BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12713
(551 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)
Query: 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 194
+VN++I A++ + +D T+ + D+A K+D N + YY RGQ+ + Y++A ++
Sbjct: 269 RVNSYIYMALI-MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 195 DKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254
DK L+P Q + ++ D E + K R F + E FA++
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK--RKFPEAP----EVPNFFAEI 381
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--------GNVDEAIKLIEKA 306
L D+ DFD A + ++ +I ++ + +YV A L+ +A N EA L+EKA
Sbjct: 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 307 ISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
+D A L +++Q+ ++EA+ F ++ LAR E + +AA Q ++
Sbjct: 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRI 501
Query: 367 CERYNIKKKV 376
+ KK+
Sbjct: 502 RSDPVLAKKI 511
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
+D T+ + D+A K+D N + YY RGQ+ + Y++A ++ DK L+P
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
F +A ++P +YY RGQ+Y + Y+ A + K +LNP Q +++
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
K + + +S F + E T FA++L D+ DFD A + ++ + R++
Sbjct: 356 K------QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 277 ENASLYVHRAMLMLQAR----------GNVDE-----AIKLIEKAISIDKSCMFAYETLG 321
++V L+ +A +DE AIKL+ KA +D A L
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
+++Q +++EA++ F + LAR E + +AA Q ++
Sbjct: 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 514
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
K + +F K F +A ++P +YY RGQ+Y + Y+ A + K +LNP
Sbjct: 289 KENSQEFFKFF---QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 21/225 (9%)
Query: 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216
F +A ++P +YY RGQ+Y + Y+ A + K +LNP Q +++
Sbjct: 292 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 351
Query: 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276
K + + +S F + E T FA++L D+ DFD A + ++ + R++
Sbjct: 352 K------QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 405
Query: 277 ENASLYVHRAMLMLQAR----------GNVDE-----AIKLIEKAISIDKSCMFAYETLG 321
++V L+ +A +DE AIKL+ KA +D A L
Sbjct: 406 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 465
Query: 322 TIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV 366
+++Q +++EA++ F + LAR E + +AA Q ++
Sbjct: 466 QLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 510
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
K + +F K F +A ++P +YY RGQ+Y + Y+ A + K +LNP
Sbjct: 285 KENSQEFFKFF---QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 337
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
+A + A ++A +DPN D+Y G + ++ A+ + ++L+PN
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN--- 235
Query: 207 ARAQRHFVVHKMI--VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA 264
H VVH + V ++ ++ ++ +R ++ + +A A L ++ A
Sbjct: 236 -----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 265 EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 324
E+ +N ++R+ P +A + A + + +GN++EA++L KA+ + A+ L ++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIK-REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 325 VQRGRLEEAVKCFNKAL 341
Q+G+L+EA+ + +A+
Sbjct: 350 QQQGKLQEALMHYKEAI 366
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 8/214 (3%)
Query: 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195
++ +I A L AA D A A + +P++ G + G+ EEA
Sbjct: 101 IDGYINLAAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 196 KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255
K I PNF VA + V + + + ++ F V N ++A VL
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNA------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 256 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF 315
+ FD A + R++ + P +A ++ + A + + +G +D AI +AI +
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPD 272
Query: 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
AY L ++G + EA C+N AL L A+
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 87/186 (46%), Gaps = 7/186 (3%)
Query: 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222
A K +P +A++Y G +Y GQ +EA+ + + L P+F + ++ G
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN---LAAALVAAG 115
Query: 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 282
D +E +++ + + + + ++ + +L + A+ + ++I P A +
Sbjct: 116 D---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342
+ + A+G + AI EKA+++D + + AY LG + + + AV + +AL
Sbjct: 173 SNLGC-VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 343 LARDEA 348
