DPAGE:Q9Y2S0 PaxDb:Q9Y2S0 PeptideAtlas:Q9Y2S0 PRIDE:Q9Y2S0
DNASU:51082 Ensembl:ENST00000302979 Ensembl:ENST00000399696
Ensembl:ENST00000399697 GeneID:51082 KEGG:hsa:51082 UCSC:uc001uro.3
UCSC:uc001urp.3 GeneCards:GC13P028194 HGNC:HGNC:20422 HPA:HPA039337
MIM:613715 MIM:613717 neXtProt:NX_Q9Y2S0 PharmGKB:PA134914527
PhylomeDB:Q9Y2S0 ChiTaRS:POLR1D GenomeRNAi:51082 NextBio:53727
ArrayExpress:Q9Y2S0 Bgee:Q9Y2S0 CleanEx:HS_POLR1D
Genevestigator:Q9Y2S0 GermOnline:ENSG00000186184 Uniprot:Q9Y2S0
Length = 133
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 25/82 (30%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ EL + C + + F +++
Sbjct: 98 RGLNELMNVCQHVLDKFEASIK 119
>UNIPROTKB|G3MYF3 [details] [associations]
symbol:G3MYF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 SUPFAM:SSF55257 GeneTree:ENSGT00550000075160
EMBL:DAAA02042675 Ensembl:ENSBTAT00000066201 OMA:TEEDHTI
Uniprot:G3MYF3
Length = 133
Score = 157 (60.3 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L + C + + F +++
Sbjct: 98 RGVTDLMNVCQHVLDKFEASIK 119
>UNIPROTKB|Q1RMG8 [details] [associations]
symbol:POLR1D "DNA-directed RNA polymerases I and III
subunit RPAC2" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
EMBL:BC114905 IPI:IPI00690140 RefSeq:NP_001069612.1
UniGene:Bt.88134 ProteinModelPortal:Q1RMG8 STRING:Q1RMG8
PRIDE:Q1RMG8 Ensembl:ENSBTAT00000047251 GeneID:539061
KEGG:bta:539061 CTD:51082 eggNOG:COG1761
GeneTree:ENSGT00550000075160 HOGENOM:HOG000179862
HOVERGEN:HBG001176 InParanoid:Q1RMG8 KO:K03020 OMA:EPFRKGL
OrthoDB:EOG4WSWBZ NextBio:20877753 ArrayExpress:Q1RMG8
Uniprot:Q1RMG8
Length = 133
Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
+C TFV +E HT G+ + +++ PEV+F GY+ HP++ +I +RIQ + +++ +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 165 KGIKELESACDRITETFNDAMQ 186
+G+ +L + C + + F +++
Sbjct: 98 RGLTDLMNVCQHVLDKFEASIK 119
>MGI|MGI:109582 [details] [associations]
symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide
J" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006468 "protein phosphorylation" evidence=ISO] [GO:0030275
"LRR domain binding" evidence=ISO] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 MGI:MGI:109582 GO:GO:0003677
GO:GO:0006351 GO:GO:0005666 GO:GO:0003899 SUPFAM:SSF55257
eggNOG:COG1761 HOGENOM:HOG000179862 HOVERGEN:HBG073419
OrthoDB:EOG4FJ8B1 ChiTaRS:POLR2J EMBL:D85818 IPI:IPI00115552
UniGene:Mm.4896 ProteinModelPortal:O08740 SMR:O08740 STRING:O08740
PhosphoSite:O08740 PaxDb:O08740 PRIDE:O08740 InParanoid:O08740
CleanEx:MM_POLR2J Genevestigator:O08740
GermOnline:ENSMUSG00000039771 Uniprot:O08740
Length = 117
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRGAIKDK 112
>UNIPROTKB|F1NFM7 [details] [associations]
symbol:F1NFM7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030275 "LRR domain binding" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000074975 OMA:IVRIHTM EMBL:AADN02025975
IPI:IPI00813937 Ensembl:ENSGALT00000002880 Uniprot:F1NFM7
Length = 100
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 11 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 70
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 71 TNAITDLISELSLLEERFRVAIKDK 95
>UNIPROTKB|Q32P79 [details] [associations]
