Query psy12713
Match_columns 551
No_of_seqs 1026 out of 3238
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 17:48:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 3.3E-46 7.1E-51 338.4 29.3 387 60-529 115-502 (966)
2 KOG4626|consensus 100.0 4.7E-45 1E-49 330.9 30.4 399 62-540 49-479 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 6E-36 1.3E-40 301.9 42.7 382 61-519 127-578 (615)
4 KOG0547|consensus 100.0 2.6E-34 5.7E-39 254.4 34.6 350 2-374 228-597 (606)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 6.4E-34 1.4E-38 305.8 45.2 429 61-540 465-894 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-33 8.5E-38 299.7 45.2 456 59-538 361-858 (899)
7 PRK11447 cellulose synthase su 100.0 2.5E-33 5.5E-38 300.7 43.1 398 66-539 274-733 (1157)
8 PRK15174 Vi polysaccharide exp 100.0 5.6E-33 1.2E-37 278.8 40.8 346 60-522 41-391 (656)
9 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-32 2.5E-37 278.0 40.2 368 97-539 126-564 (615)
10 PRK11447 cellulose synthase su 100.0 5.3E-32 1.1E-36 290.6 46.3 426 73-539 159-693 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 8.6E-31 1.9E-35 263.1 39.2 330 97-540 41-375 (656)
12 KOG2002|consensus 100.0 6.5E-31 1.4E-35 251.6 33.1 458 57-547 160-710 (1018)
13 KOG0547|consensus 100.0 6.4E-31 1.4E-35 233.0 28.8 348 60-516 114-570 (606)
14 PRK10049 pgaA outer membrane p 100.0 7.7E-28 1.7E-32 247.2 43.0 403 66-538 20-448 (765)
15 KOG2002|consensus 100.0 2.7E-28 5.8E-33 233.9 35.6 441 63-536 130-583 (1018)
16 PRK10049 pgaA outer membrane p 100.0 7.8E-28 1.7E-32 247.2 40.1 384 60-522 48-466 (765)
17 KOG1126|consensus 100.0 1.8E-28 3.9E-33 226.6 27.8 261 66-341 324-584 (638)
18 PRK09782 bacteriophage N4 rece 100.0 3.5E-26 7.5E-31 234.7 41.2 350 73-538 354-732 (987)
19 KOG1155|consensus 100.0 5.6E-26 1.2E-30 200.6 36.4 360 58-538 161-528 (559)
20 PRK09782 bacteriophage N4 rece 100.0 3E-26 6.5E-31 235.1 40.2 361 59-535 374-762 (987)
21 KOG1126|consensus 100.0 7.9E-28 1.7E-32 222.4 25.3 294 138-540 319-614 (638)
22 KOG0624|consensus 100.0 9.7E-26 2.1E-30 191.5 31.6 329 97-528 37-386 (504)
23 PRK11788 tetratricopeptide rep 100.0 1.1E-25 2.3E-30 216.7 34.9 283 60-354 34-322 (389)
24 PRK11788 tetratricopeptide rep 100.0 1E-24 2.2E-29 209.9 36.0 306 97-516 34-355 (389)
25 KOG1173|consensus 100.0 6.3E-25 1.4E-29 199.0 31.4 397 60-529 48-535 (611)
26 KOG0548|consensus 99.9 2.8E-24 6E-29 194.1 32.2 112 62-181 3-114 (539)
27 KOG2076|consensus 99.9 1.6E-23 3.4E-28 200.1 36.5 368 58-535 136-544 (895)
28 KOG1155|consensus 99.9 2.4E-23 5.2E-28 184.1 35.0 341 73-527 203-551 (559)
29 PRK14574 hmsH outer membrane p 99.9 1.1E-22 2.4E-27 204.8 42.3 406 60-536 33-503 (822)
30 KOG0548|consensus 99.9 3.2E-23 7E-28 187.3 32.1 355 101-537 5-446 (539)
31 KOG0624|consensus 99.9 3.3E-23 7.1E-28 176.3 27.2 309 136-541 38-365 (504)
32 KOG2003|consensus 99.9 2E-23 4.4E-28 184.2 25.7 389 65-531 241-708 (840)
33 KOG0495|consensus 99.9 2.3E-21 4.9E-26 178.7 37.6 382 58-526 513-894 (913)
34 KOG1173|consensus 99.9 1.6E-22 3.4E-27 183.6 29.0 284 57-355 240-530 (611)
35 KOG0495|consensus 99.9 3.3E-21 7.1E-26 177.6 34.6 388 60-532 478-866 (913)
36 KOG2076|consensus 99.9 2E-21 4.3E-26 186.0 34.2 329 98-538 139-504 (895)
37 KOG2003|consensus 99.9 1.3E-22 2.7E-27 179.2 22.6 410 56-538 196-681 (840)
38 PF13429 TPR_15: Tetratricopep 99.9 7.7E-24 1.7E-28 192.7 14.2 264 63-343 10-277 (280)
39 PRK14574 hmsH outer membrane p 99.9 2.1E-20 4.5E-25 188.5 39.4 381 66-520 73-521 (822)
40 TIGR00540 hemY_coli hemY prote 99.9 3E-20 6.5E-25 177.6 36.7 280 60-349 83-372 (409)
41 KOG1174|consensus 99.9 9.2E-20 2E-24 159.3 34.8 391 59-529 95-517 (564)
42 PF13429 TPR_15: Tetratricopep 99.9 1.1E-23 2.3E-28 191.7 10.9 260 141-511 13-276 (280)
43 PRK12370 invasion protein regu 99.9 7E-21 1.5E-25 188.8 31.7 265 62-344 259-536 (553)
44 KOG4162|consensus 99.9 8.2E-20 1.8E-24 172.1 35.6 473 51-537 274-774 (799)
45 KOG1156|consensus 99.9 4.7E-19 1E-23 163.8 38.7 416 60-517 6-439 (700)
46 KOG0550|consensus 99.9 7E-21 1.5E-25 166.3 24.2 278 59-352 47-358 (486)
47 KOG4162|consensus 99.9 8.9E-20 1.9E-24 171.8 33.3 344 60-518 322-789 (799)
48 KOG1129|consensus 99.9 7.7E-21 1.7E-25 160.9 22.1 268 70-350 188-465 (478)
49 PRK10747 putative protoheme IX 99.9 3.6E-19 7.8E-24 169.2 35.9 279 60-349 83-363 (398)
50 PRK11189 lipoprotein NlpI; Pro 99.9 4.1E-20 8.8E-25 168.1 28.0 222 113-346 41-268 (296)
51 PRK12370 invasion protein regu 99.9 4.4E-20 9.5E-25 183.2 30.6 190 152-348 276-475 (553)
52 TIGR00540 hemY_coli hemY prote 99.9 4.6E-19 9.9E-24 169.5 35.5 199 142-348 90-297 (409)
53 KOG1125|consensus 99.9 8E-21 1.7E-25 173.5 21.5 262 57-333 281-561 (579)
54 KOG1129|consensus 99.9 2E-21 4.4E-26 164.4 15.8 244 65-324 227-473 (478)
55 KOG1174|consensus 99.9 1.3E-19 2.8E-24 158.4 27.1 270 65-348 200-472 (564)
56 PRK11189 lipoprotein NlpI; Pro 99.9 2E-19 4.3E-24 163.5 28.1 240 74-329 39-286 (296)
57 COG2956 Predicted N-acetylgluc 99.9 2.3E-18 5E-23 146.0 30.5 286 61-354 35-322 (389)
58 COG3063 PilF Tfp pilus assembl 99.9 3.6E-19 7.7E-24 144.1 23.9 211 133-351 32-244 (250)
59 PRK10747 putative protoheme IX 99.9 3.5E-18 7.5E-23 162.5 33.7 281 142-536 90-380 (398)
60 KOG0550|consensus 99.9 5.4E-20 1.2E-24 160.8 19.2 290 98-515 49-353 (486)
61 PLN03081 pentatricopeptide (PP 99.9 3.4E-18 7.3E-23 175.8 35.6 388 60-538 122-549 (697)
62 TIGR02521 type_IV_pilW type IV 99.9 8.2E-19 1.8E-23 156.5 27.1 201 136-344 31-233 (234)
63 KOG1125|consensus 99.9 6E-20 1.3E-24 167.8 19.5 239 102-346 289-530 (579)
64 COG3063 PilF Tfp pilus assembl 99.9 8.1E-19 1.8E-23 142.0 23.7 209 59-281 33-243 (250)
65 KOG1127|consensus 99.8 4E-18 8.8E-23 164.6 28.2 407 112-538 472-905 (1238)
66 TIGR02521 type_IV_pilW type IV 99.8 4E-18 8.7E-23 152.0 26.2 201 59-273 29-231 (234)
67 PLN03218 maturation of RBCL 1; 99.8 4.3E-16 9.4E-21 162.0 44.5 394 59-538 368-775 (1060)
68 PLN03218 maturation of RBCL 1; 99.8 2.6E-16 5.6E-21 163.7 42.3 256 70-343 415-678 (1060)
69 PLN03077 Protein ECB2; Provisi 99.8 8.2E-17 1.8E-21 169.8 37.0 385 61-538 288-712 (857)
70 PLN02789 farnesyltranstransfer 99.8 1.5E-17 3.2E-22 150.3 26.8 205 112-326 51-267 (320)
71 PLN03081 pentatricopeptide (PP 99.8 7.6E-17 1.7E-21 165.9 35.5 360 59-512 156-557 (697)
72 KOG1156|consensus 99.8 4.8E-16 1E-20 144.2 34.1 397 97-538 6-426 (700)
73 PLN02789 farnesyltranstransfer 99.8 8E-17 1.7E-21 145.6 27.4 213 71-291 47-267 (320)
74 COG2956 Predicted N-acetylgluc 99.8 7.7E-16 1.7E-20 130.9 30.6 239 102-353 39-288 (389)
75 KOG1127|consensus 99.8 3.5E-17 7.6E-22 158.2 25.4 439 80-536 387-869 (1238)
76 PLN03077 Protein ECB2; Provisi 99.8 5.5E-16 1.2E-20 163.6 33.8 357 58-511 320-719 (857)
77 KOG1840|consensus 99.8 3.6E-16 7.8E-21 147.4 26.5 239 97-343 198-479 (508)
78 KOG2376|consensus 99.8 3.2E-14 6.9E-19 130.8 36.2 414 59-529 10-504 (652)
79 KOG1840|consensus 99.8 5.8E-16 1.3E-20 146.0 25.5 238 60-309 198-479 (508)
80 cd05804 StaR_like StaR_like; a 99.8 5.4E-15 1.2E-19 140.5 32.4 209 97-345 5-217 (355)
81 KOG1915|consensus 99.8 1.5E-13 3.3E-18 123.0 38.4 417 60-514 72-502 (677)
82 PF12569 NARP1: NMDA receptor- 99.7 4.5E-13 9.7E-18 128.4 41.9 271 60-345 3-336 (517)
83 COG3071 HemY Uncharacterized e 99.7 1.5E-13 3.3E-18 120.9 34.4 277 61-348 84-362 (400)
84 TIGR03302 OM_YfiO outer membra 99.7 3.7E-15 8E-20 132.2 23.4 115 58-174 30-152 (235)
85 TIGR03302 OM_YfiO outer membra 99.7 7.3E-15 1.6E-19 130.3 23.9 198 96-345 31-234 (235)
86 cd05804 StaR_like StaR_like; a 99.7 7.5E-14 1.6E-18 132.6 31.4 274 59-343 4-293 (355)
87 KOG3785|consensus 99.7 1.4E-12 2.9E-17 112.7 33.1 257 69-349 30-317 (557)
88 PRK10370 formate-dependent nit 99.7 2.7E-14 5.8E-19 120.7 20.9 128 224-351 52-181 (198)
89 PRK14720 transcript cleavage f 99.7 5.9E-14 1.3E-18 140.4 25.6 262 136-518 31-312 (906)
90 KOG1915|consensus 99.6 9.6E-11 2.1E-15 105.5 41.7 388 58-528 104-551 (677)
91 PRK15359 type III secretion sy 99.6 1.2E-14 2.5E-19 116.4 14.9 97 252-349 31-127 (144)
92 PRK15359 type III secretion sy 99.6 1.6E-14 3.4E-19 115.7 15.6 121 159-288 15-135 (144)
93 PF12569 NARP1: NMDA receptor- 99.6 4.6E-12 1E-16 121.6 34.6 239 97-350 3-264 (517)
94 KOG3785|consensus 99.6 3.2E-12 7E-17 110.5 29.5 281 62-350 58-395 (557)
95 KOG3060|consensus 99.6 2E-12 4.2E-17 106.7 26.8 146 201-353 48-193 (289)
96 KOG3060|consensus 99.6 6.1E-13 1.3E-17 109.7 23.8 180 138-325 54-236 (289)
97 COG5010 TadD Flp pilus assembl 99.6 2E-13 4.3E-18 113.8 20.5 183 152-342 48-230 (257)
98 KOG1130|consensus 99.6 1.6E-14 3.6E-19 126.8 13.0 274 62-343 18-344 (639)
99 KOG4340|consensus 99.6 2E-12 4.3E-17 109.1 24.0 253 70-338 19-334 (459)
100 PRK10370 formate-dependent nit 99.6 5.8E-13 1.2E-17 112.7 20.7 154 105-280 23-179 (198)
101 COG3071 HemY Uncharacterized e 99.6 1.4E-11 3E-16 108.8 29.6 287 140-538 88-382 (400)
102 PRK14720 transcript cleavage f 99.6 5.6E-13 1.2E-17 133.5 22.3 226 165-530 25-270 (906)
103 KOG2376|consensus 99.6 6.3E-11 1.4E-15 109.6 33.1 232 99-350 13-260 (652)
104 PF04733 Coatomer_E: Coatomer 99.5 2.6E-13 5.5E-18 121.4 17.0 264 67-353 7-275 (290)
105 COG5010 TadD Flp pilus assembl 99.5 3.4E-12 7.4E-17 106.6 20.7 179 77-270 49-227 (257)
106 TIGR02552 LcrH_SycD type III s 99.5 4.9E-13 1.1E-17 107.2 15.0 121 232-353 4-124 (135)
107 KOG1128|consensus 99.5 1E-12 2.3E-17 124.2 18.2 224 95-345 395-618 (777)
108 PRK15179 Vi polysaccharide bio 99.5 6.4E-12 1.4E-16 125.3 24.2 157 153-316 68-224 (694)
109 KOG1130|consensus 99.5 1.4E-12 3E-17 115.0 15.2 116 102-218 21-148 (639)
110 PRK04841 transcriptional regul 99.5 2.7E-10 5.9E-15 122.4 36.2 383 64-518 344-766 (903)
111 KOG1128|consensus 99.5 5.4E-12 1.2E-16 119.4 19.8 221 60-310 397-617 (777)
112 TIGR02552 LcrH_SycD type III s 99.5 3.6E-12 7.8E-17 102.2 16.0 116 159-280 5-120 (135)
113 PRK04841 transcriptional regul 99.5 1.8E-10 4E-15 123.6 33.9 270 64-344 377-683 (903)
114 PRK15179 Vi polysaccharide bio 99.5 1.1E-11 2.3E-16 123.8 21.2 136 97-243 85-220 (694)
115 KOG0553|consensus 99.4 1.7E-12 3.6E-17 110.5 13.2 111 246-357 82-192 (304)
116 PF13525 YfiO: Outer membrane 99.4 2E-11 4.3E-16 104.4 20.0 180 58-264 2-197 (203)
117 PF04733 Coatomer_E: Coatomer 99.4 4.2E-12 9.2E-17 113.7 15.5 242 56-316 30-272 (290)
118 KOG4340|consensus 99.4 2E-11 4.4E-16 103.1 17.7 188 146-343 20-207 (459)
119 KOG0553|consensus 99.4 4E-12 8.8E-17 108.2 13.4 113 61-181 81-193 (304)
120 PRK15363 pathogenicity island 99.4 1.1E-11 2.4E-16 96.6 14.8 110 238-348 27-137 (157)
121 PRK10866 outer membrane biogen 99.4 8.6E-11 1.9E-15 102.7 22.0 91 59-150 30-120 (243)
122 COG4783 Putative Zn-dependent 99.4 2.7E-09 5.9E-14 97.2 28.9 134 202-342 303-436 (484)
123 KOG2047|consensus 99.4 3.4E-08 7.4E-13 92.8 36.1 270 62-345 249-581 (835)
124 PRK15363 pathogenicity island 99.4 3.5E-11 7.5E-16 93.9 13.7 101 97-202 34-134 (157)
125 KOG2047|consensus 99.3 2.3E-08 5.1E-13 93.9 34.4 411 61-512 102-615 (835)
126 COG4783 Putative Zn-dependent 99.3 1.5E-09 3.2E-14 99.0 25.5 158 168-349 303-461 (484)
127 PF13525 YfiO: Outer membrane 99.3 7.8E-10 1.7E-14 94.6 21.1 185 96-332 3-196 (203)
128 PF09976 TPR_21: Tetratricopep 99.3 1.6E-10 3.6E-15 93.2 16.1 136 60-198 10-145 (145)
129 PRK10866 outer membrane biogen 99.3 2.7E-09 5.9E-14 93.4 24.1 197 97-338 31-236 (243)
130 PLN03088 SGT1, suppressor of 99.3 9.3E-11 2E-15 109.3 15.0 114 63-184 4-117 (356)
131 COG4785 NlpI Lipoprotein NlpI, 99.3 1.2E-09 2.5E-14 88.2 18.9 199 131-344 60-267 (297)
132 KOG1941|consensus 99.3 2.7E-09 5.9E-14 93.0 21.6 249 60-344 5-276 (518)
133 KOG2053|consensus 99.2 1.4E-07 3E-12 92.3 34.9 242 62-312 10-258 (932)
134 PLN03088 SGT1, suppressor of 99.2 2.3E-10 4.9E-15 106.8 15.3 108 249-357 6-113 (356)
135 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.2E-10 4.8E-15 89.6 12.7 110 62-173 3-112 (119)
136 PF13512 TPR_18: Tetratricopep 99.2 7E-10 1.5E-14 85.0 13.7 93 57-150 6-98 (142)
137 COG4235 Cytochrome c biogenesi 99.2 6.1E-10 1.3E-14 95.9 14.9 125 225-349 136-262 (287)
138 PRK02603 photosystem I assembl 99.2 1.9E-09 4.1E-14 89.9 17.4 122 95-244 32-153 (172)
139 KOG3081|consensus 99.2 1.5E-07 3.2E-12 79.1 27.2 261 65-351 12-279 (299)
140 PRK11906 transcriptional regul 99.2 1.3E-08 2.9E-13 93.5 22.8 182 164-346 241-439 (458)
141 PF09976 TPR_21: Tetratricopep 99.2 2.3E-09 5E-14 86.4 15.5 115 225-341 25-145 (145)
142 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.2E-09 2.6E-14 85.5 13.5 109 98-208 2-113 (119)
143 PRK10803 tol-pal system protei 99.1 1.5E-09 3.2E-14 95.5 15.1 113 60-174 141-254 (263)
144 COG4235 Cytochrome c biogenesi 99.1 2.6E-09 5.5E-14 92.2 15.8 126 152-280 137-262 (287)
145 PF14938 SNAP: Soluble NSF att 99.1 3.1E-08 6.8E-13 89.7 23.6 212 98-346 35-269 (282)
146 KOG4648|consensus 99.1 1.9E-10 4E-15 99.3 8.4 245 248-526 100-344 (536)
147 COG4105 ComL DNA uptake lipopr 99.1 1.7E-08 3.7E-13 85.1 19.7 193 59-278 32-237 (254)
148 CHL00033 ycf3 photosystem I as 99.1 4.8E-09 1E-13 87.2 16.4 112 72-186 10-121 (168)
149 PF13432 TPR_16: Tetratricopep 99.1 1.1E-10 2.4E-15 79.4 5.5 61 457-517 5-65 (65)
150 COG1729 Uncharacterized protei 99.1 5.4E-09 1.2E-13 89.1 15.8 115 60-176 140-254 (262)
151 PF13414 TPR_11: TPR repeat; P 99.1 4.9E-10 1.1E-14 77.4 8.0 67 60-129 2-69 (69)
152 cd00189 TPR Tetratricopeptide 99.1 1.8E-09 3.9E-14 80.9 11.8 99 247-346 2-100 (100)
153 PF13414 TPR_11: TPR repeat; P 99.1 4.3E-10 9.4E-15 77.7 7.1 66 279-345 3-69 (69)
154 COG4785 NlpI Lipoprotein NlpI, 99.1 7.2E-09 1.6E-13 83.8 14.8 96 219-315 73-168 (297)
155 PF13432 TPR_16: Tetratricopep 99.1 7.2E-10 1.6E-14 75.4 7.9 65 65-132 1-65 (65)
156 PRK11906 transcriptional regul 99.1 1.6E-08 3.4E-13 93.0 18.6 160 63-236 257-432 (458)
157 PF14938 SNAP: Soluble NSF att 99.1 5.5E-10 1.2E-14 101.1 8.7 140 60-201 34-185 (282)
158 COG0457 NrfG FOG: TPR repeat [ 99.1 1.7E-06 3.6E-11 77.8 31.7 226 74-312 36-268 (291)
159 PRK10153 DNA-binding transcrip 99.1 2.6E-08 5.7E-13 96.8 20.4 86 262-349 401-488 (517)
160 PRK02603 photosystem I assembl 99.0 6.9E-09 1.5E-13 86.5 14.1 120 60-204 34-153 (172)
161 KOG1070|consensus 99.0 2.1E-07 4.4E-12 95.2 26.6 219 80-310 1443-1664(1710)
162 PF12895 Apc3: Anaphase-promot 99.0 6.6E-10 1.4E-14 80.0 6.8 81 258-340 2-84 (84)
163 KOG0543|consensus 99.0 1.5E-08 3.3E-13 90.7 16.5 133 102-241 212-356 (397)
164 KOG0543|consensus 99.0 9.6E-09 2.1E-13 91.9 15.1 137 61-202 208-357 (397)
165 PRK10153 DNA-binding transcrip 99.0 3.2E-08 6.9E-13 96.2 19.9 140 59-207 337-489 (517)
166 cd00189 TPR Tetratricopeptide 99.0 8.6E-09 1.9E-13 77.1 12.8 95 175-275 4-98 (100)
167 PF12895 Apc3: Anaphase-promot 99.0 9.2E-10 2E-14 79.3 6.7 81 112-196 3-83 (84)
168 KOG4648|consensus 99.0 2.4E-10 5.1E-15 98.7 4.2 228 101-349 100-336 (536)
169 PF14559 TPR_19: Tetratricopep 99.0 7.8E-10 1.7E-14 76.2 5.8 67 460-526 2-68 (68)
170 COG0457 NrfG FOG: TPR repeat [ 99.0 1.4E-06 3.1E-11 78.2 29.2 226 111-346 36-268 (291)
171 PRK15331 chaperone protein Sic 99.0 1E-08 2.2E-13 80.5 12.4 99 59-165 35-133 (165)
172 KOG1941|consensus 99.0 1.1E-07 2.3E-12 83.4 19.8 275 68-343 50-360 (518)
173 CHL00033 ycf3 photosystem I as 99.0 1E-08 2.3E-13 85.2 13.3 122 226-348 14-154 (168)
174 PRK15331 chaperone protein Sic 99.0 1.1E-08 2.4E-13 80.4 11.4 108 240-349 32-139 (165)
175 COG4105 ComL DNA uptake lipopr 98.9 1.2E-06 2.6E-11 74.2 23.1 181 139-338 37-228 (254)
176 KOG1070|consensus 98.9 4.1E-07 8.9E-12 93.1 23.9 226 112-350 1438-1670(1710)
177 PRK10803 tol-pal system protei 98.9 4.2E-08 9.2E-13 86.4 15.0 109 98-208 142-254 (263)
178 KOG3081|consensus 98.9 1.9E-06 4.2E-11 72.6 22.1 238 59-315 39-277 (299)
179 COG3898 Uncharacterized membra 98.9 1.9E-05 4E-10 70.5 29.1 271 65-347 88-362 (531)
180 KOG4234|consensus 98.9 8.1E-08 1.8E-12 76.8 12.8 113 99-212 96-209 (271)
181 PF12688 TPR_5: Tetratrico pep 98.9 8.3E-08 1.8E-12 72.8 12.5 100 63-164 3-102 (120)
182 PF13371 TPR_9: Tetratricopept 98.9 8.2E-09 1.8E-13 72.2 6.6 67 459-525 5-71 (73)
183 KOG2053|consensus 98.8 2E-05 4.3E-10 77.8 31.2 225 109-347 20-259 (932)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.3E-07 2.8E-12 87.8 14.7 117 224-344 182-298 (395)
185 COG1729 Uncharacterized protei 98.8 1.8E-07 3.8E-12 80.0 14.0 107 101-209 144-253 (262)
186 PF12688 TPR_5: Tetratrico pep 98.8 2.1E-07 4.6E-12 70.6 12.4 99 99-199 2-103 (120)
187 PF13512 TPR_18: Tetratricopep 98.8 3.7E-07 8E-12 70.3 13.7 123 97-246 9-134 (142)
188 KOG2471|consensus 98.8 4.4E-06 9.5E-11 76.5 22.5 298 57-360 13-381 (696)
189 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 3.2E-07 7E-12 85.2 15.5 121 177-307 175-295 (395)
190 PF14559 TPR_19: Tetratricopep 98.7 7E-08 1.5E-12 66.3 8.0 62 293-354 4-65 (68)
191 KOG4555|consensus 98.7 7.1E-07 1.5E-11 66.0 13.1 105 61-169 43-147 (175)
192 PF07079 DUF1347: Protein of u 98.7 0.00023 4.9E-09 65.2 34.6 134 62-200 7-157 (549)
193 KOG3617|consensus 98.7 3.3E-05 7.2E-10 75.4 27.3 170 66-272 805-994 (1416)
194 KOG4234|consensus 98.7 5.3E-07 1.2E-11 72.2 12.6 106 62-172 96-203 (271)
195 PF13371 TPR_9: Tetratricopept 98.7 1.7E-07 3.7E-12 65.5 8.3 57 293-349 8-64 (73)
196 KOG2300|consensus 98.7 0.00034 7.4E-09 64.5 37.0 133 62-194 8-150 (629)
197 COG3898 Uncharacterized membra 98.7 0.00012 2.5E-09 65.6 27.0 204 142-355 90-303 (531)
198 KOG2796|consensus 98.5 0.00038 8.2E-09 58.9 26.0 231 97-348 68-320 (366)
199 COG4700 Uncharacterized protei 98.5 3E-05 6.6E-10 61.7 18.3 149 184-341 69-220 (251)
200 COG4700 Uncharacterized protei 98.5 5.7E-05 1.2E-09 60.2 19.3 151 71-237 66-219 (251)
201 PF13428 TPR_14: Tetratricopep 98.5 1.7E-07 3.8E-12 57.3 4.2 43 483-525 1-43 (44)
202 KOG1586|consensus 98.5 2.2E-05 4.8E-10 64.9 16.9 186 225-521 28-233 (288)
203 KOG1585|consensus 98.5 8.5E-05 1.8E-09 62.0 20.2 112 225-338 124-251 (308)
204 KOG2796|consensus 98.5 0.0005 1.1E-08 58.2 24.9 230 59-313 67-319 (366)
205 KOG3617|consensus 98.5 0.00012 2.5E-09 71.8 24.2 191 104-343 806-996 (1416)
206 KOG2471|consensus 98.5 0.00036 7.8E-09 64.4 25.6 228 56-290 95-380 (696)
207 PF13424 TPR_12: Tetratricopep 98.4 1.4E-06 3.1E-11 61.6 7.9 69 97-166 4-75 (78)
208 KOG1914|consensus 98.4 0.0017 3.7E-08 61.0 32.6 59 459-517 411-471 (656)
209 KOG4555|consensus 98.4 3.1E-05 6.7E-10 57.6 14.6 99 248-347 46-148 (175)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.5E-06 3.2E-11 80.2 9.2 70 240-310 70-142 (453)
211 PF06552 TOM20_plant: Plant sp 98.4 9.4E-06 2E-10 64.7 11.5 72 188-259 8-83 (186)
212 PF00515 TPR_1: Tetratricopept 98.3 7.9E-07 1.7E-11 51.0 3.9 34 483-516 1-34 (34)
213 PF13431 TPR_17: Tetratricopep 98.3 3.7E-07 8E-12 51.7 2.4 33 471-503 1-33 (34)
214 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.3E-06 7.2E-11 77.9 9.7 70 200-275 70-142 (453)
215 KOG1585|consensus 98.3 0.00095 2.1E-08 56.0 22.5 200 97-305 30-252 (308)
216 PF13424 TPR_12: Tetratricopep 98.3 7.3E-07 1.6E-11 63.1 4.1 64 279-343 5-75 (78)
217 KOG1586|consensus 98.3 0.00029 6.2E-09 58.6 18.9 125 225-350 87-231 (288)
218 PF04184 ST7: ST7 protein; In 98.3 0.00028 6.1E-09 65.7 20.6 57 66-127 173-229 (539)
219 KOG2610|consensus 98.3 0.00012 2.7E-09 64.0 17.1 157 178-341 110-274 (491)
220 PF06552 TOM20_plant: Plant sp 98.2 3.2E-05 6.9E-10 61.7 12.2 93 153-245 7-114 (186)
221 PF07719 TPR_2: Tetratricopept 98.2 2E-06 4.3E-11 49.3 3.9 34 483-516 1-34 (34)
222 KOG4642|consensus 98.2 2.1E-05 4.5E-10 65.3 10.7 99 60-166 9-107 (284)
223 PF05843 Suf: Suppressor of fo 98.2 8E-05 1.7E-09 67.3 15.6 125 225-350 15-143 (280)
224 PF10300 DUF3808: Protein of u 98.2 0.0048 1E-07 60.2 28.0 181 233-514 179-378 (468)
225 KOG4642|consensus 98.2 5E-06 1.1E-10 68.8 6.4 90 252-342 17-106 (284)
226 KOG4507|consensus 98.2 0.00017 3.8E-09 67.9 16.8 122 82-210 200-322 (886)
227 PF05843 Suf: Suppressor of fo 98.1 0.00017 3.7E-09 65.2 16.3 135 173-313 3-140 (280)
228 KOG0530|consensus 98.1 0.004 8.8E-08 53.0 22.9 176 74-257 56-233 (318)
229 PF13428 TPR_14: Tetratricopep 98.1 9.9E-06 2.1E-10 49.4 4.8 40 247-286 3-42 (44)
230 PF13281 DUF4071: Domain of un 98.0 0.0033 7.1E-08 57.9 22.7 187 138-349 143-340 (374)
231 COG2976 Uncharacterized protei 98.0 0.00058 1.3E-08 55.3 15.7 140 62-205 54-193 (207)
232 KOG2300|consensus 98.0 0.011 2.5E-07 54.9 30.4 277 60-342 45-432 (629)
233 PF10300 DUF3808: Protein of u 98.0 0.0006 1.3E-08 66.4 18.6 159 183-343 200-376 (468)
234 COG3118 Thioredoxin domain-con 98.0 0.00064 1.4E-08 59.1 16.5 135 61-203 134-268 (304)
235 KOG3616|consensus 98.0 0.0031 6.8E-08 61.5 22.6 29 314-342 882-910 (1636)
236 PF10345 Cohesin_load: Cohesin 98.0 0.025 5.5E-07 57.7 32.1 155 116-272 39-206 (608)
237 KOG0545|consensus 98.0 0.00014 3E-09 60.8 11.7 108 98-206 178-299 (329)
238 KOG0376|consensus 98.0 1.6E-05 3.4E-10 73.3 6.9 119 251-370 10-128 (476)
239 KOG2610|consensus 98.0 0.00048 1E-08 60.5 15.4 161 101-272 106-274 (491)
240 PF13431 TPR_17: Tetratricopep 98.0 7.8E-06 1.7E-10 46.3 3.1 32 303-334 2-33 (34)
241 PF04184 ST7: ST7 protein; In 98.0 0.001 2.2E-08 62.1 17.8 144 142-306 174-321 (539)
242 KOG0551|consensus 97.9 0.0001 2.2E-09 64.5 10.4 105 97-202 80-184 (390)
243 KOG3616|consensus 97.9 0.0089 1.9E-07 58.5 24.1 221 71-340 454-687 (1636)
244 KOG0376|consensus 97.9 2E-05 4.4E-10 72.6 6.2 113 62-182 5-117 (476)
245 KOG0551|consensus 97.9 0.00011 2.3E-09 64.4 10.1 109 55-168 75-184 (390)
246 PF13281 DUF4071: Domain of un 97.9 0.0034 7.4E-08 57.8 20.3 120 171-295 141-274 (374)
247 PF13181 TPR_8: Tetratricopept 97.9 1.4E-05 3.1E-10 45.7 3.2 33 484-516 2-34 (34)
248 KOG0545|consensus 97.9 0.00017 3.7E-09 60.2 10.4 102 247-349 180-299 (329)
249 KOG0530|consensus 97.9 0.011 2.3E-07 50.5 20.9 249 74-352 39-307 (318)
250 PF00515 TPR_1: Tetratricopept 97.8 4E-05 8.7E-10 43.7 4.1 33 315-347 2-34 (34)
251 KOG1550|consensus 97.8 0.017 3.8E-07 57.9 25.0 180 153-341 228-424 (552)
252 KOG1550|consensus 97.8 0.054 1.2E-06 54.4 28.2 180 114-309 228-426 (552)
253 PF10345 Cohesin_load: Cohesin 97.8 0.061 1.3E-06 55.0 39.1 276 56-338 54-428 (608)
254 KOG1258|consensus 97.8 0.046 9.9E-07 52.7 32.6 264 78-350 62-402 (577)
255 PF08631 SPO22: Meiosis protei 97.8 0.031 6.7E-07 50.7 25.8 131 71-202 3-152 (278)
256 COG2909 MalT ATP-dependent tra 97.7 0.021 4.6E-07 57.6 23.5 244 97-342 414-687 (894)
257 PF07719 TPR_2: Tetratricopept 97.7 8.2E-05 1.8E-09 42.4 4.3 31 100-130 3-33 (34)
258 PF02259 FAT: FAT domain; Int 97.7 0.052 1.1E-06 51.5 27.7 66 242-308 143-212 (352)
259 PF02259 FAT: FAT domain; Int 97.7 0.025 5.4E-07 53.7 23.5 121 225-346 160-341 (352)
260 COG2976 Uncharacterized protei 97.7 0.0031 6.7E-08 51.3 13.9 105 60-170 88-192 (207)
261 KOG1914|consensus 97.6 0.027 5.8E-07 53.4 21.2 217 83-311 267-503 (656)
262 KOG4507|consensus 97.5 0.0068 1.5E-07 57.7 16.5 100 257-357 619-719 (886)
263 PF07079 DUF1347: Protein of u 97.5 0.075 1.6E-06 49.4 31.6 142 98-240 6-157 (549)
264 KOG1308|consensus 97.5 3E-05 6.5E-10 68.1 0.9 90 459-548 124-213 (377)
265 COG3118 Thioredoxin domain-con 97.5 0.013 2.7E-07 51.4 16.4 129 140-275 138-266 (304)
266 PF03704 BTAD: Bacterial trans 97.5 0.005 1.1E-07 49.7 13.7 62 137-199 63-124 (146)
267 PF13174 TPR_6: Tetratricopept 97.5 0.00014 3E-09 41.1 3.3 33 484-516 1-33 (33)
268 KOG0985|consensus 97.5 0.16 3.6E-06 52.1 31.6 205 98-336 984-1188(1666)
269 COG4649 Uncharacterized protei 97.5 0.032 7E-07 44.4 16.9 153 60-215 57-210 (221)
270 PF03704 BTAD: Bacterial trans 97.4 0.0065 1.4E-07 49.1 13.6 62 281-343 64-125 (146)
271 PF13176 TPR_7: Tetratricopept 97.4 9.2E-05 2E-09 42.7 1.9 30 485-514 1-30 (36)
272 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00082 1.8E-08 42.2 6.2 46 484-529 2-47 (53)
273 KOG3783|consensus 97.3 0.062 1.4E-06 51.2 20.2 245 79-347 251-524 (546)
274 PF12968 DUF3856: Domain of Un 97.3 0.012 2.6E-07 43.4 11.9 101 64-165 12-128 (144)
275 KOG1308|consensus 97.3 0.00038 8.3E-09 61.4 5.1 92 107-203 123-214 (377)
276 KOG1258|consensus 97.3 0.2 4.3E-06 48.6 23.4 186 136-328 297-489 (577)
277 PF13181 TPR_8: Tetratricopept 97.3 0.00047 1E-08 39.2 3.7 32 315-346 2-33 (34)
278 KOG3824|consensus 97.2 0.00054 1.2E-08 59.4 5.1 73 454-526 121-193 (472)
279 COG0790 FOG: TPR repeat, SEL1 97.2 0.18 3.9E-06 46.3 22.2 79 263-346 173-269 (292)
280 PF04910 Tcf25: Transcriptiona 97.2 0.058 1.3E-06 50.5 18.4 171 163-347 32-226 (360)
281 COG2909 MalT ATP-dependent tra 97.2 0.36 7.9E-06 49.2 27.5 242 59-307 413-686 (894)
282 KOG0985|consensus 97.1 0.46 1E-05 49.1 33.1 244 60-342 983-1248(1666)
283 PF08424 NRDE-2: NRDE-2, neces 97.1 0.058 1.3E-06 50.0 17.4 120 225-344 45-184 (321)
284 PF04910 Tcf25: Transcriptiona 97.0 0.042 9.1E-07 51.5 16.2 106 87-197 32-165 (360)
285 COG0790 FOG: TPR repeat, SEL1 97.0 0.26 5.5E-06 45.3 24.6 190 109-312 52-269 (292)
286 PF08631 SPO22: Meiosis protei 97.0 0.25 5.5E-06 44.8 26.0 226 108-341 3-273 (278)
287 smart00028 TPR Tetratricopepti 97.0 0.0011 2.4E-08 37.1 3.4 33 484-516 2-34 (34)
288 PF14561 TPR_20: Tetratricopep 96.9 0.004 8.6E-08 44.7 6.6 67 468-534 7-75 (90)
289 KOG2041|consensus 96.9 0.27 5.8E-06 48.4 20.1 240 59-340 690-936 (1189)
290 KOG1464|consensus 96.8 0.27 5.8E-06 42.5 18.3 79 48-127 13-94 (440)
291 PF04781 DUF627: Protein of un 96.8 0.022 4.8E-07 41.9 9.5 106 67-200 2-107 (111)
292 PF08424 NRDE-2: NRDE-2, neces 96.8 0.11 2.3E-06 48.2 16.5 165 82-276 6-185 (321)
293 PF13176 TPR_7: Tetratricopept 96.7 0.0027 5.9E-08 36.5 3.6 28 316-343 1-28 (36)
294 PF10602 RPN7: 26S proteasome 96.7 0.047 1E-06 45.3 12.1 98 99-198 37-140 (177)
295 PRK10941 hypothetical protein; 96.7 0.0069 1.5E-07 53.7 7.5 73 456-528 188-260 (269)
296 KOG0890|consensus 96.6 1.8 4E-05 49.4 31.8 136 66-212 1388-1524(2382)
297 PRK10941 hypothetical protein; 96.6 0.025 5.4E-07 50.2 10.6 75 135-210 180-254 (269)
298 KOG2396|consensus 96.6 0.052 1.1E-06 51.0 12.8 90 189-284 89-179 (568)
299 KOG1464|consensus 96.6 0.32 7E-06 42.0 16.4 55 110-165 39-93 (440)
300 PF09613 HrpB1_HrpK: Bacterial 96.6 0.29 6.2E-06 39.1 14.9 82 136-218 10-91 (160)
301 KOG0890|consensus 96.5 2.2 4.8E-05 48.8 29.3 81 261-344 1645-1732(2382)
302 PF09613 HrpB1_HrpK: Bacterial 96.5 0.081 1.8E-06 42.2 11.4 83 247-330 12-94 (160)
303 COG4976 Predicted methyltransf 96.4 0.0051 1.1E-07 51.3 4.7 59 460-518 6-64 (287)
304 KOG2396|consensus 96.3 0.16 3.5E-06 47.9 14.1 98 226-323 86-183 (568)
305 PRK13184 pknD serine/threonine 96.2 1 2.2E-05 47.8 20.8 223 105-340 482-714 (932)
306 PF04781 DUF627: Protein of un 96.2 0.16 3.4E-06 37.5 10.7 28 143-171 3-30 (111)
307 KOG3824|consensus 96.2 0.023 5E-07 49.6 7.5 72 141-213 121-192 (472)
308 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.04 8.7E-07 34.7 6.5 37 316-352 3-39 (53)
309 PF14561 TPR_20: Tetratricopep 96.1 0.09 2E-06 37.8 9.0 48 231-278 8-55 (90)
310 PRK15180 Vi polysaccharide bio 96.0 1.4 3E-05 41.7 23.2 135 63-205 291-425 (831)
311 KOG3364|consensus 96.0 0.18 4E-06 38.5 10.6 76 97-175 31-109 (149)
312 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.4 3E-05 41.4 21.6 243 83-350 290-538 (660)
313 PRK15180 Vi polysaccharide bio 96.0 0.093 2E-06 49.1 10.9 127 147-280 300-426 (831)
314 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.4 3E-05 41.4 31.6 134 59-201 40-191 (660)
315 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.061 1.3E-06 36.6 7.1 67 60-126 5-71 (80)
316 TIGR02561 HrpB1_HrpK type III 95.9 0.61 1.3E-05 36.6 13.7 82 136-218 10-91 (153)
317 smart00028 TPR Tetratricopepti 95.9 0.021 4.4E-07 31.5 4.2 30 173-202 3-32 (34)
318 KOG3364|consensus 95.8 0.046 1E-06 41.6 6.5 67 463-529 49-117 (149)
319 PF09986 DUF2225: Uncharacteri 95.6 0.32 7E-06 41.8 12.2 90 113-203 92-197 (214)
320 COG3914 Spy Predicted O-linked 95.6 0.4 8.7E-06 46.4 13.5 130 189-323 49-185 (620)
321 PF10602 RPN7: 26S proteasome 95.5 0.59 1.3E-05 38.9 13.0 63 137-200 37-102 (177)
322 PF12862 Apc5: Anaphase-promot 95.4 0.12 2.6E-06 37.7 7.8 62 69-130 6-73 (94)
323 TIGR02561 HrpB1_HrpK type III 95.3 0.39 8.5E-06 37.6 10.3 73 257-330 22-94 (153)
324 KOG2422|consensus 95.2 2.4 5.2E-05 41.3 17.2 165 74-244 251-452 (665)
325 COG3914 Spy Predicted O-linked 95.2 1.6 3.5E-05 42.5 16.2 133 117-252 50-183 (620)
326 PF13374 TPR_10: Tetratricopep 95.1 0.033 7.1E-07 33.2 3.5 30 483-512 2-31 (42)
327 PF09986 DUF2225: Uncharacteri 95.0 0.6 1.3E-05 40.1 11.9 105 74-179 90-208 (214)
328 PF10516 SHNi-TPR: SHNi-TPR; 95.0 0.037 7.9E-07 31.9 3.0 31 483-513 1-31 (38)
329 PF07720 TPR_3: Tetratricopept 95.0 0.061 1.3E-06 30.7 3.9 34 483-516 1-36 (36)
330 COG5191 Uncharacterized conser 95.0 0.069 1.5E-06 46.9 6.0 85 235-319 97-181 (435)
331 KOG1310|consensus 94.9 0.15 3.3E-06 48.4 8.5 104 59-170 372-478 (758)
332 KOG1839|consensus 94.9 0.6 1.3E-05 49.9 13.5 138 59-200 930-1086(1236)
333 KOG2422|consensus 94.9 1.6 3.5E-05 42.4 15.1 47 152-198 253-311 (665)
334 COG1747 Uncharacterized N-term 94.8 4 8.6E-05 39.2 21.1 85 107-199 75-159 (711)
335 PF12968 DUF3856: Domain of Un 94.8 0.89 1.9E-05 33.9 10.4 88 255-343 19-129 (144)
336 COG4649 Uncharacterized protei 94.8 1.8 3.8E-05 35.0 16.4 130 152-288 73-209 (221)
337 KOG1310|consensus 94.7 0.15 3.2E-06 48.4 7.7 92 258-349 387-480 (758)
338 KOG2581|consensus 94.6 3.8 8.3E-05 38.1 20.6 144 61-205 124-281 (493)
339 KOG2041|consensus 94.5 5.8 0.00013 39.7 21.5 207 68-340 670-878 (1189)
340 KOG4814|consensus 94.5 5.5 0.00012 39.4 20.9 100 62-166 355-457 (872)
341 COG2912 Uncharacterized conser 94.4 0.13 2.9E-06 44.9 6.5 70 459-528 191-260 (269)
342 COG4976 Predicted methyltransf 94.4 0.079 1.7E-06 44.5 4.8 60 145-205 4-63 (287)
343 PF15015 NYD-SP12_N: Spermatog 94.3 0.62 1.3E-05 43.1 10.5 99 58-161 169-286 (569)
344 COG5191 Uncharacterized conser 94.2 0.13 2.7E-06 45.4 5.9 94 267-361 95-189 (435)
345 KOG1463|consensus 94.2 4.1 9E-05 36.9 22.0 61 63-123 6-73 (411)
346 COG5159 RPN6 26S proteasome re 94.1 3.8 8.2E-05 36.1 23.0 271 65-345 7-316 (421)
347 PF07721 TPR_4: Tetratricopept 94.1 0.07 1.5E-06 27.8 2.6 26 483-508 1-26 (26)
348 KOG4814|consensus 93.9 2.2 4.7E-05 42.1 13.8 94 140-240 358-457 (872)
349 KOG0128|consensus 93.8 8.9 0.00019 39.3 34.6 279 60-352 78-385 (881)
350 PF12862 Apc5: Anaphase-promot 93.8 0.32 6.9E-06 35.5 6.6 58 108-166 8-70 (94)
351 PF13374 TPR_10: Tetratricopep 93.7 0.12 2.6E-06 30.6 3.7 30 315-344 3-32 (42)
352 KOG0529|consensus 93.6 4 8.6E-05 38.1 14.4 130 225-354 89-235 (421)
353 PRK13184 pknD serine/threonine 93.5 12 0.00027 40.0 25.6 133 67-205 481-625 (932)
354 PF04053 Coatomer_WDAD: Coatom 93.5 6.4 0.00014 38.3 16.6 106 67-198 267-374 (443)
355 KOG1538|consensus 93.5 1.8 4E-05 42.6 12.5 48 219-269 781-828 (1081)
356 KOG3807|consensus 93.2 6.3 0.00014 35.6 14.9 30 316-345 277-306 (556)
357 KOG1538|consensus 93.1 8.3 0.00018 38.3 16.3 62 62-123 586-657 (1081)
358 KOG0529|consensus 93.1 7.6 0.00016 36.4 16.1 131 153-285 91-235 (421)
359 COG2912 Uncharacterized conser 93.1 0.81 1.7E-05 40.2 8.9 70 139-209 184-253 (269)
360 PF04053 Coatomer_WDAD: Coatom 92.9 10 0.00022 37.0 18.6 159 144-340 269-428 (443)
361 PF07721 TPR_4: Tetratricopept 92.6 0.23 5.1E-06 25.8 3.2 24 315-338 2-25 (26)
362 KOG3783|consensus 92.1 13 0.00027 36.3 22.9 140 179-321 198-344 (546)
363 PF04190 DUF410: Protein of un 91.9 8.9 0.00019 34.3 15.0 100 60-160 9-113 (260)
364 PF10579 Rapsyn_N: Rapsyn N-te 91.9 2.2 4.8E-05 29.3 7.9 55 104-160 12-66 (80)
365 KOG1463|consensus 91.7 10 0.00022 34.5 14.4 175 102-278 132-320 (411)
366 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.43 9.3E-06 27.6 3.8 29 172-200 2-30 (38)
367 PF07720 TPR_3: Tetratricopept 91.6 0.57 1.2E-05 26.7 4.2 21 100-120 3-23 (36)
368 COG5159 RPN6 26S proteasome re 91.4 9.8 0.00021 33.7 22.1 96 247-343 127-235 (421)
369 KOG3807|consensus 91.3 11 0.00024 34.1 18.4 62 61-127 184-245 (556)
370 KOG1839|consensus 91.3 2.4 5.1E-05 45.7 11.3 163 174-343 935-1128(1236)
371 COG1747 Uncharacterized N-term 91.2 15 0.00033 35.5 21.1 191 69-278 74-292 (711)
372 COG3629 DnrI DNA-binding trans 91.0 1.7 3.6E-05 38.8 8.6 62 137-199 154-215 (280)
373 PF11207 DUF2989: Protein of u 90.6 2.8 6E-05 35.1 8.9 77 109-191 117-198 (203)
374 PF10373 EST1_DNA_bind: Est1 D 90.4 0.87 1.9E-05 41.4 6.8 62 468-529 1-62 (278)
375 COG3629 DnrI DNA-binding trans 89.4 2 4.3E-05 38.3 7.8 95 62-166 116-216 (280)
376 PF15015 NYD-SP12_N: Spermatog 89.4 3.1 6.7E-05 38.8 9.0 55 249-304 232-286 (569)
377 PF09670 Cas_Cas02710: CRISPR- 89.3 7.3 0.00016 37.1 12.0 65 63-127 133-198 (379)
378 PF00244 14-3-3: 14-3-3 protei 89.2 10 0.00023 33.3 12.1 26 142-168 7-32 (236)
379 TIGR03504 FimV_Cterm FimV C-te 89.2 0.77 1.7E-05 27.6 3.5 27 486-512 2-28 (44)
380 PRK11619 lytic murein transgly 88.9 31 0.00068 35.7 33.5 127 61-202 33-160 (644)
381 COG4941 Predicted RNA polymera 88.6 19 0.00041 32.8 15.9 186 153-354 212-405 (415)
382 KOG2114|consensus 88.4 26 0.00057 36.3 15.2 28 172-199 369-396 (933)
383 PF09670 Cas_Cas02710: CRISPR- 87.9 16 0.00034 34.9 13.3 64 102-166 135-198 (379)
384 PF00244 14-3-3: 14-3-3 protei 87.9 5.2 0.00011 35.2 9.4 63 63-127 3-66 (236)
385 TIGR03504 FimV_Cterm FimV C-te 87.7 1.7 3.7E-05 26.1 4.3 25 65-89 3-27 (44)
386 PF14863 Alkyl_sulf_dimr: Alky 87.1 2.4 5.1E-05 33.5 6.1 56 481-536 68-123 (141)
387 KOG0546|consensus 86.8 1 2.2E-05 40.9 4.3 82 459-540 285-366 (372)
388 smart00386 HAT HAT (Half-A-TPR 85.9 1.9 4.1E-05 23.4 3.9 28 497-524 1-28 (33)
389 PF10255 Paf67: RNA polymerase 85.9 7 0.00015 37.2 9.5 65 99-165 123-192 (404)
390 PF12854 PPR_1: PPR repeat 85.6 2.5 5.4E-05 23.7 4.1 27 313-339 6-32 (34)
391 PF14863 Alkyl_sulf_dimr: Alky 85.2 2.9 6.2E-05 33.0 5.7 51 60-113 69-119 (141)
392 KOG0128|consensus 85.2 51 0.0011 34.3 28.0 394 112-512 93-526 (881)
393 PHA02537 M terminase endonucle 84.7 19 0.00041 31.2 10.8 25 68-92 90-114 (230)
394 COG4455 ImpE Protein of avirul 84.7 2.2 4.8E-05 36.0 5.0 60 459-518 11-70 (273)
395 PF10373 EST1_DNA_bind: Est1 D 84.5 5.1 0.00011 36.4 8.1 60 156-215 1-60 (278)
396 COG4455 ImpE Protein of avirul 84.2 9.5 0.00021 32.4 8.4 63 293-355 14-76 (273)
397 PF09205 DUF1955: Domain of un 84.0 13 0.00028 28.8 8.2 61 283-343 89-149 (161)
398 smart00386 HAT HAT (Half-A-TPR 83.9 3.6 7.8E-05 22.2 4.4 24 296-319 3-26 (33)
399 PF04190 DUF410: Protein of un 83.8 32 0.00069 30.8 17.4 27 243-269 88-114 (260)
400 COG3947 Response regulator con 83.8 5.2 0.00011 35.5 7.0 59 100-163 281-339 (361)
401 PF12854 PPR_1: PPR repeat 83.7 3.4 7.3E-05 23.1 4.1 27 244-270 6-32 (34)
402 KOG0686|consensus 82.6 9 0.0002 35.8 8.4 100 97-198 149-256 (466)
403 KOG2581|consensus 81.5 48 0.001 31.3 21.8 208 66-278 35-280 (493)
404 PF10255 Paf67: RNA polymerase 80.7 3.8 8.3E-05 38.8 5.7 61 138-199 124-192 (404)
405 KOG2063|consensus 80.7 84 0.0018 33.6 19.4 170 101-271 507-710 (877)
406 COG5536 BET4 Protein prenyltra 80.4 42 0.00091 29.9 11.2 130 226-356 89-235 (328)
407 COG3947 Response regulator con 80.4 29 0.00063 31.1 10.2 58 140-198 283-340 (361)
408 PRK11619 lytic murein transgly 80.0 80 0.0017 32.8 37.5 116 225-342 255-374 (644)
409 smart00299 CLH Clathrin heavy 79.7 28 0.00061 27.5 11.9 17 75-91 21-37 (140)
410 PF13041 PPR_2: PPR repeat fam 79.4 8.9 0.00019 23.6 5.4 30 98-127 3-32 (50)
411 PF11817 Foie-gras_1: Foie gra 79.3 45 0.00098 29.6 14.6 26 101-126 13-38 (247)
412 KOG2114|consensus 78.8 89 0.0019 32.7 25.7 250 67-349 340-596 (933)
413 PF13041 PPR_2: PPR repeat fam 78.3 11 0.00024 23.2 5.6 28 138-166 5-32 (50)
414 KOG0276|consensus 76.8 25 0.00053 35.0 9.6 136 172-343 615-750 (794)
415 TIGR02710 CRISPR-associated pr 76.5 52 0.0011 31.2 11.5 58 104-162 136-196 (380)
416 PF04348 LppC: LppC putative l 76.2 0.84 1.8E-05 45.6 0.0 107 56-166 19-127 (536)
417 cd02682 MIT_AAA_Arch MIT: doma 75.3 12 0.00026 25.7 5.3 28 499-526 29-56 (75)
418 KOG0546|consensus 74.9 7.8 0.00017 35.5 5.6 74 138-212 277-350 (372)
419 PF12739 TRAPPC-Trs85: ER-Golg 74.8 87 0.0019 30.5 15.0 51 62-112 209-262 (414)
420 KOG4151|consensus 74.5 15 0.00033 37.5 8.0 110 65-179 57-169 (748)
421 PF11846 DUF3366: Domain of un 74.5 10 0.00022 32.1 6.2 53 463-516 125-177 (193)
422 TIGR02710 CRISPR-associated pr 74.1 82 0.0018 29.9 13.4 58 66-123 135-196 (380)
423 PF01535 PPR: PPR repeat; Int 73.7 6.3 0.00014 20.9 3.2 25 248-272 3-27 (31)
424 KOG4014|consensus 73.5 51 0.0011 27.3 15.5 173 152-344 50-234 (248)
425 cd02680 MIT_calpain7_2 MIT: do 73.4 4.7 0.0001 27.7 3.0 33 465-512 3-35 (75)
426 PF11817 Foie-gras_1: Foie gra 73.3 67 0.0015 28.5 16.1 77 262-339 155-243 (247)
427 KOG0276|consensus 73.2 45 0.00097 33.3 10.3 100 70-199 595-694 (794)
428 COG4941 Predicted RNA polymera 73.0 78 0.0017 29.2 14.9 35 247-281 367-401 (415)
429 PF12739 TRAPPC-Trs85: ER-Golg 72.4 99 0.0021 30.1 15.1 93 245-345 300-401 (414)
430 KOG4014|consensus 72.4 55 0.0012 27.1 15.8 158 168-344 31-198 (248)
431 PF10952 DUF2753: Protein of u 71.3 39 0.00084 25.8 7.4 75 63-137 3-93 (140)
432 PF01239 PPTA: Protein prenylt 70.9 12 0.00025 20.3 3.8 28 502-529 2-29 (31)
433 PF07219 HemY_N: HemY protein 70.0 26 0.00056 26.3 6.7 51 60-113 58-108 (108)
434 KOG4151|consensus 68.0 38 0.00083 34.9 9.1 103 105-207 60-163 (748)
435 KOG4279|consensus 67.6 85 0.0018 32.4 11.1 181 138-323 203-409 (1226)
436 cd02683 MIT_1 MIT: domain cont 67.3 11 0.00023 26.2 3.8 29 60-88 5-33 (77)
437 PF06957 COPI_C: Coatomer (COP 67.3 47 0.001 32.0 9.1 33 60-92 203-235 (422)
438 PF11846 DUF3366: Domain of un 66.3 20 0.00044 30.4 6.2 50 297-347 128-177 (193)
439 TIGR00756 PPR pentatricopeptid 66.0 15 0.00032 20.0 3.8 26 248-273 3-28 (35)
440 PF11207 DUF2989: Protein of u 65.8 83 0.0018 26.7 16.3 76 258-335 119-199 (203)
441 PF03745 DUF309: Domain of unk 65.3 36 0.00079 22.4 7.2 56 65-120 3-61 (62)
442 KOG1497|consensus 64.8 1.1E+02 0.0025 27.9 11.7 99 62-162 104-209 (399)
443 smart00299 CLH Clathrin heavy 64.8 67 0.0015 25.3 13.0 49 145-195 16-64 (140)
444 cd02682 MIT_AAA_Arch MIT: doma 64.6 12 0.00026 25.7 3.5 27 61-87 6-32 (75)
445 smart00671 SEL1 Sel1-like repe 63.3 15 0.00032 20.4 3.4 29 484-512 2-34 (36)
446 PF04090 RNA_pol_I_TF: RNA pol 60.8 1E+02 0.0023 26.1 9.5 33 465-497 158-192 (199)
447 KOG4521|consensus 59.9 2.8E+02 0.006 30.7 16.6 31 97-127 919-949 (1480)
448 PF13812 PPR_3: Pentatricopept 59.8 26 0.00055 19.0 4.0 26 248-273 4-29 (34)
449 KOG4521|consensus 58.9 2.9E+02 0.0062 30.6 13.6 169 171-345 920-1134(1480)
450 PF08238 Sel1: Sel1 repeat; I 58.9 19 0.00042 20.4 3.5 30 483-512 1-37 (39)
451 cd02681 MIT_calpain7_1 MIT: do 58.2 17 0.00037 25.1 3.5 29 61-89 6-34 (76)
452 cd02679 MIT_spastin MIT: domai 58.0 19 0.00041 25.1 3.6 14 185-198 22-35 (79)
453 PF04212 MIT: MIT (microtubule 57.9 20 0.00043 24.1 3.8 26 63-88 7-32 (69)
454 PF04212 MIT: MIT (microtubule 57.6 42 0.00091 22.5 5.4 22 490-511 12-33 (69)
455 COG3014 Uncharacterized protei 56.4 1.7E+02 0.0037 27.2 12.8 23 102-124 62-84 (449)
456 KOG2561|consensus 56.0 2E+02 0.0043 27.8 11.8 27 247-273 269-295 (568)
457 KOG4322|consensus 55.2 2E+02 0.0044 27.7 14.4 106 59-165 271-381 (482)
458 KOG4322|consensus 54.0 2.1E+02 0.0046 27.5 11.3 102 97-199 272-381 (482)
459 cd02677 MIT_SNX15 MIT: domain 53.6 13 0.00027 25.7 2.3 32 465-511 3-34 (75)
460 PF02064 MAS20: MAS20 protein 53.4 36 0.00078 26.1 4.8 38 318-355 67-104 (121)
461 PF10952 DUF2753: Protein of u 53.2 81 0.0018 24.2 6.4 61 101-162 4-75 (140)
462 PF12753 Nro1: Nuclear pore co 52.2 20 0.00043 33.7 3.9 47 464-512 333-391 (404)
463 TIGR03362 VI_chp_7 type VI sec 52.1 1E+02 0.0022 28.4 8.4 70 57-126 209-278 (301)
464 PF09205 DUF1955: Domain of un 52.0 1.1E+02 0.0025 23.9 12.9 126 65-200 6-149 (161)
465 KOG2561|consensus 51.8 2.3E+02 0.005 27.3 11.3 49 63-114 165-224 (568)
466 KOG0889|consensus 51.7 6.2E+02 0.013 32.3 23.8 48 482-529 2811-2858(3550)
467 PHA02537 M terminase endonucle 51.1 58 0.0013 28.4 6.3 23 495-517 190-212 (230)
468 cd02681 MIT_calpain7_1 MIT: do 50.5 27 0.00059 24.1 3.5 19 494-512 17-35 (76)
469 KOG0686|consensus 49.9 2.4E+02 0.0052 27.0 17.3 159 136-307 150-331 (466)
470 cd02680 MIT_calpain7_2 MIT: do 49.9 30 0.00065 23.8 3.5 28 62-89 7-34 (75)
471 PF04348 LppC: LppC putative l 49.2 5.6 0.00012 39.9 0.0 102 97-200 23-127 (536)
472 KOG4279|consensus 48.7 1.1E+02 0.0024 31.7 8.4 70 74-150 256-334 (1226)
473 PF02184 HAT: HAT (Half-A-TPR) 48.1 32 0.00069 19.0 2.8 26 76-105 2-27 (32)
474 KOG0889|consensus 47.8 7.1E+02 0.015 31.9 19.9 143 98-241 2736-2884(3550)
475 PF06957 COPI_C: Coatomer (COP 47.2 1.8E+02 0.004 28.1 9.5 22 292-313 312-333 (422)
476 smart00101 14_3_3 14-3-3 homol 47.1 2.1E+02 0.0045 25.4 16.9 24 142-166 7-30 (244)
477 PRK12798 chemotaxis protein; R 47.0 2.7E+02 0.0059 26.8 22.7 193 142-342 118-323 (421)
478 KOG0687|consensus 46.4 2.4E+02 0.0053 26.1 11.7 120 62-182 105-226 (393)
479 cd00280 TRFH Telomeric Repeat 46.2 1.8E+02 0.0038 24.4 8.7 29 105-134 118-146 (200)
480 PF15297 CKAP2_C: Cytoskeleton 46.0 2.1E+02 0.0047 26.7 9.2 67 64-130 105-172 (353)
481 cd02678 MIT_VPS4 MIT: domain c 45.1 38 0.00083 23.3 3.6 28 61-88 6-33 (75)
482 PF04090 RNA_pol_I_TF: RNA pol 45.1 1.9E+02 0.0042 24.6 11.9 33 330-362 158-192 (199)
483 KOG2063|consensus 44.6 4.4E+02 0.0096 28.5 18.8 121 62-183 505-638 (877)
484 PF13934 ELYS: Nuclear pore co 44.0 2.2E+02 0.0048 24.9 9.7 117 65-197 45-166 (226)
485 PF02064 MAS20: MAS20 protein 44.0 79 0.0017 24.3 5.4 28 66-93 68-95 (121)
486 cd02683 MIT_1 MIT: domain cont 43.0 1E+02 0.0022 21.4 5.4 14 466-479 4-17 (77)
487 PF07219 HemY_N: HemY protein 42.4 97 0.0021 23.2 5.7 47 485-531 61-107 (108)
488 cd02684 MIT_2 MIT: domain cont 42.0 49 0.0011 22.8 3.7 28 62-89 7-34 (75)
489 COG5187 RPN7 26S proteasome re 42.0 2.7E+02 0.0058 25.3 16.4 101 171-277 115-224 (412)
490 KOG4563|consensus 41.8 51 0.0011 30.6 4.7 64 57-120 37-105 (400)
491 cd02677 MIT_SNX15 MIT: domain 41.8 53 0.0011 22.6 3.8 27 62-88 7-33 (75)
492 PRK15490 Vi polysaccharide bio 41.7 2.6E+02 0.0057 28.4 9.9 78 74-161 21-98 (578)
493 PRK15490 Vi polysaccharide bio 41.4 2.5E+02 0.0053 28.6 9.7 78 224-304 21-98 (578)
494 KOG1497|consensus 40.8 3E+02 0.0064 25.4 16.5 99 136-238 103-211 (399)
495 cd02679 MIT_spastin MIT: domai 40.6 41 0.00088 23.5 3.1 34 463-511 3-36 (79)
496 smart00101 14_3_3 14-3-3 homol 40.4 2.6E+02 0.0057 24.8 15.3 58 249-306 5-65 (244)
497 smart00745 MIT Microtubule Int 40.2 47 0.001 22.8 3.6 25 63-87 10-34 (77)
498 COG5187 RPN7 26S proteasome re 40.1 2.9E+02 0.0062 25.1 16.7 28 136-164 115-142 (412)
499 PF08311 Mad3_BUB1_I: Mad3/BUB 40.1 1.8E+02 0.0038 22.6 12.7 117 77-198 1-126 (126)
500 KOG1920|consensus 39.7 5.8E+02 0.013 28.5 18.5 261 151-536 771-1051(1265)
No 1
>KOG4626|consensus
Probab=100.00 E-value=3.3e-46 Score=338.37 Aligned_cols=387 Identities=17% Similarity=0.173 Sum_probs=347.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-.+.+-..|..+-..|++++|+..|+.+++..|+ ..++|.++|.++...|+.+.|..+|..+++++|+... +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~---fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c----a~ 187 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK---FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC----AR 187 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch---hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh----hh
Confidence 4677788999999999999999999999999999 9999999999999999999999999999999998744 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|..+...| +..+|..+|.++++..|..+.+|.++|.++..+|+...|+..|+++++++|+..++++++|.++-..
T Consensus 188 s~lgnLlka~G-rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~- 265 (966)
T KOG4626|consen 188 SDLGNLLKAEG-RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA- 265 (966)
T ss_pred cchhHHHHhhc-ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-
Confidence 55999999999 9999999999999999999999999999999999999999999999999999999999999777777
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
+.++.|+.+|.+++...|++..++.++|.+|..+|..+-|+..|+++++..|+.+.++.++|.. +...|+..+|
T Consensus 266 -----~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA-Lkd~G~V~ea 339 (966)
T KOG4626|consen 266 -----RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA-LKDKGSVTEA 339 (966)
T ss_pred -----hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH-HHhccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 5559999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR 379 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (551)
..+|.+++...|+.+.+..+||.++..+|.+++|...|.++++..|........++....
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k-------------------- 399 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK-------------------- 399 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999987776555443300
Q ss_pred hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-
Q psy12713 380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ- 458 (551)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 458 (551)
..+.+.+++ ..+..++.+.+.+...+...|.
T Consensus 400 -----------------------------------qqgnl~~Ai-------------~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 400 -----------------------------------QQGNLDDAI-------------MCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred -----------------------------------hcccHHHHH-------------HHHHHHHhcCchHHHHHHhcchH
Confidence 011111111 1222344455666666666666
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
+...|+.+.|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.+++++|++++++.++..++.-