L+ + A
Sbjct: 232 LSPNHA 237
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319
DF+ AE + + R +P+N + + + + Q R +D + AI + AY
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARD 346
LG + +RG+L+EA++ + AL L D
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPD 99
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 19/200 (9%)
Query: 128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 187
++DP ++A+I V L A F +A A A + PN A + G + C++ Y
Sbjct: 196 VTLDPNF-LDAYINLGNV-LKEARIFDRAVAAYLRALSLSPNHAVVH---GNLACVY--Y 248
Query: 188 EEALRNLD-----KTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242
E+ L +L + I L P+F A + + + G E TH+
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCN---LANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
+ + A + +Q + + A + +++ V PE A+ + + A +LQ +G + EA+
Sbjct: 306 DSLNN---LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMH 361
Query: 303 IEKAISIDKSCMFAYETLGT 322
++AI I + AY +G
Sbjct: 362 YKEAIRISPTFADAYSNMGN 381
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
N EA Q D+D A EY+ +++ +DP NA + + + +G+ DEAI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+KA+ +D + A+ LG ++G +EA++ + KAL L + AE
Sbjct: 66 YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 42/164 (25%)
Query: 166 VDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
+DP N A+++Y G Y G Y+EA+ K + L+P
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------- 40
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 284
N EA Q D+D A EY+ +++ +DP NA + +
Sbjct: 41 ------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82
Query: 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
+ +G+ DEAI+ +KA+ +D + A + LG + ++G
Sbjct: 83 LGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG 497
DP + E GN + G D+ +A +A ++DPN A+++Y G Y G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQG------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 57
Query: 498 QYEEALRNLDKTIALNPN 515
Y+EA+ K + L+PN
Sbjct: 58 DYDEAIEYYQKALELDPN 75
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 40/128 (31%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
D+ +A +A ++DPN A+++Y G Y G Y+EA+ K + L+P
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------- 74
Query: 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271
N EA Q D+D A EY+ ++
Sbjct: 75 -------------------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 272 IRVDPENA 279
+ +DP NA
Sbjct: 104 LELDPNNA 111
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 505
+E + NL N + D+ +A +A ++DPN A+++Y G Y G Y+EA+
Sbjct: 43 AEAWYNLGNAY---YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 506 LDKTIALNPN 515
K + L+PN
Sbjct: 100 YQKALELDPN 109
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+DP N++ + +G+ DEAI+ +KA+ +D + A+ LG ++G +EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 334 VKCFNKALPLARDEAE 349
++ + KAL L + AE
Sbjct: 63 IEYYQKALELDPNNAE 78
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
Q D+D A EY+ +++ +DP +A + + + +G+ DEAI+ +KA+ +D A+
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAW 72
Query: 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM---KVCERYNIKK 374
LG ++G +EA++ + KAL L AE Y+L +A Q + E Y
Sbjct: 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKAL 130
Query: 375 KVSPRS 380
++ PRS
Sbjct: 131 ELDPRS 136
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+++++ ++ ++ EA Q D+D A EY+ +++ +DP +A + +
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
+ +G+ DEAI+ +KA+ +D A+ LG ++G +EA++ + KAL L
Sbjct: 78 AYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
D+ +A +A ++DP A+++Y G Y G Y+EA+ K + L+P A
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS 271
+K GD +++++ ++ ++ EA Q D+D A EY+ ++
Sbjct: 76 GNAYYKQ---GD---YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
Query: 272 IRVDPEN 278
+ +DP +
Sbjct: 130 LELDPRS 136
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 437 GDPTKTIEESEKYGNLENESGQK--------HAASDFTKAFADLDEAEKVDPNVADSYYQ 488
GD + IE +K L+ S + + D+ +A +A ++DP A+++Y
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Query: 489 RGQIYCLFGQYEEALRNLDKTIALNP 514
G Y G Y+EA+ K + L+P
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 437 GDPTKTIEESEKYGNLENESGQK--------HAASDFTKAFADLDEAEKVDPNVADSYYQ 488
GD + IE +K L+ S + + D+ +A +A ++DP A+++Y
Sbjct: 49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108
Query: 489 RGQIYCLFGQYEEALRNLDKTIALNP 514
G Y G Y+EA+ K + L+P
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 505
+E + NL N + D+ +A +A ++DP A+++Y G Y G Y+EA+