symbol:POLR2J "DNA-directed RNA polymerase II subunit
RPB11" species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0004672 "protein
kinase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0030275 "LRR domain binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0004672
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257
eggNOG:COG1761 HOGENOM:HOG000179862 EMBL:BC108226 IPI:IPI00705274
RefSeq:NP_001032560.1 UniGene:Bt.748 ProteinModelPortal:Q32P79
SMR:Q32P79 STRING:Q32P79 Ensembl:ENSBTAT00000007165 GeneID:540428
KEGG:bta:540428 CTD:5439 GeneTree:ENSGT00550000074975
HOVERGEN:HBG073419 InParanoid:Q32P79 KO:K03008 OMA:NTMANSS
OrthoDB:EOG4FJ8B1 NextBio:20878632 Uniprot:Q32P79
Length = 117
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>UNIPROTKB|E2RD80 [details] [associations]
symbol:LOC100686835 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000074975 KO:K03008 EMBL:AAEX03004255
RefSeq:XP_003434782.1 ProteinModelPortal:E2RD80 SMR:E2RD80
Ensembl:ENSCAFT00000038247 GeneID:100686835 KEGG:cfa:100686835
Uniprot:E2RD80
Length = 117
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>UNIPROTKB|P52435 [details] [associations]
symbol:POLR2J "DNA-directed RNA polymerase II subunit
RPB11-a" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0030275 "LRR domain binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 EMBL:AC093668 GO:GO:0005665 SUPFAM:SSF55257
eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439 HOVERGEN:HBG073419
KO:K03008 OrthoDB:EOG4FJ8B1 EMBL:X82385 EMBL:L37127 EMBL:X98433
EMBL:AK290515 EMBL:BC024165 EMBL:BC065711 EMBL:BC139902
EMBL:BC141830 IPI:IPI00939577 PIR:S71325 RefSeq:NP_006225.1
UniGene:Hs.654952 ProteinModelPortal:P52435 SMR:P52435
DIP:DIP-32913N IntAct:P52435 MINT:MINT-131416 STRING:P52435
PhosphoSite:P52435 DMDM:1710661 PaxDb:P52435 PRIDE:P52435
DNASU:5439 Ensembl:ENST00000292614 GeneID:5439 KEGG:hsa:5439
UCSC:uc003uzp.1 GeneCards:GC07M102113 H-InvDB:HIX0025314
HGNC:HGNC:9197 MIM:604150 neXtProt:NX_P52435 PharmGKB:PA33517
ChiTaRS:POLR2J GenomeRNAi:5439 NextBio:21045 ArrayExpress:P52435
Bgee:P52435 CleanEx:HS_POLR2J Genevestigator:P52435
GermOnline:ENSG00000005075 Uniprot:P52435
Length = 117
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>UNIPROTKB|F1RKE4 [details] [associations]
symbol:LOC100738785 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000074975 EMBL:FP326723
Ensembl:ENSSSCT00000008429 OMA:IVRIHTM Uniprot:F1RKE4
Length = 100
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 11 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 70
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 71 TNAITDLISELSLLEERFRVAIKDK 95
>UNIPROTKB|I3LS76 [details] [associations]
symbol:LOC100738785 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000074975 EMBL:FP326723 EMBL:CU861964
Ensembl:ENSSSCT00000024156 OMA:RXITINK Uniprot:I3LS76
Length = 117
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>RGD|1310198 [details] [associations]
symbol:Polr2j "polymerase (RNA) II (DNA directed) polypeptide J"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0030275 "LRR domain binding" evidence=IEA;ISO]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 RGD:1310198
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 EMBL:CH473973
GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257 CTD:5439
GeneTree:ENSGT00550000074975 KO:K03008 OMA:NTMANSS
OrthoDB:EOG4FJ8B1 EMBL:AC091617 IPI:IPI00370707
RefSeq:NP_001099391.1 UniGene:Rn.816 SMR:D3ZQI0
Ensembl:ENSRNOT00000001941 GeneID:288588 KEGG:rno:288588
UCSC:RGD:1310198 NextBio:628366 Uniprot:D3ZQI0
Length = 117
Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 32/85 (37%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>ZFIN|ZDB-GENE-050522-120 [details] [associations]
symbol:polr2j "polymerase (RNA) II (DNA directed)
polypeptide J" species:7955 "Danio rerio" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
ZFIN:ZDB-GENE-050522-120 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862 CTD:5439
GeneTree:ENSGT00550000074975 HOVERGEN:HBG073419 KO:K03008
OrthoDB:EOG4FJ8B1 OMA:MNAPDRF EMBL:BX294180 EMBL:BC095123
IPI:IPI00487591 RefSeq:NP_001019571.1 UniGene:Dr.86671 SMR:Q4VBU5
STRING:Q4VBU5 Ensembl:ENSDART00000050902 GeneID:554099
KEGG:dre:554099 InParanoid:Q4VBU5 NextBio:20880666 Uniprot:Q4VBU5
Length = 117
Score = 145 (56.1 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 31/85 (36%), Positives = 43/85 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + ++ IR+Q Y +
Sbjct: 28 PNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E F A++ K
Sbjct: 88 TNAITDLISELSLLEERFRVAIKDK 112
>UNIPROTKB|Q9GZM3 [details] [associations]
symbol:POLR2J2 "DNA-directed RNA polymerase II subunit
RPB11-b1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 UniGene:Hs.656696
SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862
HOVERGEN:HBG073419 KO:K03008 EMBL:AJ277931 EMBL:AJ277739
EMBL:AJ277740 EMBL:BC086857 IPI:IPI00016841 IPI:IPI00884938
RefSeq:NP_001091084.2 UniGene:Hs.610255 UniGene:Hs.700609
UniGene:Hs.732239 ProteinModelPortal:Q9GZM3 SMR:Q9GZM3
STRING:Q9GZM3 PhosphoSite:Q9GZM3 DMDM:74725005 PaxDb:Q9GZM3
DNASU:548644 GeneID:548644 KEGG:hsa:548644 UCSC:uc011kkw.1
CTD:246721 CTD:548644 GeneCards:GC07M102179 HGNC:HGNC:23208
MIM:609881 neXtProt:NX_Q9GZM3 PharmGKB:PA164724655
GenomeRNAi:548644 NextBio:112313 ArrayExpress:Q9GZM3 Bgee:Q9GZM3
Genevestigator:Q9GZM3 Uniprot:Q9GZM3
Length = 115
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAM 185
I +L S + E F +
Sbjct: 87 TNAITDLISELSLLEERFRTCL 108
>UNIPROTKB|Q9H1A7 [details] [associations]
symbol:POLR2J3 "DNA-directed RNA polymerase II subunit
RPB11-b2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AC004084
UniGene:Hs.656696 SUPFAM:SSF55257 HOVERGEN:HBG073419
UniGene:Hs.610255 UniGene:Hs.700609 UniGene:Hs.732239
NextBio:112313 EMBL:AJ277741 IPI:IPI00556199
ProteinModelPortal:Q9H1A7 SMR:Q9H1A7 STRING:Q9H1A7
PhosphoSite:Q9H1A7 DMDM:74725032 PRIDE:Q9H1A7
Ensembl:ENST00000379340 GeneCards:GC07M102178 HGNC:HGNC:33853
neXtProt:NX_Q9H1A7 PharmGKB:PA164724678 ArrayExpress:Q9H1A7
Bgee:Q9H1A7 Genevestigator:Q9H1A7 Uniprot:Q9H1A7
Length = 115
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAM 185
I +L S + E F +
Sbjct: 87 TNAITDLISELSLLEERFRTCL 108
>UNIPROTKB|F1PXE5 [details] [associations]
symbol:LOC100686835 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 SUPFAM:SSF55257
GeneTree:ENSGT00550000074975 OMA:MNAPDRF EMBL:AAEX03004255
Ensembl:ENSCAFT00000021705 Uniprot:F1PXE5