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999988765
No 2
>KOG4626|consensus
Probab=100.00 E-value=4.7e-45 Score=330.88 Aligned_cols=399 Identities=21% Similarity=0.251 Sum_probs=352.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-------------------------------hhHHHHHHHHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-------------------------------HTKALARLLRATVYIF 110 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-------------------------------~~~~~~~~~la~~~~~ 110 (551)
...+.+|...++.|+|.+|.+.+..+...+|.. +...+++.++|.++..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 447889999999999999999998887766643 3467889999999999
Q ss_pred hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH
Q psy12713 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190 (551)
Q Consensus 111 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 190 (551)
.|+++.|+..|+.++++.|+. +.+|.++|.++...| +.+.|..+|..+++++|+...+...+|.++..+|+.++|
T Consensus 129 rg~~~~al~~y~~aiel~p~f----ida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKF----IDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred hchHHHHHHHHHHHHhcCchh----hHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchh
Confidence 999999999999999999988 668888999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
..+|.++++..|....+|.++|.++... |+...|+..|+++++++|...++|+++|.+|...+.++.|+.+|.+
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~------Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQ------GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhc------chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999999999999666655 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++...|++..++.++|.+|+. +|..+-|+..|+++++..|+.+.++.++|.++...|+..+|+.+|.+++.+.|++.+.
T Consensus 278 Al~lrpn~A~a~gNla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred HHhcCCcchhhccceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999888 9999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430 (551)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (551)
...++.........+
T Consensus 357 m~NLgni~~E~~~~e----------------------------------------------------------------- 371 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIE----------------------------------------------------------------- 371 (966)
T ss_pred HHHHHHHHHHhccch-----------------------------------------------------------------
Confidence 666554421111111
Q ss_pred CccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHH
Q psy12713 431 DYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 509 (551)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 509 (551)
.+..-+..+++..+.+....+..+. +.+.|++++|+.+|++++.+.|..++++.++|..|..+|+...|+.+|.+|
T Consensus 372 ---~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 372 ---EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred ---HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 1111112233333445555555555 888999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713 510 IALNPNFHVARAQRHFVWTSTLAELMAFSDE 540 (551)
Q Consensus 510 l~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~ 540 (551)
+.++|...+++.+||.+|...|+-.+|+...
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 9999999999999999999999998888643
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6e-36 Score=301.89 Aligned_cols=382 Identities=20% Similarity=0.216 Sum_probs=307.5
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
+..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..++++++++|++ ..+++
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~----~~a~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY----SKALN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC----HHHHH
Confidence 456788999999999999999999999999995 5689999999999999999999999999999988 45777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------------CChhHHHHHHHH----------
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDP------------------------------NVADSYYQRGQI---------- 180 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~------------------------------~~~~~~~~la~~---------- 180 (551)
.+|.++..+| ++++|+..+..+...++ .+...+..++..
T Consensus 199 ~~a~a~~~lg-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 199 RRANAYDGLG-KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch
Confidence 8999999999 99999987765543322 211111111111
Q ss_pred -----------------------H---HHhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 181 -----------------------Y---CLFGQYEEALRNLDKTIAL---NPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 181 -----------------------~---~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
. ...+.+++|+..|++++.. .|....++..+|.++... |++++|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~------g~~~eA~ 351 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK------GKHLEAL 351 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc------CCHHHHH
Confidence 1 1235799999999999976 477778889999888777 9999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
..+++++..+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.+++. .|++++|+.+|++++..+|
T Consensus 352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999999999999999999887 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI 391 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 391 (551)
++..++..+|.++..+|++++|+..|++++...|+++.++..++...... +....++
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-----------------------g~~~~A~ 487 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-----------------------NKFDEAI 487 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------------------cCHHHHH
Confidence 99999999999999999999999999999999999988776665441111 1122222
Q ss_pred HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHH
Q psy12713 392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFA 470 (551)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~ 470 (551)
..+.+... ..|....... ....+...+.. +...|++++|+.
T Consensus 488 ~~~~~Al~----------------------------------l~p~~~~~~~----~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 488 EKFDTAIE----------------------------------LEKETKPMYM----NVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHh----------------------------------cCCccccccc----cHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222111 0111000000 00011122222 233589999999
Q ss_pred hhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHH
Q psy12713 471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519 (551)
Q Consensus 471 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 519 (551)
.++++++++|++..++..+|.++..+|++++|+.+|++++++.+.....
T Consensus 530 ~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999999999999999999976653
No 4
>KOG0547|consensus
Probab=100.00 E-value=2.6e-34 Score=254.36 Aligned_cols=350 Identities=35% Similarity=0.525 Sum_probs=313.5
Q ss_pred chhHHHHHHHHHHh-hCCCCCCcHHHHHHHHhhCCCCCCCCCCCCCCcccccCCCCCCcchHHHHHHHHHHHhhh---cH
Q psy12713 2 FMDRGAQHAKEEIS-KRSFFKPSKQFIKTYLKSFPNDPILQPDGLSNGVELTNGDTNESHELDLLSKAKRAFEHE---DY 77 (551)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~g---~~ 77 (551)
+|.++...+++.++ ++++.+||++|+.+||++|..++ .+....+ .+..++....+...+..+ .|
T Consensus 228 Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-~~~~~~~-----------~~ksDa~l~~~l~~l~~~~~e~Y 295 (606)
T KOG0547|consen 228 LKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-KPLFDNK-----------SDKSDAALAEALEALEKGLEEGY 295 (606)
T ss_pred HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc-cccccCC-----------CccchhhHHHHHHHHHhhCchhH
Confidence 67888899999999 79999999999999999999998 3332211 223455556666666666 78
Q ss_pred HHHHHHHHHHhhcCCCc----------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713 78 LTAIRHCTEEIESTSSN----------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147 (551)
Q Consensus 78 ~~A~~~~~~~l~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 147 (551)
..|...+.+.......+ .+.+.++...|..++-.|+.-.|...|+.+++++|.++.. |+.+|.+|.
T Consensus 296 ~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l----yI~~a~~y~ 371 (606)
T KOG0547|consen 296 LKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL----YIKRAAAYA 371 (606)
T ss_pred HHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----HHHHHHHHh
Confidence 88888887765432111 3348899999999999999999999999999999988654 566999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
..+ +..+....|.++..++|.++++|+.+|++++-.+++++|+..|++++.++|.+..++.+++.+.|+. +++
T Consensus 372 d~~-~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~------~k~ 444 (606)
T KOG0547|consen 372 DEN-QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ------HKI 444 (606)
T ss_pred hhh-ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH------HHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
+++...|+.+.+..|..++++...|.++..++++++|++.|.+++++.|. ++..+.+.|.+.++..+++..|+.
T Consensus 445 ~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~ 524 (606)
T KOG0547|consen 445 AESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN 524 (606)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 777888888888888899999999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (551)
+++++++++|.+..++..||.+..++|+.++|+++|+++..+..+..+..+.+..++...++..+.+.++...
T Consensus 525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAAraq~~vtkK~~~~~ 597 (606)
T KOG0547|consen 525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAARAQIAVTKKYGLTL 597 (606)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHhcccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877653
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.4e-34 Score=305.85 Aligned_cols=429 Identities=16% Similarity=0.143 Sum_probs=244.9
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
+..+...|..+...|++++|+..|+++++.+|. +..++..+|.++...|++++|+..+++++...|.+. .++.
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 537 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL----RAIL 537 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHH
Confidence 344555555555555555555555555555555 555555555555555555555555555555555442 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV 220 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 220 (551)
.++.++...| ++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.+...+..++.++...
T Consensus 538 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 614 (899)
T TIGR02917 538 ALAGLYLRTG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-- 614 (899)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--
Confidence 4555555555 5555555555555555555555555555555555555555555555555555555555555444444
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
|++++|+..++++++..|.++.++..+|.++...|++++|+..|++++..+|++...+..++.++.. .|++++|+
T Consensus 615 ----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 689 (899)
T TIGR02917 615 ----GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-AKRTESAK 689 (899)
T ss_pred ----CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555444 55555555
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcch
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRS 380 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (551)
..++.+.+..|.++..+..+|.++...|++++|+..|++++...|++... ..++.. ..
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~--~~------------------- 747 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRA--LL------------------- 747 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH-HHHHHH--HH-------------------
Confidence 55555555555555555556666666666666666666665555554211 111100 00
Q ss_pred hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-h
Q psy12713 381 QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-K 459 (551)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 459 (551)
..+....+...+.+...... .+...+......+...+....+.......+...+.....+...+. +
T Consensus 748 --~~g~~~~A~~~~~~~l~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 748 --ASGNTAEAVKTLEAWLKTHP-----------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred --HCCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00111112111111100000 000111111222222222222222223333333333333333333 6
Q ss_pred hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhh
Q psy12713 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSD 539 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~ 539 (551)
...|+ .+|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|+..+|..-
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66788 88999999999999999999999999999999999999999999999999999999999999999998888754
Q ss_pred h
Q psy12713 540 E 540 (551)
Q Consensus 540 ~ 540 (551)
.
T Consensus 894 ~ 894 (899)
T TIGR02917 894 L 894 (899)
T ss_pred H
Confidence 3
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-33 Score=299.72 Aligned_cols=456 Identities=15% Similarity=0.142 Sum_probs=251.5
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH---
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK--- 135 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--- 135 (551)
.++..+...|..+...|++++|+..|++++...|. +..++..+|.++...|++++|+..+++++...|+.....
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 35677888899999999999999999999999888 788888899999999999999999988888877553321
Q ss_pred ---------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713 136 ---------------------------VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188 (551)
Q Consensus 136 ---------------------------~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 188 (551)
...+..+|.++...| ++++|+..|+++++.+|++..++..+|.++...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 123344555555555 5555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 268 (551)
+|+..+++++...|.+..++..++.++... |++++|+..+++++..+|.+...+..++.++...|++++|+..+
T Consensus 517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 517 DAIQRFEKVLTIDPKNLRAILALAGLYLRT------GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555555555555555444433 55566666666665555655555566666666666666666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 269 NRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
++++...|.++..+..+|.++.. .|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLA-AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 66666666666666666666554 66666666666666666666666666666666666666666666666666666655
Q ss_pred HHHHHHhHHHHHHHHH----HHHHHhccccCCCcch-------hhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcc
Q psy12713 349 ELSHIYSLRDAAIAQM----KVCERYNIKKKVSPRS-------QNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417 (551)
Q Consensus 349 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (551)
..+..+.......... ...+.+.......... ....+....++..+......... ..
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~ 737 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS------------SQ 737 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------ch
Confidence 5443332221111000 0000000000000000 00011112222222211110000 00
Q ss_pred hhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh
Q psy12713 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496 (551)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 496 (551)
.+......+...+....+.......+...+.....+...+. +...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 01111111111111111111112222222222222222222 55566666666666666666666666666666666666
Q ss_pred cCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 497 GQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 497 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
|+ .+|+..+++++++.|+++..+..+|.++...|+..+|..
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 66 666666666666666666666666666666666655554
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.5e-33 Score=300.65 Aligned_cols=398 Identities=12% Similarity=0.049 Sum_probs=288.9
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH----------
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK---------- 135 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 135 (551)
.+|..++..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..|+++++.+|++....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 4588999999999999999999999998 899999999999999999999999999999999875421
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
......+|.++...| ++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 351 ~~~~~~~g~~~~~~g-~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKAN-NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 123345688899999 9999999999999999999999999999999999999999999999999999988887776554
Q ss_pred HHh------------------------------------hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713 216 HKM------------------------------------IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259 (551)
Q Consensus 216 ~~~------------------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 259 (551)
... ..+...|++++|+..|+++++.+|+++.+++.+|.++...|
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 210 12234577788888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHhCC
Q psy12713 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----------MFAYETLGTIEVQRGR 329 (551)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~ 329 (551)
++++|+..++++++.+|+++..++.++..+.. .+++++|+..++++.....+. ......++..+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~-~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSG-SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 88888888888888888887777777765443 677777777666532211000 0112234444455555
Q ss_pred HHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCC
Q psy12713 330 LEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGG 409 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (551)
+++|+..++ ..|.++.....++... . ..+....++..+.+.
T Consensus 589 ~~eA~~~l~----~~p~~~~~~~~La~~~--~---------------------~~g~~~~A~~~y~~a------------ 629 (1157)
T PRK11447 589 EAEAEALLR----QQPPSTRIDLTLADWA--Q---------------------QRGDYAAARAAYQRV------------ 629 (1157)
T ss_pred HHHHHHHHH----hCCCCchHHHHHHHHH--H---------------------HcCCHHHHHHHHHHH------------
Confidence 555555444 2444444333222110 0 001111111111110
Q ss_pred CccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhh
Q psy12713 410 KTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQR 489 (551)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 489 (551)
+...|.++.. ....+..+...|++++|+..++++++..|+++.++..+
T Consensus 630 ----------------------l~~~P~~~~a----------~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 630 ----------------------LTREPGNADA----------RLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred ----------------------HHhCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 0011111111 11222235667999999999999999999999999999
Q ss_pred hhHHHHhcCHHHHHHHHHHHhhcCCchH------HHHHHHHHHHHHhhhhhhhhhh
Q psy12713 490 GQIYCLFGQYEEALRNLDKTIALNPNFH------VARAQRHFVWTSTLAELMAFSD 539 (551)
Q Consensus 490 g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~~ 539 (551)
|.++...|++++|+..|++++...|+++ .++..+|.++...|+..+|+..
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999877654 4566778889888888877765
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.6e-33 Score=278.81 Aligned_cols=346 Identities=11% Similarity=0.070 Sum_probs=311.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+......-+..++..|++++|...++.++...|. ++.+++.+|.+....|++++|+..+++++..+|+++. ++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~ 113 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DV 113 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HH
Confidence 4555667788899999999999999999999999 9999999999999999999999999999999999955 56
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++...| ++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|++...+...+ .+...
T Consensus 114 ~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~- 190 (656)
T PRK15174 114 LLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNK- 190 (656)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHc-
Confidence 66999999999 9999999999999999999999999999999999999999999999999999988776543 24444
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
|++++|+..+++++..+|. .......++.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++
T Consensus 191 -----g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~e 264 (656)
T PRK15174 191 -----SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSRE 264 (656)
T ss_pred -----CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchh
Confidence 9999999999999998763 344556678899999999999999999999999999999999999877 999986
Q ss_pred ----HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q psy12713 299 ----AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKK 374 (551)
Q Consensus 299 ----A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (551)
|+..++++++.+|+++.++..+|.++...|++++|+..+++++.+.|+++.+...++.
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~------------------ 326 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR------------------ 326 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------------
Confidence 8999999999999999999999999999999999999999999999998775433321
Q ss_pred CCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchh
Q psy12713 375 KVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLEN 454 (551)
Q Consensus 375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (551)
T Consensus 327 -------------------------------------------------------------------------------- 326 (656)
T PRK15174 327 -------------------------------------------------------------------------------- 326 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHH
Q psy12713 455 ESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 522 (551)
Q Consensus 455 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 522 (551)
.+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++....+.
T Consensus 327 ---~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 327 ---ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred ---HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 14455899999999999999999998888888999999999999999999999999987654443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-32 Score=278.04 Aligned_cols=368 Identities=18% Similarity=0.179 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+..+..+|..++..|++++|+..|++++...|+ + ..+.++|.+|..+| ++++|+..++++++++|++..+++.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~ 199 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3556789999999999999999999999999985 2 35677999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH------------------------------HHHHHHHHHHH---------
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHV------------------------------ARAQRHFVVHK--------- 217 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~------------------------------~~~~~~~~~~~--------- 217 (551)
+|.+|..+|++++|+..+..+...++.... .+..++..+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 999999999999999988776655432211 11111111100
Q ss_pred -----------------h----hcCCChhHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 218 -----------------M----IVPGDRERVEQSLKEFRNFVDTH---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 218 -----------------~----~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
. .-....+++++|+..|++++... |....++..+|.++...|++++|+..|+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 00012368999999999999864 77788999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 274 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
.+|++...+..+|.++.. .|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|++...+..
T Consensus 360 l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred cCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 999999999999999877 9999999999999999999999999999999999999999999999999999998877655
Q ss_pred HhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCcc
Q psy12713 354 YSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYE 433 (551)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (551)
++..... .+....++..+.+.. .
T Consensus 439 la~~~~~-----------------------~g~~~eA~~~~~~al----------------------------------~ 461 (615)
T TIGR00990 439 LGVTQYK-----------------------EGSIASSMATFRRCK----------------------------------K 461 (615)
T ss_pred HHHHHHH-----------------------CCCHHHHHHHHHHHH----------------------------------H
Confidence 4433110 011122222222110 0
Q ss_pred ccCCCcchhhhhhhhhccchhhhc-hhhhhcChhHHHHhhHHhhccCCCchHHH------hhhhhHH-HHhcCHHHHHHH
Q psy12713 434 IIPGDPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDEAEKVDPNVADSY------YQRGQIY-CLFGQYEEALRN 505 (551)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~-~~~g~~~~A~~~ 505 (551)
..| .....+...+ .+...|++++|+..|+++++++|++...+ ...+.++ ...|++++|+..
T Consensus 462 ~~P-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 462 NFP-----------EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred hCC-----------CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111 1112222233 36778999999999999999998754332 3333334 447999999999
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhh
Q psy12713 506 LDKTIALNPNFHVARAQRHFVWTSTLAELMAFSD 539 (551)
Q Consensus 506 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~ 539 (551)
+++++.++|++..++..+|.++...|+..+|+..
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999999999999999999888753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.3e-32 Score=290.56 Aligned_cols=426 Identities=15% Similarity=0.148 Sum_probs=321.5
Q ss_pred hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC---------------------
Q psy12713 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD--------------------- 131 (551)
Q Consensus 73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------- 131 (551)
..|++++|+..++++++.+|. ++.++..+|.++...|++++|+..+++++...+..
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P~---~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~ 235 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYPG---NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASV 235 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhH
Confidence 458999999999999999998 89999999999999999999999999986643211
Q ss_pred -------------chhH-HH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713 132 -------------PKIK-VN---------------AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182 (551)
Q Consensus 132 -------------~~~~-~~---------------~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 182 (551)
.... .. ....+|.++...| ++++|+..|+++++.+|+++.++..+|.++.
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g-~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG-QGGKAIPELQQAVRANPKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1000 00 0013477888899 9999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHH--H------------HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH
Q psy12713 183 LFGQYEEALRNLDKTIALNPNFHVA--R------------AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC 248 (551)
Q Consensus 183 ~~~~~~~A~~~~~~~l~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 248 (551)
..|++++|+..|+++++.+|++... + ...+.++ ...|++++|+..|++++..+|+++.++
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~------~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA------LKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999976532 1 1223333 345999999999999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---------------------------------------
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM--------------------------------------- 289 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------------- 289 (551)
..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999987766555442
Q ss_pred ---HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHH-
Q psy12713 290 ---LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMK- 365 (551)
Q Consensus 290 ---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 365 (551)
.. .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+++.....++..........
T Consensus 469 ~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 23 7999999999999999999999999999999999999999999999999999998876554433211000000
Q ss_pred HHHHhccccC--CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713 366 VCERYNIKKK--VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI 443 (551)
Q Consensus 366 ~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (551)
....+...+. .......+...... ...+.. .......+++.++...+. ..|.++..
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~-~~~l~~-------------a~~l~~~G~~~eA~~~l~------~~p~~~~~-- 605 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQS-DQVLET-------------ANRLRDSGKEAEAEALLR------QQPPSTRI-- 605 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhh-hHHHHH-------------HHHHHHCCCHHHHHHHHH------hCCCCchH--
Confidence 0000100000 00000000000000 000000 001112223333333222 12222221
Q ss_pred hhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 523 (551)
....+..+...|++++|+..|+++++.+|++++++..+|.++...|++++|++.++++++..|+++.++..+
T Consensus 606 --------~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 606 --------DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 123344477889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhh
Q psy12713 524 HFVWTSTLAELMAFSD 539 (551)
Q Consensus 524 ~~~~~~~~~~~~a~~~ 539 (551)
|.++...|+..+|...
T Consensus 678 a~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 678 ALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHhCCCHHHHHHH
Confidence 9999999988877753
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=8.6e-31 Score=263.11 Aligned_cols=330 Identities=12% Similarity=0.021 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
+.......+..+...|++++|+..++.++...|+++. ++..+|.+....| ++++|+..+++++..+|+++.++..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~ 115 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLL 115 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHH
Confidence 4445666778889999999999999999999999854 5666999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+|.++...|++++|+..+++++.++|++..++..++.++... |++++|+..+++++...|+++.++..++ .+.
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~ 188 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRGDMIATCL-SFL 188 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence 999999999999999999999999999999999999777777 9999999999999999999998887664 488
Q ss_pred hccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHH---
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEE--- 332 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 332 (551)
..|++++|+..+++++..+|.. ......++.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA-VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 9999999999999999987643 4444556777666 9999999999999999999999999999999999999986
Q ss_pred -HHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCc
Q psy12713 333 -AVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKT 411 (551)
Q Consensus 333 -A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (551)
|+..|++++..+|++..++..++.
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~------------------------------------------------------- 292 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYAD------------------------------------------------------- 292 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHH-------------------------------------------------------
Confidence 899999999999998765443321
Q ss_pred cccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhh
Q psy12713 412 VVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 491 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 491 (551)
.+...|++++|+..++++++.+|+++.++..+|.
T Consensus 293 ----------------------------------------------~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 293 ----------------------------------------------ALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred ----------------------------------------------HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2455689999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhhhh
Q psy12713 492 IYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFSDE 540 (551)
Q Consensus 492 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~~~ 540 (551)
++...|++++|+..|++++..+|++..++..+|.++...|+..+|....
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999988888899999999888877643
No 12
>KOG2002|consensus
Probab=100.00 E-value=6.5e-31 Score=251.62 Aligned_cols=458 Identities=16% Similarity=0.140 Sum_probs=297.5
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc----
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP---- 132 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 132 (551)
..+++..++.+|...+..|+|..|+.+|+.++.++|. ..++....+|.|++++|+.+.|+..|+++++++|.+.
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~--~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA--CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc--cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence 3458999999999999999999999999999999997 4667888899999999999999999999999887432
Q ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHH
Q psy12713 133 ------------------------------------------------------------------KIKVNAHIKRAVVH 146 (551)
Q Consensus 133 ------------------------------------------------------------------~~~~~~~~~la~~~ 146 (551)
.....+++++|.+|
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11234678889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
..+| ++++|..+|.++++.+|++ .-.++.+|++++..|+++.|+.+|+++++..|++......+|.+|.... ....
T Consensus 318 Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~--~~~~ 394 (1018)
T KOG2002|consen 318 HAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA--KKQE 394 (1018)
T ss_pred Hhhc-cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh--hhhH
Confidence 9999 9999999999999998888 7788899999999999999999999999999999999888887765430 2233
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
..+.|..+..++++..|.+.++|..++.++....-+. ++..|..++.. .+-.++.+.++|..++. .|++++|.
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFR-LGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-hcChHHHH
Confidence 6688888888888888888888888887776654443 37777777643 23346677788888777 88888888
Q ss_pred HHHHHHHhc-----CcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh-HH----HHHHHHHH
Q psy12713 301 KLIEKAISI-----DKSC-----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS-LR----DAAIAQMK 365 (551)
Q Consensus 301 ~~~~~~~~~-----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~----~~~~~~~~ 365 (551)
..|.+++.. +++. ....+++|.++...++++.|.+.|..++...|+..+...-++ .. ....+...
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHH
Confidence 888888765 2222 335778888888888888888888888888888776554443 11 00111111
Q ss_pred HHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhh
Q psy12713 366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEE 445 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (551)
+...+ ......+....+.+...........+..... ........ ..++-..+.+
T Consensus 553 lk~~l-~~d~~np~arsl~G~~~l~k~~~~~a~k~f~------------------~i~~~~~~-------~~D~YsliaL 606 (1018)
T KOG2002|consen 553 LKDAL-NIDSSNPNARSLLGNLHLKKSEWKPAKKKFE------------------TILKKTST-------KTDAYSLIAL 606 (1018)
T ss_pred HHHHH-hcccCCcHHHHHHHHHHHhhhhhcccccHHH------------------HHHhhhcc-------CCchhHHHHh
Confidence 11111 1122222222333333222222222111000 00000000 0000011111
Q ss_pred hhhhcc-chhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713 446 SEKYGN-LENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523 (551)
Q Consensus 446 ~~~~~~-~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 523 (551)
+..+.. +++.... -...+.+++|+..|.++++.+|.|..+-..+|.|+...|++.+|+..|.++.+--.++.++|.++
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 110000 0000000 11234566666666666666666666666666666666666666666666666555666666666
Q ss_pred HHHHHHhhhhhhhhhhhcccchhh
Q psy12713 524 HFVWTSTLAELMAFSDEFMIPKIT 547 (551)
Q Consensus 524 ~~~~~~~~~~~~a~~~~~~~~~~~ 547 (551)
|.+|..+|++..|+.-.-.+++..
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666665444444433
No 13
>KOG0547|consensus
Probab=100.00 E-value=6.4e-31 Score=233.00 Aligned_cols=348 Identities=23% Similarity=0.284 Sum_probs=217.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-+..+-.+|..+++.|+|++|+++|..+|+..|+ .+..+.+++-||...|+|++.++...++++++|+. +.++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y----~KAl 186 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY----VKAL 186 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH----HHHH
Confidence 4566778899999999999999999999999998 68899999999999999999999999999999987 6688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH------------------HHhc--------------CCCC-----------------
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDE------------------AEKV--------------DPNV----------------- 170 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~------------------~~~~--------------~~~~----------------- 170 (551)
+.++..+..+| ++++|+....- .++. .|.-
T Consensus 187 ~RRA~A~E~lg-~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 187 LRRASAHEQLG-KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred HHHHHHHHhhc-cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88999999999 88888744321 1110 0100
Q ss_pred ------------------------------------------------------------hhHHHHHHHHHHHhCCHHHH
Q psy12713 171 ------------------------------------------------------------ADSYYQRGQIYCLFGQYEEA 190 (551)
Q Consensus 171 ------------------------------------------------------------~~~~~~la~~~~~~~~~~~A 190 (551)
..++...|..++-.|++-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 11223333444444444444
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
...++.++.++|.+...++.++.++... ++.++....|.++..++|.++++|+..|++++-.+++++|+..|++
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~------~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADE------NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhh------hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444222222 4444444445555455555544444555544444455555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++.++|++...+..++.+.++ +++++++...|+.++...|+.++++...|.++..++++++|++.|++++.+.|....+
T Consensus 420 ai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 420 AISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 555555444444444444444 4444445555555544445444444444555555555555555555544444442110
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430 (551)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (551)
..
T Consensus 499 ~v------------------------------------------------------------------------------ 500 (606)
T KOG0547|consen 499 IV------------------------------------------------------------------------------ 500 (606)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510 (551)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 510 (551)
...+.... ....+.-.+++.+|+.+++++++++|..-.++..+|.+..++|+.++|++.|++++
T Consensus 501 -------------~~~plV~K---a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 -------------NAAPLVHK---ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -------------cchhhhhh---hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 00000000 00001112789999999999999999999999999999999999999999999999
Q ss_pred hcCCch
Q psy12713 511 ALNPNF 516 (551)
Q Consensus 511 ~~~p~~ 516 (551)
.+.-.-
T Consensus 565 ~lArt~ 570 (606)
T KOG0547|consen 565 QLARTE 570 (606)
T ss_pred HHHHhH
Confidence 886544
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=7.7e-28 Score=247.20 Aligned_cols=403 Identities=11% Similarity=0.016 Sum_probs=225.0
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (551)
.-..+....|++++|+..+.++....|. ...++..+|.++...|++++|+..++++++.+|.++. ++..++.+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~ 92 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILT 92 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHH
Confidence 3345556677777777777777766665 6667777777777777777777777777777777744 33457777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
+...| ++++|+..+++++..+|+++. +..+|.++...|++++|+..++++++..|++..++..++.++... +
T Consensus 93 l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~------~ 164 (765)
T PRK10049 93 LADAG-QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN------R 164 (765)
T ss_pred HHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------C
Confidence 77777 777777777777777777777 777777777777777777777777777777777777666655544 5
Q ss_pred HHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHH-----hccCH---HHHHHHHHHHHhcCCCCHHH-------HHH-
Q psy12713 226 RVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLV-----DQEDF---DGAEEYFNRSIRVDPENASL-------YVH- 284 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~- 284 (551)
..++|+..++++.. .|+.. ........+.. ..+++ ++|+..++.+++..|.++.. ...
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 55556555554443 33210 01111111111 11223 45555555555432222211 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCcCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH----HHHHHHhHHHH
Q psy12713 285 RAMLMLQARGNVDEAIKLIEKAISIDKSCM-FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA----ELSHIYSLRDA 359 (551)
Q Consensus 285 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~ 359 (551)
++.+ +. .|++++|+..|+++++..|..+ .+...+|.++...|++++|+..|++++...|.+. .....+....
T Consensus 244 l~~L-l~-~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~- 320 (765)
T PRK10049 244 LGAL-LA-RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL- 320 (765)
T ss_pred HHHH-HH-hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH-
Confidence 2222 33 4555666666666555543211 1223345555566666666666665555554431 1111111110
Q ss_pred HHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCc
Q psy12713 360 AIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDP 439 (551)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (551)
....+..++.... ..+....+....... .....|.+.
T Consensus 321 -~~~g~~~eA~~~l--------------~~~~~~~P~~~~~~~----------------------------~~~~~p~~~ 357 (765)
T PRK10049 321 -LESENYPGALTVT--------------AHTINNSPPFLRLYG----------------------------SPTSIPNDD 357 (765)
T ss_pred -HhcccHHHHHHHH--------------HHHhhcCCceEeecC----------------------------CCCCCCCch
Confidence 0011111100000 000000000000000 000000000
Q ss_pred chhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHH
Q psy12713 440 TKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 519 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 519 (551)
........+..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++++|++..+
T Consensus 358 --------~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 358 --------WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 000011122234556888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q psy12713 520 RAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 520 ~~~l~~~~~~~~~~~~a~~ 538 (551)
++.+|.++...++..+|..
T Consensus 430 ~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 8888888887776665543
No 15
>KOG2002|consensus
Probab=99.97 E-value=2.7e-28 Score=233.86 Aligned_cols=441 Identities=14% Similarity=0.084 Sum_probs=335.4
Q ss_pred HHHHHHHHHHhhhcH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDY--LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
.++.++..++..|+. +.|...|..+++..|+ +..+++..|.+.+..|+|-.|+.+|++++.++|..+. ...+
T Consensus 130 ~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~---Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a---D~rI 203 (1018)
T KOG2002|consen 130 HLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD---NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA---DVRI 203 (1018)
T ss_pred hhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc---chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC---Cccc
Confidence 344555556666655 9999999999999999 9999999999999999999999999999999886432 1224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ---YEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
.+|.|++.+| +.+.|+..|.++++++|.+..++..||.+-....+ +..+...+.++...++.+|.+...++..++.
T Consensus 204 gig~Cf~kl~-~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 204 GIGHCFWKLG-MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYF 282 (1018)
T ss_pred hhhhHHHhcc-chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh
Confidence 4899999999 99999999999999999999999999988776554 6789999999999999999999999977776
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQAR 293 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 293 (551)
. |+++.+......++..... -++.++.+|++|..+|++++|..+|.+++..+|++ .-.++.+|..++. .