Sbjct: 1 AEAWYNLGNAY---YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 57
Query: 506 LDKTIALNP 514
K + L+P
Sbjct: 58 YQKALELDP 66
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
N EA Q D+D A EY+ +++ + P NA + + + +G+ DEAI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+KA+ + + A+ LG ++G +EA++ + KAL L + AE
Sbjct: 66 YQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 166 VDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
+DP N A+++Y G Y G Y+EA+ K + L PN A +K GD
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQ---GD- 58
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
+++++ ++ ++ + N EA Q D+D A EY+ +++ + P NA
Sbjct: 59 --YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+++++ ++ ++ + N EA Q D+D A EY+ +++ + P NA + +
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN 85
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
+ +G+ DEAI+ +KA+ + + A + LG + ++G
Sbjct: 86 AYYK-QGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG 497
DP + E GN + G D+ +A +A ++ PN A+++Y G Y G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQG------DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQG 57
Query: 498 QYEEALRNLDKTIALNPN 515
Y+EA+ K + L PN
Sbjct: 58 DYDEAIEYYQKALELYPN 75
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+DP N++ + +G+ DEAI+ +KA+ + + A+ LG ++G +EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 334 VKCFNKALPLARDEAE 349
++ + KAL L + AE
Sbjct: 63 IEYYQKALELYPNNAE 78
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 505
+E + NL N + D+ +A +A ++ PN A+++Y G Y G Y+EA+
Sbjct: 43 AEAWYNLGNAY---YKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 506 LDKTIALNPN 515
K + L PN
Sbjct: 100 YQKALELYPN 109
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ +A +A ++ PN A+++Y G Y G Y+EA+ K + L PN
Sbjct: 24 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ +A +A ++ PN A+++Y G Y G Y+EA+ K + L PN
Sbjct: 58 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Query: 116 KAIEDLTQLVEDTSVDPKIKVN-AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174
KA E T+ +E+ D +N A++ L + ++ +A A D+A ++D + A +Y
Sbjct: 41 KAAEAFTKAIEENKEDAIPYINFANL------LSSVNELERALAFYDKALELDSSAATAY 94
Query: 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEF 234
Y G +Y + Y+EA +K + + +++ ++V ++ ++ +L
Sbjct: 95 YGAGNVYVVKEMYKEAKDMFEKALRAG----MENGDLFYMLGTVLVKLEQPKL--ALPYL 148
Query: 235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG 294
+ V+ + N EA F L ++ D A F DP +A + + A + +
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF-YNAGVTYAYKE 207
Query: 295 NVDEAIKLIEKAISIDKSCMFA 316
N ++A+++++KAI I M A
Sbjct: 208 NREKALEMLDKAIDIQPDHMLA 229
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319
D++ A E F ++I + E+A Y++ A L L + ++ A+ +KA+ +D S AY
Sbjct: 38 DYEKAAEAFTKAIEENKEDAIPYINFANL-LSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY 370
G + V + +EA F KAL + +L ++ + Q K+ Y
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY 147
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 421 QKMTSILNSNDYEIIPGDPTKTIEESEK----YGNLENESGQKHAASDFTKAFADLDEAE 476
Q+M DYE TK IEE+++ Y N N + ++ +A A D+A
Sbjct: 28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFAN---LLSSVNELERALAFYDKAL 84
Query: 477 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510
++D + A +YY G +Y + Y+EA +K +
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 479 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519
DP AD++Y G Y E+AL LDK I + P+ +A
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
N EA Q D+ A EY+ +++ +DP NAS + + + +G+ +AI+
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYK-QGDYQKAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349
+KA+ +D + A+ G ++G ++A++ + KAL L + A+
Sbjct: 66 YQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 437 GDPTKTIEESEKYGNLE--------NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQ 488
GD K IE +K L+ N + D+ KA +A ++DPN A ++Y+
Sbjct: 23 GDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYR 82
Query: 489 RGQIYCLFGQYEEALRNLDKTIALNPN 515
RG Y G Y++A+ + K + L+PN
Sbjct: 83 RGNAYYKQGDYQKAIEDYQKALELDPN 109
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ KA +A ++DPN A ++Y+RG Y G Y++A+ + K + L+PN
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG 497
DP + E + GN + G D+ KA +A ++DPN A ++Y G Y G
Sbjct: 4 DPGNSAEAWKNLGNAYYKQG------DYQKAIEYYQKALELDPNNASAWYNLGNAYYKQG 57
Query: 498 QYEEALRNLDKTIALNPN 515
Y++A+ K + L+PN
Sbjct: 58 DYQKAIEYYQKALELDPN 75
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+++++ ++ ++ N A Q D+ A EY+ +++ +DP NA + R
Sbjct: 26 QKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85