Length = 130
Score = 142 (55.0 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 49 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 108
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 109 TNAITDLISELSLLEERF 126
>UNIPROTKB|E2QRJ6 [details] [associations]
symbol:POLR2J3 "DNA-directed RNA polymerase II subunit
RPB11-b2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AC105052
EMBL:AC093668 SUPFAM:SSF55257 OMA:MNAPDRF HGNC:HGNC:33853
IPI:IPI00983105 ProteinModelPortal:E2QRJ6 SMR:E2QRJ6
Ensembl:ENST00000489144 ArrayExpress:E2QRJ6 Bgee:E2QRJ6
Uniprot:E2QRJ6
Length = 158
Score = 142 (55.0 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 87 TNAITDLISELSLLEERF 104
>UNIPROTKB|Q9H1A6 [details] [associations]
symbol:POLR2J1 "DNA-directed RNA polymerase II subunit
RPB11-a" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AC093668
SUPFAM:SSF55257 HOGENOM:HOG000179862 HOVERGEN:HBG073419 OMA:NTMANSS
UniGene:Hs.654952 HGNC:HGNC:9197 ChiTaRS:POLR2J EMBL:AJ277932
EMBL:AJ277928 EMBL:AJ277929 EMBL:AJ277930 IPI:IPI00003310
HSSP:P38902 SMR:Q9H1A6 STRING:Q9H1A6 Ensembl:ENST00000393794
Uniprot:Q9H1A6
Length = 127
Score = 142 (55.0 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 28 PNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 87
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 88 TNAITDLISELSLLEERF 105
>FB|FBgn0032634 [details] [associations]
symbol:Rpb11 "Rpb11" species:7227 "Drosophila melanogaster"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 EMBL:AE014134 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 SUPFAM:SSF55257
eggNOG:COG1761 GeneTree:ENSGT00550000074975 KO:K03008 OMA:MNAPDRF
RefSeq:NP_609836.1 ProteinModelPortal:Q9VJE4 SMR:Q9VJE4
DIP:DIP-20854N IntAct:Q9VJE4 MINT:MINT-877703 STRING:Q9VJE4
PaxDb:Q9VJE4 PRIDE:Q9VJE4 EnsemblMetazoa:FBtr0081011 GeneID:35043
KEGG:dme:Dmel_CG6840 UCSC:CG6840-RA CTD:35043 FlyBase:FBgn0032634
InParanoid:Q9VJE4 OrthoDB:EOG4B2RDN PhylomeDB:Q9VJE4
GenomeRNAi:35043 NextBio:791526 Bgee:Q9VJE4 GermOnline:CG6840
Uniprot:Q9VJE4
Length = 117
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 105 NCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILK 164
N F KE HT G++I + L P V FAGY VPHP + + IRIQ Y +
Sbjct: 29 NAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFM 88
Query: 165 KGIKELESACDRITETFNDAMQCK 188
I +L + E F DA++ K
Sbjct: 89 NAITDLLAELSLFEERFKDAIKEK 112
>UNIPROTKB|F6W009 [details] [associations]
symbol:POLR2J2 "DNA-directed RNA polymerase II subunit
RPB11-b1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AC105052
EMBL:AC093668 UniGene:Hs.656696 SUPFAM:SSF55257 KO:K03008
UniGene:Hs.610255 UniGene:Hs.700609 UniGene:Hs.732239 CTD:246721
HGNC:HGNC:23208 IPI:IPI00935876 RefSeq:NP_116581.3 SMR:F6W009
Ensembl:ENST00000444969 Ensembl:ENST00000476151
Ensembl:ENST00000591000 GeneID:246721 KEGG:hsa:246721
UCSC:uc003vah.3 GenomeRNAi:246721 NextBio:91953 Uniprot:F6W009
Length = 115
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/82 (35%), Positives = 39/82 (47%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETFNDAM 185
I +L S + E F +
Sbjct: 87 TNAITDLISELSLLEERFRTCL 108
>UNIPROTKB|A6NFM0 [details] [associations]
symbol:POLR2J2 "DNA-directed RNA polymerase II subunit