T Consensus 283 K------~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~ 355 (1018)
T KOG2002|consen 283 K------KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-R 355 (1018)
T ss_pred c------ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-h
Confidence 6 9999999999999886633 35679999999999999999999999999999998 7788999999888 9
Q ss_pred CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC----CHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG----RLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (551)
|+++.|..+|++++...|++.++...+|.+|...+ ..+.|..++.+++...|.+.+.|..++........+..
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s--- 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS--- 432 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH---
Confidence 99999999999999999999999999999999886 67899999999999999998887766544111111100
Q ss_pred hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY 449 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (551)
...+..++..+......+....-...+...+..+.+..+...+..+...-....+.+.. .....
T Consensus 433 --------------L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~l 496 (1018)
T KOG2002|consen 433 --------------LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNL 496 (1018)
T ss_pred --------------HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchh
Confidence 11111222221111110000000000011111222222222221111110000000000 01113
Q ss_pred ccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 450 GNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
...|+.+.+....++++.|.+.|..+++.+|+..+++..+|.+....++..+|...++.++..+..++.++..+|.++..
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 34566666688889999999999999999999999999999888899999999999999999999999999999988887
Q ss_pred hhhhhhh
Q psy12713 530 TLAELMA 536 (551)
Q Consensus 530 ~~~~~~a 536 (551)
..++..+
T Consensus 577 k~~~~~a 583 (1018)
T KOG2002|consen 577 KSEWKPA 583 (1018)
T ss_pred hhhhccc
Confidence 5554433
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=7.8e-28 Score=247.15 Aligned_cols=384 Identities=11% Similarity=0.006 Sum_probs=286.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..+...|..+...|++++|+..|++++...|. ++.++..+|.++...|++++|+..++++++..|+++. +
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-----~ 119 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-----L 119 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----H
Confidence 4566899999999999999999999999999998 8999999999999999999999999999999999854 5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA-----RAQRHFV 214 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----~~~~~~~ 214 (551)
..+|.++...| ++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|+.... .......
T Consensus 120 ~~la~~l~~~g-~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~ 197 (765)
T PRK10049 120 LALAYVYKRAG-RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRL 197 (765)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 56999999999 999999999999999999999999999999999999999999988776 5543111 1111111
Q ss_pred HHHhhcCCChhHH---HHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH-HHHH
Q psy12713 215 VHKMIVPGDRERV---EQSLKEFRNFVDTHSNVVE-------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYV 283 (551)
Q Consensus 215 ~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 283 (551)
... ......+++ ++|+..++.+++..|.++. +.......+...|++++|+..|+++++..|..+ .+..
T Consensus 198 ~~~-~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~ 276 (765)
T PRK10049 198 SFM-PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR 276 (765)
T ss_pred hcc-cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH
Confidence 100 122333455 8999999999976444432 222212234677899999999999988764432 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC-------------
Q psy12713 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTIEVQRGRLEEAVKCFNKALPLARD------------- 346 (551)
Q Consensus 284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------- 346 (551)
.+|.+++. .|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 277 ~la~~yl~-~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 277 WVASAYLK-LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHh-cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 46778777 899999999999998887765 356777888889999999999999998887763
Q ss_pred HH--HHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHH
Q psy12713 347 EA--ELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMT 424 (551)
Q Consensus 347 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (551)
+. .+....+.. ... .+....++..+.+.
T Consensus 356 ~~~~~a~~~~a~~--l~~---------------------~g~~~eA~~~l~~a--------------------------- 385 (765)
T PRK10049 356 DDWLQGQSLLSQV--AKY---------------------SNDLPQAEMRAREL--------------------------- 385 (765)
T ss_pred chHHHHHHHHHHH--HHH---------------------cCCHHHHHHHHHHH---------------------------
Confidence 11 122222111 000 01111222222221
Q ss_pred hhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHH
Q psy12713 425 SILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 504 (551)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 504 (551)
....|+++.. ....+..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|..
T Consensus 386 -------l~~~P~n~~l----------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 386 -------AYNAPGNQGL----------RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred -------HHhCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 1112222211 12222336677999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHH
Q psy12713 505 NLDKTIALNPNFHVARAQ 522 (551)
Q Consensus 505 ~~~~al~~~p~~~~a~~~ 522 (551)
.++++++.+|+++.+...
T Consensus 449 ~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 449 LTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHhCCCCHHHHHH
Confidence 999999999999976543
No 17
>KOG1126|consensus
Probab=99.97 E-value=1.8e-28 Score=226.62 Aligned_cols=261 Identities=18% Similarity=0.191 Sum_probs=183.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (551)
..|......-+..+|+..|.+.-...++ ...++..+|.+|+.+++|++|..+|+.+-+..|-..+. .-....+
T Consensus 324 ~~~~~~~s~y~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~----meiyST~ 396 (638)
T KOG1126|consen 324 GEGYRSLSQYNCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG----MEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----hhHHHHH
Confidence 3444455566677888888886666666 56788888888888888888888888888877754222 2224556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
++.+. +.-+---..+..+..+|+.|+.|..+|.||.-+++++.|+++|+++++++|....++..+|.-+... .
T Consensus 397 LWHLq-~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~------e 469 (638)
T KOG1126|consen 397 LWHLQ-DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT------E 469 (638)
T ss_pred HHHHH-hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh------H
Confidence 66666 5444444556677778888888888888888888888888888888888888777777777444433 7
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
.++.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+ .|+.++|+.++++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYEK 548 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777555 7777777777777
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
|+.++|.++...+..|.+++..+++++|+..+++..
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 777777777766666666666666555555555443
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3.5e-26 Score=234.65 Aligned_cols=350 Identities=12% Similarity=0.029 Sum_probs=280.7
Q ss_pred hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC-
Q psy12713 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS- 151 (551)
Q Consensus 73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 151 (551)
..+.+.+|........+..|. +..++..++......|++++|...++.+....+ +..........++.+|...+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG-DARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc-ccccCHHHHHHHHHHHHhCCcc
Confidence 446677777777777777777 888999999999999999999999999988632 222211112246666655540
Q ss_pred -----------------------CH---HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713 152 -----------------------DF---TKAFADLDEAEKVDPN--VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203 (551)
Q Consensus 152 -----------------------~~---~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 203 (551)
+. ..+...+.+++...|. ++.+++.+|.++.. ++..+|+..+.+++...|+
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd 508 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD 508 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc
Confidence 22 2234455556666777 89999999999987 8999999999999999997
Q ss_pred CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 204 FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 283 (551)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 283 (551)
+.. ...++..+... |++++|+..++++....|.. ..+..+|.++...|++++|+.++++++..+|+......
T Consensus 509 ~~~-~L~lA~al~~~------Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 509 AWQ-HRAVAYQAYQV------EDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred hHH-HHHHHHHHHHC------CCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 543 44556555555 99999999999987775554 45788899999999999999999999999999887777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHH
Q psy12713 284 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQ 363 (551)
Q Consensus 284 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 363 (551)
.++..... .|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..|++++.++|++..+...++..
T Consensus 581 ~La~~l~~-~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a------ 652 (987)
T PRK09782 581 WLHAQRYI-PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA------ 652 (987)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Confidence 76666444 79999999999999999996 89999999999999999999999999999999988754443322
Q ss_pred HHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhh
Q psy12713 364 MKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTI 443 (551)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (551)
T Consensus 653 -------------------------------------------------------------------------------- 652 (987)
T PRK09782 653 -------------------------------------------------------------------------------- 652 (987)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHH
Q psy12713 444 EESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 523 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 523 (551)
+...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+....
T Consensus 653 ---------------L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~ 717 (987)
T PRK09782 653 ---------------LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLT 717 (987)
T ss_pred ---------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhh
Confidence 44458899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhh
Q psy12713 524 HFVWTSTLAELMAFS 538 (551)
Q Consensus 524 ~~~~~~~~~~~~a~~ 538 (551)
|.+.....+...+..
T Consensus 718 g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 718 PEQNQQRFNFRRLHE 732 (987)
T ss_pred hHHHHHHHHHHHHHH
Confidence 998887766555544
No 19
>KOG1155|consensus
Probab=99.96 E-value=5.6e-26 Score=200.59 Aligned_cols=360 Identities=16% Similarity=0.057 Sum_probs=309.0
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
+.++-.++..|..+-..|....|+..|..++...|- +..+|..++.+... ++........-|.+..+ .
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~---~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~--M 228 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW---FWSAWLELSELITD-------IEILSILVVGLPSDMHW--M 228 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc---chHHHHHHHHhhch-------HHHHHHHHhcCcccchH--H
Confidence 446777888999999999999999999999999997 88999888876432 33344444334433332 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
.-+.++.++.... +.++++.-++..... .|.+...-...|.+.....++++|+..|+...+.+|-..+-.-....+++
T Consensus 229 ~~~F~~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 3356888999999 999999999999988 88888889999999999999999999999999999987766666666666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 296 (551)
.. ++-.+-.-..+.+..++.-.++....+|+.|.-.++.++|+.+|+++++++|....+|..+|.-|+. +++.
T Consensus 308 v~------~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt 380 (559)
T KOG1155|consen 308 VK------NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNT 380 (559)
T ss_pred HH------hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hccc
Confidence 55 5545555555667778888889999999999999999999999999999999999999999999888 9999
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (551)
..|++.|+++++++|.+..+|+.+|+.|..++...=|+-+|++|....|++..+|..++.+
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C------------------- 441 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC------------------- 441 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999887766544
Q ss_pred CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES 456 (551)
Q Consensus 377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (551)
T Consensus 442 -------------------------------------------------------------------------------- 441 (559)
T KOG1155|consen 442 -------------------------------------------------------------------------------- 441 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh-------cCCchHHHHHHHHHHHHH
Q psy12713 457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA-------LNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~l~~~~~~ 529 (551)
|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ .+|+-..+..-|+.-+.+
T Consensus 442 --Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 442 --YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred --HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 55568899999999999999988899999999999999999999999999998 678788888888888888
Q ss_pred hhhhhhhhh
Q psy12713 530 TLAELMAFS 538 (551)
Q Consensus 530 ~~~~~~a~~ 538 (551)
.++..+|..
T Consensus 520 ~~~~~~As~ 528 (559)
T KOG1155|consen 520 MKDFDEASY 528 (559)
T ss_pred hcchHHHHH
Confidence 887776654
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=3e-26 Score=235.12 Aligned_cols=361 Identities=11% Similarity=-0.029 Sum_probs=302.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-------------------------
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ------------------------- 113 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~------------------------- 113 (551)
.+.+.+...+......|++++|...|+++....++..........++.+|...+.
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 3678899999999999999999999999998744321112233366777666544
Q ss_pred chH---HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH
Q psy12713 114 STK---AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA 190 (551)
Q Consensus 114 ~~~---A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 190 (551)
..+ +...+.+++...|.+ ....+++.+|.++.. + +..+|+..+.+++...|++. ....+|.++...|++++|
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~--~~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPS--YDAAAWNRLAKCYRD-T-LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCC--CCHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHH
Confidence 322 233333444444441 125578889999987 7 89999999999999999764 466778888899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 191 LRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
+..|+++....|.+ ..+..++.++... |++++|+.+++++++..|........++......|++++|+..+++
T Consensus 529 i~~~rka~~~~p~~-~a~~~la~all~~------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 529 LAAWQKISLHDMSN-EDLLAAANTAQAA------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHhccCCCc-HHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999988776654 4567778776666 9999999999999999999988888777777788999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 271 SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
+++.+|+ +..+.++|.++.+ .|++++|+..+++++..+|+++.++.++|.++...|++++|+..|+++++..|+++.+
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999997 8999999999777 9999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccC
Q psy12713 351 SHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSN 430 (551)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (551)
+..++..
T Consensus 680 ~~nLA~a------------------------------------------------------------------------- 686 (987)
T PRK09782 680 IRQLAYV------------------------------------------------------------------------- 686 (987)
T ss_pred HHHHHHH-------------------------------------------------------------------------
Confidence 5444322
Q ss_pred CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHh
Q psy12713 431 DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 510 (551)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 510 (551)
+...|++++|+..|+++++++|+++.+....|.+.....+++.|.+.++++.
T Consensus 687 ----------------------------l~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 687 ----------------------------NQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred ----------------------------HHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4556999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhhhhhh
Q psy12713 511 ALNPNFHVARAQRHFVWTSTLAELM 535 (551)
Q Consensus 511 ~~~p~~~~a~~~l~~~~~~~~~~~~ 535 (551)
.++|+.. +....|.++...++...
T Consensus 739 ~~~~~~~-a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 739 TFSFDSS-IGLRSGAMSTANNNVGG 762 (987)
T ss_pred hcCccch-hccccchHhhhcccccC
Confidence 9999998 88888888887665533
No 21
>KOG1126|consensus
Probab=99.96 E-value=7.9e-28 Score=222.37 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=200.3
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLH--AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 138 ~~~~la~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
.+..+|..+.. +- +..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-+..|-.....-....++
T Consensus 319 llr~~~~~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 34444444433 33 4567777777755556666667777777777777777777777777777775444443344444
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
+.+ .+--+--...+..+..+|+.|+.|..+|.+|.-+++++.|+++|+++++++|....++..+|.-+.. ...
T Consensus 398 WHL------q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee 470 (638)
T KOG1126|consen 398 WHL------QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEE 470 (638)
T ss_pred HHH------HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHH
Confidence 443 4444444455566677777777777777777777777777777777777777777777777776555 677
Q ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (551)
++.|..+|++++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~--------------------- 529 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI--------------------- 529 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh---------------------
Confidence 77777777777777777777777777777777777777777777777777765432221
Q ss_pred CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhh
Q psy12713 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENE 455 (551)
Q Consensus 376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (551)
T Consensus 530 -------------------------------------------------------------------------------- 529 (638)
T KOG1126|consen 530 -------------------------------------------------------------------------------- 529 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhh
Q psy12713 456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELM 535 (551)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~ 535 (551)
+..+.+.|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..+++.-++-|+...+++.+|.+|..+|++..
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 11244456777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred hhhhh
Q psy12713 536 AFSDE 540 (551)
Q Consensus 536 a~~~~ 540 (551)
|+..+
T Consensus 610 Al~~f 614 (638)
T KOG1126|consen 610 ALLHF 614 (638)
T ss_pred HHHhh
Confidence 66543
No 22
>KOG0624|consensus
Probab=99.96 E-value=9.7e-26 Score=191.54 Aligned_cols=329 Identities=15% Similarity=0.221 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.-++.+|..++..|++..|+..|..+++.+|++ ..+++..|.+|+.+| +..-|+..+.+++++.|+...+...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~----Y~aifrRaT~yLAmG-ksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN----YQAIFRRATVYLAMG-KSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh----HHHHHHHHHHHhhhc-CCccchhhHHHHHhcCccHHHHHHH
Confidence 33444444444444444444444444444444444 334444444444444 4444444444444444444444444
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH--HH----HhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHV---ARAQRHFV--VH----KMIVPGDRERVEQSLKEFRNFVDTHSNVVEA 247 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~--~~----~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 247 (551)
+|.+++++|++++|...|+.+++.+|++.. +...++.+ +. .+..+...|+...|+.....++++.|-+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 444444444444444444444444443221 11111100 00 0022333488888888888888888888888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH--------
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET-------- 319 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 319 (551)
+...+.+|...|++..|+..++.+-++..++.+.++.++.+++. .|+.+.++...+++++++|++-..+-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 88888999999999999998888888888888888888888777 888888888888888888886433221
Q ss_pred ----HHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHh
Q psy12713 320 ----LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR 395 (551)
Q Consensus 320 ----l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (551)
-+.-....++|.++++..++.++.+|....+.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-------------------------------------------- 306 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-------------------------------------------- 306 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee--------------------------------------------
Confidence 12223344555566666666655555532210
Q ss_pred hchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHh
Q psy12713 396 ENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEA 475 (551)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 475 (551)
+........++...|++.+||..+.++
T Consensus 307 -----------------------------------------------------~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 307 -----------------------------------------------------YNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred -----------------------------------------------------eeeeheeeecccccCCHHHHHHHHHHH
Confidence 000111112245568999999999999
Q ss_pred hccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 476 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 476 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
+..+|+++.++..++.+|.....|+.|+..|++|.+.+|+|..+...+-.+-.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887765543
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.1e-25 Score=216.66 Aligned_cols=283 Identities=13% Similarity=0.068 Sum_probs=250.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.....|..|..+...|++++|+..|+++++.+|+ ++.++..+|.++...|++++|+..+++++...+........++
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5667788899999999999999999999999998 8999999999999999999999999999985443333334577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV-----ARAQRHFV 214 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-----~~~~~~~~ 214 (551)
..+|.++...| ++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+.. .+..++.+
T Consensus 111 ~~La~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAG-LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 88999999999 9999999999999999999999999999999999999999999999998876533 33445544
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhc
Q psy12713 215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQAR 293 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 293 (551)
+... |++++|+..++++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.++.. .
T Consensus 190 ~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~ 262 (389)
T PRK11788 190 ALAR------GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-L 262 (389)
T ss_pred HHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-c
Confidence 4444 999999999999999999999999999999999999999999999999998876 4567788888777 9
Q ss_pred CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
|++++|+..++++++..|+.. .+..++.++...|++++|+..++++++..|++..+...+
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999999999865 448999999999999999999999999999987655443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1e-24 Score=209.95 Aligned_cols=306 Identities=14% Similarity=0.111 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----hh
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV----AD 172 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 172 (551)
.....+.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...| ++++|+..+++++...+.. ..
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~ 108 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLL 108 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 44566778999999999999999999999999987 346677999999999 9999999999998754322 35
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH-----HH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV-----EA 247 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~ 247 (551)
++..+|.+|...|++++|+..|+++++..|.+..++..++.++... |++++|+..++++++..|.+. ..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 6888999999999999999999999999998888888888777776 999999999999999887653 35
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHH
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQ 326 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 326 (551)
+..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .|++++|+..+++++..+|.+ ..++..++.++..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999999777 999999999999999988876 4667889999999
Q ss_pred hCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccC
Q psy12713 327 RGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD 406 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (551)
.|++++|+..++++++..|+.... ..+
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~l---------------------------------------------------- 288 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGADLL-LAL---------------------------------------------------- 288 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCchHH-HHH----------------------------------------------------
Confidence 999999999999999988875321 111
Q ss_pred CCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHH
Q psy12713 407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSY 486 (551)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 486 (551)
+..+...|++++|+..++++++..|++....
T Consensus 289 -------------------------------------------------a~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 289 -------------------------------------------------AQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred -------------------------------------------------HHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 1113445889999999999999999988766
Q ss_pred hhhhhHHHH--hcCHHHHHHHHHHHh----hcCCch
Q psy12713 487 YQRGQIYCL--FGQYEEALRNLDKTI----ALNPNF 516 (551)
Q Consensus 487 ~~lg~~~~~--~g~~~~A~~~~~~al----~~~p~~ 516 (551)
..++..... .|+.++|+..+++.+ ..+|++
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 555544432 458888887777655 456664
No 25
>KOG1173|consensus
Probab=99.95 E-value=6.3e-25 Score=199.01 Aligned_cols=397 Identities=16% Similarity=0.167 Sum_probs=297.9
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHH------hhcCCCC--
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQL------VEDTSVD-- 131 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------~~~~~~~-- 131 (551)
++...+-+|++++-.|+|..|....+.- ..... +..+.+..+.++....++++|...+... +...|.+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~---d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~ 123 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTY-KLEKR---DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA 123 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence 5677788899999999998887776654 33333 6778888888888888888888887732 1111111
Q ss_pred -------------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------------------------
Q psy12713 132 -------------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---------------------------- 170 (551)
Q Consensus 132 -------------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------- 170 (551)
........+..|.+|.... +.++|...|.+++..++..
T Consensus 124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~-n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 124 NTLELNSAGEDLMINLESSICYLRGKVYVALD-NREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred ceeccCcccccccccchhceeeeeeehhhhhc-cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 1112234455677777777 8888888887776655432
Q ss_pred -----------------------------------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 171 -----------------------------------------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 171 -----------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
++.....+..++..+++.+..+..+..++.+|-+...+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 234455566677778888888888888888887776655
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 289 (551)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 289 (551)
....+++.. |+..+-...-.++++.+|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...|..+
T Consensus 283 ~~ia~l~el------~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 283 LHIACLYEL------GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred HHHHHHHHh------cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 444466666 77777777778888889999999999999999999999999999999999999999999999996
Q ss_pred HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHH
Q psy12713 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCER 369 (551)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (551)
.. .|..++|+..|..|-+..|+.......+|.-|...++++-|.++|.+|+.+.|.++-+..-++.....
T Consensus 357 a~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--------- 426 (611)
T KOG1173|consen 357 AG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--------- 426 (611)
T ss_pred hh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh---------
Confidence 55 89999999999999999999988899999999999999999999999999999998876554433110
Q ss_pred hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhh
Q psy12713 370 YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKY 449 (551)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (551)
.+.+..|...++.....+.. . ....+.+
T Consensus 427 --------------~~~y~~A~~~f~~~l~~ik~----------------------------------~----~~e~~~w 454 (611)
T KOG1173|consen 427 --------------YEEYPEALKYFQKALEVIKS----------------------------------V----LNEKIFW 454 (611)
T ss_pred --------------HhhhHHHHHHHHHHHHHhhh----------------------------------c----cccccch
Confidence 01111222222221100000 0 0000122
Q ss_pred ccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 450 GNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 450 ~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
..+....|. +.+.+.+++|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.++|.++|+|..+-..|+.+..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 334445555 7889999999999999999999999999999999999999999999999999999999988888887765
Q ss_pred H
Q psy12713 529 S 529 (551)
Q Consensus 529 ~ 529 (551)
.
T Consensus 535 ~ 535 (611)
T KOG1173|consen 535 D 535 (611)
T ss_pred h
Confidence 4
No 26
>KOG0548|consensus
Probab=99.95 E-value=2.8e-24 Score=194.14 Aligned_cols=112 Identities=22% Similarity=0.237 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
...-.+|...+..|+|+.|+.+|..++.++|. +...+.+...+|..+|+|++|++.-.+.++++|.- ..+|..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r 75 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSR 75 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHH
Confidence 34567899999999999999999999999998 88899999999999999999999999999999986 557788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 181 (551)
+|..+..+| +|++|+..|.+.++.+|++...+..++.++
T Consensus 76 ~Gaa~~~lg-~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 76 KGAALFGLG-DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hHHHHHhcc-cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999 999999999999999999999998888887
No 27
>KOG2076|consensus
Probab=99.94 E-value=1.6e-23 Score=200.13 Aligned_cols=368 Identities=14% Similarity=0.121 Sum_probs=285.4
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
.+.+..++..|..++..|++++|..++.++++.+|. ++.+|+.+|.+|..+|+.+++...+-.|-.++|.+.+.+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W-- 210 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW-- 210 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH--
Confidence 345788999999999999999999999999999999 999999999999999999999999999999999997654
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
..++....++| ++++|+-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|....-+. ...+...
T Consensus 211 --~~ladls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~-~d~i~~~ 286 (895)
T KOG2076|consen 211 --KRLADLSEQLG-NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI-EDLIRRV 286 (895)
T ss_pred --HHHHHHHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH-HHHHHHH
Confidence 44999999999 9999999999999999999999999999999999999999999999999993322211 1111111
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC-----------------
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DP----------------- 276 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~----------------- 276 (551)
...+...++-+.|++.++.++....+ ..+-+..++.+++....++.|.......... .+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 12233336669999999999884322 3456778899999999999999887766551 00
Q ss_pred ----------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 277 ----------ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 277 ----------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
+-+.....++.+.+. .++..+++..+..--...| +++..+..++.++...|++.+|+.+|..+....+
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~-~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLK-ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhccc-ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 111124444444444 4555555555443222223 3478899999999999999999999999887655
Q ss_pred CHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHh
Q psy12713 346 DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTS 425 (551)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (551)
....
T Consensus 446 ~~~~---------------------------------------------------------------------------- 449 (895)
T KOG2076|consen 446 YQNA---------------------------------------------------------------------------- 449 (895)
T ss_pred ccch----------------------------------------------------------------------------
Confidence 4321
Q ss_pred hhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHH
Q psy12713 426 ILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRN 505 (551)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 505 (551)
..++..+.++..+|.+++|+..|++++...|++.++...|+.++.++|+.++|.+.
T Consensus 450 ------------------------~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 450 ------------------------FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred ------------------------hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 11334444577789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCch---------HHHHHHHHHHHHHhhhhhh
Q psy12713 506 LDKTIALNPNF---------HVARAQRHFVWTSTLAELM 535 (551)
Q Consensus 506 ~~~al~~~p~~---------~~a~~~l~~~~~~~~~~~~ 535 (551)
+++...-||.+ ......++.++...|+..+
T Consensus 506 L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 506 LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99987444322 3345666677777666544
No 28
>KOG1155|consensus
Probab=99.94 E-value=2.4e-23 Score=184.12 Aligned_cols=341 Identities=15% Similarity=0.136 Sum_probs=275.1
Q ss_pred hhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHhcC
Q psy12713 73 EHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-TSVDPKIKVNAHIKRAVVHLHAAS 151 (551)
Q Consensus 73 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~ 151 (551)
..++.-.-+..........|. ..+...-+.++.++....+.++++.-++..... .|.++.+... .|.+.....
T Consensus 203 eL~~lit~~e~~~~l~~~l~~-~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~----~A~~~y~~r- 276 (559)
T KOG1155|consen 203 ELSELITDIEILSILVVGLPS-DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQ----IAAASYNQR- 276 (559)
T ss_pred HHHHhhchHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHH----HHHHHhhhh-
Confidence 334444444444444444442 025666677888888888999999999998887 7777665555 889999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
++++|+..|+...+.+|-..+-.-...++++-.++-.+-.-..+.+..++.-.++.--.+|..+... ++.++|+
T Consensus 277 DfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr------~eHEKAv 350 (559)
T KOG1155|consen 277 DFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR------SEHEKAV 350 (559)
T ss_pred hHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH------HhHHHHH
Confidence 9999999999999999988877777788777777765555556667777766666655566444444 9999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+..+|+.+|..|-. ++-..=|+-+|++++...|
T Consensus 351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999666 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAI 391 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 391 (551)
+++..|..||.||.+.++.++|+++|.+++.....+..+...+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L------------------------------------- 472 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL------------------------------------- 472 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH-------------------------------------
Confidence 9999999999999999999999999999998876644432221
Q ss_pred HHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHh
Q psy12713 392 KQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFAD 471 (551)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 471 (551)
+..+.+.++.++|..+
T Consensus 473 ----------------------------------------------------------------akLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 473 ----------------------------------------------------------------AKLYEELKDLNEAAQY 488 (559)
T ss_pred ----------------------------------------------------------------HHHHHHHHhHHHHHHH
Confidence 1124455788999999
Q ss_pred hHHhhc-------cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q psy12713 472 LDEAEK-------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVW 527 (551)
Q Consensus 472 ~~~al~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 527 (551)
|++.++ .+|+...+...|+.-+.+.+++++|..+..+++.-+|...++...+-.+.
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 998888 45667778888999999999999999999999999888777765554443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1.1e-22 Score=204.78 Aligned_cols=406 Identities=13% Similarity=0.042 Sum_probs=283.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+...+..+...++.|+++.|+..|+++++.+|. ++.+...++.++...|+.++|+.++++++ .|.+... ..+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~--~~l 105 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISS--RGL 105 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCH--HHH
Confidence 5678999999999999999999999999999998 64333488888889999999999999999 4444432 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++...| ++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++..
T Consensus 106 lalA~ly~~~g-dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-- 181 (822)
T PRK14574 106 ASAARAYRNEK-RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-- 181 (822)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--
Confidence 55688999999 99999999999999999999999999999999999999999999999999985554 444433322
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH-----------------------------
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR----------------------------- 270 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------------------- 270 (551)
.++..+|+..+++++..+|++.+++..+..++...|-...|.+...+
T Consensus 182 ----~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 182 ----TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred ----cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 37776799999999999999999888888888777766555554432
Q ss_pred -------------------HHhc---CCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Q psy12713 271 -------------------SIRV---DPENAS----LYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETLGTI 323 (551)
Q Consensus 271 -------------------~~~~---~~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 323 (551)
.+.. .|.... +....-.++.. .|++.+++..|+...... |--+.+....|..
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~-r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV-RHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 2221 121111 11122222233 677777777777665433 2234566677777
Q ss_pred HHHhCCHHHHHHHHHHhcccccC----HHHHH--H--HHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHh
Q psy12713 324 EVQRGRLEEAVKCFNKALPLARD----EAELS--H--IYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLR 395 (551)
Q Consensus 324 ~~~~g~~~~A~~~~~~a~~~~~~----~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (551)
|...++.++|...|+.++.-.|. ..++. . .++..+ .+.+..+...+.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld-------------------------~e~~~~A~~~l~ 391 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE-------------------------SEQLDKAYQFAV 391 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh-------------------------cccHHHHHHHHH
Confidence 77788888888888777665421 11110 1 111110 001111111111
Q ss_pred hchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhc-hhhhhcChhHHHHhhHH
Q psy12713 396 ENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG-QKHAASDFTKAFADLDE 474 (551)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~ 474 (551)
+......-.....+.... ...+.+........ .+...|++.+|++.+++
T Consensus 392 ~~~~~~p~~~~~~~~~~~------------------------------~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGK------------------------------EPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred HHHhcCCcEEeccCCCCC------------------------------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 100000000000000000 00112222222222 24556999999999999
Q ss_pred hhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhh
Q psy12713 475 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMA 536 (551)
Q Consensus 475 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 536 (551)
.+...|.|+.++..+|.++...|.+.+|...++.++.++|++..+...++.+....++..+|
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887766
No 30
>KOG0548|consensus
Probab=99.94 E-value=3.2e-23 Score=187.32 Aligned_cols=355 Identities=20% Similarity=0.276 Sum_probs=256.8
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI 180 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 180 (551)
....|...+..|+++.|+.+|..++.++|.+... |.+...+|..+| +|++|++.-.+.++++|+.+..|..+|..
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl----ySnrsaa~a~~~-~~~~al~da~k~~~l~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL----YSNRSAAYASLG-SYEKALKDATKTRRLNPDWAKGYSRKGAA 79 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccch----hcchHHHHHHHh-hHHHHHHHHHHHHhcCCchhhHHHHhHHH
Confidence 3456888999999999999999999999997543 455999999999 99999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh----cCCC-----------hhHH---HHHHHHHHHHHHhCC
Q psy12713 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI----VPGD-----------RERV---EQSLKEFRNFVDTHS 242 (551)
Q Consensus 181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~~~---~~A~~~~~~~~~~~~ 242 (551)
+.-.|+|++|+..|.+.++.+|++......+..++.... .+.. .-+. +.+.....+.+..+|
T Consensus 80 ~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 80 LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999999999999999999999888877776551110 0000 0000 011111111111111
Q ss_pred Cc--------------------------------------------------------------HHHHHHHHHHHHhccC
Q psy12713 243 NV--------------------------------------------------------------VEACTLFAQVLVDQED 260 (551)
Q Consensus 243 ~~--------------------------------------------------------------~~~~~~la~~~~~~~~ 260 (551)
.+ ....-.+|.......+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 10 0123567888888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHH
Q psy12713 261 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A 333 (551)
+..|++.|..+++++ .+...+.+.+.+++. .|.+.+++.....+++..... ..+...+|..+.+.++++.|
T Consensus 240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e-~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA-TDITYLNNIAAVYLE-RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHh-ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999999999988 777888888888887 888888888888877665432 23344567778888889999
Q ss_pred HHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccc
Q psy12713 334 VKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVV 413 (551)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 413 (551)
+.+|++++....+ ++....+... +.+++.... .
T Consensus 318 i~~~~kaLte~Rt-~~~ls~lk~~------------------------------Ek~~k~~e~---~------------- 350 (539)
T KOG0548|consen 318 IKYYQKALTEHRT-PDLLSKLKEA------------------------------EKALKEAER---K------------- 350 (539)
T ss_pred HHHHHHHhhhhcC-HHHHHHHHHH------------------------------HHHHHHHHH---H-------------
Confidence 9999887765443 1111111100 000000000 0
Q ss_pred cCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHH
Q psy12713 414 MDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 493 (551)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 493 (551)
.--.+.. ....-..+..++..|+|..|+..|.++|+.+|+++..|.++|.||
T Consensus 351 ---------------------a~~~pe~-------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 351 ---------------------AYINPEK-------AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred ---------------------HhhChhH-------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0000000 000111233478889999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713 494 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAF 537 (551)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 537 (551)
.++|++..|+.+.+++++++|++..+|.+.|.++..+.++..|.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877766544
No 31
>KOG0624|consensus
Probab=99.93 E-value=3.3e-23 Score=176.28 Aligned_cols=309 Identities=20% Similarity=0.257 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
+.-.+.+|..++..| ++..|+..|..+++.+|++-.+++.+|.+|..+|+..-|+..+.+++++.|+...+..++|.++
T Consensus 38 vekhlElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 38 VEKHLELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 445677999999999 9999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcH---HH------------HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV---EA------------CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
++. |.+++|...|..+++.+|++. ++ +......+...|+...|+....+.+++.|-+..
T Consensus 117 lK~------Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 117 LKQ------GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred hhc------ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 776 999999999999999999652 22 223344556789999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHH
Q psy12713 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360 (551)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (551)
.+...+.||.. .|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++......|.....
T Consensus 191 l~~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK- 268 (504)
T KOG0624|consen 191 LRQARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK- 268 (504)
T ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH-
Confidence 99999999877 9999999999999999999999999999999999999999999999999999998876555432210
Q ss_pred HHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcc
Q psy12713 361 IAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPT 440 (551)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (551)
..+.+..
T Consensus 269 -----------------------------v~K~les-------------------------------------------- 275 (504)
T KOG0624|consen 269 -----------------------------VVKSLES-------------------------------------------- 275 (504)
T ss_pred -----------------------------HHHHHHH--------------------------------------------
Confidence 0111100
Q ss_pred hhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchH----HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 441 KTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD----SYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
.......++|.++++..++.++.+|..+. ..-.+..|+...|++.+|+..+..+|.++|++
T Consensus 276 ---------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 276 ---------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred ---------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence 00122337899999999999999998443 45567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhc
Q psy12713 517 HVARAQRHFVWTSTLAELMAFSDEF 541 (551)
Q Consensus 517 ~~a~~~l~~~~~~~~~~~~a~~~~~ 541 (551)
..++..++.+|.....+.+|+.+.-
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998888888877654
No 32
>KOG2003|consensus
Probab=99.93 E-value=2e-23 Score=184.18 Aligned_cols=389 Identities=13% Similarity=0.080 Sum_probs=293.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
+..|..++++.+|.+|+++|+-++...|.- .....++..+|..+.+.|+|+.|+..|+.+.+..|+. .+-+++
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~-----~a~~nl 315 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF-----IAALNL 315 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH-----Hhhhhh
Confidence 456888889999999999999999888864 3446677888888999999999999999998888763 233456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--------------CCC---------------------------------------
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKV--------------DPN--------------------------------------- 169 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~--------------~~~--------------------------------------- 169 (551)
..|++..| +-++-.+.|.+.+.+ +|+
T Consensus 316 ~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi 394 (840)
T KOG2003|consen 316 IICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVI 394 (840)
T ss_pred hhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccc
Confidence 77777777 777777777766654 111
Q ss_pred -----------------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhhcCCChh
Q psy12713 170 -----------------------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 170 -----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 225 (551)
-.+.-.+.+..+++.|+++.|++.++-.-+.+.... .+-.++..+++. ..-.
T Consensus 395 ~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~fl----qggk 470 (840)
T KOG2003|consen 395 APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFL----QGGK 470 (840)
T ss_pred ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHH----hccc
Confidence 023556778889999999999998876555443322 223344444333 1226
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
++..|.++...++..+.-++.+..+.|.+.+..|++++|.+.|++++..+.....+++++|..+-. +|+.++|+++|-+
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~~ldeald~f~k 549 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LGNLDEALDCFLK 549 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hcCHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999555 9999999999999
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhH
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITK 385 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (551)
.-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.+..-++......
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe------------------------ 605 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE------------------------ 605 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc------------------------
Confidence 88888888999999999999999999999999999999999998876654331000
Q ss_pred HHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcCh
Q psy12713 386 NEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDF 465 (551)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
++-.++...+.. .+...|.+.+..- ..+..|....-+
T Consensus 606 -------------------------------gdksqafq~~yd--syryfp~nie~ie----------wl~ayyidtqf~ 642 (840)
T KOG2003|consen 606 -------------------------------GDKSQAFQCHYD--SYRYFPCNIETIE----------WLAAYYIDTQFS 642 (840)
T ss_pred -------------------------------cchhhhhhhhhh--cccccCcchHHHH----------HHHHHHHhhHHH
Confidence 000000000000 1111121111111 111113344557
Q ss_pred hHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713 466 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL 531 (551)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 531 (551)
++|+.+|+++.-+.|+.......++.|+.+.|+|++|.+.|+......|.+.+.+..|..+...+|
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 889999999999999999999999999999999999999999999999999998888777766555
No 33
>KOG0495|consensus
Probab=99.92 E-value=2.3e-21 Score=178.66 Aligned_cols=382 Identities=16% Similarity=0.113 Sum_probs=286.9
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
++.-..|+.-+..+...+-++-|+.+|..+|+..|. ....|...+..--..|..++-..++++++..-|..+..
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~l--- 586 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEIL--- 586 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhH---
Confidence 445567777788888888888888888888888887 67777777766667788888888888888888776443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
|+..+..+...| +...|...+.++++.+|++.++|+.-..+.....+++.|...|.++....|. ...|+..+.....
T Consensus 587 -wlM~ake~w~ag-dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 -WLMYAKEKWKAG-DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERY 663 (913)
T ss_pred -HHHHHHHHHhcC-CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH
Confidence 344777777788 8888888888888888888888888888888888888888888888876654 3455555544444
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (551)
. ++.++|+..++++++.+|+....|..+|+++.++++.+.|...|...++..|..+..|..++.+ -.+.|+.-
T Consensus 664 l------d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl-eEk~~~~~ 736 (913)
T KOG0495|consen 664 L------DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL-EEKDGQLV 736 (913)
T ss_pred h------hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH-HHHhcchh
Confidence 4 8888888888888888888888888888888888888888888888888888888888888887 44478888
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCC
Q psy12713 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVS 377 (551)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (551)
.|...++++.-.+|++...|.....+-.+.|+.+.|...+.+|++..|++..+|.--.. ..+...
T Consensus 737 rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~---------------le~~~~ 801 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW---------------LEPRPQ 801 (913)
T ss_pred hHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH---------------hccCcc
Confidence 88888888888888888888888888888888888888888888888887765432110 000000
Q ss_pred cchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhc
Q psy12713 378 PRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESG 457 (551)
Q Consensus 378 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (551)
. ......+++.... ++... ...+.
T Consensus 802 r-----kTks~DALkkce~-----------------------------------------dphVl----------laia~ 825 (913)
T KOG0495|consen 802 R-----KTKSIDALKKCEH-----------------------------------------DPHVL----------LAIAK 825 (913)
T ss_pred c-----chHHHHHHHhccC-----------------------------------------CchhH----------HHHHH
Confidence 0 0011112221111 11111 11122
Q ss_pred hhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 458 QKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
.+....++++|.++|.++++.+|++.++|...-..+...|.-++-.+.+.++..-.|.+.+.|.....-
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 255567899999999999999999999998888899999998999999999999999988877765443
No 34
>KOG1173|consensus
Probab=99.92 E-value=1.6e-22 Score=183.61 Aligned_cols=284 Identities=17% Similarity=0.160 Sum_probs=258.5
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV 136 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 136 (551)
...+++....+|..++..++|.+..++++..++.+|- +..++....-++..+|+..+-...-.+.++..|+.+.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf---h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~--- 313 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF---HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL--- 313 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC---CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc---
Confidence 3458899999999999999999999999999999997 7766666555999999999988888999999999855
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
.|+..|..|...| ++++|..+|.++..++|....+|...|..+...|+.++|+.+|..|.++-|........+|.-+.
T Consensus 314 -sW~aVg~YYl~i~-k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 314 -SWFAVGCYYLMIG-KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred -chhhHHHHHHHhc-CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 5666999999999 99999999999999999999999999999999999999999999999999998888888886666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD----P---ENASLYVHRAMLM 289 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~---~~~~~~~~l~~~~ 289 (551)
+. ++++-|...|.+++.+.|.++-+...+|.+.+..+.|.+|..+|+.++..- + .....+.++|.++
T Consensus 392 ~t------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 392 RT------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred Hh------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 66 999999999999999999999999999999999999999999999998432 1 2345688999995
Q ss_pred HHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 290 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 290 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
++.+.+++|+..+++++...|.++.++..+|.+|..+|+++.|+++|.+++.+.|++..+...+.
T Consensus 466 -Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 466 -RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred -HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999987766665
No 35
>KOG0495|consensus
Probab=99.92 E-value=3.3e-21 Score=177.61 Aligned_cols=388 Identities=13% Similarity=0.011 Sum_probs=253.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+-+.|+..|..+-..|-.-.+..+...+|...-+....-..|..-+..+.+.+-++-|+..|..+++..|....++
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slW---- 553 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLW---- 553 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHH----
Confidence 4566666666666666666666666666655443333556666677777777777777777777777777664432
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
...+..--..| ..+.-..++++++...|.....|.+.+..+...|+...|...+.++++.+|++.+.|.....+.+.
T Consensus 554 lra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-- 630 (913)
T KOG0495|consen 554 LRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-- 630 (913)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc--
Confidence 33455555555 667777777777777777777777777777777777777777777777777777766655433333
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
..+++.|...|.++....|. ..+|..-+.+...+++.++|+..++++++..|+....|..+|.++-+ +++.+.|
T Consensus 631 ----n~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~a 704 (913)
T KOG0495|consen 631 ----NDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMA 704 (913)
T ss_pred ----cccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHH
Confidence 36777777777777664443 45666666777777777777777777777777777777777777444 7777777
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR 379 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (551)
...|...++..|.++..|..++.+-.+.|+...|...++++.-.+|++..+|.....
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir----------------------- 761 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR----------------------- 761 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH-----------------------
Confidence 777777777777777777777777777777777777777777777777665432211
Q ss_pred hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713 380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459 (551)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
.-++.+..+.+..-...++...+..+.++.....+
T Consensus 762 ---------------------------------------------~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 762 ---------------------------------------------MELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred ---------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 11111111111111112222223333333222221
Q ss_pred hhh-cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhh
Q psy12713 460 HAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLA 532 (551)
Q Consensus 460 ~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 532 (551)
... ++ ......|++....++.++...|..+....++++|.++|.++++++|++.++|...-..+...|.
T Consensus 797 e~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 797 EPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred ccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC
Confidence 111 12 2223445556678899999999999999999999999999999999999999888888777773
No 36
>KOG2076|consensus
Probab=99.92 E-value=2e-21 Score=185.96 Aligned_cols=329 Identities=15% Similarity=0.141 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
...++..|+..+..|++++|...+.++++.+|.++ .+|..+|.+|.++| +.+++....-.+-.++|.+.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~----~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP----IAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----hhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 55566666666666777777777777777777663 35555777777777 77777777777777777777777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV-----EACTLFA 252 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la 252 (551)
+....++|++++|.-+|.++++.+|.+....+..+.++.+. |+...|...|.+++...|... ......+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~------G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT------GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 77777777777777777777777777766666666555555 777777777777777766221 1223345
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcC----------------
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKS---------------- 312 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~---------------- 312 (551)
..+...++-+.|++.++.++.... ...+.+..++.+++. ...++.|.......... .++
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~-~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK-NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 555666666777777776666221 122334445555455 56666666655544431 000
Q ss_pred ----------CHHH-HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchh
Q psy12713 313 ----------CMFA-YETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQ 381 (551)
Q Consensus 313 ----------~~~~-~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (551)
+..+ ...++.+..+.++..+++..+..--...|.+..
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~-------------------------------- 414 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV-------------------------------- 414 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH--------------------------------
Confidence 0111 334444444444444444443322221111110
Q ss_pred hhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhh
Q psy12713 382 NITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHA 461 (551)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
..+......+..
T Consensus 415 --------------------------------------------------------------------dL~~d~a~al~~ 426 (895)
T KOG2076|consen 415 --------------------------------------------------------------------DLYLDLADALTN 426 (895)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHh
Confidence 001111222445
Q ss_pred hcChhHHHHhhHHhhccCCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 462 ASDFTKAFADLDEAEKVDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
.|++.+|+.++..+....+. +..+|+.+|.||..+|.+++|+++|++++.+.|++.+++..|+.++...|+..+|..
T Consensus 427 ~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 427 IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALE 504 (895)
T ss_pred cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Confidence 58999999999999988764 678999999999999999999999999999999999999999999999999887653
No 37
>KOG2003|consensus
Probab=99.91 E-value=1.3e-22 Score=179.19 Aligned_cols=410 Identities=16% Similarity=0.192 Sum_probs=318.4
Q ss_pred CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhc--CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-Cc
Q psy12713 56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIES--TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-DP 132 (551)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 132 (551)
+..-+-..++.+|..|-...-+.+|+..|+-+++. .|+ ....-..+|.++++..+|.+|+++|+-++..-|. +.
T Consensus 196 nldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~n---ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink 272 (840)
T KOG2003|consen 196 NLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPN---AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK 272 (840)
T ss_pred cccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCC---CceeeeeecceeeehhhHHHHHHHHHHHHhhccccch
Confidence 34446788999999999999999999999987753 454 5566778999999999999999999999998775 44
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----------
Q psy12713 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN----------- 201 (551)
Q Consensus 133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----------- 201 (551)
+.+...+.++|..+.+.| +|+.|+..|+.+++..|+.. +-+++..|++..|+-++..+.|.+.+.+-
T Consensus 273 ~~rikil~nigvtfiq~g-qy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAG-QYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecc-cchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 556778889999999999 99999999999999999654 45567788999999999999999998651
Q ss_pred ---CCCHHHHH---------------------------------------HHHHHHHH-----------------hhcCC
Q psy12713 202 ---PNFHVARA---------------------------------------QRHFVVHK-----------------MIVPG 222 (551)
Q Consensus 202 ---~~~~~~~~---------------------------------------~~~~~~~~-----------------~~~~~ 222 (551)
|++....- ..-||.-. ...+.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 11110000 00000000 02234
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
+.|+++.|++.++-.-+.+.... .+-.++..+++.+ +++..|..+-..++.++.-++.+..+.|.+.+. .|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~-ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA-NGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee-cCcHHHH
Confidence 56888888888876655554433 3456666666654 488999999999999999999999999999887 9999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcc
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPR 379 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (551)
.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++.++...++...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy--------------------- 568 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY--------------------- 568 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999888888877765554331
Q ss_pred hhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchh
Q psy12713 380 SQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQK 459 (551)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (551)
....+...+++.+.. .....|.++..+-.+ +..|
T Consensus 569 --e~led~aqaie~~~q----------------------------------~~slip~dp~ilskl----------~dly 602 (840)
T KOG2003|consen 569 --ELLEDPAQAIELLMQ----------------------------------ANSLIPNDPAILSKL----------ADLY 602 (840)
T ss_pred --HHhhCHHHHHHHHHH----------------------------------hcccCCCCHHHHHHH----------HHHh
Confidence 111222223332222 123344444333222 2225
Q ss_pred hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
-+.|+-.+|..++-......|.+.+..-++|..|....=+++|+.+|+++--+.|+-..-....+.+++..|+...|+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999888899999999998877763
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=7.7e-24 Score=192.68 Aligned_cols=264 Identities=22% Similarity=0.278 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIEST--SSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
..+..|..++..|++++|+.++.+.+... |+ +...|..+|.+....++++.|+..|++++..++.++.. +.
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~---~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~----~~ 82 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPD---DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD----YE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc----cc
Confidence 34567999999999999999997765554 66 88999999999999999999999999999988876543 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHh
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN--PNFHVARAQRHFVVHKM 218 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 218 (551)
.++.+ ...+ ++++|+..++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++...
T Consensus 83 ~l~~l-~~~~-~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 83 RLIQL-LQDG-DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccc-cccc-ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 46666 6888 99999999999987664 57778888889999999999999999987655 67788889999888877
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
|+.++|+..++++++.+|+++.+...++.++...|+++++...+.......|+++..+..+|.+++. .|++++
T Consensus 160 ------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~ 232 (280)
T PF13429_consen 160 ------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEE 232 (280)
T ss_dssp ------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHH
T ss_pred ------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-cccccc
Confidence 9999999999999999999999999999999999999999999998888889999999999999887 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
|+.++++++..+|+++..+..+|.++...|+.++|..++.+++..
