RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12711
(639 letters)
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 114
Score = 89.8 bits (223), Expect = 3e-22
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
PN FEKE HT G++I L + +V FA Y V HP + +RIQ +GYD D L
Sbjct: 28 PNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDAL 87
Query: 164 KKGIKELESACDRITETFNDAMQCKVI 190
K + + + F + +
Sbjct: 88 KNACNSIINKLGALKTNFETEWNLQTL 114
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 99
Score = 74.1 bits (182), Expect = 6e-17
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 104 PNCRTFVFEKEGHTFGSVITHILQSYPEVDFAGYSVPHPADFQIFIRIQVKDGYDSIDIL 163
N T +T + + +VD A Y + HP I ++VK G +
Sbjct: 12 KNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSG-KPQSAI 70
Query: 164 KKGIKELESACDRITETFNDAMQ 186
K+ +++L + + F Q
Sbjct: 71 KRAVRKLSKLYEDLGTQFQKEFQ 93
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 55.5 bits (133), Expect = 1e-09
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 385 HYDALLLYDEADFDLA-KQFNTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVIV 443
+ A + Y D + L K G +C + +F+ G+ I +++ I
Sbjct: 12 QFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIF 71
Query: 444 LMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYF----SVGFLQYCVK---- 495
++S +F+ + H +A +S I+ +L + S L+ +
Sbjct: 72 VLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTY 131
Query: 496 LKLNHYASNMEQFWDRLYYSL 516
L+ S FW L ++
Sbjct: 132 LEWPKEKSKRGLFWANLRAAI 152
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 48.9 bits (116), Expect = 2e-07
Identities = 22/143 (15%), Positives = 52/143 (36%), Gaps = 11/143 (7%)
Query: 386 YDALLLYDEADFDLAKQF---NTQLNKMGFTVCDKDNSFLTGQFEHSAFIQVMDRCTCVI 442
YDA + Y E D + + F +C F+ G++ I +++ +
Sbjct: 6 YDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTV 65
Query: 443 VLMSTHFMNNSLLHSLTQYAEAKHIDHTIHSKIIPILCSDDYFSV--------GFLQYCV 494
++S +F+ + ++ + D + I+ +L + ++ +
Sbjct: 66 FVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKT 125
Query: 495 KLKLNHYASNMEQFWDRLYYSLK 517
L+ + E FW L ++K
Sbjct: 126 YLEWPMDEAQREGFWVNLRAAIK 148
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 102
Score = 31.8 bits (72), Expect = 0.058
Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 22/112 (19%)
Query: 243 IPIEAIRPKTRQVLNDKLCDIKQLMSPENYQRDYRGLADLMDIKAPPNPNCEDLMK---- 298
+ I + R +LC + + ++ LA + + +
Sbjct: 5 MAIRLLPLPVRA----QLC---AHLDALD---VWQQLATAVKLYPDQVEQISSQKQRGRS 54
Query: 299 ---KMFEDWTKSSTLDRSVFNIATFLHFLECIDRFDVYDDCIGFIEEDCLYY 347
+ W + + T + + + ++ ED Y
Sbjct: 55 ASNEFLNIWG-----GQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKY 101
>d1wmga_ a.77.1.2 (A:) Netrin receptor UNC5B {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 29.5 bits (66), Expect = 0.28
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 17/81 (20%)
Query: 259 KLCDIKQLMSPENYQRDYRGLADLMD-------IKAPPNPNCEDLMKKMFEDWTKSSTLD 311
K+C L +P + D+R LA + +P + + W
Sbjct: 12 KIC--SSLDAPNSRGNDWRLLAQKLSMDRYLNYFATKASP-----TGVILDLWEARQ--- 61
Query: 312 RSVFNIATFLHFLECIDRFDV 332
+ ++ + LE + + ++
Sbjct: 62 QDDGDLNSLASALEEMGKSEM 82
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.7 bits (66), Expect = 0.67
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 131 EVDFAGYSVPHPADFQIFIRIQVKDGYDSIDILKK 165
DF G +VP + ++++ DG D +++ ++
Sbjct: 144 RADFVGKNVPTSRSEVVKVKVEEVDGEDRVELWER 178
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 27.2 bits (60), Expect = 6.8
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 142 PADFQIFIRIQVKDGYDSIDILKKGIKELESACDRITETFNDAM 185
+ IFI + D D++D +K + + F D
Sbjct: 13 QGENVIFIVYNLTDSPDTVDKVKDVCANFSAMIRSMRNRFPDMQ 56
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 534 QFWDRLYYSLKGVGKGSQKQAIQFQTTPTSMPVAPPDYTLSQQAVAPPDYTL-PQQATNS 592
QFW + Y +L T + PP+ V P D + P + +
Sbjct: 520 QFWTQTYQALP-------------TVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAG 566
Query: 593 QSITNNM 599
S M
Sbjct: 567 DSEVAQM 573
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,384,570
Number of extensions: 113149
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 14
Length of query: 639
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 548
Effective length of database: 1,158,166
Effective search space: 634674968
Effective search space used: 634674968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)