RPB11-b1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AC105052
EMBL:AC093668 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862
HOVERGEN:HBG073419 HGNC:HGNC:23208 IPI:IPI00854665
ProteinModelPortal:A6NFM0 SMR:A6NFM0 STRING:A6NFM0 PaxDb:A6NFM0
PRIDE:A6NFM0 Ensembl:ENST00000358438 OMA:CSASMNA
ArrayExpress:A6NFM0 Bgee:A6NFM0 Uniprot:A6NFM0
Length = 158
Score = 136 (52.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
P F KE HT G++I L P+V FAGY VPHP + +I IR+Q Y +
Sbjct: 27 PKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAF 86
Query: 164 KKGIKELESACDRITETF 181
I +L S + E F
Sbjct: 87 TNAITDLISELSLLEERF 104
>DICTYBASE|DDB_G0277677 [details] [associations]
symbol:rpb11 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
InterPro:IPR011261 Pfam:PF01193 PROSITE:PS01154
dictyBase:DDB_G0277677 GO:GO:0003677 GenomeReviews:CM000151_GR
GO:GO:0006366 EMBL:AAFI02000021 GO:GO:0003899 GO:GO:0005665
SUPFAM:SSF55257 eggNOG:COG1761 KO:K03008 OMA:MNAPDRF
RefSeq:XP_642530.2 ProteinModelPortal:Q86JJ5 STRING:Q86JJ5
PRIDE:Q86JJ5 EnsemblProtists:DDB0216285 GeneID:8621156
KEGG:ddi:DDB_G0277677 ProtClustDB:CLSZ2431578 Uniprot:Q86JJ5
Length = 120
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 29/102 (28%), Positives = 53/102 (51%)
Query: 87 ENSSPVWELRDNTLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQ 146
+ + V +RD + PN F KE HT G++I L + ++ FAGY +PHP +
Sbjct: 14 DGAKKVTMVRDTKI---PNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHN 70
Query: 147 IFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAMQCK 188
+ IRIQ + + ++ ++K ++ L + +F + +Q K
Sbjct: 71 VNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKK 112
>WB|WBGene00012187 [details] [associations]
symbol:rpb-11 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR008193 InterPro:IPR009025
PROSITE:PS01154 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0048477 GO:GO:0006351 GO:GO:0040035 GO:GO:0040027
GO:GO:0003899 EMBL:Z81135 SUPFAM:SSF55257 eggNOG:COG1761
HOGENOM:HOG000179862 GeneTree:ENSGT00550000074975 KO:K03008
PIR:T26065 RefSeq:NP_496942.1 ProteinModelPortal:Q9XVH6 SMR:Q9XVH6
IntAct:Q9XVH6 STRING:Q9XVH6 PaxDb:Q9XVH6 EnsemblMetazoa:W01G7.3.1
EnsemblMetazoa:W01G7.3.2 GeneID:175056 KEGG:cel:CELE_W01G7.3
CTD:175056 WormBase:W01G7.3 InParanoid:Q9XVH6 OMA:MNAPDRF
NextBio:886578 Uniprot:Q9XVH6
Length = 122
Score = 125 (49.1 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F KE HT G+++ L PEV FAGY PHP + +I +RIQ + D L
Sbjct: 27 PNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADAL 86
Query: 164 KKGIKEL 170
I +L
Sbjct: 87 TTAITDL 93
>UNIPROTKB|F1SBB9 [details] [associations]
symbol:POLR2J "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009025
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 SUPFAM:SSF55257 GeneTree:ENSGT00550000074975
EMBL:CU463086 Ensembl:ENSSSCT00000004102 OMA:KPEAHEL Uniprot:F1SBB9
Length = 116
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/85 (35%), Positives = 42/85 (49%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN F +KE HT G+VI L P+V FAG VPHP + +I + +Q Y + L
Sbjct: 27 PNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEAL 86
Query: 164 KKGIKELESACDRITETFNDAMQCK 188
I +L S + E A++ K
Sbjct: 87 LNVITDLISKLSLLEERLRVAIKDK 111