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999998764
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=2.1e-20 Score=188.48 Aligned_cols=381 Identities=12% Similarity=0.040 Sum_probs=261.9
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (551)
..+..+...|+.++|+.++++++...|. ....+..+|.++...|++++|++.|+++++.+|+++... ..++..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~---~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~ 145 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNI---SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMT 145 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHH
Confidence 5666677778999999999998844444 555666668888888999999999999999998885543 457888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-----
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIV----- 220 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 220 (551)
+...+ +.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++...+..+..++....+
T Consensus 146 y~~~~-q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 146 QADAG-RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HhhcC-CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 88888 8999999999988888875554 5566666667777779999999999988888776654443322200
Q ss_pred --------------------------------CC--Chh---HHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHH
Q psy12713 221 --------------------------------PG--DRE---RVEQSLKEFRNFVDTHSNVV-------EACTLFAQVLV 256 (551)
Q Consensus 221 --------------------------------~~--~~~---~~~~A~~~~~~~~~~~~~~~-------~~~~~la~~~~ 256 (551)
.. ..+ -.+.|+..++.++...+..| .+..-.-.++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 00 111 23456666677676433322 23344555667
Q ss_pred hccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc------CCHHHHHHHHHHHHHhCC
Q psy12713 257 DQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~ 329 (551)
..|++.+++..|+...... |-...+....|..|+. .+++++|+.+|.+++...| .+......|...+...++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~-~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID-RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 7888999999998876544 2234566677888777 8999999999998887552 233445678888888999
Q ss_pred HHHHHHHHHHhccccc------------CHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhc
Q psy12713 330 LEEAVKCFNKALPLAR------------DEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLREN 397 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (551)
+++|..++++..+..| .+++............. ..++...+.+.+.+
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~--------------------~~gdl~~Ae~~le~- 441 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV--------------------ALNDLPTAQKKLED- 441 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH--------------------HcCCHHHHHHHHHH-
Confidence 9999999888877444 12222222211111000 00111122222221
Q ss_pred hhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhc
Q psy12713 398 NDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEK 477 (551)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 477 (551)
-....|++....+.. +..+...|.+.+|...++.+..
T Consensus 442 ---------------------------------l~~~aP~n~~l~~~~----------A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 442 ---------------------------------LSSTAPANQNLRIAL----------ASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred ---------------------------------HHHhCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHhh
Confidence 022344444333322 2224556999999999999999
Q ss_pred cCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHH
Q psy12713 478 VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 520 (551)
Q Consensus 478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 520 (551)
++|++..+.+.+|.++..+|++.+|.....++++..|+++.+.
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999998665
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.90 E-value=3e-20 Score=177.64 Aligned_cols=280 Identities=15% Similarity=0.147 Sum_probs=230.9
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.....+..|...+..|+++.|.+.+.++.+..|. ....+...|.+...+|+++.|..++.++.+..|++.. .+.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---~~~ 156 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---LVE 156 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch---HHH
Confidence 3456678899999999999999999999999887 7778888899999999999999999999998887642 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
...+.++...| +++.|...++.+.+..|+++.++..++.++...|++++|.+.+.+..+....++.....+..... .
T Consensus 157 ~~~a~l~l~~~-~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~-~- 233 (409)
T TIGR00540 157 IARTRILLAQN-ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE-I- 233 (409)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-H-
Confidence 33699999999 99999999999999999999999999999999999999999999999876554443321111111 0
Q ss_pred cCCChhHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHhc
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHS----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY--VHRAMLMLQAR 293 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 293 (551)
.....+..+++...+.++....| +++..+..++..+...|++++|...++++++..|++.... .......+. .
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~-~ 312 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK-P 312 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC-C
Confidence 00112455556668888888777 5899999999999999999999999999999999987532 222222244 6
Q ss_pred CCHHHHHHHHHHHHhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HhcccccCHHH
Q psy12713 294 GNVDEAIKLIEKAISIDKSCM--FAYETLGTIEVQRGRLEEAVKCFN--KALPLARDEAE 349 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~a~~~~~~~~~ 349 (551)
++.+.++..++++++..|+++ .....+|+++.+.|++++|.++|+ .+++..|++..
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 889999999999999999999 889999999999999999999999 68888888765
No 41
>KOG1174|consensus
Probab=99.90 E-value=9.2e-20 Score=159.27 Aligned_cols=391 Identities=13% Similarity=0.083 Sum_probs=282.7
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC----------
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT---------- 128 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------- 128 (551)
.+.+.-...+.++...++-+.|+....++..... .+.....++..+..-++-.++.-.+...+...
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r----~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~l 170 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR----SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEAL 170 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc----chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHH
Confidence 3677788889999999999999987766554433 34555566666655555445444444433222
Q ss_pred ---------------------CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH
Q psy12713 129 ---------------------SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 187 (551)
Q Consensus 129 ---------------------~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 187 (551)
|..++. ..-....+.++.... .+..+..++-.-....|++...+..+|.++...|++
T Consensus 171 l~l~v~g~e~~S~~m~~~~~~~~~dwl-s~wika~Aq~~~~~h-s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 171 LELGVNGNEINSLVMHAATVPDHFDWL-SKWIKALAQMFNFKH-SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHhhcchhhhhhhhhheecCCCccHH-HHHHHHHHHHHhccc-chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 222221 111223444554444 555556666666777899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHH
Q psy12713 188 EEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY 267 (551)
Q Consensus 188 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 267 (551)
.+|+..|+++..++|......-..|..+.+- |+++.-.......+........-|+.-+..++..+++..|+.+
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e------g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQE------GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhc------cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999999998888877777665555 8888888888888888877777888888888889999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 268 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
-+++|+.+|.+..++...|.++.. .|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-..+++..|.+
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999988666 8999999999999999999888999999999999999999998888888888877
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhh
Q psy12713 348 AELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSIL 427 (551)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (551)
.....+++.. +.+......+....+
T Consensus 402 A~~LtL~g~~------------------------------------------------------V~~~dp~~rEKAKkf- 426 (564)
T KOG1174|consen 402 ARSLTLFGTL------------------------------------------------------VLFPDPRMREKAKKF- 426 (564)
T ss_pred hhhhhhhcce------------------------------------------------------eeccCchhHHHHHHH-
Confidence 6544443200 000000000000000
Q ss_pred ccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHH
Q psy12713 428 NSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNL 506 (551)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 506 (551)
.+..+...|.|......... +...|.+..++..+++.+...|+ ...+..+|.++...+.+++|.+.|
T Consensus 427 -----------~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 427 -----------AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred -----------HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01111122222222222222 45569999999999999999885 678899999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHHHH
Q psy12713 507 DKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 507 ~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
..|+.+||++..+...+-.+-..
T Consensus 495 ~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 495 YKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHhcCccchHHHHHHHHHHhc
Confidence 99999999999988777665543
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=1.1e-23 Score=191.73 Aligned_cols=260 Identities=20% Similarity=0.239 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
.+|.+++..| ++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~-- 88 (280)
T PF13429_consen 13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L-- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c--
Confidence 3688888888 888888888655443 477788888888888888888888888888888877766666555533 2
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCCH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNV 296 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 296 (551)
..+++++|+..+.++.+..+ ++..+...+.++...|+++++...++++.... +.++..+..+|.++.+ .|++
T Consensus 89 ----~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~ 162 (280)
T PF13429_consen 89 ----QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-LGDP 162 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHH
T ss_pred ----cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCH
Confidence 33888888888887776553 45666677777888888888888888866544 5667778888888666 8888
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCC
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKV 376 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (551)
++|+.+++++++.+|+++.+...++.++...|+.+++...++......|+++.++..++
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la--------------------- 221 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA--------------------- 221 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH---------------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH---------------------
Confidence 88888888888888888888888888888888888877777776666555544322221
Q ss_pred CcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhh
Q psy12713 377 SPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENES 456 (551)
Q Consensus 377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (551)
T Consensus 222 -------------------------------------------------------------------------------- 221 (280)
T PF13429_consen 222 -------------------------------------------------------------------------------- 221 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
..+...|++++|+.+|+++++.+|+++.++..+|.++...|+.++|...+++++.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1144557788888888888888888888888888888888888888888887765
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=7e-21 Score=188.81 Aligned_cols=265 Identities=14% Similarity=0.098 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHh---hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC---------CchHHHHHHHHHhhcCC
Q psy12713 62 LDLLSKAKRAFE---HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS---------QSTKAIEDLTQLVEDTS 129 (551)
Q Consensus 62 ~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~ 129 (551)
..++.+|...+. .+++++|+..|+++++.+|+ ++.++..+|.++...+ ++++|+..++++++++|
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP 335 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH 335 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence 345666665443 45678899999999999998 8888888888876443 36889999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 130 VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 130 ~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
+++. ++..+|.++...| ++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+.....
T Consensus 336 ~~~~----a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 336 NNPQ----ALGLLGLINTIHS-EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred CCHH----HHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 8844 5566888888888 9999999999999999999999999999999999999999999999999998877665
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 210 QRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
.++.+++.. |++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|........++..
T Consensus 411 ~~~~~~~~~------g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 411 TKLWITYYH------TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred HHHHHHHhc------cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 556555555 88899999998888775 77788888889999899999999999988888888877788888877
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
+.. .| ++|...+++.++.....+.-......++.-.|+.+.+.-+ +++.+..
T Consensus 485 ~~~-~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQ-NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred Hhc-cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 655 55 4777777766654333332233377788888888888777 6666543
No 44
>KOG4162|consensus
Probab=99.90 E-value=8.2e-20 Score=172.08 Aligned_cols=473 Identities=13% Similarity=0.018 Sum_probs=322.2
Q ss_pred ccCCCCCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC
Q psy12713 51 LTNGDTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT 128 (551)
Q Consensus 51 l~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 128 (551)
+....++...+.........+.-..+.++++-..-..+...... ...+.++-.+.......|+++.+.+.|++++...
T Consensus 274 ~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~ 353 (799)
T KOG4162|consen 274 LFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS 353 (799)
T ss_pred ccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 44444444444444445556666667777765443333221100 1267788888889999999999999999998765
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCC---
Q psy12713 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQ-IYCLFGQYEEALRNLDKTIALNP--- 202 (551)
Q Consensus 129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~--- 202 (551)
-.. ...|..++.++...| .-..|+...+..+... |+++..+...+. |....+.+++++.+..+++....
T Consensus 354 ~~~----~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~ 428 (799)
T KOG4162|consen 354 FGE----HERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR 428 (799)
T ss_pred hhh----HHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh
Confidence 444 456777999999999 9999999999999988 777776666655 45568999999999999998432
Q ss_pred --CCHHHHHHHHHHHHHh-----hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q psy12713 203 --NFHVARAQRHFVVHKM-----IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV- 274 (551)
Q Consensus 203 --~~~~~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 274 (551)
-.+..+..+|.+|-.. .-..+.....++++.++++++.+|.|+.+.+.++.-|...++.+.|....+++++.
T Consensus 429 ~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 429 SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 1344566666666544 11112244578999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 275 DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
..+++.+|..++.++-. .+++.+|+.+.+.++...|+|.........+-...|+.++|+......+.+-.....+....
T Consensus 509 ~~~~~~~whLLALvlSa-~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSA-QKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred CCccHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 55668899999999555 99999999999999999999888888888888889999999999888877655444433333
Q ss_pred hHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCcc---------ccCcchhhHHHHh
Q psy12713 355 SLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTV---------VMDKADYTQKMTS 425 (551)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 425 (551)
... ...+.-.......+...+...........+....... .......... +.....|..+...
T Consensus 588 ~~g-------~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~-~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 588 DEG-------KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA-GSELKLPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred hhh-------hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc-ccccccCcccccCCCCchHHHHHHHHHHHHHH
Confidence 211 1111111111111122222222222222222111100 0000001000 1111222233333
Q ss_pred hhccCCccccCCCcchhhhhhhhhccchhhhch-hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHH
Q psy12713 426 ILNSNDYEIIPGDPTKTIEESEKYGNLENESGQ-KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 504 (551)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 504 (551)
+...+.....-.....+-...+.....+...|. +...|+.++|...|..++.++|+++.+...+|.++...|+..-|..
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 322221111111111122223334445555555 7788999999999999999999999999999999999999888888
Q ss_pred --HHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhh
Q psy12713 505 --NLDKTIALNPNFHVARAQRHFVWTSTLAELMAF 537 (551)
Q Consensus 505 --~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 537 (551)
.+..+++++|.|+++|+.+|.++...|+-..|.
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 999999999999999999999999999877553
No 45
>KOG1156|consensus
Probab=99.89 E-value=4.7e-19 Score=163.79 Aligned_cols=416 Identities=14% Similarity=0.131 Sum_probs=296.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.-..+|.++...+..++|...++..+.+++..|+ +.+.+...|..+..+|+-++|......++..++.+. .+|
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----vCw 78 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----VCW 78 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccCcccc----hhH
Confidence 4467899999999999999999999999999999 999999999999999999999999999999888874 367
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.++.... +|++|+++|+.|+...|+|..++..++.+..++++++.....-.+.++..|.....|...+......
T Consensus 79 Hv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~- 156 (700)
T KOG1156|consen 79 HVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL- 156 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-
Confidence 77999999999 9999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cCCChhHHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTH---SNV-----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (551)
|++..|....+...+.. |+. .........+....|.+++|.+.+..--..--+........+.+++.
T Consensus 157 -----g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 157 -----GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred -----HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHH
Confidence 99999999888877655 332 24455667777888998888887765433322334455566777666
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcccccCHHHHHHH-HhHH--HHHHHHHHHH
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALPLARDEAELSHI-YSLR--DAAIAQMKVC 367 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~-~~~~--~~~~~~~~~~ 367 (551)
.+++++|...+...+..+|++...+..+-.++..-.+--+++ ..|...-+..|........ +... ..........
T Consensus 232 -l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 232 -LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred -HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 999999999999999999999888888877776334444455 6666665555544332211 0000 0000000000
Q ss_pred HHhccc---cCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCc--cccCCCcchh
Q psy12713 368 ERYNIK---KKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDY--EIIPGDPTKT 442 (551)
Q Consensus 368 ~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 442 (551)
-.-... +.+......+..... ....+.+ .+..+.....- .....+-..
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~-------------------------Lvt~y~~~L~~~~~f~~~D~~~- 363 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEK-------------------------LVTSYQHSLSGTGMFNFLDDGK- 363 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchh-HhHHHHH-------------------------HHHHHHhhcccccCCCcccccc-
Confidence 000000 111111111111111 0001111 00111100000 000000000
Q ss_pred hhhhhhhcc-chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchH
Q psy12713 443 IEESEKYGN-LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517 (551)
Q Consensus 443 ~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 517 (551)
.+......+ .+.....+...|+++.|..+++.|+...|..++.|...|+++...|++++|..++..+.++|-.|.
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 111112222 223333367789999999999999999999999999999999999999999999999999986553
No 46
>KOG0550|consensus
Probab=99.89 E-value=7e-21 Score=166.33 Aligned_cols=278 Identities=20% Similarity=0.289 Sum_probs=241.5
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+......|..++...+|..|+..+..+++..|+ ++..|...+.++...|++++|....++.+++.|..+. .
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~ 119 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----G 119 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----c
Confidence 45677888899999999999999999999999999 8999999999999999999999999999999998765 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH------------hcC------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAE------------KVD------PNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~------------~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
....+.++...+ +..+|...++..- .+- |.-..+...-+.|+...|++++|...--..+++
T Consensus 120 ~~r~~~c~~a~~-~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 120 QLREGQCHLALS-DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred ccchhhhhhhhH-HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 444888888888 7777775554211 111 222345667789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH------------HHHHHHHHHHHhccCHHHHHHHH
Q psy12713 201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV------------EACTLFAQVLVDQEDFDGAEEYF 268 (551)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~~~~~~A~~~~ 268 (551)
++.+..+.+..+.+++.. ++.+.|+..|++++..+|+.. ..+..-|.-.++.|++.+|.+.|
T Consensus 199 d~~n~~al~vrg~~~yy~------~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYN------DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred ccchhHHHHhcccccccc------cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 999999999999777766 999999999999999999864 45677899999999999999999
Q ss_pred HHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 269 NRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 269 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
..+|.++|++ ...|.+++.+..+ .|+..+|+...+.++.++|....++...|.++..+++|++|++.|+++++..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987 4468889999777 9999999999999999999999999999999999999999999999999987
Q ss_pred cCHHHHHH
Q psy12713 345 RDEAELSH 352 (551)
Q Consensus 345 ~~~~~~~~ 352 (551)
.+ .++..
T Consensus 352 ~s-~e~r~ 358 (486)
T KOG0550|consen 352 KD-CEIRR 358 (486)
T ss_pred cc-cchHH
Confidence 66 44433
No 47
>KOG4162|consensus
Probab=99.89 E-value=8.9e-20 Score=171.85 Aligned_cols=344 Identities=17% Similarity=0.159 Sum_probs=194.9
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVN 137 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~ 137 (551)
++..+=.....+...|+|+.+.+.|++++...-. ..+.|+.++.++...|.-..|+...+...... |.++..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~--- 395 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV--- 395 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH---
Confidence 3444445566666677777777777777665554 56666666666666666666666666666655 333221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CChhHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhcC
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDP-----NVADSYYQRGQIYCLFG-----------QYEEALRNLDKTIALN 201 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~ 201 (551)
.+..-..|....+ ..++++.+..+++.... -.+.++..+|.+|..+- ...+++..++++++.+
T Consensus 396 ~Lmasklc~e~l~-~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 396 LLMASKLCIERLK-LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHhchh-hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 1111222233333 44444444444444111 11333444444433221 1234444444444444
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
|.++.+.+.++.-+... ++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.++...|+|..
T Consensus 475 ~~dp~~if~lalq~A~~------R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQ------RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred CCCchHHHHHHHHHHHH------HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 44444444444333333 4444444444444444 2223444444444444444444444444444433333211
Q ss_pred --------------------------------------------------------------------------------
Q psy12713 281 -------------------------------------------------------------------------------- 280 (551)
Q Consensus 281 -------------------------------------------------------------------------------- 280 (551)
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence
Q ss_pred -----------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 281 -----------------------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 281 -----------------------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
.|...+..+.. .++.++|..++.++-.++|..+..|+..|.++...|++.+|...|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~-~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL-SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 23333444333 566666666666666666666666666666666666666666666
Q ss_pred HHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcc
Q psy12713 338 NKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKA 417 (551)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (551)
..++.++|+++.....++.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~------------------------------------------------------------- 726 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAE------------------------------------------------------------- 726 (799)
T ss_pred HHHHhcCCCCcHHHHHHHH-------------------------------------------------------------
Confidence 6666666666553322221
Q ss_pred hhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHH--hhHHhhccCCCchHHHhhhhhHHHH
Q psy12713 418 DYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFA--DLDEAEKVDPNVADSYYQRGQIYCL 495 (551)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~ 495 (551)
.+.+.|+..-|.. .+..+++++|.++++|+.+|.++.+
T Consensus 727 ----------------------------------------~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 727 ----------------------------------------LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred ----------------------------------------HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 1334455555666 9999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHhhcCCchHH
Q psy12713 496 FGQYEEALRNLDKTIALNPNFHV 518 (551)
Q Consensus 496 ~g~~~~A~~~~~~al~~~p~~~~ 518 (551)
.|+.++|.++|..|+++.+.+|.
T Consensus 767 ~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999998874
No 48
>KOG1129|consensus
Probab=99.88 E-value=7.7e-21 Score=160.92 Aligned_cols=268 Identities=16% Similarity=0.132 Sum_probs=236.4
Q ss_pred HHHhhhcHHHHHHHHHHHhhcC---CCc----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 70 RAFEHEDYLTAIRHCTEEIEST---SSN----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~l~~~---~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
.++...|...|-..+...++.. |.. ..+..--..+|.||+++|-+.+|.+.++.+++..|. ...+..+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-----~dTfllL 262 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-----PDTFLLL 262 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-----hhHHHHH
Confidence 4556778888877776665432 211 234445568999999999999999999999998765 3456669
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
+.+|.... +...|+..+.+.+...|.+...+...+.++..++++++|.++|+.+++..|.+.++..-++..++..
T Consensus 263 skvY~rid-QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~---- 337 (478)
T KOG1129|consen 263 SKVYQRID-QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYD---- 337 (478)
T ss_pred HHHHHHhc-cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccC----
Confidence 99999999 9999999999999999999999999999999999999999999999999999999887777555555
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
++++-|+.+|++++++.-.+++.+.++|.|.+..++++-++..|++++.... .-.++|+++|.+... .|++.-|
T Consensus 338 --~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA 414 (478)
T KOG1129|consen 338 --NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLA 414 (478)
T ss_pred --CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHH
Confidence 9999999999999999999999999999999999999999999999998643 236799999999776 9999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-.+.
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 999999999999999999999999999999999999999999999986654
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.88 E-value=3.6e-19 Score=169.20 Aligned_cols=279 Identities=17% Similarity=0.164 Sum_probs=215.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.....+..|...+..|||++|.+...+.-...+. ....+...+.+....|+++.|..++.++.+..|++... ..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~---p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~---~~ 156 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ---PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP---VE 156 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH---HH
Confidence 4456788899999999999999888876665443 23334444666699999999999999999988876422 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH-FVVHKM 218 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 218 (551)
...+.++...| ++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.....+- ..+...
T Consensus 157 l~~a~l~l~~g-~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 157 ITRVRIQLARN-ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 23588999999 9999999999999999999999999999999999999999999999888766544333111 111110
Q ss_pred -hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHH
Q psy12713 219 -IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD 297 (551)
Q Consensus 219 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (551)
.......+.+...+.++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ . .++++
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~-~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--K-TNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--c-CCChH
Confidence 00111123344455555555566778999999999999999999999999999984 4455555445543 3 58999
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 298 EAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
+++..+++.++..|+++..+..+|.++...|++++|.++|+++++..|++..
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 9999999999999999999999999999999999999999999988888654
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=4.1e-20 Score=168.06 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=123.1
Q ss_pred CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q psy12713 113 QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALR 192 (551)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 192 (551)
+.+.++..+.+++...|.++......++.+|.++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG-LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44555555555555444444444445555666666666 66666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 193 NLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
.|+++++++|++..++..+|.+++.. |++++|+..++++++.+|+++... ....+....+++++|+..+.+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~------g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYG------GRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHH
Confidence 66666666666666666666555555 666666666666666666554211 11122334556777777776555
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCHHHH--HHHHH----HHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 273 RVDPENASLYVHRAMLMLQARGNVDEA--IKLIE----KAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~~A--~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
...+..... .+.+.+. .|+..++ ...+. ...+..|...++|+.+|.++...|++++|+.+|++++..+|.
T Consensus 193 ~~~~~~~~~---~~~~~~~-lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 193 EKLDKEQWG---WNIVEFY-LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hhCCccccH---HHHHHHH-ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 432222111 2223233 4444322 22222 122344555677777777777777777777777777777753
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=4.4e-20 Score=183.17 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG---------QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
.+++|+..|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|++..++..+|.++...
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~---- 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH---- 351 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----
Confidence 4667777777777777777777777777665432 367777777777777777777777777666655
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+++. .|++++|+..
T Consensus 352 --g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~ 428 (553)
T PRK12370 352 --SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRL 428 (553)
T ss_pred --cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777776665555555555 6777777777
Q ss_pred HHHHHhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 303 IEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+++++... |+++.++..+|.++...|++++|...+.++....|.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 77777664 66677777777777777777777777777666655543
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=4.6e-19 Score=169.54 Aligned_cols=199 Identities=11% Similarity=0.104 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHhhc
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKMIV 220 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 220 (551)
.|......| +++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. ......+.++...
T Consensus 90 ~glla~~~g-~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-- 166 (409)
T TIGR00540 90 EALLKLAEG-DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-- 166 (409)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC--
Confidence 344444455 555555555555555554444444555555555555555555555555544443 2333334333333
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHhcCCH
Q psy12713 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV----HRAMLMLQARGNV 296 (551)
Q Consensus 221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 296 (551)
|+++.|...++++.+..|+++.++..++.++...|++++|...+.+..+....++.... ......+. .+..
T Consensus 167 ----~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~-~~~~ 241 (409)
T TIGR00540 167 ----NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD-EAMA 241 (409)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-HHHH
Confidence 55555555555555555555555555555555555555555555555544332222111 11111111 2333
Q ss_pred HHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 297 DEAIKLIEKAISIDK----SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 334445555554444 3555666666666666666666666666666655554
No 53
>KOG1125|consensus
Probab=99.88 E-value=8e-21 Score=173.46 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=206.0
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV 136 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 136 (551)
+.-+...-|..|..+++.|+..+|.-.|+.++..+|. ++++|..||.+....++-..|+..++++++++|++ .
T Consensus 281 p~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N----l 353 (579)
T KOG1125|consen 281 PYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTN----L 353 (579)
T ss_pred cccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----H
Confidence 3345556789999999999999999999999999999 99999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH-------HHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHH
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ-------RGQIYCLFGQYEEALRNLDKTIALNP--NFHVA 207 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~ 207 (551)
.++..||.+|...| .-.+|+.++.+.+...|.....-.. ...-......+..-.+.|-.+....| .++++
T Consensus 354 eaLmaLAVSytNeg-~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 354 EALMALAVSYTNEG-LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHhhhh-hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 57777999999999 9999999999999887754211100 00001111123344556666666666 67788
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713 208 RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 287 (551)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 287 (551)
...+|.+++.. |++++|+.+|+.++...|++...|+.+|-.+....+.++|+..|++|+++.|....+++++|.
T Consensus 433 Q~~LGVLy~ls------~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 433 QSGLGVLYNLS------GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HhhhHHHHhcc------hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 88888777776 888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHhCCHHHH
Q psy12713 288 LMLQARGNVDEAIKLIEKAISIDKSC----------MFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 288 ~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A 333 (551)
.++. .|.|++|.++|-.++.+.+.+ ..+|..|-.++...++.+-+
T Consensus 507 S~mN-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 507 SCMN-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhh-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 8777 888888888888888775441 23555555555555555533
No 54
>KOG1129|consensus
Probab=99.88 E-value=2e-21 Score=164.40 Aligned_cols=244 Identities=15% Similarity=0.110 Sum_probs=226.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
-..|.++++.|-+.+|.+.++..+...| .++.+..++.+|.+..+...|+..+.+.++..|.+.. .+..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT----~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT----YLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh----hhhhhHH
Confidence 4679999999999999999999999999 7899999999999999999999999999999999844 4455999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (551)
++..++ ++++|.++|+.+++.+|.+.++.-.+|.-|+--++.+-|+.+|++.+++.-.+++.+.++|.|.+..
T Consensus 299 i~eam~-~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya------ 371 (478)
T KOG1129|consen 299 IHEAME-QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA------ 371 (478)
T ss_pred HHHHHH-hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh------
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHhCC--C-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHS--N-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 301 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~--~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 301 (551)
++++-++..|++++.... + -.++|+++|.+....|++..|..+|+-++..++++.+++.++|.+-.+ .|+.++|..
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r-~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR-SGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh-cCchHHHHH
Confidence 999999999999998653 2 368999999999999999999999999999999999999999999776 999999999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHH
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIE 324 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~ 324 (551)
+++.+-...|.-.+..++++.+-
T Consensus 451 ll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 451 LLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHhhhhCccccccccceeEEe
Confidence 99999999998877777766543
No 55
>KOG1174|consensus
Probab=99.87 E-value=1.3e-19 Score=158.40 Aligned_cols=270 Identities=16% Similarity=0.103 Sum_probs=236.9
Q ss_pred HHHHHHHHhhhcH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 65 LSKAKRAFEHEDY--LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 65 ~~~a~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
..++...+..++. .-+..++-.-...-|. +...+..+|.+++..|++++|+..|+++..++|... .+.-..
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~---NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Y 272 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRC---NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLY 272 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCc---cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHH
Confidence 3445555545544 4455556666677787 999999999999999999999999999999999874 444558
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
|..+...| +++.-.......+........-|+.-+...+..++++.|+.+-+++++.+|.+..+++..|..+..+
T Consensus 273 a~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~---- 347 (564)
T KOG1174|consen 273 AVLLGQEG-GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL---- 347 (564)
T ss_pred HHHHHhcc-CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc----
Confidence 88888999 9999988888899888888888999999999999999999999999999999999999999777777
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHhcCCHHHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNVDEAIK 301 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~A~~ 301 (551)
|+.++|+-.|+.+....|.+.+.|..+..+|...|++.+|...-+.++...|.+...+..+| .+++..-.--++|..
T Consensus 348 --~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 --ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred --cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998886 554443445688999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
++++++.+.|....+-..++.++...|.+++++..+++.+...|+..
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~ 472 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN 472 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999999888753
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=2e-19 Score=163.54 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=188.4
Q ss_pred hhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC
Q psy12713 74 HEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD 152 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 152 (551)
.+..+.++..+.+++...|.+ ...+..++.+|.++...|++++|+..|+++++.+|+++ .++..+|.++...| +
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g-~ 113 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAG-N 113 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCC-C
Confidence 357788999999999755432 23578899999999999999999999999999999984 46777999999999 9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 232 (551)
+++|+..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++...... .+....+++++|+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-------~l~~~~~~~~~A~~ 186 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-------YLAESKLDPKQAKE 186 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987421111 11223478999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHH--HHHHHH----HHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA--EEYFNR----SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A--~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
.+.+.....+... |. .+.+....|+...+ ...+.+ ..+..|..+.+|+.+|.++.. .|++++|+.+|+++
T Consensus 187 ~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~-~g~~~~A~~~~~~A 262 (296)
T PRK11189 187 NLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS-LGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 9988775543322 22 35555566766443 322222 234556677899999999776 99999999999999
Q ss_pred HhcCc-CCHHHHHHHHHHHHHhCC
Q psy12713 307 ISIDK-SCMFAYETLGTIEVQRGR 329 (551)
Q Consensus 307 ~~~~~-~~~~~~~~l~~~~~~~g~ 329 (551)
++.+| +..+..+.+..+....++
T Consensus 263 l~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 263 LANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHhCCchHHHHHHHHHHHHHHHhh
Confidence 99996 556666666666555443
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.3e-18 Score=146.02 Aligned_cols=286 Identities=13% Similarity=0.102 Sum_probs=244.3
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
.+.-|..|..++-..+.++|+..|-.+++.+|. ..++...+|..+...|..+.|+..-+..+....-...-...++.
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445677899999999999999999999999998 99999999999999999999999998887754333444566889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-h
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-I 219 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 219 (551)
.+|.-|+..| -++.|...|........--..+...+..+|....+|++|++..++..++.+......+ +..+..+ .
T Consensus 112 qL~~Dym~aG-l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--AqfyCELAq 188 (389)
T COG2956 112 QLGRDYMAAG-LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--AQFYCELAQ 188 (389)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--HHHHHHHHH
Confidence 9999999999 9999999999988765556789999999999999999999999999999887654332 2222222 4
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 298 (551)
.+....+.+.|+..+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|+. +.+.-.+..+|-+ .|+.++
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~ 267 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE 267 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence 44455899999999999999999999999999999999999999999999999999987 4566677777655 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
.+..+.++.+..++ +.+-..++.+-....-.+.|..++.+-+...|+-.....+.
T Consensus 268 ~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 268 GLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 99999999998887 56777788888888888999999999999999876655444
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=3.6e-19 Score=144.09 Aligned_cols=211 Identities=18% Similarity=0.198 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 133 KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 133 ~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
.....+.+.+|..|+..| ++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|
T Consensus 32 ~~aa~arlqLal~YL~~g-d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 32 NEAAKARLQLALGYLQQG-DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 344567777899999999 9999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 213 FVVHKMIVPGDRERVEQSLKEFRNFVDT--HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290 (551)
Q Consensus 213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (551)
..+... |++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++
T Consensus 111 ~FLC~q------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 111 AFLCAQ------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred HHHHhC------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 544444 8999999999998874 35567889999999999999999999999999999999999999999988
Q ss_pred HhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 291 QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
. .|++-.|..++++.....+-....+.....+-...|+-+.|-++=.+.....|...+..
T Consensus 185 ~-~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 185 K-AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred h-cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 7 89999999999999888888888888888899999999999998888888888877653
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=3.5e-18 Score=162.51 Aligned_cols=281 Identities=10% Similarity=0.032 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhh
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR-GQIYCLFGQYEEALRNLDKTIALNPNFHVAR-AQRHFVVHKMI 219 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 219 (551)
.|......| ++++|.+...+.-...+ ++..++.+ +......|+++.|..++.++.+..|++.... ...+..+...
T Consensus 90 ~gl~a~~eG-d~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~- 166 (398)
T PRK10747 90 QALLKLAEG-DYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR- 166 (398)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-
Confidence 444444455 66666655554433322 23333333 4444666666666666666666655553222 2224333333
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH--------HHHHHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV--------HRAMLMLQ 291 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~ 291 (551)
|++++|...++++.+..|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+......
T Consensus 167 -----g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 167 -----NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred -----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666665555444332111 11111011
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN 371 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (551)
..+.+.....++......|+++.+...++..+...|+.++|.+.++++++..|+ +.+...+..
T Consensus 242 -~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~--------------- 304 (398)
T PRK10747 242 -DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPR--------------- 304 (398)
T ss_pred -hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhh---------------
Confidence 222333333344333344556667777777777777777777777777664333 222111110
Q ss_pred cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN 451 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (551)
T Consensus 305 -------------------------------------------------------------------------------- 304 (398)
T PRK10747 305 -------------------------------------------------------------------------------- 304 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL 531 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 531 (551)
...++++++++..++.++.+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.+.|
T Consensus 305 --------l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g 375 (398)
T PRK10747 305 --------LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLH 375 (398)
T ss_pred --------ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcC
Confidence 01145666777777777777777777777777777777777777777777777776644 445666666666
Q ss_pred hhhhh
Q psy12713 532 AELMA 536 (551)
Q Consensus 532 ~~~~a 536 (551)
+..+|
T Consensus 376 ~~~~A 380 (398)
T PRK10747 376 KPEEA 380 (398)
T ss_pred CHHHH
Confidence 66555
No 60
>KOG0550|consensus
Probab=99.86 E-value=5.4e-20 Score=160.84 Aligned_cols=290 Identities=18% Similarity=0.246 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
++-....|..+++..+|.+|+..+..+++..|++ +..|.+.+.+++..+ ++++|....++.+++.|..+..+...
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~----a~yy~nRAa~~m~~~-~~~~a~~dar~~~r~kd~~~k~~~r~ 123 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN----ASYYSNRAATLMMLG-RFEEALGDARQSVRLKDGFSKGQLRE 123 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc----hhhhchhHHHHHHHH-hHhhcccchhhheecCCCccccccch
Confidence 3444555556666666666666666666666655 334444666666666 66666666666666666666666666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC---CCcHHHHHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH---SNVVEACTLFAQV 254 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~ 254 (551)
+.++...++..+|...++ +..+ +....|+..+++.+..+ |....+-..-+.+
T Consensus 124 ~~c~~a~~~~i~A~~~~~--------~~~~-----------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLK--------SKQA-----------------YKAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred hhhhhhhHHHHHHHHHhh--------hhhh-----------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 666666666555555554 0000 11122233333333222 3334566677899
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH------------HHHHHHHH
Q psy12713 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM------------FAYETLGT 322 (551)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~ 322 (551)
+...|++++|...--..+++++.+..+++..|.+++. .++.+.|+..|++++.++|++. ..+..-|.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999777 9999999999999999999863 45667889
Q ss_pred HHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhc
Q psy12713 323 IEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIII 402 (551)
Q Consensus 323 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (551)
-.++.|++..|.+.|..++.++|++......+.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY----------------------------------------------- 290 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY----------------------------------------------- 290 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHH-----------------------------------------------
Confidence 999999999999999999999999765322211
Q ss_pred cccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCc
Q psy12713 403 RPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNV 482 (551)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (551)
++++.....+|+..+|+..++.+++++|..
T Consensus 291 --------------------------------------------------~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 291 --------------------------------------------------GNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred --------------------------------------------------HHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 111222445589999999999999999999
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 515 (551)
..++...|.|+..+++|++|++.|+++.+...+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999998766
No 61
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=3.4e-18 Score=175.85 Aligned_cols=388 Identities=12% Similarity=0.029 Sum_probs=265.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+...+-.....+...++++.|..++..+....-. .+...+..+..+|.+.|++++|.+.|++..+ |+ ..+|
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~-----~~t~ 192 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RN-----LASW 192 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CC-----eeeH
Confidence 3444555555556666666666666666554321 1455566666666666666666666666543 21 2244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------------------------CCChhHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVD------------------------------------PNVADSYYQRGQIYCL 183 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~la~~~~~ 183 (551)
..+...|.+.| ++++|+..|+++.... ..+..++..+...|.+
T Consensus 193 n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k 271 (697)
T PLN03081 193 GTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271 (697)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH
Confidence 44666666666 6666666666665432 1234466778899999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHH
Q psy12713 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFD 262 (551)
Q Consensus 184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 262 (551)
.|++++|...|++.. +.+...|..+...+... |++++|+..|+++.... ..+...+..+...+.+.|+++
T Consensus 272 ~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~------g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 272 CGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH------GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred CCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence 999999999998764 45677788888666666 99999999999987653 335668889999999999999
Q ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 263 GAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 263 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
+|.+.+..+++.. +.+..++..+...|.+ .|++++|...|+++.+ .+..+|..+...|.+.|+.++|++.|++..
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSK-WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHH-CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998875 5566778888888777 9999999999998754 356789999999999999999999999987
Q ss_pred c--cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchh
Q psy12713 342 P--LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADY 419 (551)
Q Consensus 342 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (551)
+ ..|+.......+..+.. .+..+.+.+.+..-..
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~------------------------~g~~~~a~~~f~~m~~-------------------- 454 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRY------------------------SGLSEQGWEIFQSMSE-------------------- 454 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhc------------------------CCcHHHHHHHHHHHHH--------------------
Confidence 6 45665543333322200 0001111111111000
Q ss_pred hHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCH
Q psy12713 420 TQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY 499 (551)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 499 (551)
.....| ...........+...|++++|.+.+++.- ..| +..+|..+...+...|+.
T Consensus 455 -----------~~g~~p-----------~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 455 -----------NHRIKP-----------RAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNL 510 (697)
T ss_pred -----------hcCCCC-----------CccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCc
Confidence 000000 00111112223566788999999887652 334 456788888889999999
Q ss_pred HHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 500 EEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 500 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
+.|...+++.+++.|++...|..+..+|...|+..+|..
T Consensus 511 ~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999999998899999999999888776654
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=8.2e-19 Score=156.50 Aligned_cols=201 Identities=20% Similarity=0.245 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
...+..+|.++...| ++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+...+..++.++
T Consensus 31 ~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQG-DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456667777787777 8888888888887777777777777888888888888888888888877777777777777666
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTH--SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 293 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 293 (551)
... |++++|+..+++++... +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.+++. .
T Consensus 110 ~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~ 182 (234)
T TIGR02521 110 CQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-R 182 (234)
T ss_pred HHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-c
Confidence 665 78888888888877643 44566788889999999999999999999999999888888899988777 8
Q ss_pred CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 294 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 294 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
|++++|...+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999988888888888888999999999999988887766543
No 63
>KOG1125|consensus
Probab=99.85 E-value=6e-20 Score=167.82 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=206.2
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 181 (551)
+..|..+++.|+..+|.-.|+.+++.+|.+ +.+|..||.+....+ +-..|+..++++++++|++.+++..||..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h----aeAW~~LG~~qaENE-~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH----AEAWQKLGITQAENE-NEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH----HHHHHHhhhHhhhcc-chHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 567999999999999999999999999998 778888999999999 999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhc
Q psy12713 182 CLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVDQ 258 (551)
Q Consensus 182 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~ 258 (551)
...|.-.+|+.++.+=+...|........--...... ........+..-.+.|-.+....| .++++...||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 9999999999999999887765432111000000000 012233456667778888888888 7899999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 259 EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
|+|++|+.+|+.++...|++...|..+|..+.. ..+..+|+..|++++++.|....++++||..+..+|.|++|+++|-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999554 7889999999999999999999999999999999999999999999
Q ss_pred HhcccccC
Q psy12713 339 KALPLARD 346 (551)
Q Consensus 339 ~a~~~~~~ 346 (551)
.|+.+.+.
T Consensus 523 ~AL~mq~k 530 (579)
T KOG1125|consen 523 EALSMQRK 530 (579)
T ss_pred HHHHhhhc
Confidence 99998765
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=8.1e-19 Score=142.04 Aligned_cols=209 Identities=17% Similarity=0.129 Sum_probs=186.4
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
......+.+|..|+..|++..|...++++|+.+|+ ...+|..++.+|...|+.+.|.+.|+++++++|++.+ +
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd----V 105 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD----V 105 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----h
Confidence 35688899999999999999999999999999999 9999999999999999999999999999999999955 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
+.+.|..++.+| ++++|...|++++.. .|..+..+-++|.|..+.|+++.|..+|+++++++|+.+.....++..++
T Consensus 106 LNNYG~FLC~qg-~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 106 LNNYGAFLCAQG-RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hhhhhHHHHhCC-ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 566999999999 999999999999974 45567899999999999999999999999999999999999999997777
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (551)
.. |++..|...+++.....+-..+.+....++-...|+-+.+-.+=.+.....|.....
T Consensus 185 ~~------~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 185 KA------GDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hc------ccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 77 999999999998888888777887777888888898888888877777788877654
No 65
>KOG1127|consensus
Probab=99.84 E-value=4e-18 Score=164.57 Aligned_cols=407 Identities=14% Similarity=0.061 Sum_probs=285.5
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
.+...|...|-+++.+++.- ..++..+|.+|.... +...|..+|.++.++++.+..++-..+..|....+++.|.
T Consensus 472 K~~~~al~ali~alrld~~~----apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSL----APAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHH
Confidence 45778999999999998876 456777999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 192 RNLDKTIALNPNFH--VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 192 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
.....+-+..|... ..|..+| ..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG------~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRG------PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhcc------ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99777777666432 3444556 556666999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 270 RSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
++..++|.+....+..+.+... .|+|.+|+..+...+...... .+.+.+++..+...|=...|..++++.++
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd-~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECD-NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999998888888555 999999999999888765433 45556666666666777777777777665
Q ss_pred cc--------cCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCC--cc
Q psy12713 343 LA--------RDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGK--TV 412 (551)
Q Consensus 343 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 412 (551)
.. -++.-.|...+.......+.... .+......+..........++++ +++..-...... ..
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~-------~vn~h~l~il~~q~e~~~~l~~~-d~l~Lg~~c~~~hlsl 771 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPS-------IVNMHYLIILSKQLEKTGALKKN-DLLFLGYECGIAHLSL 771 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhccc-------chHHHHHHHHHHHHHhcccCcch-hHHHHHHHHhhHHHHH
Confidence 32 22233333333222222222100 00000000000000000000000 000000000000 00
Q ss_pred ccCcchhhHHHHhhhccC--------CccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchH
Q psy12713 413 VMDKADYTQKMTSILNSN--------DYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVAD 484 (551)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 484 (551)
......|...+.++++.- +...+.......+.+...-..+++..|..-..|++.-|..+|-+.+..+|....
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchh
Confidence 111112222222222210 001112222344555555566777777776779999999999999999999999
Q ss_pred HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 485 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
.|.++|.++.+..+++-|...|.++..++|.|...|...+.+....|+-.++..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~ 905 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLI 905 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997665543
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=4e-18 Score=152.03 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=140.8
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+..++..|..++..|++++|+..+++++..+|. +..++..+|.++...|++++|+..+++++...|.++. +
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----V 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----H
Confidence 34677777888888888888888888888888777 7777778888888888888888888888887776643 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVH 216 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 216 (551)
+..+|.++...| ++++|+..+++++... +.....+..+|.++...|++++|...+.+++...|++...+..++.++.
T Consensus 102 ~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQG-KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcc-cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 555777888888 8888888888877643 3445566677777777777777777777777777766666666665555
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
.. |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 181 ~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 181 LR------GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred Hc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 54 6666666666666666555555555666666666666666655554443
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=4.3e-16 Score=162.01 Aligned_cols=394 Identities=11% Similarity=0.032 Sum_probs=289.6
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
.+...++..-..+.+.|++++|+.+|+.+...+.- +.+...+..+...+...|..++|...++.... |+ ...
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv-~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-----~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL-DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-----LST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-----HHH
Confidence 45666666667778899999999999998876532 11444555566677889999999999887754 32 346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVH 216 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~ 216 (551)
|..+-..+...| +++.|...++.+.+... .+...|..+...|.+.|+.++|.+.|+++.+... .+...|..+...+.
T Consensus 440 yn~LL~a~~k~g-~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQ-DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 667888889999 99999999999987653 3578899999999999999999999999987653 35677777776666
Q ss_pred HhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENASLYVHRAMLMLQ 291 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 291 (551)
+. |++++|+..|.++.... ..+...|..+...+.+.|++++|.+.+.++... .|+ ...+..+...|.+
T Consensus 519 k~------G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k 591 (1060)
T PLN03218 519 RA------GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN 591 (1060)
T ss_pred HC------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 66 99999999999997654 234678999999999999999999999998753 444 5667777777666
Q ss_pred hcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc--ccCHHHHHHHHhHHHHHHHHHHHHH
Q psy12713 292 ARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL--ARDEAELSHIYSLRDAAIAQMKVCE 368 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (551)
.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|...|++.... .|+.......+... ..
T Consensus 592 -~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~---~k------ 661 (1060)
T PLN03218 592 -AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GH------ 661 (1060)
T ss_pred -CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh------
Confidence 999999999999999876 456789999999999999999999999998875 56533221111110 00
Q ss_pred HhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhh
Q psy12713 369 RYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEK 448 (551)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (551)
.+....+.+.+..-.. .... +.
T Consensus 662 ---------------~G~~eeA~~l~~eM~k--------------------------------~G~~-----------pd 683 (1060)
T PLN03218 662 ---------------AGDLDKAFEILQDARK--------------------------------QGIK-----------LG 683 (1060)
T ss_pred ---------------CCCHHHHHHHHHHHHH--------------------------------cCCC-----------CC
Confidence 0011111111111000 0000 11
Q ss_pred hccchhhhchhhhhcChhHHHHhhHHhhcc--CCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc--CCchHHHHHHHH
Q psy12713 449 YGNLENESGQKHAASDFTKAFADLDEAEKV--DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFHVARAQRH 524 (551)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~ 524 (551)
..........|...|++++|+..|++..+. .| +...|..+...|.+.|++++|++.|++.... .|+. ..+..+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL 761 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Confidence 111222334488899999999999988654 45 5778999999999999999999999988754 4554 4566666
Q ss_pred HHHHHhhhhhhhhh
Q psy12713 525 FVWTSTLAELMAFS 538 (551)
Q Consensus 525 ~~~~~~~~~~~a~~ 538 (551)
..+.+.|+..+|..
T Consensus 762 ~a~~k~G~le~A~~ 775 (1060)
T PLN03218 762 VASERKDDADVGLD 775 (1060)
T ss_pred HHHHHCCCHHHHHH
Confidence 78887777665543
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=2.6e-16 Score=163.67 Aligned_cols=256 Identities=11% Similarity=0.036 Sum_probs=152.0
Q ss_pred HHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
.+...|..++|..+|+.... | +...+..+-.++...|++++|...++++.+..... . ...+..+...|.+.
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~--p----d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p-D--~~tynsLI~~y~k~ 485 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN--P----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA-D--CKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC--C----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHhC
Confidence 34455666666666665543 4 34556666666666677777777766666543321 1 22445566666666
Q ss_pred cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 150 ASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-NFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
| +.++|...|+++..... .+...|..+...|.+.|++++|+..|.++....- .+...+..+...+.+. |++
T Consensus 486 G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~------G~~ 558 (1060)
T PLN03218 486 G-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS------GAV 558 (1060)
T ss_pred c-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC------CCH
Confidence 6 67777776666665432 2456666666666667777777766666654321 2344455555444444 666
Q ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTH---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLI 303 (551)
Q Consensus 228 ~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 303 (551)
++|.+.+.++.... ..+...+..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+ .|++++|+.+|
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf 637 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 77777666665421 1234556666666666677777777766666654 3344555556655454 66677777776
Q ss_pred HHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 304 EKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 304 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
.++.+. .|+ ...|..+...+.+.|++++|.+.++.+.+.
T Consensus 638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 666654 233 556666666666667777777666666553
No 69
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=8.2e-17 Score=169.79 Aligned_cols=385 Identities=12% Similarity=0.040 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
...+......+...|+.+.|.+++..+++..-. .+..++..+...|.+.|++++|.+.|++... | + ..+|.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d----~~s~n 358 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K-D----AVSWT 358 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----eeeHH
Confidence 334444444455555666666655555544321 1445555555556666666666666555432 1 1 11334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN-FHVARAQRHFVVHK 217 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 217 (551)
.+...|.+.| ++++|+..|+++.... |+ ...+..+-..+...|++++|.+.+..+.+.... +...+..+...+.+
T Consensus 359 ~li~~~~~~g-~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 359 AMISGYEKNG-LPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 4555555555 6666666665554332 32 223333334455555555555555555544321 22333333333333
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC------------------
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PEN------------------ 278 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~------------------ 278 (551)
. |++++|.+.|+++.+ .+...|..+...|.+.|+.++|+..|++..... |+.
T Consensus 437 ~------g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 437 C------KCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred c------CCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHH
Confidence 3 555555555554322 223345555555555555555555555554321 221
Q ss_pred ----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 279 ----------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 279 ----------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
......+...|.+ .|+.++|...|+.. +.+..+|..+...|...|+.++|++.|++..+
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k-~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVR-CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHH-cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222334455444 78888888888775 45677888888888888888888888887765
Q ss_pred --cccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhh
Q psy12713 343 --LARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYT 420 (551)
Q Consensus 343 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (551)
..|+.......+..+.. . +..+.++..+..-..