Query: 288 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328
+ +G+ +AI+ +KA+ +D + A + LG + ++G
Sbjct: 86 AYYK-QGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ KA +A ++DPN A ++Y G Y G Y++A+ K + L+PN
Sbjct: 24 DYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 318
E+F+ A ++ ++I ++P NA + +RA + GN A++ E+AI ID + AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 319 TLGTIEVQRGRLEEAVKCFNKALPLARD 346
+G + EAV + KAL L D
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPD 112
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 16/212 (7%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
L AA A + A DP+ +YY+R ++ G+ + AL +L K IAL +F
Sbjct: 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTA 72
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKEF-------RNFVDTHSNVVEA---CTLFAQVL- 255
AR QR H ++ G + E K+ + + S +V+A L +Q L
Sbjct: 73 ARLQRG---HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQALD 129
Query: 256 -VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314
D D+ A + ++ + V +A L RA ++ G +AI ++ A +
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK-EGEPRKAISDLKAASKLKSDNT 188
Query: 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346
A+ + T+ Q G E ++ + L L +D
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
AA A + A DP+ +YY+R ++ G+ + AL +L K IAL +F AR
Sbjct: 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAAR 74
Query: 521 AQR 523
QR
Sbjct: 75 LQR 77
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 243 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
N EA Q D+D A EY+ +++ +DP NA + + + +G+ DEAI+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEY 65
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRG 328
+KA+ +D + A + LG + ++G
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG 497
DP + E GN + G D+ +A +A ++DPN A+++Y G Y G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQG------DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 57
Query: 498 QYEEALRNLDKTIALNPN 515
Y+EA+ K + L+PN
Sbjct: 58 DYDEAIEYYQKALELDPN 75
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333
+DP N++ + +G+ DEAI+ +KA+ +D + A+ LG ++G +EA
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 334 VKCFNKALPLARDEAE 349
++ + KAL L + AE
Sbjct: 63 IEYYQKALELDPNNAE 78
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203
D+ +A +A ++DPN A+++Y G Y G Y+EA+ K + L+PN
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 41/115 (35%)
Query: 166 VDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224
+DP N A+++Y G Y G Y+EA+ K + L+P
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------------- 40
Query: 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA 279
N EA Q D+D A EY+ +++ +DP NA
Sbjct: 41 ------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244
G ++ A+R K + +PN + + +P D +++ + FV +
Sbjct: 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPND------AIESLKKFVVLDTTS 72
Query: 245 VEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302
EA + A ++D++ A + R+I ++ A Y ++ L+ + G D+AI+
Sbjct: 73 AEAYYILGSANFMIDEKQ--AAIDALQRAIALNTVYADAY-YKLGLVYDSMGEHDKAIEA 129
Query: 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337
EK ISI + AY+++G +G +EAVK F
Sbjct: 130 YEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 437 GDPTKTIEESEKYGNLENESGQKH---AASDFT-----KAFADLDEAEKVDPNVADSYYQ 488
G P IE +K+ L+ S + + +++F A L A ++ AD+YY+
Sbjct: 53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK 112
Query: 489 RGQIYCLFGQYEEALRNLDKTIALNPNF 516
G +Y G++++A+ +KTI++ P F
Sbjct: 113 LGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204
AD+YY+ G +Y G++++A+ +KTI++ P F
Sbjct: 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS----- 312
++DFD A ++++++ +DP N + V++A + + +G+ ++ +L EKAI + +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDY 75
Query: 313 --CMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
+AY +G + + ++A+ +NK+L R
Sbjct: 76 RMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227
P ADS I G EEA+R K + + P F A + V+ + + ++
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ------QGKL 59
Query: 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287
+++L ++ + +A + L + +D GA + + R+I+++P A + + A
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 288 LMLQARGNVDEAIKLIEKAISI-----DKSCMFAY 317
+ + GN+ EAI A+ + D C A+
Sbjct: 120 IH-KDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
A + +Q + + A + +++ V PE A+ + + A + LQ +G + EA+ ++AI I
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV-LQQQGKLQEALMHYKEAIRIS 73
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