>GENEDB_PFALCIPARUM|PF13_0023 [details] [associations]
symbol:PF13_0023 "DNA-directed RNA polymerase
2, putative" species:5833 "Plasmodium falciparum" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006366 GO:GO:0016591 EMBL:AL844509
GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862
KO:K03008 RefSeq:XP_001349775.1 ProteinModelPortal:Q8IER7
PRIDE:Q8IER7 EnsemblProtists:PF13_0023:mRNA GeneID:814002
KEGG:pfa:PF13_0023 EuPathDB:PlasmoDB:PF3D7_1304900
ProtClustDB:CLSZ2432833 Uniprot:Q8IER7
Length = 126
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/88 (34%), Positives = 44/88 (50%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
T++ K +C FV + E HT G++I L P+V FA Y PHP I I I+ K GY
Sbjct: 28 TISDKGDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPK-GYA 86
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
+ +L + + S + E F +Q
Sbjct: 87 GVKLLSDNVNNILSQVATLKENFAKKIQ 114
>UNIPROTKB|G4MRX6 [details] [associations]
symbol:MGG_02463 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
GO:GO:0003677 GO:GO:0006351 EMBL:CM001231 GO:GO:0003899
SUPFAM:SSF55257 KO:K03008 RefSeq:XP_003709257.1
ProteinModelPortal:G4MRX6 EnsemblFungi:MGG_02463T0 GeneID:2681560
KEGG:mgr:MGG_02463 Uniprot:G4MRX6
Length = 130
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 91 PVWELRDNTLNVK-PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFI 149
P E T+N N F F+KE HT G+++T L+ +P V AGY V HP + F+
Sbjct: 14 PGEEKLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFL 73
Query: 150 RIQVKDG 156
RIQ DG
Sbjct: 74 RIQT-DG 79
>UNIPROTKB|Q8IER7 [details] [associations]
symbol:PF13_0023 "Probable DNA-directed RNA polymerase II
subunit RPB11" species:36329 "Plasmodium falciparum 3D7"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] InterPro:IPR008193 InterPro:IPR009025
PROSITE:PS01154 GO:GO:0003677 GO:GO:0006366 GO:GO:0016591
EMBL:AL844509 GO:GO:0003899 SUPFAM:SSF55257 eggNOG:COG1761
HOGENOM:HOG000179862 KO:K03008 RefSeq:XP_001349775.1
ProteinModelPortal:Q8IER7 PRIDE:Q8IER7
EnsemblProtists:PF13_0023:mRNA GeneID:814002 KEGG:pfa:PF13_0023
EuPathDB:PlasmoDB:PF3D7_1304900 ProtClustDB:CLSZ2432833
Uniprot:Q8IER7
Length = 126
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/88 (34%), Positives = 44/88 (50%)
Query: 99 TLNVKPNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYD 158
T++ K +C FV + E HT G++I L P+V FA Y PHP I I I+ K GY
Sbjct: 28 TISDKGDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPK-GYA 86
Query: 159 SIDILKKGIKELESACDRITETFNDAMQ 186
+ +L + + S + E F +Q
Sbjct: 87 GVKLLSDNVNNILSQVATLKENFAKKIQ 114
>SGD|S000005365 [details] [associations]
symbol:RPB11 "RNA polymerase II subunit B12.5" species:4932
"Saccharomyces cerevisiae" [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR008193 InterPro:IPR009025 PROSITE:PS01154
SGD:S000005365 EMBL:BK006948 GO:GO:0003677 GO:GO:0006369
GO:GO:0003899 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
SUPFAM:SSF55257 eggNOG:COG1761 HOGENOM:HOG000179862
GeneTree:ENSGT00550000074975 KO:K03008 OMA:MNAPDRF
OrthoDB:EOG45HW74 EMBL:S62624 EMBL:Z74747 EMBL:AY557998 PIR:S58933
RefSeq:NP_014638.1 ProteinModelPortal:P38902 SMR:P38902
DIP:DIP-937N IntAct:P38902 MINT:MINT-618340 STRING:P38902
PaxDb:P38902 PeptideAtlas:P38902 EnsemblFungi:YOL005C GeneID:854157