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~---~---------------------g~v~ea~~~f~~M~~--------------------- 617 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSR---S---------------------GMVTQGLEYFHSMEE--------------------- 617 (857)
T ss_pred cCCCCCcccHHHHHHHHhh---c---------------------ChHHHHHHHHHHHHH---------------------
Confidence 35665443333221100 0 011111111111000
Q ss_pred HHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHH
Q psy12713 421 QKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 500 (551)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 500 (551)
..... +...........+...|++++|.+.+++. ...|+ +.+|..+-..+...|+.+
T Consensus 618 ----------~~gi~-----------P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 618 ----------KYSIT-----------PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVE 674 (857)
T ss_pred ----------HhCCC-----------CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH
Confidence 00000 11111112222366679999999999886 35564 667777777888899999
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 501 EALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 501 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
.|....+++++++|++...+..++.+|...|++.++..
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999888776553
No 70
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.5e-17 Score=150.31 Aligned_cols=205 Identities=15% Similarity=0.150 Sum_probs=126.0
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH--HH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQY--EE 189 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~ 189 (551)
++.++|+..+.+++.++|++ ..+|..++.++..+|.++++++..+++++..+|++..+|..++.++...|.. ++
T Consensus 51 e~serAL~lt~~aI~lnP~~----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGN----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCHHHHHHHHHHHHHCchh----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 34455556666666666655 3344445555555552246666666666666666666666666666555542 45
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc---cCH----H
Q psy12713 190 ALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDF----D 262 (551)
Q Consensus 190 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~----~ 262 (551)
++.+++++++.+|++..+|..++.++... |+++++++.+.++++.+|.+..+|+..+.++... |.+ +
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTL------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 56666666666666666666666555555 6666666666666666666666666666665544 222 3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 263 GAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
+++.+..+++..+|++..+|..++.++... .++..+|+..+.+++...|.++.++..++.++..
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 566666677777777777777777663320 2344567777777777777777777777777765
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=7.6e-17 Score=165.91 Aligned_cols=360 Identities=12% Similarity=0.033 Sum_probs=268.0
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC-------
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD------- 131 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------- 131 (551)
+++..+-.....+.+.|++++|..+|+++.+ | +...|..+...|.+.|++++|+..|+++....+..
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 229 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV 229 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH
Confidence 3556666677788888888888888887754 3 45577788888888888888888888876532110
Q ss_pred -------------------------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 132 -------------------------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 132 -------------------------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
......++..+...|.+.| ++++|...|+.. .+.+..+|..+...|.+.|+
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC
Confidence 0001235566889999999 999999999876 34578899999999999999
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccCHHHH
Q psy12713 187 YEEALRNLDKTIALN-PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 187 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 264 (551)
+++|+..|++..+.. ..+...+..+...+... |++++|.+.+..+++.. +.+..++..+...|.+.|++++|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~------g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL------ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 999999999987643 22455666666555555 99999999999999876 56678899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 265 EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
...|++..+ .+...|..+...|.+ .|+.++|++.|+++.+. .| +..++..+...+...|..++|.++|+...+
T Consensus 380 ~~vf~~m~~---~d~~t~n~lI~~y~~-~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 380 RNVFDRMPR---KNLISWNALIAGYGN-HGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHhCCC---CCeeeHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999998764 356678888888777 99999999999998865 34 477888899999999999999999999875
Q ss_pred c---ccCHHH---HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCc
Q psy12713 343 L---ARDEAE---LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDK 416 (551)
Q Consensus 343 ~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (551)
. .|+... +...+... +..+.+.+.+.+
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~---------------------------G~~~eA~~~~~~-------------------- 487 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGRE---------------------------GLLDEAYAMIRR-------------------- 487 (697)
T ss_pred hcCCCCCccchHhHHHHHHhc---------------------------CCHHHHHHHHHH--------------------
Confidence 3 344221 11111111 111122222111
Q ss_pred chhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh
Q psy12713 417 ADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 496 (551)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 496 (551)
.+..+ ....+......+...|+++.|...+++.++..|++...|..++.+|...
T Consensus 488 ------------------~~~~p--------~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 488 ------------------APFKP--------TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred ------------------CCCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 00001 1111122223356679999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhhc
Q psy12713 497 GQYEEALRNLDKTIAL 512 (551)
Q Consensus 497 g~~~~A~~~~~~al~~ 512 (551)
|++++|.+.++...+.
T Consensus 542 G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 542 GRQAEAAKVVETLKRK 557 (697)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999987754
No 72
>KOG1156|consensus
Probab=99.81 E-value=4.8e-16 Score=144.16 Aligned_cols=397 Identities=15% Similarity=0.122 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.-.+++..+.-.+..++|...++..+.+++..|++++..+. .|..+..+| +.++|......++..++.+...|..
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm----kGL~L~~lg-~~~ea~~~vr~glr~d~~S~vCwHv 80 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAM----KGLTLNCLG-KKEEAYELVRLGLRNDLKSHVCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh----ccchhhccc-chHHHHHHHHHHhccCcccchhHHH
Confidence 45567777888889999999999999999999999765444 999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+|.++....+|++|+++|+.|+.+.|++...+..++....++ ++++.....-.+.++..|..-..|...+..+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888 99999999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcC---CCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 257 DQEDFDGAEEYFNRSIRVD---PENA-----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
..|++..|...++...+.. |+.. ........+... .|.+++|.+.+..--...-+........|.++.++|
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999988877654 3322 233334444344 788899988887654444444556678899999999
Q ss_pred CHHHHHHHHHHhcccccCHHHHHHHHhHHHH-HHHHHHHH-HHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccC
Q psy12713 329 RLEEAVKCFNKALPLARDEAELSHIYSLRDA-AIAQMKVC-ERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPAD 406 (551)
Q Consensus 329 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (551)
++++|...|...+..+|++......+..+.- ........ ..+.......++....
T Consensus 234 ~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p----------------------- 290 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP----------------------- 290 (700)
T ss_pred hHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-----------------------
Confidence 9999999999999999998876554433311 11111111 0011100000000000
Q ss_pred CCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhcc--------
Q psy12713 407 KGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKV-------- 478 (551)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 478 (551)
.......++...+...+..++...--...|... ....+.+..-.. ..=.++=+..|...+.-
T Consensus 291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k-------~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEK-------VAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhH-------hHHHHHHHHHHHhhcccccCCCccc
Confidence 000000111122222222222111000001000 000000000000 00011111111111111
Q ss_pred -----CCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 479 -----DPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 479 -----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
.|. -.+.++.++.-+...|+++.|..+...|+..-|+-.+.+...|.++...|+..+|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 121 345678899999999999999999999999999999999999999999887665543
No 73
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=8e-17 Score=145.57 Aligned_cols=213 Identities=11% Similarity=0.055 Sum_probs=186.4
Q ss_pred HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
+...+.+++|+..+.++++.+|. +..+|..++.++..+| ++++++..+++++..+|++. .+|..++.++...
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l 119 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKL 119 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHc
Confidence 45577999999999999999999 9999999999999998 68999999999999999984 4667789888888
Q ss_pred cCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-CChhH
Q psy12713 150 ASDF--TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP-GDRER 226 (551)
Q Consensus 150 ~~~~--~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 226 (551)
| +. ++++.+++++++.+|++..+|..++.++...|+++++++++.++++.+|.+..+|..++.+....... .....
T Consensus 120 ~-~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 G-PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred C-chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 8 74 78899999999999999999999999999999999999999999999999999999999776543000 01112
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (551)
.++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++-.++.++..
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3578899999999999999999999999988 4566789999999999999999999999998654
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=7.7e-16 Score=130.90 Aligned_cols=239 Identities=14% Similarity=0.189 Sum_probs=208.2
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHH
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQ 176 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~ 176 (551)
+..|.-+.-.++.++|+..|..+++.+|.. ..+.+.+|..+...| ..+.|+..-+..+. .|+. ..+...
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t----~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~-spdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPET----FEAHLTLGNLFRSRG-EVDRAIRIHQTLLE-SPDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchh----hHHHHHHHHHHHhcc-hHHHHHHHHHHHhc-CCCCchHHHHHHHHH
Confidence 556777888899999999999999988877 556677999999999 99999998876654 4554 357889
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc-----HHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV-----VEACTLF 251 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l 251 (551)
+|.-|+..|-++.|...|........--..+...+..+|-.. .+|++|++.-++..+..+.. +..+..+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 999999999999999999999876665666777777555555 99999999999999988776 4578889
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHhCCH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRGRL 330 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 330 (551)
+..+....+.+.|+..+.++++.+|.+..+-..+|.+.+. .|+++.|++.++.+++.+|.. +++...+..+|...|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999888 999999999999999999987 77888999999999999
Q ss_pred HHHHHHHHHhcccccCHHHHHHH
Q psy12713 331 EEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 331 ~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
++....+.++.+..++.......
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~l~l 288 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAELML 288 (389)
T ss_pred HHHHHHHHHHHHccCCccHHHHH
Confidence 99999999999988776544333
No 75
>KOG1127|consensus
Probab=99.80 E-value=3.5e-17 Score=158.24 Aligned_cols=439 Identities=14% Similarity=0.059 Sum_probs=281.9
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH----------------------H
Q psy12713 80 AIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV----------------------N 137 (551)
Q Consensus 80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------~ 137 (551)
|..+|+.++..++. + ....|.+......|..|...+........+++...- .
T Consensus 387 as~~Ydn~lSaD~s---n---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~ 460 (1238)
T KOG1127|consen 387 ASICYDNALSADAS---N---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECEN 460 (1238)
T ss_pred HHHHHHHhhcCChh---h---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHH
Confidence 34444444444443 2 444555666666777777777666655422221100 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
.++..+..+ .+. +...|...|-++++++|..+.++..+|.+|...-+...|..+|+++.++++.+..++...+..+..
T Consensus 461 ~~~w~a~~~-~rK-~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 461 SEFWVALGC-MRK-NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHH-hhh-hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence 111112222 234 688899999999999999999999999999999999999999999999999999999888855554
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
. .+++.|.......-+..|.. ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|.. .|+
T Consensus 539 ~------~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGr 611 (1238)
T KOG1127|consen 539 E------STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGR 611 (1238)
T ss_pred c------ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCc
Confidence 4 99999999977766666654 35667799999999999999999999999999999999999999888 999
Q ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (551)
+..|++.|.++..++|.+..+.+..+.+....|++.+|+..+...+............++.+-.-.+..... -+....
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~--~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI--TGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHhhh
Confidence 999999999999999999999999999999999999999999998876554433322222221111111111 111111
Q ss_pred CCcchhhhhHHHHHHHHHH-hhchhhhccccCCCCCccccCcc----hhhHHHHh-hhccCCc---c---ccCCCcchhh
Q psy12713 376 VSPRSQNITKNEKLAIKQL-RENNDIIIRPADKGGKTVVMDKA----DYTQKMTS-ILNSNDY---E---IIPGDPTKTI 443 (551)
Q Consensus 376 ~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~---~---~~~~~~~~~~ 443 (551)
.....+.........+... ..+...+.-..+...-.....+. .+...... ....... + .........+
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 1112222222222222221 11110000000000000000000 00000000 0000000 0 0000001111
Q ss_pred hhhhhhccchhhhchhhh--------hcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCc
Q psy12713 444 EESEKYGNLENESGQKHA--------ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 515 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 515 (551)
........+++.+..++. ..+-..|+.++.++++++.++...|..||.+ -..|++.-|..+|-+.+..+|.
T Consensus 770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 111122223333322221 2334579999999999999999999999999 6669999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhh
Q psy12713 516 FHVARAQRHFVWTSTLAELMA 536 (551)
Q Consensus 516 ~~~a~~~l~~~~~~~~~~~~a 536 (551)
+..+|.++|.++.+..+..-|
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred chhheeccceeEEecccHHHh
Confidence 999999999998876665544
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=5.5e-16 Score=163.56 Aligned_cols=357 Identities=11% Similarity=0.029 Sum_probs=231.1
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIK 135 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 135 (551)
.+++..+......+.+.|++++|..+|+++.. | +...|..+...|.+.|++++|+..|+++... .|+..
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~--- 390 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI--- 390 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce---
Confidence 34667777888888999999999999988653 2 4557888888999999999999999987664 34432
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP-NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 214 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 214 (551)
.+..+-..+...| +++.|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 391 --t~~~ll~a~~~~g-~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~ 464 (857)
T PLN03077 391 --TIASVLSACACLG-DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAG 464 (857)
T ss_pred --eHHHHHHHHhccc-hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHH
Confidence 2222444556666 67777777766665532 2345566666666666777777666665433 233344444444
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHhCCCc-----------------------------------HHHHHHHHHHHHhcc
Q psy12713 215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNV-----------------------------------VEACTLFAQVLVDQE 259 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~la~~~~~~~ 259 (551)
+... |+.++|+..|+++....+.+ ......+...|.+.|
T Consensus 465 ~~~~------g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 465 LRLN------NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHC------CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 4333 66666666666665432222 122334557788888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 260 DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DKSCMFAYETLGTIEVQRGRLEEAVKCF 337 (551)
Q Consensus 260 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 337 (551)
+.++|...|+.. +.+...|..+...|.. .|+.++|++.|+++.+. .|+ ..++..+-..+.+.|+.++|..+|
T Consensus 539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 539 RMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHH
Confidence 888888888775 4567778888888666 89999999999988764 344 556777777888889999999999
Q ss_pred HHhccc---ccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCcccc
Q psy12713 338 NKALPL---ARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVM 414 (551)
Q Consensus 338 ~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 414 (551)
+...+. .|+... .-......... +..+++.+.+.+
T Consensus 613 ~~M~~~~gi~P~~~~---y~~lv~~l~r~---------------------G~~~eA~~~~~~------------------ 650 (857)
T PLN03077 613 HSMEEKYSITPNLKH---YACVVDLLGRA---------------------GKLTEAYNFINK------------------ 650 (857)
T ss_pred HHHHHHhCCCCchHH---HHHHHHHHHhC---------------------CCHHHHHHHHHH------------------
Confidence 887743 343211 11111000000 011111111111
Q ss_pred CcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHH
Q psy12713 415 DKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 494 (551)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 494 (551)
.+..+ ....+....+.+...|+.+.|....+++++++|+++..|..++.+|.
T Consensus 651 --------------------m~~~p--------d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 651 --------------------MPITP--------DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred --------------------CCCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 00001 11111112222445688999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHhh
Q psy12713 495 LFGQYEEALRNLDKTIA 511 (551)
Q Consensus 495 ~~g~~~~A~~~~~~al~ 511 (551)
..|+|++|.+..+...+
T Consensus 703 ~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 703 DAGKWDEVARVRKTMRE 719 (857)
T ss_pred HCCChHHHHHHHHHHHH
Confidence 99999999999987754
No 77
>KOG1840|consensus
Probab=99.77 E-value=3.6e-16 Score=147.41 Aligned_cols=239 Identities=16% Similarity=0.165 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDT----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV------ 166 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------ 166 (551)
...+...+|..|..+|++++|+..++.++..- .............+|..|..++ ++.+|+..|++++.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcC
Confidence 77778889999999999999999999999861 1111122334445999999999 999999999999976
Q ss_pred --CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCHH---HHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713 167 --DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP-----NFHV---ARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236 (551)
Q Consensus 167 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 236 (551)
+|.-+.++.++|.+|...|++++|..++++++++.. ..+. .+..++ .++...+++++|..++++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~------~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA------AILQSMNEYEEAKKLLQK 350 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH------HHHHHhcchhHHHHHHHH
Confidence 344467899999999999999999999999998732 2222 333444 344445999999999999
Q ss_pred HHHhCC--------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 237 FVDTHS--------NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 237 ~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
++++.- ..+..+.++|.+|..+|++++|.+.+++++.+. +.....+..+|..+.+ .+++.+|.
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~-~k~~~~a~ 429 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE-LKKYEEAE 429 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH-hcccchHH
Confidence 987642 335688999999999999999999999999873 2335578889999877 99999999
Q ss_pred HHHHHHHhc-------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 301 KLIEKAISI-------DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 301 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
..|.+++.+ .|+....+.+|+-+|..+|++++|+++.++++..
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999988765 3445678999999999999999999999998753
No 78
>KOG2376|consensus
Probab=99.76 E-value=3.2e-14 Score=130.84 Aligned_cols=414 Identities=12% Similarity=0.104 Sum_probs=239.8
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
+....++..-..+...|+|++|.....+++...|+ ...+....-.+..+.++|++|+...+.-......+ ..
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-----~~ 81 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-----SF 81 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-----hh
Confidence 35578888889999999999999999999999998 89999999999999999999996655433222221 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
.+..+.|.++++ ..++|+..++ ..++.+.......|++++++|+|++|...|+...+.+.++.+........-.
T Consensus 82 ~fEKAYc~Yrln-k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~-- 155 (652)
T KOG2376|consen 82 FFEKAYCEYRLN-KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV-- 155 (652)
T ss_pred hHHHHHHHHHcc-cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--
Confidence 256999999999 9999999998 4566667788999999999999999999999998876665544332221100
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------CCC-----CHHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----------DPE-----NASLY 282 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~-----~~~~~ 282 (551)
+-.-.+ . ..+.....|. +.+.+++.+.++...|+|.+|++.+++++++ +.+ -..+.
T Consensus 156 ------~a~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 156 ------AAALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR 227 (652)
T ss_pred ------HHhhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 000000 0 2222223333 3456666666666666666666666666322 111 12344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-------------------------------------------------
Q psy12713 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSC------------------------------------------------- 313 (551)
Q Consensus 283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------------------- 313 (551)
..++.++.. +|+.++|...|...++.+|.+
T Consensus 228 vQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk 306 (652)
T KOG2376|consen 228 VQLAYVLQL-QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK 306 (652)
T ss_pred HHHHHHHHH-hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 555666333 666666666666666554322
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH-HHHHHHHHhccccCCCcchhhhhHHHHHHHH
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI-AQMKVCERYNIKKKVSPRSQNITKNEKLAIK 392 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 392 (551)
...+.+.+.+.+..+..+.+.+...+.-...|................ ........+.......+.-.....-...-
T Consensus 307 ~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ-- 384 (652)
T KOG2376|consen 307 QAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ-- 384 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH--
Confidence 123446677777777777777766665555554332111111000000 00011111110000000000000000000
Q ss_pred HHhhchhhhccccCCCCCccccCcchhhHHHHhhh--------ccCCccccCCCcchhhhhhhhhccchhhhchhhhhcC
Q psy12713 393 QLRENNDIIIRPADKGGKTVVMDKADYTQKMTSIL--------NSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASD 464 (551)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
+.+..+++..++..+. ....+...|+.... ....++..++
T Consensus 385 -------------------l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a-------------iv~l~~~~~~ 432 (652)
T KOG2376|consen 385 -------------------LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA-------------IVALYYKIKD 432 (652)
T ss_pred -------------------HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH-------------HHHHHHhccC
Confidence 0111112222222211 00011111111111 0111222233
Q ss_pred -------hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 465 -------FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 465 -------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
+++|+.++.....-.+..-..+...+..-.+.|+-++|...+++.++.+|++.++...+..+|..
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 45555555554444444556677778888888999999999999999999999999999888876
No 79
>KOG1840|consensus
Probab=99.75 E-value=5.8e-16 Score=146.04 Aligned_cols=238 Identities=18% Similarity=0.198 Sum_probs=197.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhc--------CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc----
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIES--------TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED---- 127 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 127 (551)
-..+....|..+..+|+|+.|+..|+.+++. .|. -......+|.+|..++++.+|+..|++++.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~---va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV---VASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3455666899999999999999999999998 453 5555556999999999999999999999986
Q ss_pred -CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 128 -TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD--------PNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 128 -~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
.++++.+ +..+.++|..|...| ++++|..++++++.+. |.-...+..++.++..++++++|..++++++
T Consensus 275 ~G~~h~~v-a~~l~nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 275 FGEDHPAV-AATLNNLAVLYYKQG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred cCCCCHHH-HHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3455544 778999999999999 9999999999998863 2235677889999999999999999999998
Q ss_pred hcC-----C---CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHhccCHH
Q psy12713 199 ALN-----P---NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFD 262 (551)
Q Consensus 199 ~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~ 262 (551)
++. + .-.....++|.+++.. |++++|.+.+++++.+. +.....+..+|..+.+.+++.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKM------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 762 2 2345677888888887 99999999999999865 223457889999999999999
Q ss_pred HHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 263 GAEEYFNRSIRV-------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309 (551)
Q Consensus 263 ~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 309 (551)
+|...|.+++.+ .|+....+.+++.+|-. +|+++.|+++.+.++..
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~-~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA-QGNYEAAEELEEKVLNA 479 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-cccHHHHHHHHHHHHHH
Confidence 999999988765 34556688899999555 99999999999998843
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.75 E-value=5.4e-15 Score=140.47 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.++..+|.++...|+.+++...+.++....|.+... .......+.++...| ++++|...+++++..+|++..++..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 67777777777777777777777777766666654332 233444666677777 7777777777777777766655543
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+..+...|++..+.....+++ ......+|........+|.++.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVL------------------------------------PLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred -hHHHHHhcccccCchhHHHHH------------------------------------hccCcCCCCcHHHHHHHHHHHH
Confidence 444444333332222222222 2222233444445555555666
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH----HHHHHHHHHHHHhCCHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM----FAYETLGTIEVQRGRLEE 332 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 332 (551)
..|++++|+..++++++..|+++.++..+|.+++. .|++++|+.++++++...|.++ ..+..+|.++...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 66666666666666666666665555556665554 5666666666666655544321 234455666666666666
Q ss_pred HHHHHHHhccccc
Q psy12713 333 AVKCFNKALPLAR 345 (551)
Q Consensus 333 A~~~~~~a~~~~~ 345 (551)
|+..|++++...|
T Consensus 205 A~~~~~~~~~~~~ 217 (355)
T cd05804 205 ALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHhcccc
Confidence 6666666554433
No 81
>KOG1915|consensus
Probab=99.75 E-value=1.5e-13 Score=123.02 Aligned_cols=417 Identities=9% Similarity=0.048 Sum_probs=287.2
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+...|+.-|.--..++++..|.++|+++|..+.. +...|...+.+-++......|...+++++.+-|.-.. .|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq----lW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ----LW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH----HH
Confidence 5677888888888999999999999999999987 8999999999999999999999999999999887543 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
+....+--.+| +...|.+.|++.+...|+ ..+|......-.+.++.+.|...|++.+-..|+ ...|+..+..-.+
T Consensus 145 yKY~ymEE~Lg-Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k-- 219 (677)
T KOG1915|consen 145 YKYIYMEEMLG-NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEK-- 219 (677)
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHh--
Confidence 55777777889 999999999999999985 678888888889999999999999999988875 5566666644444
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCC
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ-ARGN 295 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 295 (551)
.|+..-|...|.+++....++. ..+...|..-..++.++.|..+|+-++..-|.+..-....+.+.+. +-|+
T Consensus 220 ----~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 220 ----HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred ----cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 4999999999999998776653 3556677777888999999999999999988873332223333232 2344
Q ss_pred H---HHHHH-----HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH--HHHHhHHHHHHHHHH
Q psy12713 296 V---DEAIK-----LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL--SHIYSLRDAAIAQMK 365 (551)
Q Consensus 296 ~---~~A~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 365 (551)
- ++++. -|++.+..+|.+-.+|+..-.+-...|+.+.-.+.|++|+...|...+- |.-|... .....
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL---WinYa 372 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL---WINYA 372 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH---HHHHH
Confidence 3 33332 4677888899999999999999999999999999999999887764331 1111111 00000
Q ss_pred HHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhh
Q psy12713 366 VCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEE 445 (551)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (551)
+...+.. ........-+...++.++... ..+ ...|...+...++..++..+......++..
T Consensus 373 lyeEle~-----ed~ertr~vyq~~l~lIPHkk-------------FtF-aKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 373 LYEELEA-----EDVERTRQVYQACLDLIPHKK-------------FTF-AKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred HHHHHHh-----hhHHHHHHHHHHHHhhcCccc-------------chH-HHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 0000000 000001111111111111100 000 000111111122222222222222233333
Q ss_pred hhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy12713 446 SEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 514 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 514 (551)
+|..-.+-.....-.++++++....+|++-++-.|.+..+|...|..-..+|+.+.|...|+-|++...
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 333222222222244568899999999999999999999999999999999999999999998887653
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.73 E-value=4.5e-13 Score=128.44 Aligned_cols=271 Identities=17% Similarity=0.103 Sum_probs=200.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
..+.++-++.++...|++++|+.++.+.-..-.+ ....+-.+|.++.++|++++|...|...++.+|++..+..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~--- 76 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR--- 76 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH---
Confidence 4567888999999999999999999998888888 8899999999999999999999999999999999955433
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCC--------------------------------hhHHHHHHHHHH
Q psy12713 140 IKRAVVHLH-----AASDFTKAFADLDEAEKVDPNV--------------------------------ADSYYQRGQIYC 182 (551)
Q Consensus 140 ~~la~~~~~-----~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~la~~~~ 182 (551)
.+..+... .. +.+.-...|++.....|.. |..+..+-.+|.
T Consensus 77 -~L~~~~g~~~~~~~~-~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 77 -GLEEALGLQLQLSDE-DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred -HHHHHHhhhcccccc-cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 34444421 22 4566677777776666643 112222323333
Q ss_pred HhCCHHHHHHHHHHHH---hcC------------CCCH--HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcH
Q psy12713 183 LFGQYEEALRNLDKTI---ALN------------PNFH--VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVV 245 (551)
Q Consensus 183 ~~~~~~~A~~~~~~~l---~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 245 (551)
...+..-....+.... +.. |... .+++.++..+.. .|++++|+.++++++...|..+
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~------~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY------LGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhcCCCcH
Confidence 2222222222222221 111 1111 233445544444 4999999999999999999999
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc--CC-------HHH
Q psy12713 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--SC-------MFA 316 (551)
Q Consensus 246 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--~~-------~~~ 316 (551)
+.+...|.++-..|++.+|...++.+-.+++.+-.+....+..+++ .|+.++|...+......+. .. ...
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999988777777777677 9999999999988765542 11 233
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
....|.+|.+.|++..|++.|..+.+...
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998877643
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.5e-13 Score=120.87 Aligned_cols=277 Identities=18% Similarity=0.160 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
+......|..-+..|+|.+|.....+.-+..+. ...++..-+.+..++|+++.|-.++.++-+..+++. .....
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~l 157 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVEL 157 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHH
Confidence 455667888889999999999999998888876 777888888899999999999999999999855542 34567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-- 218 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 218 (551)
..+.+....| +++.|.....++....|.++.+......+|...|++........+.-+..--+..-...+-..-+..
T Consensus 158 trarlll~~~-d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 158 TRARLLLNRR-DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHHhCC-CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 7999999999 9999999999999999999999999999999999999999999888776543333222222111110
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
.-....+..+.-..+++..-..-..++.....++.-+.+.|+.++|.+..+.+++..-+.. ....++. +. -+++..
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~-~~d~~~ 312 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LR-PGDPEP 312 (400)
T ss_pred HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cC-CCCchH
Confidence 1111122222333344444444455678888999999999999999999999998765543 3333333 45 789999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
=++..++.+...|+++..+..+|.++.+.+.|.+|..+|+.+++..|+..
T Consensus 313 l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 313 LIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 99999999999999999999999999999999999999999998877644
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=3.7e-15 Score=132.24 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=91.0
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
+..+..++..|..++..|++++|+..|++++...|.++....+++.+|.++...|++++|+..++++++..|+++.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-DY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-HH
Confidence 44788899999999999999999999999999988744455788999999999999999999999999999887664 34
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713 138 AHIKRAVVHLHA--------ASDFTKAFADLDEAEKVDPNVADSY 174 (551)
Q Consensus 138 ~~~~la~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~ 174 (551)
+++.+|.++... | ++++|+..+++++..+|++...+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHHCCCChhHH
Confidence 667788887765 5 66666666666666666664443
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.70 E-value=7.3e-15 Score=130.34 Aligned_cols=198 Identities=19% Similarity=0.113 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh---
Q psy12713 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD--- 172 (551)
Q Consensus 96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 172 (551)
..+..++.+|..++..|++++|+..+++++...|+++.. ..+++.+|.++...| ++++|+..++++++.+|+++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA-EQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHH
Confidence 466777777888778888888888888877777766432 345666777777777 788888888888777777665
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
+++.+|.++.... + ..+...|++++|+..+++++..+|++..++..+.
T Consensus 109 a~~~~g~~~~~~~--------------------------~------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 109 AYYLRGLSNYNQI--------------------------D------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHHhc--------------------------c------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 5677777776540 0 2222335555555555555555555543332221
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCC
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGR 329 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 329 (551)
.+....+ .. ......+|..++. .|++.+|+..+++++...|+. +.++..+|.++...|+
T Consensus 157 ~~~~~~~----~~-------------~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 157 RMDYLRN----RL-------------AGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHH----HH-------------HHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 1111000 00 1112345555555 666666666666666665543 4566666666666666
Q ss_pred HHHHHHHHHHhccccc
Q psy12713 330 LEEAVKCFNKALPLAR 345 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~~ 345 (551)
+++|..+++......|
T Consensus 219 ~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 219 KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 6666666665554443
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=7.5e-14 Score=132.64 Aligned_cols=274 Identities=16% Similarity=0.072 Sum_probs=201.2
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
+.+..+..+|..+...|+.+.|...+.++.+..|.+....+.....|.++...|++++|...+++++...|++.. +
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a 79 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL----A 79 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----H
Confidence 467889999999999999999999999988888764345677888999999999999999999999999998853 2
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 139 HIKRAVVHLHAA---SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 139 ~~~la~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
+.. +..+...| +....+...+......+|........+|.++...|++++|+..++++++..|++...+..++.++
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 222 33444444 04445555554444556777778888999999999999999999999999999999999999888
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLM 289 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 289 (551)
+.. |++++|+..+++++...|..+ ..+..+|.++...|++++|+..+++++...|.. .......+...
T Consensus 159 ~~~------g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 159 EMQ------GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHc------CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 887 999999999999999877443 356689999999999999999999998766622 21111111111
Q ss_pred --HHhcCCHHHHHHH--H-HHHHhcCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 290 --LQARGNVDEAIKL--I-EKAISIDKS--CMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 290 --~~~~~~~~~A~~~--~-~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+...|....+..+ + .......|. ........+.++...|+.++|...++.....
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1213433333322 1 111111121 2233346888888999999999999877553
No 87
>KOG3785|consensus
Probab=99.68 E-value=1.4e-12 Score=112.75 Aligned_cols=257 Identities=12% Similarity=0.106 Sum_probs=173.5
Q ss_pred HHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713 69 KRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH 148 (551)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 148 (551)
..++...||..|+.+++-.+..+.+ .....-..+|.|++.+|+|++|...|+-+.+.+.-+.+ .+.+++.+++-
T Consensus 30 edfls~rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e----l~vnLAcc~Fy 103 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE----LGVNLACCKFY 103 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc----cchhHHHHHHH
Confidence 3456778999999999887766554 23355666899999999999999999988875544434 34559999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHH
Q psy12713 149 AASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVE 228 (551)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (551)
+| .|.+|.....+ .|+++-....+-.+..+.|+-++-.. |...++ +..+-...++.+.+.. -.++
T Consensus 104 Lg-~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR------~HYQ 168 (557)
T KOG3785|consen 104 LG-QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMR------MHYQ 168 (557)
T ss_pred HH-HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHH------HHHH
Confidence 99 99999876655 46666555555555566666544333 333332 2224445566666665 7788
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCCHHHH--------
Q psy12713 229 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA-RGNVDEA-------- 299 (551)
Q Consensus 229 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~A-------- 299 (551)
+|++.|.+.+..+|+....-..++.+|.++.-++-+.+.+.--++..|+++.+....+...++. .|+..++
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 8888888888888877777777888888888888888888888888888877766666554431 1222111
Q ss_pred --------HHHHH----------HHHhcCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 300 --------IKLIE----------KAISIDKS----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 300 --------~~~~~----------~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
...++ -+++.-|. -|++..++...|.++|+..+|....+.. +|..+.
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~ 317 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPY 317 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChH
Confidence 11111 11122222 2678899999999999999999888754 555544
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.66 E-value=2.7e-14 Score=120.75 Aligned_cols=128 Identities=19% Similarity=0.323 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC--HHHHHH
Q psy12713 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN--VDEAIK 301 (551)
Q Consensus 224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~ 301 (551)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.+++...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 488899999999999999999999999999999999999999999999999999999999999975443777 599999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHH
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELS 351 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 351 (551)
.++++++.+|+++.++..+|..+...|++++|+.+++++++..|.+.+-.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999988766543
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.65 E-value=5.9e-14 Score=140.36 Aligned_cols=262 Identities=12% Similarity=0.055 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
..++..++..+...+ ++++|+..++.+++.+|+...+++.+|.++.+.+++.++... .++...+.+
T Consensus 31 ~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~----------- 96 (906)
T PRK14720 31 FKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN----------- 96 (906)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-----------
Confidence 557777999999999 999999999999999999999999999999999998887766 555554433
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
.++ .++.++...+...+.+..+++.+|.||-++|+.++|...|+++++.+|+++.++.++|..+.. . +
T Consensus 97 ---------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-d 164 (906)
T PRK14720 97 ---------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-D 164 (906)
T ss_pred ---------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-h
Confidence 344 566666666777888888999999999999999999999999999999999999999999666 6 9
Q ss_pred HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccC
Q psy12713 296 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKK 375 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (551)
.++|+.++.+++.. +...+++.++.+++++.+..+|++.+....+-.. +..
T Consensus 165 L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~k--------i~~------- 215 (906)
T PRK14720 165 KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERK--------VLG------- 215 (906)
T ss_pred HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHH--------HHh-------
Confidence 99999999999876 6677899999999999999999987643222100 000
Q ss_pred CCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhh
Q psy12713 376 VSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENE 455 (551)
Q Consensus 376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (551)
... .. .....+.-.
T Consensus 216 -----------------~~~-------------------------------------------~~------~~~~~~~~l 229 (906)
T PRK14720 216 -----------------HRE-------------------------------------------FT------RLVGLLEDL 229 (906)
T ss_pred -----------------hhc-------------------------------------------cc------hhHHHHHHH
Confidence 000 00 000011111
Q ss_pred hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHh--------------------cCHHHHHHHHHHHhhcCCc
Q psy12713 456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF--------------------GQYEEALRNLDKTIALNPN 515 (551)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------g~~~~A~~~~~~al~~~p~ 515 (551)
...|...++|++++..++.+++.+|.|..+...++.||... .++..|+..|++-+..+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence 22355668899999999999999999999999999999743 2345666666666666666
Q ss_pred hHH
Q psy12713 516 FHV 518 (551)
Q Consensus 516 ~~~ 518 (551)
+..
T Consensus 310 ~yv 312 (906)
T PRK14720 310 NFV 312 (906)
T ss_pred CEE
Confidence 543
No 90
>KOG1915|consensus
Probab=99.64 E-value=9.6e-11 Score=105.45 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=233.1
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
..++..|+.-+..-++......|..++.+++..-|. ....|+....+--.+|+..-|.+.|++-+...|+. .
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-----q 175 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-----Q 175 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-----H
Confidence 447889999999999999999999999999999998 78888888888889999999999999999999874 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA-RAQRHFVVH 216 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-~~~~~~~~~ 216 (551)
+|......-.+.+ ..+.|...|++.+-.+| ....|...+..-.+.|+...|...|+++++.-.++... ....+.+.+
T Consensus 176 aW~sfI~fElRyk-eieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~f 253 (677)
T KOG1915|consen 176 AWLSFIKFELRYK-EIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEF 253 (677)
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5666666777777 88888888888887776 46677777888888888888888888877665443221 111111111
Q ss_pred HhhcCCChhHHHHHHHHHHHH--------------------------------------------HHhCCCcHHHHHHHH
Q psy12713 217 KMIVPGDRERVEQSLKEFRNF--------------------------------------------VDTHSNVVEACTLFA 252 (551)
Q Consensus 217 ~~~~~~~~~~~~~A~~~~~~~--------------------------------------------~~~~~~~~~~~~~la 252 (551)
-..++.++.|.-.|+-+ ++.+|-+.++|+.+-
T Consensus 254 ----Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 254 ----EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 11223444444444444 444555555555555
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCcCC----HHHHHH
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDPENAS-------LYVHRAMLMLQ--ARGNVDEAIKLIEKAISIDKSC----MFAYET 319 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~--~~~~~~~A~~~~~~~~~~~~~~----~~~~~~ 319 (551)
.+-...|+.+.-.+.|++++..-|.... ++..+-.+++. ...+.+.+.++|+.++++-|.. +..|..
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM 409 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 5555556666666666666655444321 11111111111 1455566666666666655543 445555
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchh
Q psy12713 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENND 399 (551)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 399 (551)
.+....++.+...|.+.+-.|+...|.+.......- .+..+..+.+...
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe-------------------------------lElqL~efDRcRk 458 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE-------------------------------LELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH-------------------------------HHHHHhhHHHHHH
Confidence 555566666666666666666666665543211110 1111111111100
Q ss_pred hhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccC
Q psy12713 400 IIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVD 479 (551)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 479 (551)
+ +.+ -++-.|++...+...+. .-..+|+.+.|...|+-|+...
T Consensus 459 L-------------------------YEk--fle~~Pe~c~~W~kyaE----------lE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 459 L-------------------------YEK--FLEFSPENCYAWSKYAE----------LETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred H-------------------------HHH--HHhcChHhhHHHHHHHH----------HHHHhhhHHHHHHHHHHHhcCc
Confidence 0 000 01111222222211111 1223588888998998888765
Q ss_pred CCchH--HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 480 PNVAD--SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 480 p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
.-+.. .|-..-..-...|.++.|...|++.|+..+... +|...+..-.
T Consensus 502 ~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 43332 233333444567889999999999988877665 6665554433
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=1.2e-14 Score=116.43 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=39.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|.++...|++++|+..|++++..+|.+..++..+|.++.. .|++++|+..|++++..+|+++.+++.+|.++...|+++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 3333444444444444444444444444444444433332 344444444444444444444444444444444444444
Q ss_pred HHHHHHHHhcccccCHHH
Q psy12713 332 EAVKCFNKALPLARDEAE 349 (551)
Q Consensus 332 ~A~~~~~~a~~~~~~~~~ 349 (551)
+|+..|++++...|+++.
T Consensus 110 eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 110 LAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHHhCCCChH
Confidence 444444444444443333
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=1.6e-14 Score=115.69 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 238 (551)
.++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..|++++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~------g~~~~A~~~y~~Al 85 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML------KEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH------hhHHHHHHHHHHHH
Confidence 344455554442 334455555555555555555555555555555555555444444 55555555555555
Q ss_pred HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
..+|+++.+++.+|.++...|++++|+..|++++...|+++..+..++.+
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555555555555555555555555544444443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.63 E-value=4.6e-12 Score=121.56 Aligned_cols=239 Identities=18% Similarity=0.135 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
+.+++.....++...|++++|++++++....-.+. ...+-..|.++..+| ++++|...|...+..+|++...+..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg-~~~eA~~~y~~Li~rNPdn~~Yy~~ 77 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLG-RKEEAEKIYRELIDRNPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 56788889999999999999999998877766655 445566999999999 9999999999999999999999999
Q ss_pred HHHHHHHhC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH-HHHHHHHHhCCCcHHHHHH
Q psy12713 177 RGQIYCLFG-----QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL-KEFRNFVDTHSNVVEACTL 250 (551)
Q Consensus 177 la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~ 250 (551)
+..+..... +.+.-...|++.....|....+.. +. ..+..-..+.... .++...+.. ..|.+...
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~------L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~ 148 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LP------LDFLEGDEFKERLDEYLRPQLRK--GVPSLFSN 148 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH-hh------cccCCHHHHHHHHHHHHHHHHhc--CCchHHHH
Confidence 988874333 567778888888888886544322 11 1122224444433 344444433 44556666
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhc---------------CCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 251 FAQVLVDQEDFDGAEEYFNRSIRV---------------DPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 251 la~~~~~~~~~~~A~~~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
+-.+|....+..-....+...... .|.. ..+++.++..|-. .|++++|+.+++++|+..|..
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g~~~~Al~~Id~aI~htPt~ 227 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LGDYEKALEYIDKAIEHTPTL 227 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCc
Confidence 666665443333333333332211 1111 2355778888655 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++.+...|.++...|++.+|.+.++.+..+++.+.-+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence 9999999999999999999999999999999887653
No 94
>KOG3785|consensus
Probab=99.62 E-value=3.2e-12 Score=110.48 Aligned_cols=281 Identities=12% Similarity=0.101 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC------------C
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT------------S 129 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------~ 129 (551)
+..+-.|.+++..|+|++|+..|+-+...+.. ..+.+..+|.|++.+|.|.+|.....++-+.- -
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34445699999999999999999998886665 78999999999999999999998877763310 0
Q ss_pred CCchhH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 130 VDPKIK----------VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 130 ~~~~~~----------~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
++.... ..-...++.+.+..- .|++|++.|.+++..+|.....-..++.||.++.-++-+.+.+.--++
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 111000 112234677777777 899999999999999999988899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHh-hcCCCh-----------hHHHHHHHHHH----------HHHHhCCC----cHHHHHHHHH
Q psy12713 200 LNPNFHVARAQRHFVVHKM-IVPGDR-----------ERVEQSLKEFR----------NFVDTHSN----VVEACTLFAQ 253 (551)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~A~~~~~----------~~~~~~~~----~~~~~~~la~ 253 (551)
..|+.+.+....+...++. ..-... ..++.+...++ .+++.-|. -|++..+++.
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 9999999988888777765 110000 00111111111 12222232 2578889999
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhcC------cCCHHHHHHHHHHH
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA---ISID------KSCMFAYETLGTIE 324 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~---~~~~------~~~~~~~~~l~~~~ 324 (551)
.|.++++.++|+...+ +++|..|.-+...|.+... .|+--...+.++-+ +++- .+.......++.++
T Consensus 294 YyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aa-lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAA-LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHH-hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 9999999999998765 4688888888888887655 66543333333222 2221 12234455666666
Q ss_pred HHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 325 VQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 325 ~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
+-..++++.+.++...-.-.-++...
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~F 395 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDF 395 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 67777777777776655544444443
No 95
>KOG3060|consensus
Probab=99.62 E-value=2e-12 Score=106.73 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=122.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 201 NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
.++....+-....+.... |+.+-|..++++.....|++..+....|..+...|++++|+++|+..++-+|.+..
T Consensus 48 g~e~w~l~EqV~IAAld~------~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDT------GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred CchHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 344444444444444444 88999999999999889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
++-....+ +..+|+.-+|++.+...++..+.+.++|..++.+|...|++++|.-++++.+-+.|.++-....
T Consensus 122 ~~KRKlAi-lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 122 IRKRKLAI-LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred HHHHHHHH-HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 87766555 4458999999999999999999999999999999999999999999999999999998764433
No 96
>KOG3060|consensus
Probab=99.62 E-value=6.1e-13 Score=109.66 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHK 217 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 217 (551)
.+-....+....| +.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+...-.+.-.
T Consensus 54 l~EqV~IAAld~~-~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTG-RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 3444566677788 899999999998888899999988999999999999999999999999999888777655533333
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--- 294 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 294 (551)
+|+.-+|++.+...++.++.+.++|..++.+|...|+|++|.-++++++-+.|.++..+..+|.+++. .|
T Consensus 133 ------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~e 205 (289)
T KOG3060|consen 133 ------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAE 205 (289)
T ss_pred ------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHH
Confidence 38888899999999999999999999999999999999999999999999999998888888888776 44
Q ss_pred CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713 295 NVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325 (551)
Q Consensus 295 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (551)
++.-|.++|.++++++|.+..+++.+-.+..
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 5677888888888888877777766554443
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.61 E-value=2e-13 Score=113.82 Aligned_cols=183 Identities=19% Similarity=0.167 Sum_probs=169.0
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+.......|...++. |++..|+
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~------g~~~~A~ 120 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN------GNFGEAV 120 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh------cchHHHH
Confidence 4555777777788889999999 99999999999999999999999999999988888888888887 9999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
..++++....|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..++- .|+++.|..++..+....+
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999888 9999999999999999989
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+..+..+++.+....|++++|.....+-+.
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 8999999999999999999999988766544
No 98
>KOG1130|consensus
Probab=99.59 E-value=1.6e-14 Score=126.83 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVNA 138 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 138 (551)
-.+-..|..+++.|++...+.+|+.+++...++ .....+|..+|.+|+.+++|++|+++-..-+.+. -.+..-.+.+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 445667899999999999999999999998774 3445678899999999999999999865433321 1111111223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHHhCC--------------------HHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQ--------------------YEEALR 192 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~--------------------~~~A~~ 192 (551)
--++|.++...| .|++|+.+..+-+.... ....+++++|.+|...|+ ++.|.+
T Consensus 98 sgNLGNtlKv~G-~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 98 SGNLGNTLKVKG-AFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred cccccchhhhhc-ccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 345999999999 99999999988776532 226789999999998874 345556
Q ss_pred HHHHHHhcCCCC------HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccC
Q psy12713 193 NLDKTIALNPNF------HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQED 260 (551)
Q Consensus 193 ~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~ 260 (551)
+|..-+++.... ..++-++|..+|.+ |+++.|+..-+.-+.+.... -.++.++|.++.-.|+
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLL------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeee------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 666555553332 22344555445544 99999998887766554221 3688899999999999
Q ss_pred HHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc------CCHHHHHHHHHHHHHhC
Q psy12713 261 FDGAEEYFNRSIRVD----P--ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRG 328 (551)
Q Consensus 261 ~~~A~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 328 (551)
++.|+++|+..+.+. . ......+.+|..|.- ..++++|+.++.+-+.+.. ....+++.+|..+...|
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 999999999876542 2 224567889999777 8999999999998776532 34678999999999999
Q ss_pred CHHHHHHHHHHhccc
Q psy12713 329 RLEEAVKCFNKALPL 343 (551)
Q Consensus 329 ~~~~A~~~~~~a~~~ 343 (551)
..++|+.+.++.+++
T Consensus 330 ~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 330 EHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999998887765
No 99
>KOG4340|consensus
Probab=99.58 E-value=2e-12 Score=109.10 Aligned_cols=253 Identities=15% Similarity=0.134 Sum_probs=177.0
Q ss_pred HHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
.+.+..+|..|+.++..-.+.+|. +...+..+|.||+...+|..|..+|++.-...|....++.. .+..+++.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY----~AQSLY~A 91 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY----QAQSLYKA 91 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH----HHHHHHHh
Confidence 347778899999999988888887 77888889999999999999999999988888876554433 66677777
Q ss_pred cCCHHHHHHHHHHHHhc------------------------------CC--CChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 150 ASDFTKAFADLDEAEKV------------------------------DP--NVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~------------------------------~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
+ .+..|+......... -| +..+...+.|.+.++.|+++.|++-|+.+
T Consensus 92 ~-i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 92 C-IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred c-ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 7 676666555433221 12 33556677777778888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh----CCCc-------------------------HHHH
Q psy12713 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT----HSNV-------------------------VEAC 248 (551)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~ 248 (551)
++...-.+..-++++.++++. +++..|++...+.++. .|.- .+++
T Consensus 171 lqvsGyqpllAYniALaHy~~------~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAHYSS------RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HhhcCCCchhHHHHHHHHHhh------hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 887777777777778777777 8888888777666543 2321 1455
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
+..+.++++.|+++.|.+.+...--.. .-+|..+.+++..- . .+++.+...-+.-.++++|--++.+-++-.+|.+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-M-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-c-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 666777778888877776654332221 12355666666552 2 5677777777777777777667778888888887
Q ss_pred hCCHHHHHHHHH
Q psy12713 327 RGRLEEAVKCFN 338 (551)
Q Consensus 327 ~g~~~~A~~~~~ 338 (551)
..-++-|-..+-
T Consensus 323 Neyf~lAADvLA 334 (459)
T KOG4340|consen 323 NEYFDLAADVLA 334 (459)
T ss_pred hHHHhHHHHHHh
Confidence 777776666553
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=5.8e-13 Score=112.67 Aligned_cols=154 Identities=14% Similarity=0.206 Sum_probs=116.8
Q ss_pred HHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713 105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 184 (551)
Q Consensus 105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 184 (551)
+..|+..|+++......++.. +|.. -+...+ +.++++..+++++..+|++++.|..+|.+|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~-------------~~~~~~-~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH-------------QFASQQ-TPEAQLQALQDKIRANPQNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc-------------cccCch-hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Confidence 445777888777544432221 1211 111255 788888888888888898888999999999889
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhhcCCChhH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCH
Q psy12713 185 GQYEEALRNLDKTIALNPNFHVARAQRHFVV-HKMIVPGDRER--VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF 261 (551)
Q Consensus 185 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 261 (551)
|++++|+..|++++++.|++...+..++.++ ... |+ .++|...++++++.+|+++.++..+|..+...|++
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~------g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQA------GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 9999999999988888888888888888764 344 55 58888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHH
Q psy12713 262 DGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~ 280 (551)
++|+..++++++..|.+..
T Consensus 161 ~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 161 AQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHhhCCCCcc
Confidence 8888888888888776543
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.4e-11 Score=108.76 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=208.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF-HVARAQRHFVVHKM 218 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 218 (551)
..-|..-+..| +|.+|.....+.-+..+.....+..-+....++|+++.|-.++.++-+..+++ ......++......