+ AY +G + ++ A++C+ +A+
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
Query: 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197
AH A V L +A EA ++ P AD+Y G + AL+ +
Sbjct: 45 AHSNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 103
Query: 198 IALNPNFHVARAQRHFV-VHKMIVPGDRERVEQSLKEFR-------NFVDTHSNVVEACT 249
I +NP F A A + +HK D + +++ +R +F D + N+
Sbjct: 104 IQINPAF--ADAHSNLASIHK-----DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL- 155
Query: 250 LFAQVLVDQEDFD 262
Q++ D D+D
Sbjct: 156 ---QIVCDWTDYD 165
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
L AA A + A DP+ +YY+R ++ G+ + AL +L K I L +F
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLKE 233
AR QR H ++ G + E K+
Sbjct: 96 ARLQRG---HLLLKQGKLDEAEDDFKK 119
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
AA A + A DP+ +YY+R ++ G+ + AL +L K I L +F AR
Sbjct: 38 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR 97
Query: 521 AQR 523
QR
Sbjct: 98 LQR 100
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
F+ ++ DP+N Y RA + L A G A+ + K I + A G + +++
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107
Query: 328 GRLEEAVKCFNKAL 341
G+L+EA F K L
Sbjct: 108 GKLDEAEDDFKKVL 121
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 22/128 (17%)
Query: 401 IIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKH 460
++ PA + GKT+V Y Y ++ SE Y L ++ +
Sbjct: 54 LVNPALENGKTLVARTPRYL---------GGYMVL----------SEAYVALYRQAEDRE 94
Query: 461 AASDFT-KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFH 517
+ +A + L +AE+V+P A + QRG +Y L G+ ++A +L + +AL P
Sbjct: 95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR 154
Query: 518 VARAQRHF 525
A A+ +
Sbjct: 155 SALAELYL 162
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFHVARAQ 210
+A + L +AE+V+P A + QRG +Y L G+ ++A +L + +AL P A A+
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159
Query: 211 RHFVVHKM 218
+ + ++
Sbjct: 160 LYLSMGRL 167
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 179 QIYCLFGQYEEALRNLDKTIALNPN-----FHVARAQRHFVVHKMIVPGDRERVEQSLKE 233
Q+Y L G+Y+ AL ++ + NP + +AR Q + + + V ++ +
Sbjct: 14 QLYAL-GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72
Query: 234 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI-------RVDPENASLYVHRA 286
++ V L+ Q ED + + Y +++ RV+P A L++ R
Sbjct: 73 LGGYMVLSEAYV---ALYRQA----EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRG 125
Query: 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341
L+ G D+A +++A++++ + L + + GRL+EA+ + KAL
Sbjct: 126 -LVYALLGERDKAEASLKQALALEDTPEIR-SALAELYLSMGRLDEALAQYAKAL 178
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206
L AA A + A DP+ +YY+R ++ G+ + AL +L K I L +F
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTA 95
Query: 207 ARAQRHFVVHKMIVPGDRERVEQSLK 232
AR QR H ++ G + E K
Sbjct: 96 ARLQRG---HLLLKQGKLDEAEDDFK 118
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 461 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520
AA A + A DP+ +YY+R ++ G+ + AL +L K I L +F AR
Sbjct: 38 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAAR 97
Query: 521 AQR 523
QR
Sbjct: 98 LQR 100
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327
F+ ++ DP+N Y RA + L A G A+ + K I + A G + +++
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFL-AXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQ 107
Query: 328 GRLEEAVKCFNKAL 341
G+L+EA F K L
Sbjct: 108 GKLDEAEDDFKKVL 121
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 317
Q+DF+ A +++++I +DP N + Y ++A + + + E ++ EKA+ + + Y
Sbjct: 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK-KFAECVQFCEKAVEVGRETRADY 79
Query: 318 ETLGTIEVQRGR-------LEEAVKCFNKALPLARD 346
+ + + G L AV+ F+++L RD
Sbjct: 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 104 RATVYIFTSQSTKAIEDLTQLV-----------EDTSVDPKIKVNAHIKRAVVHLHAASD 152
R TVY + +A+ ++V E+ +++ +H+ A+ HL +
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA- 211
Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
F+ A ++A ++D N ++RG+ + +E A + K + L PN A+ Q
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
F+ A ++A ++D N ++RG+ + +E A + K + L PN A+ Q
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 193
I+++ ++ A + + D+ KA + K+D N + Y+ G FG EEA N
Sbjct: 86 IEISCNLNLATCY-NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144
Query: 194 LDKTIALNPNFHVARAQRHFVVHKM 218
L K +LNPN R V+K+
Sbjct: 145 LYKAASLNPNNLDIRNSYELCVNKL 169
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515
D+ KA + K+D N + Y+ G FG EEA NL K +LNPN
Sbjct: 103 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID------- 310