KEGG:sce:YOL005C CYGD:YOL005c EvolutionaryTrace:P38902
NextBio:975923 Genevestigator:P38902 GermOnline:YOL005C
Uniprot:P38902
Length = 120
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/67 (40%), Positives = 35/67 (52%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDAL 87
Query: 164 KKGIKEL 170
K +
Sbjct: 88 KNACNSI 94
>POMBASE|SPAC3A12.07 [details] [associations]
symbol:rpb11 "RNA polymerase II complex subunit Rpb11"
species:4896 "Schizosaccharomyces pombe" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IC]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IDA] InterPro:IPR008193
InterPro:IPR009025 InterPro:IPR011261 Pfam:PF01193 PROSITE:PS01154
PomBase:SPAC3A12.07 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 PDB:3H0G PDBsum:3H0G SUPFAM:SSF55257 eggNOG:COG1761
HOGENOM:HOG000179862 KO:K03008 EMBL:D89597 EMBL:D85902
EMBL:AF027822 PIR:T38675 RefSeq:NP_593333.1
ProteinModelPortal:P87123 IntAct:P87123 MINT:MINT-1214295
STRING:P87123 EnsemblFungi:SPAC3A12.07.1 GeneID:2543112
KEGG:spo:SPAC3A12.07 OMA:EDTKIPN OrthoDB:EOG45HW74
EvolutionaryTrace:P87123 NextBio:20804139 Uniprot:P87123
Length = 123
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN EKE HT +++ + L S V FAGY VPHP + +R+Q + ++
Sbjct: 27 PNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVI 86
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
K L + + I F + K+I
Sbjct: 87 VDAAKSLITHLEEIKVNFMREWELKMI 113
>ASPGD|ASPL0000009413 [details] [associations]
symbol:AN4269 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] InterPro:IPR008193
InterPro:IPR009025 PROSITE:PS01154 GO:GO:0003677 GO:GO:0006351
EMBL:BN001302 GO:GO:0003899 EMBL:AACD01000069 SUPFAM:SSF55257
eggNOG:COG1761 HOGENOM:HOG000179862 KO:K03008 OMA:MNAPDRF
OrthoDB:EOG45HW74 RefSeq:XP_661873.1 ProteinModelPortal:Q5B5B1
STRING:Q5B5B1 EnsemblFungi:CADANIAT00004385 GeneID:2873690
KEGG:ani:AN4269.2 Uniprot:Q5B5B1
Length = 129
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 104 PNCRTFVFEKEGHTFGSVI-THILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDI 162
P+ F F KE HT G++I + +LQS V FA Y VPHP + +R+Q DG DI
Sbjct: 28 PSSAIFTFNKEDHTLGNLIRSRLLQS-SHVLFAAYKVPHPLVPKFILRVQT-DG----DI 81
Query: 163 LKKGIKELESACDRI 177
K + + +AC+ +
Sbjct: 82 SPK--QAVITACNEL 94
>UNIPROTKB|F8WF84 [details] [associations]
symbol:POLR2J3 "DNA-directed RNA polymerase II subunit
RPB11-b2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR009025 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC105052 EMBL:AC093668 SUPFAM:SSF55257
HGNC:HGNC:33853 IPI:IPI00945319 ProteinModelPortal:F8WF84
SMR:F8WF84 Ensembl:ENST00000464525 ArrayExpress:F8WF84 Bgee:F8WF84
Uniprot:F8WF84
Length = 128
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 130 PEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETF 181
P+V FAGY VPHP + +I IR+Q Y + I +L S + E F
Sbjct: 23 PQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 639 639 0.00093 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 620 (66 KB)
Total size of DFA: 375 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.63u 0.09s 57.72t Elapsed: 00:00:26
Total cpu time: 57.63u 0.09s 57.72t Elapsed: 00:00:26
Start: Thu Aug 15 14:06:39 2013 End: Thu Aug 15 14:07:05 2013