T Consensus 88 ~~egl~~l~eG-~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEG-DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 33566666778 99999999988887777777777778888888999999999999998885443 33444555444444
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHH-HHHhcC
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAML-MLQARG 294 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~-~~~~~~ 294 (551)
|+++.|.....+++...|.++.+.....++|...|++.....++.+.-+..--+.. -+-+.+.. .++..+
T Consensus 167 ------~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 167 ------RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred ------CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999998888777654322211 11111111 122222
Q ss_pred CHHHHH---HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713 295 NVDEAI---KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN 371 (551)
Q Consensus 295 ~~~~A~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (551)
+-..+. .+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+.. +...+.
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~---------------- 303 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP---------------- 303 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh----------------
Confidence 222222 244443333445688888999999999999999999999998765433 111110
Q ss_pred cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN 451 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (551)
T Consensus 304 -------------------------------------------------------------------------------- 303 (400)
T COG3071 304 -------------------------------------------------------------------------------- 303 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713 452 LENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL 531 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 531 (551)
...-++...=++..++.++..|+++..+..+|..+.+.+.|.+|..+|+.+++..|+.. .+..+|.++.+.|
T Consensus 304 -------~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g 375 (400)
T COG3071 304 -------RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLG 375 (400)
T ss_pred -------hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcC
Confidence 01115667777778888999999999999999999999999999999999999988764 4788899999888
Q ss_pred hhhhhhh
Q psy12713 532 AELMAFS 538 (551)
Q Consensus 532 ~~~~a~~ 538 (551)
+..+|-.
T Consensus 376 ~~~~A~~ 382 (400)
T COG3071 376 EPEEAEQ 382 (400)
T ss_pred ChHHHHH
Confidence 7766543
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.56 E-value=5.6e-13 Score=133.46 Aligned_cols=226 Identities=11% Similarity=0.006 Sum_probs=181.2
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713 165 KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244 (551)
Q Consensus 165 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 244 (551)
..+|.+..++..+...+...+++++|+..++.+++..|+....++.+|.+++.. +++.++.-.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~------~~~~~~~lv----------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR------RPLNDSNLL----------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh------cchhhhhhh-----------
Confidence 457888999999999999999999999999999999999999999999866665 654444333
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 324 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 324 (551)
.++.......++ .+++++...+...+++..+++.+|.||-. +|+.++|...++++++.+|+++.++.++|..|
T Consensus 88 -----~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 -----NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred -----hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 344444445566 56666666777788888899999999544 99999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccc
Q psy12713 325 VQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRP 404 (551)
Q Consensus 325 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (551)
... +.++|+.++.+|+...-+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~~i~~--------------------------------------------------------- 182 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYRFIKK--------------------------------------------------------- 182 (906)
T ss_pred HHh-hHHHHHHHHHHHHHHHHhh---------------------------------------------------------
Confidence 999 9999999999998762111
Q ss_pred cCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCC---
Q psy12713 405 ADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN--- 481 (551)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 481 (551)
++|.++..++.+.+..+|.
T Consensus 183 ----------------------------------------------------------kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 183 ----------------------------------------------------------KQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred ----------------------------------------------------------hcchHHHHHHHHHHhcCcccch
Confidence 2333444444444444443
Q ss_pred -----------------chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713 482 -----------------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST 530 (551)
Q Consensus 482 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 530 (551)
....+.-+=.+|...++|++++..++.+++.+|+|..++..++.+|...
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 3445555558899999999999999999999999999999999999963
No 103
>KOG2376|consensus
Probab=99.56 E-value=6.3e-11 Score=109.60 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRG 178 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 178 (551)
..++.--..+...|+|++|.+...+++...|++. .++.....+.++.+ +|++|+...+.-...... ....+..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~----~a~~cKvValIq~~-ky~~ALk~ikk~~~~~~~-~~~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDE----DAIRCKVVALIQLD-KYEDALKLIKKNGALLVI-NSFFFEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcH----hhHhhhHhhhhhhh-HHHHHHHHHHhcchhhhc-chhhHHHH
Confidence 3444445566788999999999999999999884 46666888999999 999999555543322221 22237899
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q psy12713 179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ 258 (551)
Q Consensus 179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 258 (551)
.|.++++..++|+..++ ..++.+.......+.++|+. |+|++|+..|+.+++.+.++.+........-...
T Consensus 87 Yc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRL------ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred HHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHH------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999 45666667788888888888 9999999999999998877765543332222111
Q ss_pred cCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------cC-------CHHHHHHHHH
Q psy12713 259 EDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISID--------KS-------CMFAYETLGT 322 (551)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--------~~-------~~~~~~~l~~ 322 (551)
. -.+ . ..+.....|+ +.+.+++.+.++.. .|+|.+|++.+++++.+. .+ -..+...++.
T Consensus 158 ~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 158 A--LQV-Q-LLQSVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred h--hhH-H-HHHhccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 0 011 1 3334444444 56788999999777 999999999999995431 11 1346778999
Q ss_pred HHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 323 IEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 323 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++..+|+.++|...|...+..+|.+...
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 9999999999999999999998877643
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.55 E-value=2.6e-13 Score=121.44 Aligned_cols=264 Identities=19% Similarity=0.157 Sum_probs=197.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
..+.++-.|+|..++..++ ....++. ...+....+.+++..+|+++..+...... + ++. ..+...++..+
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~--~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~----~-~~~--l~av~~la~y~ 76 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPE--NKLERDFYQYRSYIALGQYDSVLSEIKKS----S-SPE--LQAVRLLAEYL 76 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCH--HHHHHHHHHHHHHHHTT-HHHHHHHS-TT----S-SCC--CHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCch--hHHHHHHHHHHHHHHcCChhHHHHHhccC----C-Chh--HHHHHHHHHHH
Confidence 4567788999999998777 3344443 46778888999999999988766554331 1 222 22444566655
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh
Q psy12713 147 LHAASDFTKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR 224 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (551)
...+ +.+.++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++..+
T Consensus 77 ~~~~-~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~------ 144 (290)
T PF04733_consen 77 SSPS-DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKM------ 144 (290)
T ss_dssp CTST-THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT------
T ss_pred hCcc-chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc------
Confidence 5555 67777777766554332 34556677788888899999999887764 4566666666677777
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
++++.|.+.++.+.+.+.+..-+....+++.+..| ++.+|...|++..+..+.++..+..++.+++. +|++++|.+.
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~ 223 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEEL 223 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence 99999999999999888887777777777777666 69999999999988888899999999999888 9999999999
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCHHHHHHH
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRL-EEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
+.+++..+|+++.++.+++.+....|+. +.+.+++.+.....|+++-+...
T Consensus 224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999998 66778888888889988765433
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=3.4e-12 Score=106.56 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHH
Q psy12713 77 YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKA 156 (551)
Q Consensus 77 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A 156 (551)
...+...+-.....+|+ +..+ ..++..+...|+-+.+..+..++....|.+.... ..+|...+..| ++..|
T Consensus 49 ~~~a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll----~~~gk~~~~~g-~~~~A 119 (257)
T COG5010 49 TQGAAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL----AAQGKNQIRNG-NFGEA 119 (257)
T ss_pred hhHHHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH----HHHHHHHHHhc-chHHH
Confidence 33466666667778887 7777 8888888999999998888888887787775433 33888888899 99999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q psy12713 157 FADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN 236 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 236 (551)
+..++++....|++..+|..+|.+|.+.|++++|...|.+++++.|+.+.+..+++..++.. |+++.|..++..
T Consensus 120 ~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~------gd~~~A~~lll~ 193 (257)
T COG5010 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR------GDLEDAETLLLP 193 (257)
T ss_pred HHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc------CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888777777 888888888888
Q ss_pred HHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 237 FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 237 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
+....+.+..+..+++.+....|++++|.....+
T Consensus 194 a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888887888888888888888888888776554
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=4.9e-13 Score=107.21 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=108.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 311 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 311 (551)
..+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.+++. .|++++|+.++++++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 457788888999988899999999999999999999999999999999999999999777 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHH
Q psy12713 312 SCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHI 353 (551)
Q Consensus 312 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 353 (551)
.++..++.+|.++...|++++|+..|+++++.+|++......
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 999999999999999999999999999999999988765433
No 107
>KOG1128|consensus
Probab=99.51 E-value=1e-12 Score=124.15 Aligned_cols=224 Identities=14% Similarity=0.130 Sum_probs=194.6
Q ss_pred hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713 95 HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174 (551)
Q Consensus 95 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 174 (551)
|........++..+...|=..+|+..+++.- .|-....||...| +..+|..+..+-++ .|+++..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg-~~~kaeei~~q~le-k~~d~~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLG-QHGKAEEINRQELE-KDPDPRLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhc-ccchHHHHHHHHhc-CCCcchhH
Confidence 3367778889999999999999999999843 4455888999999 99999999999998 67788888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 254 (551)
..+|.+.....-|++|.+..+.... .+...+| ......++++++...++..++++|-....|+.+|.+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sa------rA~r~~~------~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISA------RAQRSLA------LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA 528 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhH------HHHHhhc------cccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence 8888888777767777776655332 2333344 333345999999999999999999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713 255 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334 (551)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (551)
..+.++++.|...|..++..+|++..+|.+++..|+. .|+-.+|...+.++++.+-++...|.+.-.+....|.+++|+
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 9999999999999999999999999999999999888 999999999999999999889999999999999999999999
Q ss_pred HHHHHhccccc
Q psy12713 335 KCFNKALPLAR 345 (551)
Q Consensus 335 ~~~~~a~~~~~ 345 (551)
+.+.+.+.+..
T Consensus 608 ~A~~rll~~~~ 618 (777)
T KOG1128|consen 608 KAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHhhh
Confidence 99999987643
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=6.4e-12 Score=125.30 Aligned_cols=157 Identities=16% Similarity=0.070 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 232 (551)
..+++.-........|++++++..+|.+....|.+++|...++.++++.|++..++..++.++.+. +++++|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~------~~~eeA~~ 141 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ------QGIEAGRA 141 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------ccHHHHHH
Confidence 333444444445567888888888888888888888888888888888888888888888777777 88888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC
Q psy12713 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 312 (551)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 312 (551)
.+++++...|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++.. .|+.++|...|+++++....
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCc
Confidence 88888888888888888888888888888888888888888888888888888888555 88888888888888877654
Q ss_pred CHHH
Q psy12713 313 CMFA 316 (551)
Q Consensus 313 ~~~~ 316 (551)
-...
T Consensus 221 ~~~~ 224 (694)
T PRK15179 221 GARK 224 (694)
T ss_pred chHH
Confidence 4433
No 109
>KOG1130|consensus
Probab=99.48 E-value=1.4e-12 Score=114.98 Aligned_cols=116 Identities=13% Similarity=0.031 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHH
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV------DPNVADSYY 175 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~ 175 (551)
..-|.-+++.|++...+..|+.+++...++-......|..+|..|+.++ +|++|+++-.--+.+ .-..+.+--
T Consensus 21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~-DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK-DYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh-hHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3447778899999999999999999988887777778999999999999 999999875433322 222355667
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHh
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNPN------FHVARAQRHFVVHKM 218 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~~~~~~~~~~ 218 (551)
++|.++-.+|.|++|+.+..+-+.+... ...+++++|.+|...
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak 148 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK 148 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence 8999999999999999998887765322 345666777555443
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=2.7e-10 Score=122.35 Aligned_cols=383 Identities=18% Similarity=0.113 Sum_probs=244.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-cCCCCchhHHHHHHHH
Q psy12713 64 LLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE-DTSVDPKIKVNAHIKR 142 (551)
Q Consensus 64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l 142 (551)
+-..|..+...|++.+|+..+..+-.. ..........+......|++..+...+..+-. ....++. .....
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~----l~~~~ 415 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPR----LVLLQ 415 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcc----hHHHH
Confidence 344456667788888887765544211 12345556677778888988887777655411 1112222 22447
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-----HHH
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPN---------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-----VAR 208 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~ 208 (551)
+.++...| ++++|...+..+....+. .......++.++...|++++|...+++++...+... .+.
T Consensus 416 a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 416 AWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 77888899 999999999988764321 134455678888999999999999999998654432 223
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Q psy12713 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----- 277 (551)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----- 277 (551)
..++.++... |++++|...+++++...... ..++..+|.++...|++++|...+++++.....
T Consensus 495 ~~lg~~~~~~------G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 495 SVLGEVHHCK------GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3455444444 99999999999998754321 245678899999999999999999998875221
Q ss_pred ---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 278 ---NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 278 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
....+..+|.+++. .|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+....
T Consensus 569 ~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred ccHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 12345567888777 89999999999998875321 2456667899999999999999999998765433211
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhcc
Q psy12713 350 LSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNS 429 (551)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (551)
........... ..... ...+....+...+...
T Consensus 648 ~~~~~~~~~~~--~~~~~--------------~~~g~~~~A~~~l~~~-------------------------------- 679 (903)
T PRK04841 648 HSDWIANADKV--RLIYW--------------QMTGDKEAAANWLRQA-------------------------------- 679 (903)
T ss_pred cHhHhhHHHHH--HHHHH--------------HHCCCHHHHHHHHHhc--------------------------------
Confidence 00000000000 00000 0000001111111000
Q ss_pred CCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCC------CchHHHhhhhhHHHHhcCHHHHH
Q psy12713 430 NDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDP------NVADSYYQRGQIYCLFGQYEEAL 503 (551)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~ 503 (551)
....... ... ........+..+...|++++|+..+++++.... ....++..+|.++...|+.++|.
T Consensus 680 --~~~~~~~--~~~----~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 680 --PKPEFAN--NHF----LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred --CCCCCcc--chh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0000000 000 000112233336778999999999999988632 24568889999999999999999
Q ss_pred HHHHHHhhcCCchHH
Q psy12713 504 RNLDKTIALNPNFHV 518 (551)
Q Consensus 504 ~~~~~al~~~p~~~~ 518 (551)
..+.+++++......
T Consensus 752 ~~L~~Al~la~~~g~ 766 (903)
T PRK04841 752 RVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHhCccch
Confidence 999999999866543
No 111
>KOG1128|consensus
Probab=99.47 E-value=5.4e-12 Score=119.44 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=191.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-.......|..++..|-...|+.+|++ ...|-....||...|+..+|.....+-++ .|.++. .|
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Er-----------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~----ly 460 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFER-----------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPR----LY 460 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHh-----------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcch----hH
Confidence 445566789999999999999999985 45677778899999999999999999988 444433 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
..+|.+..... -|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.
T Consensus 461 c~LGDv~~d~s-~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql- 532 (777)
T KOG1128|consen 461 CLLGDVLHDPS-LYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL- 532 (777)
T ss_pred HHhhhhccChH-HHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-
Confidence 55777777777 677777766654 3446677788888899999999999999999999999999999999998
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA 299 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 299 (551)
++++.|.+.|..++...|++..+|++++..|+..|+-.+|...++++++.+.++..+|-+...+... .|.+++|
T Consensus 533 -----ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda 606 (777)
T KOG1128|consen 533 -----EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDA 606 (777)
T ss_pred -----hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHH
Confidence 9999999999999999999999999999999999999999999999999998889999998888666 9999999
Q ss_pred HHHHHHHHhcC
Q psy12713 300 IKLIEKAISID 310 (551)
Q Consensus 300 ~~~~~~~~~~~ 310 (551)
++.+.+.+...
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 99999988653
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=3.6e-12 Score=102.19 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=75.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 238 (551)
.+++++..+|++....+.+|.++...|++++|...+++++..+|.++..+..+|.++... |++++|+..+++++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML------KEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666655555 66666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 239 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 239 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
..+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666666666666544
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=1.8e-10 Score=123.64 Aligned_cols=270 Identities=14% Similarity=0.038 Sum_probs=186.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-----CchhHHH
Q psy12713 64 LLSKAKRAFEHEDYLTAIRHCTEEIES-TSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-----DPKIKVN 137 (551)
Q Consensus 64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 137 (551)
....|......|++..+...+..+-.. ... .+......+.++...|++++|...+..+....+. .+.....
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~---~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~ 453 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLE---NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAE 453 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhc---CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHH
Confidence 344566666777777766665543110 011 2334567788888999999999999888764322 2233444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA-----DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF------HV 206 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~------~~ 206 (551)
....++.++...| ++++|...+++++...+... .+...+|.++...|++++|...+++++...... ..
T Consensus 454 ~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 454 FNALRAQVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 5556788889999 99999999999988544432 355778889999999999999999998764322 12
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-
Q psy12713 207 ARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE- 277 (551)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~- 277 (551)
....++.+++.. |++++|...+++++..... ....+..+|.++...|++++|...+.+++.....
T Consensus 533 ~~~~la~~~~~~------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 533 SLLQQSEILFAQ------GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 334455555555 9999999999998875221 1234567888999999999999999998875321
Q ss_pred ----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHH----HHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 278 ----NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE----TLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 278 ----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~----~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
....+..++.++.. .|++++|...+.++....+.. ..... .....+...|+.+.|..++.......
T Consensus 607 ~~~~~~~~~~~la~~~~~-~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLA-RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred CchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 23455567888666 999999999999987653321 11111 12244556899999999988876533
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=1.1e-11 Score=123.77 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.++++..+|.+....|.+++|...++.+++..|++ ..+...++.++.+.+ ++++|+..+++++..+|+++.+++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~-~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQ-GIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhc-cHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 44555555555555555555555555555555544 223333555555555 5555555555555555555555555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCC
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSN 243 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 243 (551)
+|.++...|++++|+..|++++..+|++..++..+|.++... |+.++|...|++++....+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~------G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR------GALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhCc
Confidence 555555555555555555555554444455555555444444 5555555555555444433
No 115
>KOG0553|consensus
Probab=99.45 E-value=1.7e-12 Score=110.50 Aligned_cols=111 Identities=30% Similarity=0.443 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Q psy12713 246 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV 325 (551)
Q Consensus 246 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (551)
+-+-.-|.-+++.++|.+|+..|.++|+++|.++..|.+++.+|.+ +|.++.|++.++.++.++|....+|..||.+|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3455668888899999999999999999999999999999999777 999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713 326 QRGRLEEAVKCFNKALPLARDEAELSHIYSLR 357 (551)
Q Consensus 326 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 357 (551)
.+|++++|++.|+++++++|++...+..+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999999999998766655433
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.45 E-value=2e-11 Score=104.37 Aligned_cols=180 Identities=17% Similarity=0.139 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHH
Q psy12713 58 ESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVN 137 (551)
Q Consensus 58 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 137 (551)
+.++..++..|...+..|+|.+|+..|++++...|.++....+.+.+|.+++..|++++|+..+++.++..|+++.. ..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~ 80 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DY 80 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hh
Confidence 45788999999999999999999999999999999988899999999999999999999999999999999998865 57
Q ss_pred HHHHHHHHHHHhcC----------CHHHHHHHHHHHHhcCCCChhHHH---HHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713 138 AHIKRAVVHLHAAS----------DFTKAFADLDEAEKVDPNVADSYY---QRGQIYCLFGQYEEALRNLDKTIALNPNF 204 (551)
Q Consensus 138 ~~~~la~~~~~~~~----------~~~~A~~~~~~~~~~~~~~~~~~~---~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 204 (551)
+++.+|.+++.... ...+|+..|+..+...|++..+-. .+..+-. .+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~--------------~l------ 140 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN--------------RL------ 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--------------HH------
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH--------------HH------
Confidence 88888888766530 345899999999999998753321 1111100 00
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHH
Q psy12713 205 HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A 264 (551)
..--+..|..+++. |.+..|+..++.+++..|+. .+++..++..+...|..+.|
T Consensus 141 a~~e~~ia~~Y~~~------~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 AEHELYIARFYYKR------GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHCT------T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 01112233333333 66666666666666666654 66667777777777766643
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.43 E-value=4.2e-12 Score=113.67 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=179.8
Q ss_pred CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713 56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
+++...+..+...++++..|+++.++.-.... ..| ...+...++..+...++.+.++..++..+........
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~----~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~-- 101 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSP----ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESN-- 101 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSC----CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CH--
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CCh----hHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccccc--
Confidence 34456777888999999999998776544331 133 4455666666655545667777777666544322111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
.......|.++...| ++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+........+++.
T Consensus 102 ~~~~~~~A~i~~~~~-~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 102 EIVQLLAATILFHEG-DYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHCCCC-HHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 123344778888889 999999888754 56788888999999999999999999999998887766666666555
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
+.. ..+.+.+|...|++.....+.++..++.++.+++.+|++++|...+.+++..+|.++.++.+++.+... .|+
T Consensus 176 l~~----g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk 250 (290)
T PF04733_consen 176 LAT----GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGK 250 (290)
T ss_dssp HHH----TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-
T ss_pred HHh----CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCC
Confidence 544 114689999999999888889999999999999999999999999999999999999999999998676 888
Q ss_pred H-HHHHHHHHHHHhcCcCCHHH
Q psy12713 296 V-DEAIKLIEKAISIDKSCMFA 316 (551)
Q Consensus 296 ~-~~A~~~~~~~~~~~~~~~~~ 316 (551)
. +.+.+++.+....+|+++.+
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHH
Confidence 7 66778888888889987653
No 118
>KOG4340|consensus
Probab=99.42 E-value=2e-11 Score=103.13 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=145.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 146 HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
+++.. +|..|++++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|.........+..++.. +
T Consensus 20 lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A------~ 92 (459)
T KOG4340|consen 20 LIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA------C 92 (459)
T ss_pred HHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh------c
Confidence 35666 8888888888888888888888888888888888888888888888888888777777777777777 8
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
.+..|+.....+.....-..+..-.-+.+....+++..+....++.- ..+......+.|.+.++ .|++++|++-|+.
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllyk-egqyEaAvqkFqa 169 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYK-EGQYEAAVQKFQA 169 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeec-cccHHHHHHHHHH
Confidence 88888877766544321223344455666777788887777665532 12456777888888777 8999999999999
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+++...-++..-++++.++++.|+++.|+++....++.
T Consensus 170 AlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99988888888899999999999999999888777654
No 119
>KOG0553|consensus
Probab=99.42 E-value=4e-12 Score=108.19 Aligned_cols=113 Identities=18% Similarity=0.179 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
++.+-..|..++..++|.+|+..|.++|..+|. ++..|.+++.+|.++|.++.|++.++.++.++|.. ..+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y----skay~ 153 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY----SKAYG 153 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH----HHHHH
Confidence 344445555555555555555555555555555 55555555555555555555555555555555544 33444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY 181 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 181 (551)
.+|.+|..+| ++.+|+..|++++.++|++...+.+|..+-
T Consensus 154 RLG~A~~~~g-k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 154 RLGLAYLALG-KYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHccC-cHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 4555555555 555555555555555555554444444333
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=1.1e-11 Score=96.58 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=99.3
Q ss_pred HHhC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHH
Q psy12713 238 VDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 316 (551)
Q Consensus 238 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 316 (551)
..+. ++..+..+.+|..+...|++++|...|+-+...+|.+...|+++|.++ +.+|++++|+..|.+++.++|+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3455 667788899999999999999999999999999999999999999994 44999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
+.++|.+++..|+.+.|.+.|+.++......+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999999999999999998874433
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.41 E-value=8.6e-11 Score=102.71 Aligned_cols=91 Identities=10% Similarity=0.101 Sum_probs=80.6
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
.++..++..|...+..|+|++|+..|++++...|.++....+.+.+|.++++.+++++|+..+++.++..|+++.. ..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 4678899999999999999999999999999999877777788999999999999999999999999999999876 567
Q ss_pred HHHHHHHHHHhc
Q psy12713 139 HIKRAVVHLHAA 150 (551)
Q Consensus 139 ~~~la~~~~~~~ 150 (551)
++.+|.++...+
T Consensus 109 ~Y~~g~~~~~~~ 120 (243)
T PRK10866 109 LYMRGLTNMALD 120 (243)
T ss_pred HHHHHHhhhhcc
Confidence 788887765444
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=2.7e-09 Score=97.24 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (551)
|....+++..+...+.. |++++|+..++.++...|+++..+...+.+++..++.++|.+.+++++..+|+.+..
T Consensus 303 ~~~~aa~YG~A~~~~~~------~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLA------GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred ccchHHHHHHHHHHHHh------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 45555666666555555 666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 282 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 282 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
+.++|..++. .|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.....
T Consensus 377 ~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 377 QLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6666666555 66666666666666666666666666666666666666666655544433
No 123
>KOG2047|consensus
Probab=99.36 E-value=3.4e-08 Score=92.78 Aligned_cols=270 Identities=17% Similarity=0.172 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhC-------------CchHHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTS-------------QSTKAIEDLTQ 123 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g-------------~~~~A~~~~~~ 123 (551)
..|..+|..|.+.|.|+.|...|++++...-.- .++..+.+.-..+..+++ +.+-....|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 456788999999999999999999998754321 112222222112222222 12223333444
Q ss_pred Hhh------------cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC-----hhHHHHHHHHHHHhC
Q psy12713 124 LVE------------DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV-----ADSYYQRGQIYCLFG 185 (551)
Q Consensus 124 ~~~------------~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~ 185 (551)
.+. .+|++. ..| +-.+-+..| +..+-+..|..++.. +|.. ...|...|..|...|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV----~eW--~kRV~l~e~-~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNV----EEW--HKRVKLYEG-NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHhccchHHHHHHHhcCCccH----HHH--HhhhhhhcC-ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 333 344442 222 333444556 666666666666543 4432 346666777777777
Q ss_pred CHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------------C------C
Q psy12713 186 QYEEALRNLDKTIALNPNF----HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------------S------N 243 (551)
Q Consensus 186 ~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------~------~ 243 (551)
+.+.|...|+++.+..-.. ...|...|..-.+. .+++.|+.+.+++.... | .
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh------~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH------ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh------hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 7777777777776653222 33444445444443 66666666666665321 1 1
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc--CCHHHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK--SCMFAYETLG 321 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 321 (551)
+..+|..++......|-++.....|++++++.--.|....+.|.. ++...-++++.+.|++.+.+.+ .-.+.|...-
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf-LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF-LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 355666666666667777777777777776666666666666665 3335556677777777666643 2233333222
Q ss_pred HHH---HHhCCHHHHHHHHHHhccccc
Q psy12713 322 TIE---VQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 322 ~~~---~~~g~~~~A~~~~~~a~~~~~ 345 (551)
..+ +.--..+.|..+|++|++..|
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 211 122356667777777777666
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.35 E-value=3.5e-11 Score=93.87 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
..+..+.+|..++..|++++|...|+-+...+|.+ ...|+++|.++..+| ++.+|+..|.+++.++|+++..+++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----~~y~~gLG~~~Q~~g-~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----FDYWFRLGECCQAQK-HWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCCchHHHH
Confidence 67777788888888888888888888888888877 345566888888888 8888888888888888888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
.|.|++..|+.+.|.+.|+.++....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 88888888888888888888877763
No 125
>KOG2047|consensus
Probab=99.35 E-value=2.3e-08 Score=93.86 Aligned_cols=411 Identities=12% Similarity=0.125 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
+..|+.-...+..+|+...-...|.++|..-|- ..+..+|-..-......|-++.++..|++-++.+|....-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee------ 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE------ 174 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH------
Confidence 445666677788899999999999999988885 3355666666666667788889999999999998876332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc------------------------CCCC---------------------hhHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKV------------------------DPNV---------------------ADSYY 175 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~---------------------~~~~~ 175 (551)
....+...+ +.++|.+.+...+.. +|+. ...|.
T Consensus 175 -yie~L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 175 -YIEYLAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred -HHHHHHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 233455556 666666666554432 2221 23688
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHH-----HHHHHHHHHhh----cCC---ChhHHHHHHHHHHHH---
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNP---NFHVAR-----AQRHFVVHKMI----VPG---DRERVEQSLKEFRNF--- 237 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~-----~~~~~~~~~~~----~~~---~~~~~~~A~~~~~~~--- 237 (551)
.||..|.+.|.+++|...|++++..-- +....+ +.-..+..++. ... ..-+.+-....|+..
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 899999999999999999999987532 222111 11111111111 000 111233333444433
Q ss_pred ---------HHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 238 ---------VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPEN-----ASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 238 ---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
+..+|.+..-|.....+ ..|+..+-+..|.+++.. +|.- ...|...|..|.. .|+.+.|...
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~-~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN-NGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh-cCcHHHHHHH
Confidence 45678888777765544 467777778888877753 4432 3467778887555 8888888888
Q ss_pred HHHHHhcCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccC------------------HHHHHHHHhHHHHH
Q psy12713 303 IEKAISIDKS----CMFAYETLGTIEVQRGRLEEAVKCFNKALPLARD------------------EAELSHIYSLRDAA 360 (551)
Q Consensus 303 ~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~ 360 (551)
|+++.+..-. -..+|...|..-.+..+++.|.+.+++|...... +..+|..|......
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 8888776422 2567888888888888888888888888765322 12245555444332
Q ss_pred HHHHHHHHH-hccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCc
Q psy12713 361 IAQMKVCER-YNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDP 439 (551)
Q Consensus 361 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (551)
..-.+..++ +.......-....+..++...++. -..+...-..+.+.-.+-..|...
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEe----------------------h~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE----------------------HKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hHHHHHHHHHHHcCCccCCCccHH
Confidence 222111111 000001111111111111111110 011223333343433444455555
Q ss_pred chhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCC-c-hHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 440 TKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPN-V-ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
+.+......... .. .....+.|..+|++|++..|. . -.+|...+..-..-|--..|++.|++|-..
T Consensus 548 diW~tYLtkfi~--ry-----gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 548 DIWNTYLTKFIK--RY-----GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHH--Hh-----cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 554443333222 11 124688899999999998873 2 235666677777778888888888887654
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=1.5e-09 Score=98.97 Aligned_cols=158 Identities=22% Similarity=0.189 Sum_probs=142.8
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH
Q psy12713 168 PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA 247 (551)
Q Consensus 168 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 247 (551)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++... ++..+|.+.+++++..+|..+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~------nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA------NKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCccHH
Confidence 677889999999999999999999999999999999999999999777777 99999999999999999999999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (551)
+.++|..+++.|++.+|+..++..+..+|+++..|..++..|-. +|+..+ +....+..+...
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~-----------------a~~A~AE~~~~~ 438 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAE-----------------ALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHH-----------------HHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999666 786544 445567778889
Q ss_pred CCHHHHHHHHHHhcccc-cCHHH
Q psy12713 328 GRLEEAVKCFNKALPLA-RDEAE 349 (551)
Q Consensus 328 g~~~~A~~~~~~a~~~~-~~~~~ 349 (551)
|++++|+..+..+.+.. .+.+.
T Consensus 439 G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred CCHHHHHHHHHHHHHhccCCcHH
Confidence 99999999999998876 44444
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.31 E-value=7.8e-10 Score=94.58 Aligned_cols=185 Identities=18% Similarity=0.158 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---h
Q psy12713 96 TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---D 172 (551)
Q Consensus 96 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~ 172 (551)
..+..++..|..++..|++.+|+..|++++...|.++.. ..+.+.+|.++...| +++.|+..+++.++..|+++ .
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA-PQAQLMLAYAYYKQG-DYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhh
Confidence 346677778888888888888888888888887776554 567777888888888 88888888888888777764 4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHH---H
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEAC---T 249 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~ 249 (551)
+++.+|.++..+..-. + ....+.+...+|+..|+..+...|++..+- .
T Consensus 81 A~Y~~g~~~~~~~~~~---------~--------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~ 131 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGI---------L--------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK 131 (203)
T ss_dssp HHHHHHHHHHHHHHHH---------H---------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCccc---------h--------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence 6666666655441100 0 012333666777777777777777764221 1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHH
Q psy12713 250 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQ 326 (551)
Q Consensus 250 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 326 (551)
.+..+ +..+ ..--+.+|..|++ .|.+..|+..++.+++..|+. ..++..++..|..
T Consensus 132 ~l~~l--------------~~~l------a~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 132 RLAEL--------------RNRL------AEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHH--------------HHHH------HHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHH------HHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 11111 0000 1112334555554 566666666666666665554 3445556666666
Q ss_pred hCCHHH
Q psy12713 327 RGRLEE 332 (551)
Q Consensus 327 ~g~~~~ 332 (551)
+|..+.
T Consensus 191 l~~~~~ 196 (203)
T PF13525_consen 191 LGLKQA 196 (203)
T ss_dssp TT-HHH
T ss_pred hCChHH
Confidence 665553
No 128
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.31 E-value=1.6e-10 Score=93.15 Aligned_cols=136 Identities=22% Similarity=0.218 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.....|..+...+..++...+...++.++...|++++...+.+.+|.+++..|++++|...|+.++...|+ +.....+.
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~ 88 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 45667788888888999999999999999999997777899999999999999999999999999997754 45556678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
+.++.++...| ++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 89 l~LA~~~~~~~-~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQG-QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88999999999 99999999976 33444557788999999999999999999999875
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.29 E-value=2.7e-09 Score=93.36 Aligned_cols=197 Identities=15% Similarity=0.100 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DS 173 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ 173 (551)
.+..++..|..++..|++++|+..|++++...|..+. ...+.+.+|.++...+ ++++|+..+++.++.+|+++ .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~-~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4556777788888888888888888888888887643 3556677888888888 88888888888888877763 45
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---HHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---CTL 250 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~ 250 (551)
++.+|.++...+.- .+.....++ ....+.....+|+..|++.++..|++..+ ...
T Consensus 109 ~Y~~g~~~~~~~~~-----~~~~~~~~~-----------------~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 109 LYMRGLTNMALDDS-----ALQGFFGVD-----------------RSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHhhhhcchh-----hhhhccCCC-----------------ccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 66666654433210 111111111 11222344556667777777777765321 111
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHh
Q psy12713 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQR 327 (551)
Q Consensus 251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 327 (551)
+..+... -..--+.+|..|++ .|.|..|+.-++.+++..|+. .+++..++..|...
T Consensus 167 l~~l~~~--------------------la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 167 LVFLKDR--------------------LAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHHHH--------------------HHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 1111000 01112244555454 566666666666666555543 45555666666666
Q ss_pred CCHHHHHHHHH
Q psy12713 328 GRLEEAVKCFN 338 (551)
Q Consensus 328 g~~~~A~~~~~ 338 (551)
|..++|.....
T Consensus 226 g~~~~a~~~~~ 236 (243)
T PRK10866 226 QLNAQADKVAK 236 (243)
T ss_pred CChHHHHHHHH
Confidence 66666655443
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=9.3e-11 Score=109.33 Aligned_cols=114 Identities=21% Similarity=0.210 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
.+...|..++..|+|++|+..|++++..+|. +..+++.+|.++...|++++|+..+++++.++|.+ ..+++.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~l 76 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRK 76 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHH
Confidence 4667778888888888888888888888887 77778888888888888888888888888887776 3456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 184 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 184 (551)
|.++...| ++++|+..|++++.++|+++.+...++.+....
T Consensus 77 g~~~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 77 GTACMKLE-EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888 888888888888888887777777766665444
No 131
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=1.2e-09 Score=88.23 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=147.8
Q ss_pred CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210 (551)
Q Consensus 131 ~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 210 (551)
.++.++..++..|..|-..| -..-|.-.|.+++.+.|+.++++..+|..+...|+++.|.+.|+..++++|...-+..+
T Consensus 60 ~~eeRA~l~fERGvlYDSlG-L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLG-LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred ChHHHHHHHHHhcchhhhhh-HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 34455667788999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 211 RHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE--ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
+|..++.. |++.-|.+.+.+..+.+|++|- .|..+. ...-++.+|...+.+-.+...+....|...+ .
T Consensus 139 Rgi~~YY~------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~-~ 208 (297)
T COG4785 139 RGIALYYG------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE-F 208 (297)
T ss_pred cceeeeec------CchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH-H
Confidence 99777777 9999999999999999999873 222221 2334677777665544333333333333222 2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 289 MLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
| .|+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 209 y---LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 209 Y---LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H---HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 233221 12233333322222 5789999999999999999999999887653
No 132
>KOG1941|consensus
Probab=99.26 E-value=2.7e-09 Score=92.98 Aligned_cols=249 Identities=14% Similarity=0.147 Sum_probs=170.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVN 137 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 137 (551)
.+......|..++...++++|+..+.+.+..-.+.......+-.+..+...+|.+++++.+--..++. +-++......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999998876652224445556667788888888887765544442 2334555667
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
++.+++..+.... ++.+++.+-...+.+.... ......+|..+..++.++++++.|+.+++...++.+...
T Consensus 85 a~lnlar~~e~l~-~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L--- 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLC-EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML--- 160 (518)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee---
Confidence 8888888888888 8888888887777653322 234555666666666666666666666654333222111
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----------HHHH
Q psy12713 213 FVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------ASLY 282 (551)
Q Consensus 213 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~ 282 (551)
...++..+|..+.+..++++|.-+..++.++-... ..++
T Consensus 161 -------------------------------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 161 -------------------------------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred -------------------------------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 12355667777777777777777777766653211 2245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 283 VHRAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
+.++.. ++.+|....|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+....
T Consensus 210 yhmaVa-lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 210 YHMAVA-LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHH-HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 566666 555888888888888887653 2235567789999999999999999999987754
No 133
>KOG2053|consensus
Probab=99.25 E-value=1.4e-07 Score=92.33 Aligned_cols=242 Identities=12% Similarity=0.072 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
+...+--......++|.+|+..+.+.++..|+ ...+....|.++.++|+.++|..+++..-...+++ ...+-.
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D----~~tLq~ 82 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD----DLTLQF 82 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc----hHHHHH
Confidence 34445566778899999999999999999998 88889999999999999999997777766666664 234556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
+-.+|..++ ++++|..+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+.+..++....+.+....-
T Consensus 83 l~~~y~d~~-~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 83 LQNVYRDLG-KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHHh-hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence 888999999 999999999999999998 888888888999999888777766666677787766655554444433111
Q ss_pred CC----hhHHHHHHHHHHHHHHhC-CCcHH-HHHHHHHHHHhccCHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHhcC
Q psy12713 222 GD----RERVEQSLKEFRNFVDTH-SNVVE-ACTLFAQVLVDQEDFDGAEEYFN-RSIRVDPENASLYVHRAMLMLQARG 294 (551)
Q Consensus 222 ~~----~~~~~~A~~~~~~~~~~~-~~~~~-~~~~la~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (551)
.. .--..-|...+++.++.. +-... =....-.++...|++++|...+. ...+..+.......+++.-++...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 11 111233445555555544 21111 11223345556666777776662 2223333333333333322233344
Q ss_pred CHHHHHHHHHHHHhcCcC
Q psy12713 295 NVDEAIKLIEKAISIDKS 312 (551)
Q Consensus 295 ~~~~A~~~~~~~~~~~~~ 312 (551)
++.+-.+...+++..+++
T Consensus 241 ~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKGND 258 (932)
T ss_pred ChHHHHHHHHHHHHhCCc
Confidence 444444444444444444
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.24 E-value=2.3e-10 Score=106.77 Aligned_cols=108 Identities=28% Similarity=0.352 Sum_probs=73.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
...|..++..|++++|+..|+++++.+|+++.++..+|.+++. .|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3445666666777777777777777777777777777776555 677777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHhcccccCHHHHHHHHhHH
Q psy12713 329 RLEEAVKCFNKALPLARDEAELSHIYSLR 357 (551)
Q Consensus 329 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 357 (551)
++++|+..|++++.++|++..+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777777766655555444
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.23 E-value=2.2e-10 Score=89.61 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
+.++..|..+...|++++|+..|.+++...|+.+....+++.+|.++...|+++.|+..+++++...|+++.. ..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA-PDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc-cHHHHH
Confidence 4566677777777777777777777776666532335566667777777777777777777777666654322 234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADS 173 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 173 (551)
+|.++...| ++++|+..+++++...|++..+
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHHCcCChhH
Confidence 667777777 7777777777777766665543
No 136
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.21 E-value=7e-10 Score=85.02 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=85.7
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV 136 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 136 (551)
+...+..++..|...+..|+|++|++.|+.+....|.++....+.+.+|.+|+..|++++|+..+++.++++|.++.+ .
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-d 84 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-D 84 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-c
Confidence 345788999999999999999999999999999999888889999999999999999999999999999999999876 5
Q ss_pred HHHHHHHHHHHHhc
Q psy12713 137 NAHIKRAVVHLHAA 150 (551)
Q Consensus 137 ~~~~~la~~~~~~~ 150 (551)
.+++..|.+++.+.
T Consensus 85 Ya~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 85 YAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHHh
Confidence 67888999988877
No 137
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=6.1e-10 Score=95.93 Aligned_cols=125 Identities=15% Similarity=0.240 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKL 302 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~ 302 (551)
...+..+.-++.-+..+|++.+-|..+|.+|+..|++..|...|.+++++.|+++..+..+|.+++...| ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4467777888888999999999999999999999999999999999999999999999999999776433 46789999
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
+++++..+|.+..+.+.+|..++..|++.+|...++..++..|.+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999999887655
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.20 E-value=1.9e-09 Score=89.91 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713 95 HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174 (551)
Q Consensus 95 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 174 (551)
+..+.+++.+|..+...|++++|+.+|+++++..|+.+. ...++..+|.++...| ++++|+..+++++...|++...+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNG-EHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHH
Confidence 346778889999999999999999999999887765433 2457788999999999 99999999999999999888888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 244 (551)
..+|.++...|+...+...+..++ ..+++|++.+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~--------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE--------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH--------------------------HHHHHHHHHHHHHHhhCchh
Confidence 899999988888777665544432 44566777777777777665
No 139
>KOG3081|consensus
Probab=99.18 E-value=1.5e-07 Score=79.12 Aligned_cols=261 Identities=19% Similarity=0.154 Sum_probs=190.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
+--.+.++-.|+|..++..-.+.-... . ..+....+.+.|..+|++...+......- .+. ..+...++.
T Consensus 12 LF~iRn~fY~Gnyq~~ine~~~~~~~~-~---~~e~d~y~~raylAlg~~~~~~~eI~~~~-----~~~--lqAvr~~a~ 80 (299)
T KOG3081|consen 12 LFNIRNYFYLGNYQQCINEAEKFSSSK-T---DVELDVYMYRAYLALGQYQIVISEIKEGK-----ATP--LQAVRLLAE 80 (299)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc-c---hhHHHHHHHHHHHHccccccccccccccc-----CCh--HHHHHHHHH
Confidence 334667788999999998777654443 3 66777888899999999876655443322 111 334555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVD--PNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
.....+ +.+.-+....+.+... ..+......-|.+|..-|++++|.+..... .+.++...-..++.++
T Consensus 81 ~~~~e~-~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~---- 150 (299)
T KOG3081|consen 81 YLELES-NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKM---- 150 (299)
T ss_pred HhhCcc-hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHH----
Confidence 666666 6666665555544332 223345566678899999999999988763 2344444444555555
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
.+.+-|.+.++++.+++.+. .+..+|..+.. .++..+|.-+|+..-+..|..+......+.+++. +|++++
T Consensus 151 --~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~ee 225 (299)
T KOG3081|consen 151 --HRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEE 225 (299)
T ss_pred --HHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHH
Confidence 99999999999998876554 33444444432 3478999999999999888889999999999998 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhcccccCHHHHH
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV-KCFNKALPLARDEAELS 351 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~ 351 (551)
|...++.++..++++++++.++..+-...|...++. +.+.+.....|+++-+.
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999999999999887665 45566667778877653
No 140
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=1.3e-08 Score=93.49 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=149.1
Q ss_pred HhcCCCCh---hHH----HHHHHHHHHhCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHh---hcCCChhHH
Q psy12713 164 EKVDPNVA---DSY----YQRGQIYCLFGQ---YEEALRNLDKTI---ALNPNFHVARAQRHFVVHKM---IVPGDRERV 227 (551)
Q Consensus 164 ~~~~~~~~---~~~----~~la~~~~~~~~---~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 227 (551)
....|.+. ++| +.+|......+. .+.|+..|.+++ .++|....++..++.|++.. .........
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 33345555 444 666666655553 567889999999 99999999999999999877 122257788
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
.+|....+++++.+|.++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+... .|+.++|.+.+++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999777 999999999999999
Q ss_pred hcCcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhcccccC
Q psy12713 308 SIDKSCMFAYETLGTI-EVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 308 ~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
+++|....+-...-++ .+-....++|+..|-+-.+....
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESH 439 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccc
Confidence 9999876655544444 45567788999988776554433
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=2.3e-09 Score=86.45 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~ 298 (551)
++...+...++..+..+|+. ..+.+.+|.++...|++++|...|+.++...|+. +.+.+.++.+++. .|++++
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHH
Confidence 77778888888888888888 4677889999999999999999999999987665 3477889999887 999999
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 299 AIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999763 3344457788999999999999999999999875
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1.2e-09 Score=85.45 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSY 174 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~ 174 (551)
++.++.+|..+...|++++|+..|.+++...|+++.. ..+++.+|.++...| +++.|+..++.++..+|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA-PNAHYWLGEAYYAQG-KYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3577889999999999999999999999988876432 456777999999999 9999999999999988875 5789
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 208 (551)
..+|.++...|++++|+..+++++...|++..+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999999999999999999999876543
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.15 E-value=1.5e-09 Score=95.54 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=99.7
Q ss_pred chHHHHHHHHHH-HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 60 HELDLLSKAKRA-FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 60 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
.....|..|..+ +..|+|++|+..|+..+...|+++..+.+++.+|.+|+..|++++|+..|+++++..|+++.. ..+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-ADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hHH
Confidence 557788899887 567999999999999999999866667899999999999999999999999999999987665 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSY 174 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 174 (551)
++.+|.++...| ++++|...|+++++..|+...+.
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHCcCCHHHH
Confidence 888999999999 99999999999999999876543
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.6e-09 Score=92.18 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
..+.-+.-++.-+..+|++++.|..+|.+|+.+|++..|...|.+++++.|++++.+..++.+++.. .......++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~---a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ---AGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCcccHHHH
Confidence 4667777788888889999999999999999999999999999999999999999998888877654 3445667888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
..+++++..+|.+..+...+|..++..|++.+|...++..++..|.+..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 8889999999999999889999999999999999999888888776543
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.14 E-value=3.1e-08 Score=89.74 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcC--CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDT--SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYY 175 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 175 (551)
.+.+...|.+|...|++++|...|.++.... .+++.....++...+.++ ... ++++|+.++++++.+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~-~~~~Ai~~~~~A~~~--------- 103 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKG-DPDEAIECYEKAIEI--------- 103 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHT-THHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hhh-CHHHHHHHHHHHHHH---------
Confidence 3444455777888888888888888876642 233333344455444444 444 677777777777643
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHhCCC--c----HHHH
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR-ERVEQSLKEFRNFVDTHSN--V----VEAC 248 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~--~----~~~~ 248 (551)
|...|++..|-..+.++- .++... |++++|++.|++++..... . ...+
T Consensus 104 -----y~~~G~~~~aA~~~~~lA--------------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~ 158 (282)
T PF14938_consen 104 -----YREAGRFSQAAKCLKELA--------------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL 158 (282)
T ss_dssp -----HHHCT-HHHHHHHHHHHH--------------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -----HHhcCcHHHHHHHHHHHH--------------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence 333344433333333222 223333 5555555555555543211 1 3456
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-----HHH
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-----MFA 316 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~ 316 (551)
..+|.++...|+|++|+..|+++....-++ ...++..+.+++. .|++..|...+++....+|.. ...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 788889999999999999999887653221 1244566677777 899999999999998888754 233
Q ss_pred HHHHHHHHHH--hCCHHHHHHHHHHhcccccC
Q psy12713 317 YETLGTIEVQ--RGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 317 ~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~ 346 (551)
...+-.++.. ...+++|+..|++...++|=
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 3344444432 34688888888888777653
No 146
>KOG4648|consensus
Probab=99.13 E-value=1.9e-10 Score=99.34 Aligned_cols=245 Identities=14% Similarity=0.098 Sum_probs=159.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 327 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 327 (551)
.-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++ .+.+..|...++.++.++.....+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCC
Q psy12713 328 GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADK 407 (551)
Q Consensus 328 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (551)
|+..+|.+.++.++.+.|++.++...+..........-..++- +....+......+ + ...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT-------~G~~~A~Q~~~Q~---l----------~~K 238 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKST-------PGFTPARQGMIQI---L----------PIK 238 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcC-------CCCCccccchhhh---c----------ccc
Confidence 9999999999999999999888776665442211111111110 0000000000000 0 000
Q ss_pred CCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHh
Q psy12713 408 GGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYY 487 (551)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 487 (551)
..+...+..+.|...+..+.+. +........+-.....+...-++++|+....+++..+|.......
T Consensus 239 ~~G~~Fsk~~~~~~~i~~~~~~-------------~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s 305 (536)
T KOG4648|consen 239 KPGYKFSKKAMRSVPVVDVVSP-------------RATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS 305 (536)
T ss_pred CcchhhhhhhccccceeEeecc-------------ccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence 0000011111111111111110 000000001111111144445677888888888877777777777
Q ss_pred hhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 488 QRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 488 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
..|.+---.|...++...++.++.+.|.+..+...+...