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDY 75
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
+ AY +G + + ++A+ +NK+L R
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID------- 310
++DFD A ++++++ +DP N + ++A + + +G+ ++ +L EKAI +
Sbjct: 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDY 75
Query: 311 KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345
+ AY +G + + ++A+ +NK+L R
Sbjct: 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211
++TKA D+A +D Y+RG+ L ++E A + +K + +NP AR Q
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 212 HFVVHKMIVPGDRER 226
K +R+R
Sbjct: 392 SMCQKKAKEHNERDR 406
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
++TKA D+A +D Y+RG+ L ++E A + +K + +NP AR Q
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
++TKA D+A +D Y+RG+ L ++E A + +K + +NP AR Q
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522
++TKA D+A +D Y+RG+ L ++E A + +K + +NP AR Q
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343
+G+ DEAI+ +KA+ +D A+ LG ++G +EA++ + KAL L
Sbjct: 16 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310
Q D+D A EY+ +++ +DP +A + + + +G+ DEAI+ +KA+ +D
Sbjct: 16 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELD 67
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 505
+E + NL N + D+ +A +A ++DP A+++Y G Y G Y+EA+
Sbjct: 3 AEAWYNLGNAY---YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 59
Query: 506 LDKTIALNP 514
K + L+P
Sbjct: 60 YQKALELDP 68
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202
D+ +A +A ++DP A+++Y G Y G Y+EA+ K + L+P
Sbjct: 18 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319
+F+ A + FN ++ V PE+ SL+ +R L +EA++ +A+ I + +
Sbjct: 228 EFNRAIDAFNAALTVRPEDYSLW-NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 320 LGTIEVQRGRLEEAVKCFNKALPLAR 345
LG + G EAV F AL L R
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQR 312
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 104 RATVYIFTSQSTKAIEDLTQLV-----------EDTSVDPKIKVNAHIKRAVVHLHAASD 152
R TVY + +A+ ++V E+ +++ +H+ A+ HL +
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA- 211
Query: 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
F+ A ++A ++D N +RG+ + +E A + K + L PN A+ Q
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 277 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336
+N Y +L A GN E+I L EKAI +D + G R EEAV C
Sbjct: 4 QNPEEYYLEGVLQYDA-GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 337 FNKALPLARDE 347
+N + + DE
Sbjct: 63 YNYVINVIEDE 73
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 438 DPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD-SYYQRGQIYCLF 496
D KTI+E G++EN A L+E + +P D +YY G Y
Sbjct: 2 DQLKTIKELINQGDIEN-------------ALQALEEFLQTEPVGKDEAYYLMGNAYRKL 48
Query: 497 GQYEEALRNLDKTIALNPNFHVARAQRHFV 526
G +++AL N I LNP+ +A++ +
Sbjct: 49 GDWQKALNNYQSAIELNPDSPALQARKMVM 78
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIAL 200
+ + L D A L+E + +P D +YY G Y G +++AL N I L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 201 NPNFHVARAQRHFV 214
NP+ +A++ +
Sbjct: 65 NPDSPALQARKMVM 78
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL--RATVYIFTSQSTKAIEDLTQ 123
+K F+ DY A++H TE I+ + A+L RA Y + A++D +
Sbjct: 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 124 LVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY--YQRGQIY 181
++ ++P + + ++A L A D+TKA +A +D + ++ YQR
Sbjct: 76 CIQ---LEPTF-IKGYTRKAAA-LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR---- 126
Query: 182 CLFGQY 187
C+ QY
Sbjct: 127 CMMAQY 132
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210
SD+ A EA ++DP+ + Y+R Q + +Y++AL +L K + P +A+
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 211 RHFVVHKMIVPGDRER 226
V K+ D+E+
Sbjct: 347 LLKVKQKIKAQKDKEK 362
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514
SD+ A EA ++DP+ + Y+R Q + +Y++AL +L K + P
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 265 EEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
+E F ++R+DP + V + ++ G D+A+ A+S+ + + LG
Sbjct: 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260
Query: 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV----------CERYNIK 373
+ EEAV + +AL E + +I S + I+ + + E N++
Sbjct: 261 LANGNQSEEAVAAYRRAL-----ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315
Query: 374 KKV-SPR------SQNITKNEKLAIKQLRENN 398
+K PR S+NI +LA+ L +++
Sbjct: 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 23/152 (15%)
Query: 265 EEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323
+E F ++R+DP + V + ++ G D+A+ A+S+ + + LG