T Consensus 306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~ 344 (536)
T KOG4648|consen 306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRK 344 (536)
T ss_pred CCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhh
Confidence 788888888888888888888888888877666555443
No 147
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.13 E-value=1.7e-08 Score=85.13 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+..++..|...++.|+|++|+..|+.+....|.++....+...++.++++.+++++|+...++-+.+.|.++.. ..+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 3688999999999999999999999999999999988889999999999999999999999999999999999876 456
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 139 HIKRAVVHLHAAS-------DFTKAFADLDEAEKVDPNVADS---YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208 (551)
Q Consensus 139 ~~~la~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 208 (551)
++..|.+++..-. -...|+..|+..+...|++.-+ ...+..+- .++.- --
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~-------d~LA~-------------~E 170 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLN-------DALAG-------------HE 170 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH-------HHHHH-------------HH
Confidence 6777777654320 3467888888999999987322 11111110 00000 01
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713 209 AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (551)
...+..+.+. |.+..|+..++.+++..|+. .+++..+..+|...|-.++|...-.-.-...|++
T Consensus 171 m~IaryY~kr------~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 171 MAIARYYLKR------GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHh------cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 1223223333 66666666666666655544 3456666667777777777765543333333443
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=4.8e-09 Score=87.24 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=85.2
Q ss_pred HhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713 72 FEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS 151 (551)
Q Consensus 72 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 151 (551)
+-.++|..+...+...++..+. .....+++.+|.++...|++++|+..|++++.+.|+... ...++..+|.++...|
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~~~~~~g- 86 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGLIHTSNG- 86 (168)
T ss_pred ccccccccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHcC-
Confidence 3344566666666666555443 235777888999999999999999999999888765432 2457788999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
++++|+..+++++..+|.....+..+|.++...|+
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 99999999999999988888888888888885443
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.12 E-value=1.1e-10 Score=79.42 Aligned_cols=61 Identities=28% Similarity=0.535 Sum_probs=56.1
Q ss_pred chhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchH
Q psy12713 457 GQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 517 (551)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 517 (551)
..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3467789999999999999999999999999999999999999999999999999999986
No 150
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=5.4e-09 Score=89.08 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+....|..|..++..|+|..|...|..-++..|++++.+.+++.||.+++.+|+++.|...|..+.+..|+++.. ..++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-pdal 218 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-PDAL 218 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC-hHHH
Confidence 345589999999999999999999999999999998899999999999999999999999999999999988775 5788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
+.+|.+...+| +.++|...|+++++..|+...+...
T Consensus 219 lKlg~~~~~l~-~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 219 LKLGVSLGRLG-NTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999 9999999999999999998766543
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.10 E-value=4.9e-10 Score=77.41 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTS 129 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~ 129 (551)
++..++..|..++..|+|++|+..|+++++.+|+ ++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5788999999999999999999999999999998 9999999999999999 79999999999999887
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.8e-09 Score=80.87 Aligned_cols=99 Identities=31% Similarity=0.494 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
++..+|.++...|++++|+..++++++..|.+..++..+|.++.. .|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 467788888899999999999999999888888888889998777 8999999999999999988888889999999999
Q ss_pred hCCHHHHHHHHHHhcccccC
Q psy12713 327 RGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 327 ~g~~~~A~~~~~~a~~~~~~ 346 (551)
.|++++|...+.+++...|+
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999988887763
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=4.3e-10 Score=77.67 Aligned_cols=66 Identities=36% Similarity=0.508 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhccccc
Q psy12713 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG-RLEEAVKCFNKALPLAR 345 (551)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~ 345 (551)
+..|..+|.+++. .|++++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555444 555555555555555555555555555555555555 45555555555555544
No 154
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=7.2e-09 Score=83.80 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=81.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
..|...|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|....+..+.|..++- .|+++-
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L 151 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL 151 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence 4445558888888888888888898888888888888888999999999988888888888888888888666 888888
Q ss_pred HHHHHHHHHhcCcCCHH
Q psy12713 299 AIKLIEKAISIDKSCMF 315 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~ 315 (551)
|.+.+.+..+.+|++|.
T Consensus 152 Aq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hHHHHHHHHhcCCCChH
Confidence 88888888888888764
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.08 E-value=7.2e-10 Score=75.42 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 132 (551)
+.+|..++..|++++|+..|+++++..|+ ++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788999999999999999999999998 999999999999999999999999999999998864
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=1.6e-08 Score=92.99 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhh---cHHHHHHHHHHHh---hcCCCchhHHHHHHHHHHHHHHh---------CCchHHHHHHHHHhhc
Q psy12713 63 DLLSKAKRAFEHE---DYLTAIRHCTEEI---ESTSSNHTKALARLLRATVYIFT---------SQSTKAIEDLTQLVED 127 (551)
Q Consensus 63 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~ 127 (551)
.++.+|...+..+ ..+.|+.+|.+++ ..+|. .+.++..++.|++.. .+..+|....++++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 6688888886655 5678999999999 88888 999999999998865 1345688888888889
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
+|.++. ++..+|.+....+ +++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+
T Consensus 334 d~~Da~----a~~~~g~~~~~~~-~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 334 TTVDGK----ILAIMGLITGLSG-QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCCCHH----HHHHHHHHHHhhc-chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 888844 5566888888888 89999999999999999999999999999999999999999999999998876554
Q ss_pred HHHHHHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12713 208 RAQRHFV-VHKMIVPGDRERVEQSLKEFRN 236 (551)
Q Consensus 208 ~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~ 236 (551)
-...-++ .|.- ...+.|+..|-+
T Consensus 409 ~~~~~~~~~~~~------~~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVP------NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcC------CchhhhHHHHhh
Confidence 4333322 2222 456666666654
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.06 E-value=5.5e-10 Score=101.13 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=103.5
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC--Cc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS--SN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKI 134 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 134 (551)
.++.+-..|..+-..|++++|...|.++....- ++ .....++...+.++.+. ++++|+.++++++.+ ..+++..
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456677778888889999999999999865432 11 23456666666666554 999999999999986 3445555
Q ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy12713 135 KVNAHIKRAVVHLHA-ASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALN 201 (551)
Q Consensus 135 ~~~~~~~la~~~~~~-~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 201 (551)
....+..+|.+|... | ++++|+++|++++...... ..++..+|.++...|+|++|++.|+++....
T Consensus 113 aA~~~~~lA~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 567888899999998 8 9999999999998863222 4567788889999999999999998887654
No 158
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.05 E-value=1.7e-06 Score=77.81 Aligned_cols=226 Identities=22% Similarity=0.292 Sum_probs=161.2
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh--cCCCCchhHHHHHHHHHHHHHHhcC
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE--DTSVDPKIKVNAHIKRAVVHLHAAS 151 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~ 151 (551)
.+.+..+...+...+...+.. .........+..+...+++..+...+..... ..+.. ...+...+..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~- 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL----AEALLNLGLLLEALG- 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHHHh-
Confidence 467777777788777777640 0256777788888888888888888888776 33333 445666888888888
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQ-IYCLFGQYEEALRNLDKTIALNPN---FHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
++..++..+..++...+.........+. ++...|+++.|...+.+++...|. ........+..+... +++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 183 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL------GRY 183 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh------cCH
Confidence 8888888888888877776555555555 788888888888888888776652 333333333322233 777
Q ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
+.++..+.+++...+. ....+..++..+...++++.|...+..++...|.....+...+..+. ..+.++++...+.++
T Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 262 (291)
T COG0457 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHH
Confidence 7888888888877777 57777777777777777788888888877777776666666666656 467777777777777
Q ss_pred HhcCcC
Q psy12713 307 ISIDKS 312 (551)
Q Consensus 307 ~~~~~~ 312 (551)
+...|.
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHhCcc
Confidence 777765
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=2.6e-08 Score=96.81 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713 262 DGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNK 339 (551)
Q Consensus 262 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 339 (551)
..+.....+++.. +|.++.++..+|..... .|++++|...+++++.++| +..+|..+|.++...|+.++|++.|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444432 44445555555555444 5666666666666666666 355666666666666666666666666
Q ss_pred hcccccCHHH
Q psy12713 340 ALPLARDEAE 349 (551)
Q Consensus 340 a~~~~~~~~~ 349 (551)
|+.++|.++.
T Consensus 479 A~~L~P~~pt 488 (517)
T PRK10153 479 AFNLRPGENT 488 (517)
T ss_pred HHhcCCCCch
Confidence 6666666554
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=6.9e-09 Score=86.55 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+..++.+|..+...|++++|+.+|++++...|+.+....++..+|.++...|++++|+..+++++...|.+. .++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP----SAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHH
Confidence 6778999999999999999999999999988775323467999999999999999999999999999999874 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 204 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 204 (551)
..+|.++...| +...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g-~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRG-EKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcC-ChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 66999999999 87776666555432 3677888888888888876
No 161
>KOG1070|consensus
Probab=99.04 E-value=2.1e-07 Score=95.18 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=153.2
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-cCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 80 AIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE-DTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA 158 (551)
Q Consensus 80 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~ 158 (551)
..+-|.+.+..+|+ ....|......+...++.++|.+.+++++. +++...+-..+.|..+-+....-| .-+.-.+
T Consensus 1443 saeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~k 1518 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKK 1518 (1710)
T ss_pred CHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHH
Confidence 34556667777777 677777777777777888888888888776 355544444555555555555556 6666667
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713 159 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 238 (551)
.|++|.+... ...++..|..+|...+++++|.++++..++...+....|...+..+++. ++-+.|...+.+++
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~------ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ------NEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc------cHHHHHHHHHHHHH
Confidence 7777766532 2456677777777777788888888777777766677777777555554 77777777777777
Q ss_pred HhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713 239 DTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310 (551)
Q Consensus 239 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 310 (551)
+.-|. +.+.....|.+-++.|+.+.+...|+..+...|...+.|..+...-.. .|+.+-+...|++++...
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCCHHHHHHHHHHHHhcC
Confidence 77776 566666777777777777777777777777777777777777666444 777777777777777653
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=6.6e-10 Score=80.01 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=49.9
Q ss_pred ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 335 (551)
.|+++.|+..++++++..|. +...++.+|.++++ .|++++|+.++++ ...+|.++...+.+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666666663 34455556666666 6666666666666 55556555666666666666666666666
Q ss_pred HHHHh
Q psy12713 336 CFNKA 340 (551)
Q Consensus 336 ~~~~a 340 (551)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66653
No 163
>KOG0543|consensus
Probab=99.04 E-value=1.5e-08 Score=90.68 Aligned_cols=133 Identities=23% Similarity=0.335 Sum_probs=97.5
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCC----C-------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSV----D-------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~-------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~ 170 (551)
-..|..+++.|+|..|...|++++..-+. + ......++.+++.|+.+++ +|..|+..+++++..+|+|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~-~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK-EYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh-hHHHHHHHHHHHHhcCCCc
Confidence 34455666666666666666665553211 1 1123447788999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH-HHHHHHHHHHHHhC
Q psy12713 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV-EQSLKEFRNFVDTH 241 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~ 241 (551)
..+++..|.++..+|+++.|+..|++++++.|.+..+...+..+.-+. ..+ +...+.|..++...
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~------~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI------REYEEKEKKMYANMFAKL 356 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999988888777666555 333 33356666666543
No 164
>KOG0543|consensus
Probab=99.03 E-value=9.6e-09 Score=91.93 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT 128 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 128 (551)
+...-..|..+++.|+|..|...|++++..-+.. .....++.+++.|+.++++|.+|+....+++..+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3445567899999999999999999988754421 3456788999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHH-HHHHHHHHhcCC
Q psy12713 129 SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEA-LRNLDKTIALNP 202 (551)
Q Consensus 129 ~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~l~~~~ 202 (551)
|+| ..+++..|.++...| +++.|+..|++++++.|.|..+...+..+..+...+.+. .+.|.+++...+
T Consensus 288 ~~N----~KALyRrG~A~l~~~-e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 288 PNN----VKALYRRGQALLALG-EYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCc----hhHHHHHHHHHHhhc-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999 568888999999999 999999999999999999999999998888877766654 778888876544
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=3.2e-08 Score=96.24 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=114.6
Q ss_pred cchHHHHHHHHHHHhhh---cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--------chHHHHHHHHHhhc
Q psy12713 59 SHELDLLSKAKRAFEHE---DYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ--------STKAIEDLTQLVED 127 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~ 127 (551)
..+-.++.+|..++..+ ++..|+.+|+++++.+|+ .+.++..++.++..... ...+.....+++..
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 36778899999887654 488999999999999999 89999998888765432 33455556665554
Q ss_pred --CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 128 --TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 128 --~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
.|.++ .++..+|......| ++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++|.++
T Consensus 414 ~~~~~~~----~~~~ala~~~~~~g-~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLP----RIYEILAVQALVKG-KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCCh----HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 44443 35566888888889 99999999999999999 578999999999999999999999999999999987
Q ss_pred HH
Q psy12713 206 VA 207 (551)
Q Consensus 206 ~~ 207 (551)
..
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 53
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.02 E-value=8.6e-09 Score=77.11 Aligned_cols=95 Identities=19% Similarity=0.371 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV 254 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 254 (551)
+.+|.++...|++++|+..++++++..|.+...+..++.++... +++++|+..+++++...|.+..++..+|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL------GKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 33444444444444444444444444444333333333333333 444444444444444444444444444444
Q ss_pred HHhccCHHHHHHHHHHHHhcC
Q psy12713 255 LVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~ 275 (551)
+...|++++|...+.+++...
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccC
Confidence 444444444444444444433
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.01 E-value=9.2e-10 Score=79.27 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 191 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 191 (551)
|+++.|+..++++++..|.++ ....++.+|.+++..| ++++|+..+++ ...+|.++...+.+|.++..+|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~-~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQG-KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTT-HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCC-CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 444444444444444444321 1223333444444444 44444444444 4444444444444444444444444444
Q ss_pred HHHHH
Q psy12713 192 RNLDK 196 (551)
Q Consensus 192 ~~~~~ 196 (551)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 44443
No 168
>KOG4648|consensus
Probab=99.01 E-value=2.4e-10 Score=98.71 Aligned_cols=228 Identities=14% Similarity=0.049 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQI 180 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 180 (551)
+-..|..|+++|.|++|+.+|.+++...|.++....+ .+..|++.. .+..|...+..++.++.....+|..+|..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~N----RA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHIN----RALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhh----HHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777654444 777777777 77777777777777777777777777777
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---------HHHH
Q psy12713 181 YCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---------CTLF 251 (551)
Q Consensus 181 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~l 251 (551)
-..+|...+|.+.++.++.+.|++.+....++.+. ...++. -+.+..|....+ .-.-
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----------Sl~E~~----I~~KsT~G~~~A~Q~~~Q~l~~K~~ 240 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARIN----------SLRERK----IATKSTPGFTPARQGMIQILPIKKP 240 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc----------chHhhh----HHhhcCCCCCccccchhhhccccCc
Confidence 77777788888888888877777655443333221 111110 011111111111 1223
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|..+...|.++.++.++.+.+....++.....+ +..+.. ..+++.++....+++..+|.........|.+-.-.|...
T Consensus 241 G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~K-I~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~ 318 (536)
T KOG4648|consen 241 GYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDK-IFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSK 318 (536)
T ss_pred chhhhhhhccccceeEeeccccccCccccCccc-HHHHHH-HhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhh
Confidence 555667778888888877766655554443333 444444 677888888888888887776666666677777778888
Q ss_pred HHHHHHHHhcccccCHHH
Q psy12713 332 EAVKCFNKALPLARDEAE 349 (551)
Q Consensus 332 ~A~~~~~~a~~~~~~~~~ 349 (551)
++...++.++.+.|.+..
T Consensus 319 E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 319 EVKPTKQTAVKVAPAVET 336 (536)
T ss_pred hcCcchhheeeecccccc
Confidence 899999999998887654
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.01 E-value=7.8e-10 Score=76.17 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=61.3
Q ss_pred hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
...|++++|+..|++++..+|+++++++.+|.+|...|++++|...+++++..+|+++..+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 3568999999999999999999999999999999999999999999999999999998888777653
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.00 E-value=1.4e-06 Score=78.21 Aligned_cols=226 Identities=25% Similarity=0.383 Sum_probs=191.9
Q ss_pred hCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHhCCHH
Q psy12713 111 TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK--VDPNVADSYYQRGQIYCLFGQYE 188 (551)
Q Consensus 111 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 188 (551)
.+.+..+...+...+...+.... .......+..+...+ ++..+...+..... ..+.....+...+..+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDL--AGLLLLLALALLKLG-RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccc--hHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 46777788888888877665311 234456888999999 99999999999997 68888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhhcCCChhHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHhccCHHHH
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHF-VVHKMIVPGDRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGA 264 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A 264 (551)
.++..+..++...+.........+. ++... |+++.|...+.+++...| .........+..+...++++.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 113 EALELLEKALALDPDPDLAEALLALGALYEL------GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 9999999999988877555554554 55555 999999999999988776 3556677777778899999999
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 265 EEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 265 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+..+.+++...+. ....+..++..+.. .++++.|...+..++...|.....+..++..+...+.++++...+.+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 68899999999666 899999999999999999987788888888888778899999999999999
Q ss_pred ccC
Q psy12713 344 ARD 346 (551)
Q Consensus 344 ~~~ 346 (551)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 887
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=1e-08 Score=80.54 Aligned_cols=99 Identities=12% Similarity=-0.094 Sum_probs=65.1
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
+..+..+..|..++..|++++|..+|+-....+|. +.+.+..+|.|+..+++|++|+..|..+..+++++|.+...
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~- 110 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF- 110 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch-
Confidence 35566666666666666666666666666666665 66666666666666666666666666666666666554333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
.|.|++..| +.+.|...|+.++.
T Consensus 111 ---agqC~l~l~-~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 ---TGQCQLLMR-KAAKARQCFELVNE 133 (165)
T ss_pred ---HHHHHHHhC-CHHHHHHHHHHHHh
Confidence 666666666 66666666666665
No 172
>KOG1941|consensus
Probab=99.00 E-value=1.1e-07 Score=83.35 Aligned_cols=275 Identities=13% Similarity=0.087 Sum_probs=191.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhcCCC---chhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHH
Q psy12713 68 AKRAFEHEDYLTAIRHCTEEIESTSS---NHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRA 143 (551)
Q Consensus 68 a~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la 143 (551)
+......|.|++++.+--..++...+ +....+++..++..+.+..++.+++.+-+..+......+ ..-..+...+|
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 44556777777776655444433211 134678899999999999999999999988887644333 22234566699
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----CCHHHHHHHHH
Q psy12713 144 VVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNP----NFHVARAQRHF 213 (551)
Q Consensus 144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~~ 213 (551)
..+..++ .++++++.|+.+++...++ ..++..+|.++....++++|.-+..++.++.. ++...-+....
T Consensus 130 ~Ahlgls-~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 130 NAHLGLS-VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHhhhHH-HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 9999999 9999999999999875443 35788999999999999999999999987743 22232222222
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHH
Q psy12713 214 VVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASL 281 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~ 281 (551)
.+.....+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+.+...-.. ...+
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~a 288 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEA 288 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2222245555688889999998887653 223466778999999999999999999998765322 1334
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 282 YVHRAMLMLQ----ARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 282 ~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+...+.+... ..+.-=.|++.-++++++...- ...+..++.+|..+|.-++-...+.++-+.
T Consensus 289 l~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 289 LDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4555555322 1122234777777777664322 356778999999999888877777775443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=1e-08 Score=85.19 Aligned_cols=122 Identities=12% Similarity=0.147 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
.+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++.. .|++++|+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~ 92 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKAL 92 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHH
Confidence 3555555555554455444 5677899999999999999999999999887653 4588999999777 99999999
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHhcccccCHH
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEV-------QRGRLE-------EAVKCFNKALPLARDEA 348 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~ 348 (551)
..+++++...|.....+..+|.++. ..|+++ +|..+|++++..+|++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999998888888888 777766 55666666777777543
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=1.1e-08 Score=80.36 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=94.7
Q ss_pred hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
+.++..+..+..|.-++..|++++|...|+-....+|.++..+..+|.++-. +++|++|+..|..+..+++++|...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence 3344456778889999999999999999999999999999999999999555 999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 320 LGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 320 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.|.|+...|+.+.|+..|+.++. .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999999988 455544
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.93 E-value=1.2e-06 Score=74.18 Aligned_cols=181 Identities=19% Similarity=0.194 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV---ARAQRH 212 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~ 212 (551)
++.-|...++.| ++++|+..|+.+...+|.. ..+...++..+++.+++++|+...++-+.+.|.++. +++..|
T Consensus 37 LY~~g~~~L~~g-n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKG-NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 344444444444 4444444444444444433 234444444444444444444444444444443322 222333
Q ss_pred HHHHHh--hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 213 FVVHKM--IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290 (551)
Q Consensus 213 ~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (551)
.+++.. ....+..-...|+..|+..+...|++.-+-.....+ ..++..+ ..--..+|..|+
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~IaryY~ 178 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIARYYL 178 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHHHHH
Confidence 333322 444455666777788888888888764221111100 0000000 111123344444
Q ss_pred HhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 291 QARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 291 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
+ .|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|.+.-.
T Consensus 179 k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 179 K-RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred H-hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 4 555555555555555554433 3445555555555555555554443
No 176
>KOG1070|consensus
Probab=98.93 E-value=4.1e-07 Score=93.07 Aligned_cols=226 Identities=15% Similarity=0.216 Sum_probs=186.0
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC----hhHHHHHHHHHHHhCC
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV----ADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~~~~~ 186 (551)
++-.+..+.|++.+..+|+....+ +..-...++.+ +.++|.+..++++.. ++.. ..+|..+-++...-|.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~W----I~YMaf~Lels-EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ 1512 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILW----IRYMAFHLELS-EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT 1512 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHH----HHHHHHHhhhh-hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc
Confidence 334456677888888899985544 44777788889 999999999999974 4433 3456666666666677
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHH
Q psy12713 187 YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE 266 (551)
Q Consensus 187 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 266 (551)
-+.-.+.|+++.+.+. ....+..+..+|... +.+++|.++++.+++...+....|..+|..+++..+-+.|..
T Consensus 1513 eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCD-AYTVHLKLLGIYEKS------EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence 7888899999988764 344566666555555 999999999999999999889999999999999999999999
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 267 YFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
.+.+|++.-|. +.......+.+-++ .|+.+.+...|+..+...|.....|.-+...-.+.|+.+.+...|++++.+.
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 99999999888 66677778888777 9999999999999999999999999999999999999999999999999876
Q ss_pred cCHHHH
Q psy12713 345 RDEAEL 350 (551)
Q Consensus 345 ~~~~~~ 350 (551)
-.-..+
T Consensus 1665 l~~kkm 1670 (1710)
T KOG1070|consen 1665 LSIKKM 1670 (1710)
T ss_pred CChhHh
Confidence 444443
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.93 E-value=4.2e-08 Score=86.39 Aligned_cols=109 Identities=18% Similarity=0.094 Sum_probs=89.8
Q ss_pred HHHHHHHHHHH-HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhH
Q psy12713 98 ALARLLRATVY-IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADS 173 (551)
Q Consensus 98 ~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 173 (551)
....+..|..+ +..|++++|+..|+..++..|+++.. ..+++++|.+|+..| ++++|+..|+++++.+|++ +++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a-~~A~y~LG~~y~~~g-~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ-PNANYWLGQLNYNKG-KKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCCcchhHH
Confidence 35667777766 56789999999999999998887532 467788999999999 9999999999999887774 778
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVAR 208 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 208 (551)
++.+|.++..+|++++|...|+++++..|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 88889999999999999999999999888876543
No 178
>KOG3081|consensus
Probab=98.88 E-value=1.9e-06 Score=72.56 Aligned_cols=238 Identities=14% Similarity=0.137 Sum_probs=173.4
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+...+..++.++..|.+...+.-....- .| ...+...++.....-++.++-+.-..+.+........ ...
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~----~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn--~i~ 110 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGK--AT----PLQAVRLLAEYLELESNKKSILASLYELVADSTDGSN--LID 110 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccccc--CC----hHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchh--HHH
Confidence 356667777888888898877665443322 22 3455666666666666666666655554443322222 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM 218 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 218 (551)
...-|.++..-| ++++|....... .+.++...-..++.++.+.+-|...++++.+++.+.. ..+++..+.
T Consensus 111 ~l~aa~i~~~~~-~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv-- 180 (299)
T KOG3081|consen 111 LLLAAIIYMHDG-DFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWV-- 180 (299)
T ss_pred HHHhhHHhhcCC-ChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHH--
Confidence 334567788888 999999887763 3456677777899999999999999999998876543 344554444
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
.+....+...+|.-+|++.-...|..+...+..+.+++.+|+|++|...++.++..++++++.+.++..+... .|...+
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~ 259 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAE 259 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChH
Confidence 2233446799999999999998999999999999999999999999999999999999999999999888666 777655
Q ss_pred H-HHHHHHHHhcCcCCHH
Q psy12713 299 A-IKLIEKAISIDKSCMF 315 (551)
Q Consensus 299 A-~~~~~~~~~~~~~~~~ 315 (551)
+ .+.+.+....+|+++.
T Consensus 260 ~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 260 VTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHhcCCcchH
Confidence 4 4566666677787654
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.87 E-value=1.9e-05 Score=70.46 Aligned_cols=271 Identities=14% Similarity=0.117 Sum_probs=166.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
+..|.+....||-..|.+.-.+.-..-.. ...+.++..-+..-.-.|+++.|.+-|+.++. + |+.....+..+-.
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llss-DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-d---PEtRllGLRgLyl 162 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSS-DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-D---PETRLLGLRGLYL 162 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-C---hHHHHHhHHHHHH
Confidence 44566666777777777776665422211 01455666667777778888888888887765 2 3333333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcC
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL---NPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~ 221 (551)
--...| ..+.|+.+-+.+-...|.-+.++...-...+..|+++.|++..+..... .++..+ ...+.++...-..
T Consensus 163 eAqr~G-areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae--R~rAvLLtAkA~s 239 (531)
T COG3898 163 EAQRLG-AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE--RSRAVLLTAKAMS 239 (531)
T ss_pred HHHhcc-cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--HHHHHHHHHHHHH
Confidence 445667 8888888888888888888877777777777888888888887765543 222111 1111111111000
Q ss_pred CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHH-HH
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE-AI 300 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-A~ 300 (551)
.-..+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|.- .++.. .++.+ .|+... =+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~l--Y~~ar-~gdta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIALL--YVRAR-SGDTALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHHH--HHHhc-CCCcHHHHH
Confidence 011346777777788888888888877888888888888888888888887776653 22211 11122 333221 12
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
+-.++...+.|++.+.....+..-..-|++..|..--+.+....|..
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE 362 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence 22233344566666777777777777777777766666666666654
No 180
>KOG4234|consensus
Probab=98.86 E-value=8.1e-08 Score=76.78 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP-KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
..+-.-|.-++..|+|++|..-|..++..-|.-+ ..+.-.|.+.|.+.+.++ .++.|+..+.++++++|.+..++..+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-KWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-hHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3445557778888888888888888888877543 344456677888888888 88999999999999998888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
+.+|.++.++++|+..|.++++.+|....+.-...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 88888888899999999999888888776655444
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.86 E-value=8.3e-08 Score=72.80 Aligned_cols=100 Identities=16% Similarity=-0.007 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
..|..|..+-..|+.++|+.+|++++......+....+++.+|.++..+|++++|+..+++++...|+++.. ......+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHH
Confidence 345555555555566666666665555543333344555555555555566666655555555555542211 1122235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q psy12713 143 AVVHLHAASDFTKAFADLDEAE 164 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~ 164 (551)
+.++...| +.++|+..+-.++
T Consensus 82 Al~L~~~g-r~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLG-RPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCC-CHHHHHHHHHHHH
Confidence 55555555 5555555555444
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.85 E-value=8.2e-09 Score=72.18 Aligned_cols=67 Identities=31% Similarity=0.533 Sum_probs=62.6
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 525 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 525 (551)
+...+++++|+..+++++..+|+++..++.+|.++..+|++++|+..|+++++..|+++.+...++.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5667999999999999999999999999999999999999999999999999999999988776654
No 183
>KOG2053|consensus
Probab=98.85 E-value=2e-05 Score=77.77 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=169.3
Q ss_pred HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q psy12713 109 IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE 188 (551)
Q Consensus 109 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 188 (551)
...+++.+|.....+.++..|+.+... ...|.++.++| +.++|..+++..-...+++...+..+-.+|..+|+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~----vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAK----VLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHH----HHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 456889999999999999999985544 44899999999 9999998888877778888889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccCHH-----
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFD----- 262 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~----- 262 (551)
+|..+|++++..+|+ ......+-.++.+. +.|.+-.+.--+..+..|+++..+.....+.++ ....+
T Consensus 95 ~~~~~Ye~~~~~~P~-eell~~lFmayvR~------~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELLYHLFMAYVRE------KSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999999 77777777666666 777777776667777888887654444444433 22222
Q ss_pred ----HHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH-HHh-cCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713 263 ----GAEEYFNRSIRVD-PEN--ASLYVHRAMLMLQARGNVDEAIKLIEK-AIS-IDKSCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 263 ----~A~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 333 (551)
-|...+++.++.. +-. .++...+- + +..+|++++|.+++.. ..+ ..+.+...-...+..+...++|.+-
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~-i-L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLL-I-LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHH-H-HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 3555666666665 322 22222222 2 3338999999999843 333 3444455555677888899999999
Q ss_pred HHHHHHhcccccCH
Q psy12713 334 VKCFNKALPLARDE 347 (551)
Q Consensus 334 ~~~~~~a~~~~~~~ 347 (551)
.+.-.+++...+++
T Consensus 246 ~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 246 FELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999999887
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.81 E-value=1.3e-07 Score=87.77 Aligned_cols=117 Identities=18% Similarity=0.315 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 303 (551)
Q Consensus 224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 303 (551)
.++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..++. .++++.|+.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA 257 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA 257 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 47899999999999888865 566789999999999999999999999999999999999998777 99999999999
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 304 EKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
++++...|++...|..|+.+|...|++++|+..++.+--..
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999998888655443
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=1.8e-07 Score=80.02 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHH
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQR 177 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 177 (551)
.+..|.-++..|+|..|...|..-++..|+++.. .++++++|.+++.+| +++.|...|..+.+..|++ ++.++.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~-~nA~yWLGe~~y~qg-~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT-PNAYYWLGESLYAQG-DYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc-chhHHHHHHHHHhcc-cchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 6778888888888888888888888888876544 678888888888888 8888888888888877665 6778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
|.+...+|+.++|...|+++++..|+...+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88888888888888888888888888766543
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.78 E-value=2.1e-07 Score=70.60 Aligned_cols=99 Identities=20% Similarity=0.048 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHH
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN---VADSYY 175 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~ 175 (551)
.+++.+|.++-..|+.++|+..|++++......+ ....+++.+|.++...| ++++|+..+++.+...|+ +.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG-~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLG-RYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 4788899999999999999999999999765543 34568889999999999 999999999999998888 677888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 176 QRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 176 ~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999887774
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.78 E-value=3.7e-07 Score=70.26 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh---hH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA---DS 173 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~ 173 (551)
.+..++.-|...+..|+|++|++.|+.+....|..+.. ..+.+.++.+|+..+ ++++|+..+++.++++|.++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL~l~yayy~~~-~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQLDLAYAYYKQG-DYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCCCccHH
Confidence 46778889999999999999999999999988876544 467788999999999 99999999999999998885 46
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 246 (551)
++..|.+++.+.. ..+...... -...+....|...|++++...|++..
T Consensus 87 ~Y~~gL~~~~~~~-----~~~~~~~~~--------------------drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDE-----GSLQSFFRS--------------------DRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhh-----hHHhhhccc--------------------ccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 7888888777654 111111111 11225556677777777777776643
No 188
>KOG2471|consensus
Probab=98.77 E-value=4.4e-06 Score=76.45 Aligned_cols=298 Identities=17% Similarity=0.115 Sum_probs=189.0
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHH-HHHhCCchHHHHHHHHHhhc-----CCC
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATV-YIFTSQSTKAIEDLTQLVED-----TSV 130 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~-----~~~ 130 (551)
.++.-..+...+...+..++|+....+++..-.++.. ...+++..+.+ |++.|.... ....+....+ .|.
T Consensus 13 ~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~---~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 13 GEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGES---SGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPG 88 (696)
T ss_pred ccchhHHHHHHHHhccCCcchHHHHHHHHHHHhcccc---ccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhcccc
Confidence 3445566778888889999999999999988887776 44445666655 455554432 2222222221 111
Q ss_pred C------chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 131 D------PKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV-----ADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 131 ~------~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
+ ..-....+++.|.+++... .+..|++........-... ...-+..-..+.....-++|+.++.-.-+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~-~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHE-ENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHh-hcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0111235677888888888 8888888777665442211 11223334455555666666665433221
Q ss_pred c------CC--CCHHHH-------------------HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 200 L------NP--NFHVAR-------------------AQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 200 ~------~~--~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
+ .+ ++...- .......+....+....+...+..-.+.+.....+.+.+....+
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKs 247 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKS 247 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHH
Confidence 1 11 000000 00111111112222335666666666666667778888899999
Q ss_pred HHHHhccCHHHHHHHHHHH-HhcCCC------C--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------C----
Q psy12713 253 QVLVDQEDFDGAEEYFNRS-IRVDPE------N--ASLYVHRAMLMLQARGNVDEAIKLIEKAISI---------D---- 310 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~-~~~~~~------~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---------~---- 310 (551)
..++..|++.+|.+.+... +...|. . ...|.++|.++++ .|.|..+..+|.++++. .
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 9999999999999887654 222232 1 2356789999888 99999999999999851 1
Q ss_pred -----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHH
Q psy12713 311 -----KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAA 360 (551)
Q Consensus 311 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (551)
....+..++.|..|...|+.-.|.++|.+++.....++.+|.-++-+...
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 12367889999999999999999999999999998888888777766433
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.76 E-value=3.2e-07 Score=85.15 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=93.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
+-.++...++++.|+..+++..+.+|+ ....++.++... ++..+|++.+.+++...|.+...+...+..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~------~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM------NEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc------CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455567788888888887777664 334455555444 67778888888888888888888888888888
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
..++++.|+...++++...|++...|..++.+|.. .|+++.|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 88888889998888888888888888888888777 888888888777543
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.73 E-value=7e-08 Score=66.32 Aligned_cols=62 Identities=27% Similarity=0.383 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
.|++++|+..|++++..+|++..++..+|.++...|++++|...+++++...|+++.++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 68888888888888888888888888888888888888888888888888888876655443
No 191
>KOG4555|consensus
Probab=98.72 E-value=7.1e-07 Score=66.05 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
...+-.+|..+...|+.+.|++.|.+++...|. .+.++.+.+.++.-+|+.++|+..+++++++..........++.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 344556788899999999999999999999999 99999999999999999999999999999998777777778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPN 169 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~ 169 (551)
..|.+|..+| +.+.|...|+.+-++...
T Consensus 120 QRg~lyRl~g-~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 120 QRGLLYRLLG-NDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHhC-chHHHHHhHHHHHHhCCH
Confidence 9999999999 999999999988776543
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.71 E-value=0.00023 Score=65.16 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-.+..+|..+..++++.+|..+|.++.+...++ ...-+++.++....+-+++.+.-...+...-+..|..+.. .
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l----~ 82 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYL----P 82 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHH----H
Confidence 345667889999999999999999988776553 1122444444444455666666666666555666655433 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------------hhH--HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV-------------ADS--YYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~--~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
...|...++.+ ++++|++.+......-.+. ++. -...+.++...|.+.++...+++.+..
T Consensus 83 LF~~L~~Y~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 83 LFKALVAYKQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34778888888 8999888887665542111 111 134577888889999988888877653
No 193
>KOG3617|consensus
Probab=98.70 E-value=3.3e-05 Score=75.43 Aligned_cols=170 Identities=17% Similarity=0.067 Sum_probs=112.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVV 145 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~ 145 (551)
.-|......|-.++|..+|++.-+ +-.+-..|...|.+++|.+..+.--.+ -.-..|++.+..
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRi------HLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRI------HLRNTYYNYAKY 867 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccce------ehhhhHHHHHHH
Confidence 345556667777777777765432 223345566677777777665432111 123467788888
Q ss_pred HHHhcCCHHHHHHHHHHH----------HhcCCC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 146 HLHAASDFTKAFADLDEA----------EKVDPN----------VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 146 ~~~~~~~~~~A~~~~~~~----------~~~~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
+...+ +.+.|+++|+++ +..+|. ++..|...|......|+.+.|+.+|..+-..
T Consensus 868 Lear~-Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----- 941 (1416)
T KOG3617|consen 868 LEARR-DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----- 941 (1416)
T ss_pred HHhhc-cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----
Confidence 88888 999999999874 233443 3456667788888888888888888776432
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
+.+. .+..-+|+.++|-...++ ..+..+.+.+|+.|...|++.+|+..|.++-
T Consensus 942 ---fs~V------rI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 ---FSMV------RIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhe------eeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1111 445555777777665543 4566778888888888888888888877754
No 194
>KOG4234|consensus
Probab=98.69 E-value=5.3e-07 Score=72.23 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+.+-..|..+|..|+|++|..-|..+|...|.. ......+.+.|.+.++++.++.|+..+.+++.++|.. ..++
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty----~kAl 171 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY----EKAL 171 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh----HHHH
Confidence 334445555666666666666666666666553 2233445555666666666666666666666666654 3344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVAD 172 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 172 (551)
...|..|..+. ++++|+..|.+++..+|....
T Consensus 172 ~RRAeayek~e-k~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 172 ERRAEAYEKME-KYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHhCcchHH
Confidence 44566666666 666666666666666665443
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.7e-07 Score=65.46 Aligned_cols=57 Identities=26% Similarity=0.413 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.+++++|+.++++++..+|+++..+..+|.++...|++.+|+..++++++..|++..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 444444444444444444444444444444444444444444444444444444333
No 196
>KOG2300|consensus
Probab=98.66 E-value=0.00034 Score=64.48 Aligned_cols=133 Identities=20% Similarity=0.115 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhh--cHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhcC---CCCchhH
Q psy12713 62 LDLLSKAKRAFEHE--DYLTAIRHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVEDT---SVDPKIK 135 (551)
Q Consensus 62 ~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~---~~~~~~~ 135 (551)
.+++..|..+...| +...++++++..+...|.....+.....+|.+++ ...+++.|...++++..+. |...+..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 44555555555555 6666666666666666654444455556665543 4566666666666665542 3333444
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVA----DSYYQRGQIYCLFGQYEEALRNL 194 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~ 194 (551)
..+...++.+|......+..|...+++++++....+ ...+.++.+..-..++..|++.+
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 555666666666554345566666666666654443 23455666666666666666653
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.65 E-value=0.00012 Score=65.61 Aligned_cols=204 Identities=15% Similarity=0.112 Sum_probs=148.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
.|.+-...| +-..|.+.-.++-++-..+ +-++..-++.-.-.|+++.|.+-|+-.+. +|.. .. ..+-.+| .
T Consensus 90 tGliAagAG-da~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-Rl-lGLRgLy---l 162 (531)
T COG3898 90 TGLIAAGAG-DASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RL-LGLRGLY---L 162 (531)
T ss_pred hhhhhhccC-chHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HH-HhHHHHH---H
Confidence 455556667 8888888877776543333 45666667888888999999999988774 3321 11 1111111 2
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCCH-----HHHHHHHHHHHH
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPENA-----SLYVHRAMLMLQ 291 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~-----~~~~~l~~~~~~ 291 (551)
--...|..+.|+.+-+++....|.-+.++...-...+..|+|+.|++..+..... .++.. ..+...+...+
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l- 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL- 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-
Confidence 2234589999999999999999999988888888888999999999998876543 23321 12223333322
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
..+...|...-.++.++.|+...+-..-+..+++.|+..++-..++.+.+..|. ++++..|.
T Consensus 242 -dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~ 303 (531)
T COG3898 242 -DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYV 303 (531)
T ss_pred -cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHH
Confidence 467889999999999999999889899999999999999999999999998886 44555443
No 198
>KOG2796|consensus
Probab=98.54 E-value=0.00038 Score=58.94 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc---------------hhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP---------------KIKVNAHIKRAVVHLHAASDFTKAFADLD 161 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~~~~~A~~~~~ 161 (551)
....|...-.++.++..+++|...+...-+.+..+- -+....-...|.+....| +..+.+.-+.
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lg-npqesLdRl~ 146 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLG-NPQESLDRLH 146 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcC-CcHHHHHHHH
Confidence 566777777778888888888877766555432110 000111122344555566 5555555444
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC
Q psy12713 162 EAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH 241 (551)
Q Consensus 162 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 241 (551)
..... -..+..........+..++.+++-+. .+.+.+..++. ..|.|.-.+..+.+.++.+
T Consensus 147 ~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~ll------G~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 147 KLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLL------GMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHh------cchhhhhhHHHHHHHHHhC
Confidence 33321 11111222222223444444444331 23333443444 3499999999999999988
Q ss_pred -CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713 242 -SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314 (551)
Q Consensus 242 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 314 (551)
|..+.....+|.+.++.|+.+.|..+|+.+-+.. .....+..+.+.+++- .+++..|...+.+++..+|.++
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccchHHHHHHHhhccccCCCch
Confidence 6678888899999999999999999999654322 2234456677777777 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHH
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEA 348 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 348 (551)
.+..+.+.|..-.|+..+|++.++.++...|...
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999999999754
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.54 E-value=3e-05 Score=61.71 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=106.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhccCHH
Q psy12713 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD-THSNVVEACTLFAQVLVDQEDFD 262 (551)
Q Consensus 184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 262 (551)
.=+.+....-..+.+...|.. .-.+.++...... |++.+|...|++++. ...+++..+..+++..+..+++.
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~el------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 69 KLDPERHLREATEELAIAPTV-QNRYRLANALAEL------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHh------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 334444444445555555543 3345566666655 788888887777765 45667778888888888888888
Q ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 263 GAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 263 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
.|...+++..+.+|.. ++....+|.++.. .|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-+...
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8888888888877643 5667777887555 88888888888888888886 777888888888888887776665544
Q ss_pred c
Q psy12713 341 L 341 (551)
Q Consensus 341 ~ 341 (551)
.
T Consensus 220 ~ 220 (251)
T COG4700 220 V 220 (251)
T ss_pred H
Confidence 3
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.52 E-value=5.7e-05 Score=60.21 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=107.3
Q ss_pred HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-CCCCchhHHHHHHHHHHHHHHh
Q psy12713 71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED-TSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~ 149 (551)
..+.=|.+.+..-..+.+...| ...-.+.+|......|++.+|...|++++.- ..+++ ..+..+++..+..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~Ap----Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~ 137 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAP----TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAI 137 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhch----hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhh
Confidence 3444466666666667777777 4666788888888999999999999888873 33443 3455688888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 150 ASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
+ ++..|...+++..+.+|.. ++....+|.++...|.+.+|...|+.++...|+. .+....+..+... |+.
T Consensus 138 ~-~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~q------gr~ 209 (251)
T COG4700 138 Q-EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQ------GRL 209 (251)
T ss_pred c-cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHh------cch
Confidence 8 8999999999888887754 6778888888888888888888888888887753 3333344333333 655
Q ss_pred HHHHHHHHHH
Q psy12713 228 EQSLKEFRNF 237 (551)
Q Consensus 228 ~~A~~~~~~~ 237 (551)
.++...+...
T Consensus 210 ~ea~aq~~~v 219 (251)
T COG4700 210 REANAQYVAV 219 (251)
T ss_pred hHHHHHHHHH
Confidence 5555444433
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.51 E-value=1.7e-07 Score=57.27 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=40.5
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHH
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 525 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 525 (551)
|.+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999999875
No 202
>KOG1586|consensus
Probab=98.49 E-value=2.2e-05 Score=64.88 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHhcCCHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----P-ENASLYVHRAMLMLQARGNVDE 298 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~~~~~~~ 298 (551)
+.+++|.++|.++- ..|...++|..|=..|.++-+.. . +-...+...+.+ ++ .+++++
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-yk-k~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YK-KVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hh-ccChHH
Confidence 67888888877653 34444455555555555544321 1 123455556666 66 789999
Q ss_pred HHHHHHHHHhcCcCCHH------HHHHHHHHHHHh-CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhc
Q psy12713 299 AIKLIEKAISIDKSCMF------AYETLGTIEVQR-GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYN 371 (551)
Q Consensus 299 A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (551)
|+.++++++++..+-.. .+..+|.+|... .++++|+.+|+++-+-...+......
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA------------------ 153 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA------------------ 153 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH------------------
Confidence 99999999988655433 344788888765 89999999999987655443321100
Q ss_pred cccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhcc
Q psy12713 372 IKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGN 451 (551)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (551)
-+.+-
T Consensus 154 -------------------NKC~l-------------------------------------------------------- 158 (288)
T KOG1586|consen 154 -------------------NKCLL-------------------------------------------------------- 158 (288)
T ss_pred -------------------HHHHH--------------------------------------------------------
Confidence 00000
Q ss_pred chhhhchhhhhcChhHHHHhhHHhhccCCCc-------hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHH
Q psy12713 452 LENESGQKHAASDFTKAFADLDEAEKVDPNV-------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 521 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 521 (551)
..+...-+.++|.+|+..|+++....-++ -+.++.-|.|++...+.-.+...+++-.+++|.+.+.+-
T Consensus 159 --KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 159 --KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 00000123478999999999988765443 345677889999999999999999999999999876543
No 203
>KOG1585|consensus
Probab=98.48 E-value=8.5e-05 Score=62.01 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHh
Q psy12713 225 ERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQA 292 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 292 (551)
-++++|++.|++++.+...+ .+.+...++++.+..++.+|-..+.+-... .++....+.....+++.
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~- 202 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY- 202 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh-
Confidence 56777888887777654332 345667788888888998888777664332 23333445555555565
Q ss_pred cCCHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 293 RGNVDEAIKLIEKAISID----KSCMFAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 293 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
..+|..|..+++...++. |++..+..+|-..| ..|+.++..+.+.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 779999999998876653 44555666665554 5677777666654
No 204
>KOG2796|consensus
Probab=98.48 E-value=0.0005 Score=58.24 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---------------hhH-HHHHHHHHHHHHHhCCchHHHHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---------------HTK-ALARLLRATVYIFTSQSTKAIEDLT 122 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 122 (551)
+....|-.+-..+.+...+++|..-+...-..+..+ ... ......-|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 355666677777788888888887766554443221 001 1223344666677788777766655
Q ss_pred HHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Q psy12713 123 QLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN- 201 (551)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~- 201 (551)
.....- ..+........ ..+..+..+++-+ ..+.+.+..++...|+|.-....+.++++.+
T Consensus 147 ~L~~~V-----------~~ii~~~e~~~-~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~ 208 (366)
T KOG2796|consen 147 KLKTVV-----------SKILANLEQGL-AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP 208 (366)
T ss_pred HHHHHH-----------HHHHHHHHhcc-chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence 543321 00222222222 3345555555543 2355666777777777777777777777766
Q ss_pred CCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713 202 PNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 275 (551)
|..+.....++.+..+. |+.+.|..+|++.-+.. ....-+..+.+.++.-.+++..|...+.+++..+
T Consensus 209 e~~p~L~s~Lgr~~MQ~------GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQI------GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred cccHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC
Confidence 44555566666555555 77777777777544322 1223456677788888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 276 PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
|.++.+..+.+.|.+- .|+...|++.++.++++.|..
T Consensus 283 ~~~~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred CCchhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999777 899999999999999998874
No 205
>KOG3617|consensus
Probab=98.48 E-value=0.00012 Score=71.79 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=123.5
Q ss_pred HHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy12713 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183 (551)
Q Consensus 104 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 183 (551)
.|.....+|-.++|...|.+.-..+ .+-..|...| .+++|.+..+.--.++ -...|++.+..+..
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~D------------LlNKlyQs~g-~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRYD------------LLNKLYQSQG-MWSEAFEIAETKDRIH--LRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH------------HHHHHHHhcc-cHHHHHHHHhhcccee--hhhhHHHHHHHHHh
Confidence 3455566777777777777654421 1444566666 7777776655322221 23467777777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHH
Q psy12713 184 FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG 263 (551)
Q Consensus 184 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 263 (551)
.++.+.|+++|+++-.. .. .... -+.++..+++.|-+ ...++..|...|..+...|+.+.
T Consensus 871 r~Di~~AleyyEK~~~h--af-ev~r-------------mL~e~p~~~e~Yv~----~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVH--AF-EVFR-------------MLKEYPKQIEQYVR----RKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred hccHHHHHHHHHhcCCh--HH-HHHH-------------HHHhChHHHHHHHH----hccchHHHHHHHHHHhcccchHH
Confidence 77888888887765311 00 0000 01233333333321 12345677778888999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 264 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 264 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
|+.+|..+-. |+.+..+..- +|+.++|-.+.++ ..+..+.+.+|..|...|+..+|+..|.+|-..
T Consensus 931 Al~~Y~~A~D--------~fs~VrI~C~-qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 931 ALSFYSSAKD--------YFSMVRIKCI-QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHhhh--------hhhheeeEee-ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999987643 4555555444 7999998876664 456788999999999999999999999887553
No 206
>KOG2471|consensus
Probab=98.46 E-value=0.00036 Score=64.42 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=157.0
Q ss_pred CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHH---hhc---
Q psy12713 56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQL---VED--- 127 (551)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~--- 127 (551)
+.....-.++..|..++....+..|++.....+...... ......-+..-..+....+.++|+.++.-. +..