Sbjct: 161 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 220
Query: 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV----------CERYNIK 373
+ EEAV + +AL E + +I S + I+ + + E N++
Sbjct: 221 LANGNQSEEAVAAYRRAL-----ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275
Query: 374 KKV-SPR------SQNITKNEKLAIKQLRENN 398
+K PR S+NI +LA+ L +++
Sbjct: 276 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 307
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSC 313
L+ F +E F ++R+DP + V + ++ G D+A+ A+S+ +
Sbjct: 151 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 210
Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV------- 366
+ LG + EEAV + +AL E + +I S + I+ + +
Sbjct: 211 YLLWNKLGATLANGNQSEEAVAAYRRAL-----ELQPGYIRSRYNLGISCINLGAHREAV 265
Query: 367 ---CERYNIKKKV-SPR------SQNITKNEKLAIKQLRENN 398
E N+++K PR S+NI +LA+ L +++
Sbjct: 266 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 307
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSC 313
L+ F +E F ++R+DP + V + ++ G D+A+ A+S+ +
Sbjct: 128 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 187
Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV------- 366
+ LG + EEAV + +AL E + +I S + I+ + +
Sbjct: 188 YLLWNKLGATLANGNQSEEAVAAYRRAL-----ELQPGYIRSRYNLGISCINLGAHREAV 242
Query: 367 ---CERYNIKKKV-SPR------SQNITKNEKLAIKQLRENN 398
E N+++K PR S+NI +LA+ L +++
Sbjct: 243 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 284
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 23/162 (14%)
Query: 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISIDKSC 313
L+ F +E F ++R+DP + V + ++ G D+A+ A+S+ +
Sbjct: 142 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 201
Query: 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKV------- 366
+ LG + EEAV + +AL E + +I S + I+ + +
Sbjct: 202 YLLWNKLGATLANGNQSEEAVAAYRRAL-----ELQPGYIRSRYNLGISCINLGAHREAV 256
Query: 367 ---CERYNIKKKV-SPR------SQNITKNEKLAIKQLRENN 398
E N+++K PR S+NI +LA+ L +++
Sbjct: 257 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 298
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 324 EVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364
E RG L +++C+ K P +E L HIYS+ + A+ ++
Sbjct: 721 EKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKEL 761
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
Query: 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261
P + RA+ + ++ E L+ ++ + + E L + + Q D+
Sbjct: 1 PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60
Query: 262 DGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNVDEAIK-LIEKAISIDKSCMFAYET 319
+ + +++++ ENA LY A +L QA ++ + +I+KA+++D + + A
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120
Query: 320 LGTIEVQRGRLEEAVKCFNKALPL 343
L + + +A++ + K + L
Sbjct: 121 LASDAFMQANYAQAIELWQKVMDL 144
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 279 ASLYVHRAMLMLQARG-NVD-----EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE 332
S V LML+ + NV EA L+ KA+ ++ + A+ LG + ++G +
Sbjct: 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 333 AVKCFNKALPLARDEAELSHI 353
A CF+ AL +++ L ++
Sbjct: 156 AHTCFSGALTHCKNKVSLQNL 176
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 260 DFDGAEEYFNRSIRVDPENASLYVHRA------MLMLQARGNVDEAIKLIEKAI 307
D+ A ++N +++ DPENA LY +RA M +A + D I+L K I
Sbjct: 28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 166 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225
++P +A +G Y G Y A+R+ ++ + +P + + R + K++
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM------ 61
Query: 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278
+++L + + S ++ A LV ++ A+ + +++VDP N
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLV 125
+K F+ DY TA+RH E ++ N A+ RA + +A++D +
Sbjct: 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCI 74
Query: 126 EDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN 169
+D K + +I++A L A +++KA ++A +VDP+
Sbjct: 75 R---LDSKF-IKGYIRKAAC-LVAMREWSKAQRAYEDALQVDPS 113
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
N A+ L E+ + D + Y LG + + R ++A+ + + + +AR+E +
Sbjct: 21 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 80
Query: 355 SLRDAAI 361
L+DA +
Sbjct: 81 ELQDAKL 87
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354
N A+ L E+ + D + Y LG + + R ++A+ + + + +AR+E +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 355 SLRDAAI 361
L+DA +
Sbjct: 82 ELQDAKL 88
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 132 PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191
P+ + H RA HL D+ KA + +A + D + Y+R Q G+ ++A+
Sbjct: 61 PQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
Query: 192 RNLDKTIALNP 202
+L + ++L P
Sbjct: 120 LDLQRCVSLEP 130
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 318
+D++ A ++++++I ++P NA Y +R++ L+ A+ +AI +DK + Y
Sbjct: 35 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALNDATRAIELDKKYIKGYY 93
Query: 319 TLGTIEVQRGRLEEAVK 335
+ G+ A++
Sbjct: 94 RRAASNMALGKFRAALR 110
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 322 TIEVQRGRLE--EAVKCFNKALPLARDEAELSHIYSLRDAAIAQM 364
T + +RG+ E A++C+ K P +E L H+YS+ + A+ ++
Sbjct: 686 TYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEEL 730
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ------ARGNVDEAIKLIEKAI 307
+D++ A ++++++I ++P NA Y +R++ L+ A G+ AI+L +K I
Sbjct: 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74
>pdb|1RH1|A Chain A, Crystal Structure Of The Cytotoxic Bacterial Protein
Colicin B At 2.5 A Resolution
Length = 511
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA---ASDF 153
KAL+R + + F ++ ++ +D + +P +K+NA K A+V+ A D
Sbjct: 345 KALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEAIVNAWKAFNAEDM 404
Query: 154 TKAFADLDEAEK 165
FA L + K
Sbjct: 405 GNKFAALGKTFK 416
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE 318
+D++ A ++++++I ++P NA Y +R++ L+ A+ +AI +DK + Y
Sbjct: 27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELDKKYIKGYY 85
Query: 319 TLGTIEVQRGRLEEAVKCF 337
+ G+ A++ +
Sbjct: 86 RRAASNMALGKFRAALRDY 104
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREL 760
>pdb|3B40|A Chain A, Crystal Structure Of The Probable Dipeptidase Pvdm From
Pseudomonas Aeruginosa
Length = 417
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 350 LSHIYSLRDAAIAQMKVCER--YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK 407
L + +L A I R +IK+ +S + K+ I+ + +RP K
Sbjct: 219 LEQVAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKDSGGVIQVV--GFPAYLRPLSK 276
Query: 408 GGKTVVMDKADYTQKMTSI--LNSNDYEIIPGDPTKTIEESEKYG 450
+DK D + + L DY ++PGDP TI +++G
Sbjct: 277 ----PTLDKLDALRARFDLPPLEGLDYALMPGDPIITIWPEQRFG 317
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREL 760
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREL 760
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAREL 760
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 71 AFEHEDYLTAIRHCTE---EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126
A + ED +TAIRH E E S S + K L L+ T I ++ A+E+L LV+
Sbjct: 261 ALKTEDIITAIRHLRERGLEFLSVPSTYYKQLREKLK-TAKIKVKENIDALEELKILVD 318
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREL 760
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAREL 760
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAREL 760
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEA 299
DPE + + ++EA
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEA 757
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA-QVLVDQEDFDGAEEYFNRSIRV 274
++ G E + + K F N + +++ V+ L A V D ED A + + + +
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRI-IYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNI 732
Query: 275 DPENASLYVHRAMLMLQARGNVDEAIKL 302
DPE + + ++EA +L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREL 760
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275
++ G E + + K F N + V L V D ED A + + + +D
Sbjct: 674 DQLRCNGVLEAIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNID 733
Query: 276 PENASLYVHRAMLMLQARGNVDEAIKL 302
PE + + ++EA +L
Sbjct: 734 PEQFRFGITKIFFRAGQLARIEEAREL 760
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 167 DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI-ALNPNF----------HVARAQRHFVV 215
DPN+A + + QY+E L +L T+ NP+F A+ + V+
Sbjct: 614 DPNIASRAKKGANFLTVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVL 673
Query: 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275
++ G E + + K F N + V L V D ED A + + + +D
Sbjct: 674 DQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYDLAPNVPRDAEDSQKATDAVLKHLNID 733
Query: 276 PENASLYVHRAMLMLQARGNVDEAIKL 302
PE + + ++EA +L
Sbjct: 734 PEQFRFGITKIFFRAGQLARIEEAREL 760
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,644,407
Number of Sequences: 62578
Number of extensions: 644590
Number of successful extensions: 2257
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 292
length of query: 551
length of database: 14,973,337
effective HSP length: 104
effective length of query: 447
effective length of database: 8,465,225
effective search space: 3783955575
effective search space used: 3783955575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)