T Consensus 95 d~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 95 SLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334456778889999999999999998877766543321 112222333334455556666776654332 221
Q ss_pred CCC------C------c-----------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy12713 128 TSV------D------P-----------KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLF 184 (551)
Q Consensus 128 ~~~------~------~-----------~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 184 (551)
.+. + + .............+.+.. +...+....+.+.....+.+.+....++.++..
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~-~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTR-NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHH-HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh
Confidence 110 0 0 011123333455667777 788888888888888888899999999999999
Q ss_pred CCHHHHHHHHHHHH-hcCCC--------CHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---------CC----
Q psy12713 185 GQYEEALRNLDKTI-ALNPN--------FHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT---------HS---- 242 (551)
Q Consensus 185 ~~~~~A~~~~~~~l-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~---- 242 (551)
|++.+|.+.+...- ...|. ....|.++|.+++++ |.+.-+..+|.++++. .|
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~------~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL------GCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh------hhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 99999998876542 22232 123356777666665 9999999999999851 11
Q ss_pred -----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy12713 243 -----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 290 (551)
Q Consensus 243 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (551)
..-++.++.|..+...|++-.|.++|.++......+|..|..++.+++
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 124688999999999999999999999999999999999999998864
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=1.4e-06 Score=61.60 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc---CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVED---TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
.+.++..+|.+|..+|++++|+.+|++++++ .+++....+.++.++|.++...| ++++|+.++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 5667777777777777777777777777764 22222223556777777777777 777777777777654
No 208
>KOG1914|consensus
Probab=98.43 E-value=0.0017 Score=60.99 Aligned_cols=59 Identities=8% Similarity=0.019 Sum_probs=53.0
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc--CCchH
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL--NPNFH 517 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 517 (551)
|+-.++..-|...|+-.++..++++..-......+..+++-..|...|++++.. .|+-.
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 566799999999999999999999998888889999999999999999999987 55543
No 209
>KOG4555|consensus
Probab=98.42 E-value=3.1e-05 Score=57.62 Aligned_cols=99 Identities=29% Similarity=0.366 Sum_probs=81.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHH
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTI 323 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 323 (551)
+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+.. ++-+|+.++|++.+++++++..+. -.++...|.+
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa-~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQA-LRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHH-HHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 44567777888999999999999999999999999999988 444899999999999999876443 4567888999
Q ss_pred HHHhCCHHHHHHHHHHhcccccCH
Q psy12713 324 EVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 324 ~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
|...|+.+.|...|+.+-++....
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999888876544
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.40 E-value=1.5e-06 Score=80.23 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=62.4
Q ss_pred hCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713 240 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISID 310 (551)
Q Consensus 240 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 310 (551)
.+|+++..++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|.. +|++++|+.+++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 468888999999999999999999999999999999998854 9999999776 999999999999999873
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.36 E-value=9.4e-06 Score=64.68 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcC---CChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Q psy12713 188 EEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVP---GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE 259 (551)
Q Consensus 188 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 259 (551)
+.|.+.++.....+|.+.+.+.+-|.++..+ ... .....+++|+.-|++++.++|+..++++.+|.++...+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333 110 11245677777788888888888888888888776654
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.33 E-value=7.9e-07 Score=50.97 Aligned_cols=34 Identities=38% Similarity=0.804 Sum_probs=31.2
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.33 E-value=3.7e-07 Score=51.71 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=26.2
Q ss_pred hhHHhhccCCCchHHHhhhhhHHHHhcCHHHHH
Q psy12713 471 DLDEAEKVDPNVADSYYQRGQIYCLFGQYEEAL 503 (551)
Q Consensus 471 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 503 (551)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888888775
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.33 E-value=3.3e-06 Score=77.95 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=65.3
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713 200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEA---CTLFAQVLVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~~~ 275 (551)
.+|++...+.++|.+++.. |++++|+..|++++.++|++..+ |+++|.+|..+|++++|+.+++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l------GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK------GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4789999999999888888 99999999999999999999854 9999999999999999999999999973
No 215
>KOG1585|consensus
Probab=98.31 E-value=0.00095 Score=55.99 Aligned_cols=200 Identities=13% Similarity=0.097 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKI--KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVD-----PN 169 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~-----~~ 169 (551)
.+..+..-+.+|....+|++|...+.++.+-..++..+ ...++-..+....... .+.++..+++++..+. |+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~-klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS-KLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhCCcc
Confidence 34455556667777788888888888887654433222 2335555666667777 8888888888887653 33
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh---
Q psy12713 170 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVA------RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT--- 240 (551)
Q Consensus 170 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 240 (551)
....-...+--....-++++|+..|++++.+-..+... +...+ .++.....+++|-..+.+-...
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s------r~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS------RVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh------hHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 33333344444556678899999999988764433222 22233 4455558888888777665432
Q ss_pred ---CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 241 ---HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 241 ---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
.++....+.....++.-..+|..|..+++...++ .|++..+..++-.. +. .|+.++...++..
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd-~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YD-EGDIEEIKKVLSS 252 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hc-cCCHHHHHHHHcC
Confidence 2344455666666777788999999999987665 35566677777766 66 7999888877753
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.31 E-value=7.3e-07 Score=63.13 Aligned_cols=64 Identities=31% Similarity=0.433 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 279 ASLYVHRAMLMLQARGNVDEAIKLIEKAISID-------KSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
..++.++|.++.. .|++++|+.+|++++++. |....++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666444 666666666666665431 112445666777777777777777777766654
No 217
>KOG1586|consensus
Probab=98.29 E-value=0.00029 Score=58.56 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQ 291 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 291 (551)
+++++|+.++++++++..+.. ..+..+|.+|... .++++|+.+|+++-+..... ...+...+...-.
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 355555555555555443322 2344667777654 78888888888877654322 1123333433233
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCM-------FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
.++|.+|+..|+++....-+++ ..++.-|.|++-..+.-.+...+++..+++|...+.
T Consensus 167 -leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 167 -LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred -HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 7888888888888876654443 234456777777788888888888888888876553
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.27 E-value=0.00028 Score=65.69 Aligned_cols=57 Identities=25% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
.......+..+...-++.-.++++.+|+ .+.++..++.-. .....+|..+++++++.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pd---CAdAYILLAEEe--A~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPD---CADAYILLAEEE--ASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhh---hhHHHhhccccc--ccCHHHHHHHHHHHHHH
Confidence 3445567888999999999999999998 999999888632 23467888888888774
No 219
>KOG2610|consensus
Probab=98.26 E-value=0.00012 Score=64.02 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=106.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-CCCc---HHHHHHHHH
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-HSNV---VEACTLFAQ 253 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~ 253 (551)
+.+....|+..+|-..+++.++-.|.+..++...-.+++.. |+...-...+++++.. +++. ..+.-.++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~------G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYN------GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhc------cchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 44455667777777777787777777776666555555555 7777777777777765 4444 344456667
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHhCC
Q psy12713 254 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGTIEVQRGR 329 (551)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 329 (551)
.+...|-+++|.+.-+++++++|.+..+...++.+ ++..|+..++.++..+.-..-... ..-|...+.++..-+.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV-lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHV-LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH-HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc
Confidence 77778888888888888888888887777777777 444778888887776543221111 2235566777777788
Q ss_pred HHHHHHHHHHhc
Q psy12713 330 LEEAVKCFNKAL 341 (551)
Q Consensus 330 ~~~A~~~~~~a~ 341 (551)
++.|++.|++-+
T Consensus 263 ye~aleIyD~ei 274 (491)
T KOG2610|consen 263 YEKALEIYDREI 274 (491)
T ss_pred hhHHHHHHHHHH
Confidence 888888887643
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.24 E-value=3.2e-05 Score=61.74 Aligned_cols=93 Identities=24% Similarity=0.271 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcC
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ----------YEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVP 221 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 221 (551)
++.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+...+++.+|.++... .+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4555555666566666666666555555544422 34566666666666777666666666665544 111
Q ss_pred CC----hhHHHHHHHHHHHHHHhCCCcH
Q psy12713 222 GD----RERVEQSLKEFRNFVDTHSNVV 245 (551)
Q Consensus 222 ~~----~~~~~~A~~~~~~~~~~~~~~~ 245 (551)
.+ ...+++|..+|+++...+|++.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 11 1335555555666665555554
No 221
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.22 E-value=2e-06 Score=49.33 Aligned_cols=34 Identities=41% Similarity=0.811 Sum_probs=31.2
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
+.+++.+|.++..+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 222
>KOG4642|consensus
Probab=98.21 E-value=2.1e-05 Score=65.31 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
....+-.+|..++....|..|+..|.++|..+|. .+..+.+.+.|+++..+++.+.....+++++.|+. +.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~----vk~h 81 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL----VKAH 81 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH----HHHH
Confidence 4556677888888888999999999999999997 77888889999999999999999999999998876 5677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
+.+|....... .+++|+..+.++..+
T Consensus 82 ~flg~~~l~s~-~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 82 YFLGQWLLQSK-GYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHhhc-cccHHHHHHHHHHHH
Confidence 77999999988 899999999988654
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.19 E-value=8e-05 Score=67.30 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 303 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 303 (551)
+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+.. .|+.+.|..+|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf 93 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence 566777777777765444556666666766555 4455557777777777777777776666665444 67777777777
Q ss_pred HHHHhcCcCCH---HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 304 EKAISIDKSCM---FAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 304 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++++..-|... .+|......-...|+.+...+..+++.+..|++..+
T Consensus 94 er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 94 ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 77776554432 466667777777777777777777777776665443
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.16 E-value=0.0048 Score=60.23 Aligned_cols=181 Identities=17% Similarity=0.099 Sum_probs=123.3
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH-------HHHHHH-HHH---hcCCHHHHHH
Q psy12713 233 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY-------VHRAML-MLQ---ARGNVDEAIK 301 (551)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~-~~~---~~~~~~~A~~ 301 (551)
.|.-++..-|.. ...+..+.--.|+-+.++..+.++.+. ++-.... +..+.. .+. ...+.+.|.+
T Consensus 179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 344445554433 233334444568999999999998773 2221111 111111 111 1456788999
Q ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHhccccCCCcchh
Q psy12713 302 LIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERYNIKKKVSPRSQ 381 (551)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (551)
.+....+..|+.....+..|.++...|+.++|++.|++++.....-+.+...
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l---------------------------- 306 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL---------------------------- 306 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH----------------------------
Confidence 9999999999999999999999999999999999999998543332221110
Q ss_pred hhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhccchhhhchhhh
Q psy12713 382 NITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYGNLENESGQKHA 461 (551)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
..+..+..+..
T Consensus 307 ---------------------------------------------------------------------~~~El~w~~~~ 317 (468)
T PF10300_consen 307 ---------------------------------------------------------------------CYFELAWCHMF 317 (468)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 01122223445
Q ss_pred hcChhHHHHhhHHhhccCCC-chHHHhhhhhHHHHhcCH-------HHHHHHHHHHhhcCC
Q psy12713 462 ASDFTKAFADLDEAEKVDPN-VADSYYQRGQIYCLFGQY-------EEALRNLDKTIALNP 514 (551)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~p 514 (551)
..+|++|...+.+..+.+.- .+-..|..|.|+...|+. ++|.+.|.++-.+..
T Consensus 318 ~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 58999999999999987654 455667889999999999 889999888876543
No 225
>KOG4642|consensus
Probab=98.16 E-value=5e-06 Score=68.83 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=50.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|..++...+|..|+..|.+++.++|..+..+.+.+.++++ .++++.+.....+++++.|+.....+.+|.+......++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3334444455555555555555555555555555555555 555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcc
Q psy12713 332 EAVKCFNKALP 342 (551)
Q Consensus 332 ~A~~~~~~a~~ 342 (551)
+|+..++++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 55555555533
No 226
>KOG4507|consensus
Probab=98.15 E-value=0.00017 Score=67.90 Aligned_cols=122 Identities=22% Similarity=0.245 Sum_probs=98.3
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 82 RHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL 160 (551)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~ 160 (551)
.+....++..|. ...+..++..|+ .+|+..+|..++..++-..|.... --+++.+|.++.+.| ...+|--++
T Consensus 200 ~~~~~glq~~~~----sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k--di~lLSlaTiL~RaG-~sadA~iIL 272 (886)
T KOG4507|consen 200 HLIHEGLQKNTS----SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK--DIALLSLATVLHRAG-FSADAAVIL 272 (886)
T ss_pred HHHHHhhhcCch----hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc--cchhhhHHHHHHHcc-cccchhhee
Confidence 345566777774 445556666665 579999999999999988766433 235677999999999 999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713 161 DEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 210 (551)
..++...|....-++.++.++...+++......|..+.+..|......-.
T Consensus 273 hAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q 322 (886)
T KOG4507|consen 273 HAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQ 322 (886)
T ss_pred ehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHH
Confidence 88888888777779999999999999999999999999999886655443
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=0.00017 Score=65.19 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
+|..+.....+.+..+.|...|.++.+..+.....|...|.+-+.. .++.+.|...|+.+++..|.+...|..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-----~~d~~~A~~Ife~glk~f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-----NKDPKRARKIFERGLKKFPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-----CS-HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4566666666667777777777777755555566666666554442 15555577888888877788877787777
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 253 QVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
..+...|+.+.|...|++++..-|... .+|......-. ..|+.+....+.+++.+..|.+
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhh
Confidence 888888888888888888877655544 34444444423 3788888888888887777764
No 228
>KOG0530|consensus
Probab=98.13 E-value=0.004 Score=52.96 Aligned_cols=176 Identities=17% Similarity=0.160 Sum_probs=110.6
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCC
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT-SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASD 152 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 152 (551)
...-..|+.+-..++..+|. +..+|..+-.++..+ .+..+-++++..++..+|.+-. .|...-.+....| +
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA---nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ----vWHHRr~ive~l~-d 127 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA---NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ----VWHHRRVIVELLG-D 127 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc---cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh----HHHHHHHHHHHhc-C
Confidence 34456777777777777776 666666666665544 3556667777777777777743 3333555555666 6
Q ss_pred HH-HHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHH
Q psy12713 153 FT-KAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSL 231 (551)
Q Consensus 153 ~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 231 (551)
+. .-++..+.++..+..+-.+|..+--+...-+.++.-+.+..+.++.+-.+..+|..+-.+.....-....-..+.-+
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 66 66777777777777777777777777777777777777777777776666666554332211111122223445556
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713 232 KEFRNFVDTHSNVVEACTLFAQVLVD 257 (551)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~la~~~~~ 257 (551)
.+..+.+...|++..+|..+..++..
T Consensus 208 ~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 208 NYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 66666777777777777766666654
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=9.9e-06 Score=49.44 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 286 (551)
++..+|..|...|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555555444
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.05 E-value=0.0033 Score=57.92 Aligned_cols=187 Identities=17% Similarity=0.080 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---hCCHHHHHHHHHH-HHhcCCCCHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKV----DPNVADSYYQRGQIYCL---FGQYEEALRNLDK-TIALNPNFHVARA 209 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~l~~~~~~~~~~~ 209 (551)
....+-.+|.... +|+.-+...+..-.. -++.+.+.+..|.++.+ .|+.++|+..+.. .....+.+++.+.
T Consensus 143 iv~~lllSyRdiq-dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQ-DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhh-hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3444666777888 888888888776655 34556777778888888 8888888888888 4445566777777
Q ss_pred HHHHHHHHh---hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 210 QRHFVVHKM---IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 286 (551)
Q Consensus 210 ~~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 286 (551)
..|.++-.. .........++|+..|.++...+|+.. .-.+++.++...|...+...-+++.. ..+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~----------~~l~ 290 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIG----------VKLS 290 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHH----------HHHH
Confidence 777776655 123445556777777777777664432 22344444444443222221111111 0011
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 287 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 287 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.. +.+.|. ...-.+....-.++.+..-.|++++|...+++++.+.|..-.
T Consensus 291 ~l-lg~kg~------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 291 SL-LGRKGS------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HH-HHhhcc------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 11 000111 011122334445666666677777777777777777655443
No 231
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=0.00058 Score=55.35 Aligned_cols=140 Identities=20% Similarity=0.167 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
...|.........+.. +.....++....+|.+.+-..+...++..+...|++++|+..++.++.. |.+..+...+-.+
T Consensus 54 S~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHH
Confidence 3445555555544444 5555666666666665566677788899999999999999999998864 4445555666778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
++.+...+| .+++|+..+....... -.+......|.++...|+-++|+..|++++...++..
T Consensus 132 LArvq~q~~-k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 132 LARVQLQQK-KADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhh-hHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999 9999998877543211 1133456789999999999999999999998875443
No 232
>KOG2300|consensus
Probab=98.04 E-value=0.011 Score=54.93 Aligned_cols=277 Identities=15% Similarity=0.039 Sum_probs=170.1
Q ss_pred chHHHHHHHHHHH-hhhcHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhcCCCCch
Q psy12713 60 HELDLLSKAKRAF-EHEDYLTAIRHCTEEIESTSSN----HTKALARLLRATVYIFTS-QSTKAIEDLTQLVEDTSVDPK 133 (551)
Q Consensus 60 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~~----~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~ 133 (551)
.+...+..|..++ ...+++.|...++++..+...- ....++...++.+|.... .+..|...+.+++++....|.
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 4556677777664 4678999999999987654322 234677888999998877 889999999999999888887
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------------CCCCh-------------------
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----------------------DPNVA------------------- 171 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~------------------- 171 (551)
+.....+.++....-.. ++..|++.+.-.... .++..
T Consensus 125 wsckllfQLaql~~idk-D~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd 203 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDK-DFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD 203 (629)
T ss_pred hhHHHHHHHHHHHhhhc-cchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence 77778888999988888 888888765321110 11110
Q ss_pred --------hHHHHHHHH-HHHhCCHHHHHHHHHHH---Hhc-CCC-----------------------CHHHHHHHHHHH
Q psy12713 172 --------DSYYQRGQI-YCLFGQYEEALRNLDKT---IAL-NPN-----------------------FHVARAQRHFVV 215 (551)
Q Consensus 172 --------~~~~~la~~-~~~~~~~~~A~~~~~~~---l~~-~~~-----------------------~~~~~~~~~~~~ 215 (551)
..+..+-.+ |...|+...+...+++. +.. .+. ...+...+..+.
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 112222222 23345554444444432 211 110 011122222221
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHH------hCCCcHH--------HHHHHHHHHHhccCHHHHHHHHHHHHhc---CCC-
Q psy12713 216 HKMIVPGDRERVEQSLKEFRNFVD------THSNVVE--------ACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPE- 277 (551)
Q Consensus 216 ~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~- 277 (551)
.-...|-+++|.++-++++. ..+.... .+-.+..+-.-.|++.+|++....+.+. .|.
T Consensus 284 ----hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~ 359 (629)
T KOG2300|consen 284 ----HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP 359 (629)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch
Confidence 11122555555555555542 3443332 3345666777789999998877766554 344
Q ss_pred ------CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 278 ------NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 278 ------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+.+...+|.-... .+.++.|...|..+.+..... ...-.++|..|.+.|+-+.-.+.++..-.
T Consensus 360 ~Llr~~~~~ih~LlGlys~s-v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p 432 (629)
T KOG2300|consen 360 LLLRAHEAQIHMLLGLYSHS-VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP 432 (629)
T ss_pred HHHHHhHHHHHHHHhhHhhh-cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC
Confidence 23456667765444 889999999999888764332 33455788999998887776666665433
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.02 E-value=0.0006 Score=66.41 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=119.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----hcCC--ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy12713 183 LFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPG--DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV 256 (551)
Q Consensus 183 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 256 (551)
-.|+-+.+++.+.++.+ .++-......+..+.+.. ..-. .....+.|.+.+.......|+..-..+..|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 36899999999999887 333222222222222222 1222 4577889999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHhCCH-
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRGRL- 330 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~- 330 (551)
..|+.++|++.|++++...... .-.++.++.++.. +++|++|..++.+..+.+.-+ ....+..|.++...|+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 9999999999999988543332 2357789999877 999999999999999875543 44556778899999999
Q ss_pred ------HHHHHHHHHhccc
Q psy12713 331 ------EEAVKCFNKALPL 343 (551)
Q Consensus 331 ------~~A~~~~~~a~~~ 343 (551)
++|.++|.++-..
T Consensus 358 ~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 7777777766543
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00064 Score=59.08 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
.+.-+..+......|++.+|...|..++...|+ +.++...++.|+...|+.+.|...+...-............+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345567788899999999999999999999999 89999999999999999999999887754433332111111112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN 203 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~ 203 (551)
..+.+.. ...+ ...+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+..
T Consensus 211 ---~ll~qaa-~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 211 ---ELLEQAA-ATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred ---HHHHHHh-cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2222222 2222 23455667789999999999999999999999999999888877654
No 235
>KOG3616|consensus
Probab=98.01 E-value=0.0031 Score=61.46 Aligned_cols=29 Identities=17% Similarity=0.040 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 314 MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
......+|.-+...|+...|...|-++-.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 45677888888888999999888876643
No 236
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.00 E-value=0.025 Score=57.69 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCC--h----hHHHHHHHHHHHhCCHH
Q psy12713 116 KAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL-HAASDFTKAFADLDEAEKVDPNV--A----DSYYQRGQIYCLFGQYE 188 (551)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~la~~~~~~~~~~ 188 (551)
.|+++++-+++..+-.|...+.+.+.+|.++. ... +++.|..++++++.+...+ . .+.+.++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45666666665444445555666667777766 444 7777777777776654322 1 23345566666666655
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--CCcHHH----HHHHHHHHHhccCHH
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--SNVVEA----CTLFAQVLVDQEDFD 262 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~----~~~la~~~~~~~~~~ 262 (551)
|...+++.++..............-+.+.......+++..|++.++...... +.++.+ ....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 7777777666544311111111111111111111167777777777766554 233322 223345555666666
Q ss_pred HHHHHHHHHH
Q psy12713 263 GAEEYFNRSI 272 (551)
Q Consensus 263 ~A~~~~~~~~ 272 (551)
++++..+++.
T Consensus 197 d~~~~l~~~~ 206 (608)
T PF10345_consen 197 DVLELLQRAI 206 (608)
T ss_pred hHHHHHHHHH
Confidence 6766666653
No 237
>KOG0545|consensus
Probab=98.00 E-value=0.00014 Score=60.77 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhh--------cCCCCchhH------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVE--------DTSVDPKIK------VNAHIKRAVVHLHAASDFTKAFADLDEA 163 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~------~~~~~~la~~~~~~~~~~~~A~~~~~~~ 163 (551)
..++...|+-+++.|+|.+|...|..++. -.|.++++. ...+.+.+.|+...| +|-++++.....
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-e~yevleh~sei 256 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-EYYEVLEHCSEI 256 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH-HHHHHHHHHHHH
Confidence 44556666666777777777666666643 245554432 225667888999999 999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH
Q psy12713 164 EKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 206 (551)
Q Consensus 164 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 206 (551)
+..+|.+..+++..|......=+..+|...|.++++++|.-..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999988888899999999999998886543
No 238
>KOG0376|consensus
Probab=98.00 E-value=1.6e-05 Score=73.33 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=82.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713 251 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL 330 (551)
Q Consensus 251 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (551)
-+...+..+.++.|+..|.++++++|+++..+-+.+..++. .+++..|+..+.++++.+|....+|+..|.+....+++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34455556677777777777777777777777777666565 77777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHh
Q psy12713 331 EEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY 370 (551)
Q Consensus 331 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (551)
.+|...|++...+.|+++.+...+.-+.......+.....
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 7777777777777777777766666665555554444443
No 239
>KOG2610|consensus
Probab=97.99 E-value=0.00048 Score=60.49 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC---hhHHHH
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-DPNV---ADSYYQ 176 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~ 176 (551)
...-+.+.+..|++.+|...+++.++..|.+ ..++..--..++..| +...-...+++++.. +|+. ..+.-.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtD----lla~kfsh~a~fy~G-~~~~~k~ai~kIip~wn~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTD----LLAVKFSHDAHFYNG-NQIGKKNAIEKIIPKWNADLPCYSYVHGM 180 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchh----hhhhhhhhhHHHhcc-chhhhhhHHHHhccccCCCCcHHHHHHHH
Confidence 3344555666777777777777777777766 334444555666677 777777777777766 5555 334445
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV----VEACTLFA 252 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la 252 (551)
++-.+...|-|++|.+..+++++++|.+..+...++.++-.. |+..++.+...+.-..-... ..-|...+
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~------~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN------GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc------chhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 666677777777888777788877777777776666555444 77777777776654332221 12344567
Q ss_pred HHHHhccCHHHHHHHHHHHH
Q psy12713 253 QVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~ 272 (551)
.+++..+.++.|+++|.+-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 77777788888888877654
No 240
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.98 E-value=7.8e-06 Score=46.28 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=22.1
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (551)
|+++++.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666777777777777777777777776664
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.96 E-value=0.001 Score=62.10 Aligned_cols=144 Identities=15% Similarity=0.074 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP 221 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 221 (551)
+..-..+.. +.+.-++...+|++++|+.+++|..++.- ......+|..+++++++.....-..
T Consensus 174 IMq~AWRER-np~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~-------------- 236 (539)
T PF04184_consen 174 IMQKAWRER-NPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGK-------------- 236 (539)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhch--------------
Confidence 444555666 78888888889999999888888877653 2334667777777777643221000
Q ss_pred CChhHHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCHH
Q psy12713 222 GDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVD 297 (551)
Q Consensus 222 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 297 (551)
....+....+-......+.+ ..+...+|.+..+.|+.++|++.++..++..|. +..+..++..+++. .+.|.
T Consensus 237 ---s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Ya 312 (539)
T PF04184_consen 237 ---SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYA 312 (539)
T ss_pred ---hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHH
Confidence 00000000000111111111 223345566666666666666666666655443 23455555555555 66666
Q ss_pred HHHHHHHHH
Q psy12713 298 EAIKLIEKA 306 (551)
Q Consensus 298 ~A~~~~~~~ 306 (551)
++...+.+.
T Consensus 313 d~q~lL~kY 321 (539)
T PF04184_consen 313 DVQALLAKY 321 (539)
T ss_pred HHHHHHHHh
Confidence 666666554
No 242
>KOG0551|consensus
Probab=97.94 E-value=0.0001 Score=64.51 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.+.-+-.-|+-|++..+|..|+..|.+.++....++++....|.+.+-+....| +|..|+....+++..+|.+..+++.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-NYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCcchhhhhhh
Confidence 455666678888888888888888888888877778877778888888888888 8888888888888888888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
-+.|+..+..+.+|..+++..+.++.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888887766543
No 243
>KOG3616|consensus
Probab=97.93 E-value=0.0089 Score=58.50 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=115.3
Q ss_pred HHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc
Q psy12713 71 AFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA 150 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 150 (551)
.+..|+|+.|..+++ .+...|+ ....|..++......|+.--|..+|...-... .++.+.
T Consensus 454 aid~~df~ra~afle-s~~~~~d---a~amw~~laelale~~nl~iaercfaai~dva-------------k~r~lh--- 513 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMGPD---AEAMWIRLAELALEAGNLFIAERCFAAIGDVA-------------KARFLH--- 513 (1636)
T ss_pred ccccCchHHHHHHHH-hhccCcc---HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH-------------HHHHHH---
Confidence 467899999987776 5788887 77889999999888888888777765432210 111111
Q ss_pred CCHHHHHHHHHH-HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHH
Q psy12713 151 SDFTKAFADLDE-AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQ 229 (551)
Q Consensus 151 ~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (551)
+-.+...+ .+++..+-.+.|...+.+.+...++.+|...|-+ .+....-. ..|..+.+|++
T Consensus 514 ----d~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifle-----qn~te~ai---------gmy~~lhkwde 575 (1636)
T KOG3616|consen 514 ----DILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLE-----QNATEEAI---------GMYQELHKWDE 575 (1636)
T ss_pred ----HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHh-----cccHHHHH---------HHHHHHHhHHH
Confidence 11111111 2334455566677777777777777777766533 11111111 12222366777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 230 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309 (551)
Q Consensus 230 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 309 (551)
|+...+. .-.|.........-+.++..|+-++|-+. ...+.+.+.. ..+|+. .|.+-.|......--.+
T Consensus 576 ~i~lae~--~~~p~~eklk~sy~q~l~dt~qd~ka~el-------k~sdgd~laa-iqlyik-a~~p~~a~~~a~n~~~l 644 (1636)
T KOG3616|consen 576 AIALAEA--KGHPALEKLKRSYLQALMDTGQDEKAAEL-------KESDGDGLAA-IQLYIK-AGKPAKAARAALNDEEL 644 (1636)
T ss_pred HHHHHHh--cCChHHHHHHHHHHHHHHhcCchhhhhhh-------ccccCccHHH-HHHHHH-cCCchHHHHhhcCHHHh
Confidence 7665432 12333333333444455556665555432 1111111111 122333 55554444322111000
Q ss_pred CcC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 310 DKS------------CMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 310 ~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
..+ ..+.|-.-|.++.+..++++|+++|++.
T Consensus 645 ~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkg 687 (1636)
T KOG3616|consen 645 LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKG 687 (1636)
T ss_pred hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcc
Confidence 000 1345566677777888888888887753
No 244
>KOG0376|consensus
Probab=97.92 E-value=2e-05 Score=72.64 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
..+-.+|...+..++|+.|+..|.++|+.+|+ .+..+-.++.++.+.+++..|+..+.++++.+|.. ..+|+.
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~----~K~Y~r 77 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTY----IKAYVR 77 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchh----hheeee
Confidence 34456788899999999999999999999998 88888899999999999999999999999999876 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 182 (551)
.|......+ .+.+|...|+......|+.+.+...+..|-.
T Consensus 78 rg~a~m~l~-~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 78 RGTAVMALG-EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred ccHHHHhHH-HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999 9999999999999999999988777766543
No 245
>KOG0551|consensus
Probab=97.91 E-value=0.00011 Score=64.36 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=95.5
Q ss_pred CCCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch
Q psy12713 55 DTNESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133 (551)
Q Consensus 55 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 133 (551)
..+...+..+-..|..++...+|..|+..|.+.|.....+ ..++..|.++|.+.+..|+|..|+....+++.++|.+
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-- 152 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-- 152 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--
Confidence 3445578888999999999999999999999999876443 4678889999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP 168 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~ 168 (551)
..+++.-+.|++.+. ++..|...++..+.++.
T Consensus 153 --~Ka~~R~Akc~~eLe-~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 153 --LKAYIRGAKCLLELE-RFAEAVNWCEEGLQIDD 184 (390)
T ss_pred --hhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhhH
Confidence 567788999999999 99999999998865543
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.91 E-value=0.0034 Score=57.81 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH-HHHhCCCcH
Q psy12713 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIAL----NPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRN-FVDTHSNVV 245 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~ 245 (551)
+++...+-..|....+|+.-++..+..-.+ -++.+......+.++.+. ...|+.++|+..+.. .....+.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr---n~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR---NKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc---ccCCCHHHHHHHHHHHHhccCCCCh
Confidence 567777888899999999999999887766 445666667777666551 235999999999999 555667788
Q ss_pred HHHHHHHHHHHh---------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC
Q psy12713 246 EACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 295 (551)
Q Consensus 246 ~~~~~la~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (551)
+.+..+|.+|-. ....++|+..|.++.+.+|+.... .+++.++.. .|.
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~-~g~ 274 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLML-AGH 274 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHH-cCC
Confidence 999999998853 234678999999999988654333 344444344 554
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.90 E-value=1.4e-05 Score=45.67 Aligned_cols=33 Identities=45% Similarity=0.897 Sum_probs=30.6
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
.+|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999964
No 248
>KOG0545|consensus
Probab=97.89 E-value=0.00017 Score=60.23 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 308 (551)
++..-|+-++..|+|.+|...|..++.. .|.. ...+.+...|++. .|+|-++++....++.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHh
Confidence 3444555555666666666555555432 2332 4467788889887 8999999999999999
Q ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 309 IDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 309 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
..|.+..+++..|.++...=+.++|...|.++++++|.-..
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999987554
No 249
>KOG0530|consensus
Probab=97.88 E-value=0.011 Score=50.48 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=172.8
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
..+|.++..+|+.++..+.. . ..|+..-..++.++|.+-.+ |...-.++..++.+.
T Consensus 39 te~fr~~m~YfRAI~~~~E~---S-----------------~RAl~LT~d~i~lNpAnYTV----W~yRr~iL~~l~~dL 94 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK---S-----------------PRALQLTEDAIRLNPANYTV----WQYRRVILRHLMSDL 94 (318)
T ss_pred chhHHHHHHHHHHHHhcccc---C-----------------HHHHHHHHHHHHhCcccchH----HHHHHHHHHHhHHHH
Confidence 35688888888877776664 3 45666677788889988543 333555555554378
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713 154 TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYE-EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232 (551)
Q Consensus 154 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 232 (551)
.+-++++...+..+|.+-.+|..+-.+....|++. .-++..+.++..+.++-.+|..+-++.... +.++.-+.
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F------~~~~~EL~ 168 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFF------KDYEDELA 168 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHH------hhHHHHHH
Confidence 88899999999999999999999999999999988 888999999999999999998888777766 88999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh-cc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy12713 233 EFRNFVDTHSNVVEACTLFAQVLVD-QE-----DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--NVDEAIKLIE 304 (551)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~la~~~~~-~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~ 304 (551)
+..++++.+-.+-.+|+..--+... .| ..+.-+.+..+.+...|++..+|..+..++-...| .+..-.....
T Consensus 169 y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~ 248 (318)
T KOG0530|consen 169 YADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVE 248 (318)
T ss_pred HHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHH
Confidence 9999999887666666543222111 11 23445667788899999999999988877332233 2344455555
Q ss_pred HHH-hcCcCCHHHHHHHHHHHHH------hCCHH---HHHHHHHHhc-ccccCHHHHHH
Q psy12713 305 KAI-SIDKSCMFAYETLGTIEVQ------RGRLE---EAVKCFNKAL-PLARDEAELSH 352 (551)
Q Consensus 305 ~~~-~~~~~~~~~~~~l~~~~~~------~g~~~---~A~~~~~~a~-~~~~~~~~~~~ 352 (551)
... +....+|..+-.+..+|.. .+.-+ +|.+.++..- +.+|-....|.
T Consensus 249 ~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~ 307 (318)
T KOG0530|consen 249 NLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWR 307 (318)
T ss_pred HHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 554 3444556666666666622 22223 4555555543 55555444433
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=4e-05 Score=43.73 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777653
No 251
>KOG1550|consensus
Probab=97.79 E-value=0.017 Score=57.85 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcCC
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLF-----GQYEEALRNLDKTIAL-----NPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+++.+... .-.++.+...+|.++.....-.
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677888777654 4567777788877654 5788999999988761 1114456667777776641111
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCCH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNV 296 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 296 (551)
.-+...|+.++.++-.. +++.+.+.+|.++.... +...|.++|..+... .+..+.+.++.++..- .-+.
T Consensus 306 -~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 306 -KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred -cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 11788888888887765 34556777787777655 567888888887754 4567788888885432 1267
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHhc
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQR-GRLEEAVKCFNKAL 341 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~ 341 (551)
..|..++.++.+.. ++.+.+.++.++..- +.++.+...+...-
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 88888888888776 455556666555433 56655555554443
No 252
>KOG1550|consensus
Probab=97.78 E-value=0.054 Score=54.42 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=130.1
Q ss_pred chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHH
Q psy12713 114 STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA-----ASDFTKAFADLDEAEKV-----DPNVADSYYQRGQIYCL 183 (551)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~ 183 (551)
...|..+++.+.+... ..+...+|.++..- . +.+.|+.+++.+... ...++.+.+.+|.+|..
T Consensus 228 ~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~-d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQ-DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc
Confidence 4568888888776543 33556678777665 4 899999999999771 12256688899999988
Q ss_pred hC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q psy12713 184 FG-----QYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ 258 (551)
Q Consensus 184 ~~-----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 258 (551)
.. ++..|..++.++.... ++.+.+.+|.++.... ...+...|..+|..+... .+..+.+.++.+|..-
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~---~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT---KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC---ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 43 7788999999998765 4566677887766542 235678999999988764 5677888888888653
Q ss_pred ----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 259 ----EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 309 (551)
Q Consensus 259 ----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 309 (551)
.+...|..++.++.+.. .+.+.+.++..+....+.++.+...+....+.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 47899999999999887 55666666666554346666666655544443
No 253
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.78 E-value=0.061 Score=54.96 Aligned_cols=276 Identities=17% Similarity=0.155 Sum_probs=172.1
Q ss_pred CCCcchHHHHHHHHHHH-hhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCC
Q psy12713 56 TNESHELDLLSKAKRAF-EHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVD 131 (551)
Q Consensus 56 ~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 131 (551)
++...+...++.|..++ ...+++.|..++++++...... .....+.+.++.++.+.+... |...+++.++.....
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 33447888999999998 6789999999999998776432 234556677889988888777 999999998865442
Q ss_pred chh-HHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC--CCChh----HHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Q psy12713 132 PKI-KVNAHIKR-AVVHLHAASDFTKAFADLDEAEKVD--PNVAD----SYYQRGQIYCLFGQYEEALRNLDKTIAL--- 200 (551)
Q Consensus 132 ~~~-~~~~~~~l-a~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~----~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 200 (551)
+.. +..++..+ .......+ ++..|++.++...... +.++. +....+.+....+..+++++..+++...
T Consensus 133 ~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 211 12222222 33333447 9999999999988765 34433 2334466677778888888888877432
Q ss_pred ---CCCC----HHHHHHHHHHHHHhhcCCChhHHHHHHHH---HHHHHHh---CC---C---c-----------------
Q psy12713 201 ---NPNF----HVARAQRHFVVHKMIVPGDRERVEQSLKE---FRNFVDT---HS---N---V----------------- 244 (551)
Q Consensus 201 ---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~---~~~~~~~---~~---~---~----------------- 244 (551)
+|+. ..++..+-.+ ......|++..+... ++..+.. .+ . +
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l----~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~ 287 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDL----CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGT 287 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCc
Confidence 2221 2222222222 112222444343333 3333321 11 0 0
Q ss_pred H-------------HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCC-------------------HHHHHHH
Q psy12713 245 V-------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------PEN-------------------ASLYVHR 285 (551)
Q Consensus 245 ~-------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l 285 (551)
+ -++..-|......|..++|.+++.++++.- +.. .......
T Consensus 288 ~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~ 367 (608)
T PF10345_consen 288 PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQ 367 (608)
T ss_pred eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHH
Confidence 0 123344556666777778888888776531 111 0122344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---cC------CHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 286 AMLMLQARGNVDEAIKLIEKAISID---KS------CMFAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 286 ~~~~~~~~~~~~~A~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
+.+.+. .+++..|...++.+.+.. |. .+..++..|..+...|+.+.|...|.
T Consensus 368 ~~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 368 IWCNFI-RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHH-CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 555555 899999999888776542 22 37788999999999999999999998
No 254
>KOG1258|consensus
Probab=97.75 E-value=0.046 Score=52.75 Aligned_cols=264 Identities=9% Similarity=-0.013 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH-HhcCCHHHH
Q psy12713 78 LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL-HAASDFTKA 156 (551)
Q Consensus 78 ~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~~A 156 (551)
+.+...|...|...|- ....|...|..-.+.|..+.+.+.|++++.--|-+...+.. ...... ..| +...-
T Consensus 62 ~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~----Y~~f~~n~~~-d~~~l 133 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLS----YLAFLKNNNG-DPETL 133 (577)
T ss_pred HHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHhccCC-CHHHH
Confidence 5566667777777776 66777777888888888888888888888877755443322 222222 333 66666
Q ss_pred HHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH------------------------
Q psy12713 157 FADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA------------------------ 209 (551)
Q Consensus 157 ~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~------------------------ 209 (551)
...|++|......+ ...|-..-..-..++++..-...|++.++.--.....++
T Consensus 134 r~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 134 RDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 66677766654332 223333333334444555555555554443111000000
Q ss_pred ---------------------------------------HHHHHH-HHhhcCCChhHHHHHHHHHHHHHHh-----CCC-
Q psy12713 210 ---------------------------------------QRHFVV-HKMIVPGDRERVEQSLKEFRNFVDT-----HSN- 243 (551)
Q Consensus 210 ---------------------------------------~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~- 243 (551)
.+.... .+..++.......+.+..++..++. .|.
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 000000 0001111111112222222222211 111
Q ss_pred --cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Q psy12713 244 --VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETL 320 (551)
Q Consensus 244 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 320 (551)
....|......-...|+++.....|++++--.......|...+..... .|+.+-|...+.++.+.. |..+.....-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~-~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES-SGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH-cCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 234566666677777888888888888877777777788777776444 688877777777777654 5556677777
Q ss_pred HHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 321 GTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
+.+....|++..|...+++..+..|+...+
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 777777888888888888887776765543
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.75 E-value=0.031 Score=50.69 Aligned_cols=131 Identities=14% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHhhhcHHHHHHHHHHHhhcC----CCc-hhHHHHHHHHHHHHHHhC-CchHHHHHHHHHhhc----C------CCCchh
Q psy12713 71 AFEHEDYLTAIRHCTEEIEST----SSN-HTKALARLLRATVYIFTS-QSTKAIEDLTQLVED----T------SVDPKI 134 (551)
Q Consensus 71 ~~~~g~~~~A~~~~~~~l~~~----~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~----~------~~~~~~ 134 (551)
...+||++.|..++.++-... |+. ..-...++..|......+ +++.|...++++.+. . |+....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999876544 322 445678889999999999 999999999999886 2 122245
Q ss_pred HHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 135 KVNAHIKRAVVHLHAASDF---TKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
+...+..++.++...+ .+ ++|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++..-+
T Consensus 83 r~~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWD-TYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 5667888999998887 54 4566666666667788888886666677668889999999988887543
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.72 E-value=0.021 Score=57.55 Aligned_cols=244 Identities=17% Similarity=0.084 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC-----CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV-----DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV- 170 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~- 170 (551)
++......+.......++.+|.....++...-+. .........-..|.+....| ++++|....+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccccc
Confidence 4455566788888889999999998887765433 22223333444778888899 9999999999999887765
Q ss_pred ----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH--HHHHHHHHHHHHH----h
Q psy12713 171 ----ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER--VEQSLKEFRNFVD----T 240 (551)
Q Consensus 171 ----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~----~ 240 (551)
..+...+|.+..-.|++++|..+...+.+........++..-..+....+...+|+ +.+....+...-. .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45677889999999999999999998887744332222221111112244444563 3333333333222 2
Q ss_pred CCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC
Q psy12713 241 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 241 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
.|.........+.++...-+++.+.......++. .|.... ..+.++.+.+. .|++++|...+........+.
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~-~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL-RGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC
Confidence 2333223333333333333355555555555443 233222 22478888777 999999999998887653322
Q ss_pred -------HHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 314 -------MFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 314 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
..+..........+|+.+.|.....+...
T Consensus 652 ~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 652 QYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred CCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 11222233445567899999888887443
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=8.2e-05 Score=42.43 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSV 130 (551)
Q Consensus 100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 130 (551)
+++.+|.+++.+|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555554443
No 258
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.69 E-value=0.052 Score=51.53 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 242 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP----ENASLYVHRAMLMLQARGNVDEAIKLIEKAIS 308 (551)
Q Consensus 242 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 308 (551)
......+...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+... .|+..+|+..++..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 34456777888888888888888888887776542 135566666777666 7888888887777776
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.025 Score=53.71 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C-----------------------
Q psy12713 225 ERVEQSLKEFRNFVDTHS----NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-P----------------------- 276 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~----------------------- 276 (551)
|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+... .
T Consensus 160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVIS 239 (352)
T ss_pred CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccc
Confidence 666666666666555431 134555556666666666666666665555510 0
Q ss_pred ----------CCHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH----------
Q psy12713 277 ----------ENASLYVHRAMLMLQAR------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL---------- 330 (551)
Q Consensus 277 ----------~~~~~~~~l~~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------- 330 (551)
....++..+|..... . +..+++...|.++++.+|....+|..+|..+...-+.
T Consensus 240 ~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~ 318 (352)
T PF02259_consen 240 STNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQ 318 (352)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccch
Confidence 002234445544333 4 7788888888888888888888888888776554221
Q ss_pred -------HHHHHHHHHhcccccC
Q psy12713 331 -------EEAVKCFNKALPLARD 346 (551)
Q Consensus 331 -------~~A~~~~~~a~~~~~~ 346 (551)
..|+..|-+++...+.
T Consensus 319 ~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 319 EDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCC
Confidence 2366666666666655
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.0031 Score=51.30 Aligned_cols=105 Identities=23% Similarity=0.182 Sum_probs=86.7
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
.+-..+..|......|++++|+..++.++....+......+-..+|.+...+|.+++|+..++.... +.+.....
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-----~~w~~~~~ 162 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-----ESWAAIVA 162 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-----ccHHHHHH
Confidence 4566788999999999999999999999977666556677888999999999999999999876543 22223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~ 170 (551)
...|.++...| +-++|+..|++++...++.
T Consensus 163 elrGDill~kg-~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 163 ELRGDILLAKG-DKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhhhHHHHcC-chHHHHHHHHHHHHccCCh
Confidence 56899999999 9999999999999987544
No 261
>KOG1914|consensus
Probab=97.62 E-value=0.027 Score=53.38 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=111.6
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHhCC--------------chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713 83 HCTEEIESTSSNHTKALARLLRATVYIFTSQ--------------STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH 148 (551)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 148 (551)
.+++++..-+. .+++|+..+..+...++ .+++..++++++....... ...++.++..--.
T Consensus 267 ayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~---~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 267 AYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN---KLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHH
Confidence 45555555554 66666665555555444 4566666666665322110 1111222221111
Q ss_pred hc--CCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChh
Q psy12713 149 AA--SDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 149 ~~--~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (551)
.- +.++..-..+++++.....+ .-+|..+-..-.+..-...|...|.++-+.......++..-+.+-+ ...+
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy-----~csk 415 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY-----YCSK 415 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH-----HhcC
Confidence 11 02455555666666543322 2344455555555666666777777766544333333333332211 1236
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENA-SLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~-~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
+.+-|...|+-.++..++.+.........+...++-..|...|++++.. .++.. .+|-..-. |-..-|+....+++
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-yES~vGdL~si~~l 494 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-YESNVGDLNSILKL 494 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-HHHhcccHHHHHHH
Confidence 6777777777777777777776666677777777777777777777665 22222 23332222 22225666666655
Q ss_pred HHHHHhcCc
Q psy12713 303 IEKAISIDK 311 (551)
Q Consensus 303 ~~~~~~~~~ 311 (551)
-++-....|
T Consensus 495 ekR~~~af~ 503 (656)
T KOG1914|consen 495 EKRRFTAFP 503 (656)
T ss_pred HHHHHHhcc
Confidence 555444443
No 262
>KOG4507|consensus
Probab=97.54 E-value=0.0068 Score=57.68 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=84.7
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 335 (551)
..|+...|+.++..++...|.... ...+++.+.+. .|-...|-..+.+++.+....+..++.+|..+..+.+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 467888888888888888776543 56788888676 7888889999999999988888999999999999999999999
Q ss_pred HHHHhcccccCHHHHHHHHhHH
Q psy12713 336 CFNKALPLARDEAELSHIYSLR 357 (551)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~ 357 (551)
.|+.|++++|++++....+...
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999998876655444
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.53 E-value=0.075 Score=49.39 Aligned_cols=142 Identities=7% Similarity=-0.036 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKV-NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQ 176 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 176 (551)
.-.+...|-++.+++++.+|.+.|.++.+...+++.... ..+.++..-.+-++ +.+.-...+-..-+..|..+....-
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345667789999999999999999999887665544322 33433444444455 6777666666666778888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHH---HhhcCCChhHHHHHHHHHHHHHHh
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPNFHVARA------QRHFVVH---KMIVPGDRERVEQSLKEFRNFVDT 240 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~A~~~~~~~~~~ 240 (551)
.|...++.+++.+|++.+..-...-......+. ......+ ....+...|++.++...+++.+..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999999987765543211111111 0000000 003444559999999999988764
No 264
>KOG1308|consensus
Probab=97.51 E-value=3e-05 Score=68.10 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=76.1
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
.+..|.++.|++.|..+++++|..+..|-.+|.+++++++...|+..+..+++++|+....+-.+|.....+|++.+|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999998888888888888888888877
Q ss_pred hhcccchhhh
Q psy12713 539 DEFMIPKITY 548 (551)
Q Consensus 539 ~~~~~~~~~~ 548 (551)
+.-...+..|
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 6655555443
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.013 Score=51.35 Aligned_cols=129 Identities=17% Similarity=0.110 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMI 219 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 219 (551)
+..+.-....| ++.+|...+..++...|.+.++...++.++...|+.+.|...+...-...... ......+.+-+. .
T Consensus 138 ~~~~~~~~~~e-~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll-~ 214 (304)
T COG3118 138 LAEAKELIEAE-DFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELL-E 214 (304)
T ss_pred HHHhhhhhhcc-chhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHH-H
Confidence 44677788889 99999999999999999999999999999999999999988877643222211 111101100000 0
Q ss_pred cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q psy12713 220 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 275 (551)
Q Consensus 220 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 275 (551)
.....++ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+
T Consensus 215 qaa~~~~----~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 215 QAAATPE----IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHhcCCC----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 0011111 123444556677777777788888888888888777776666654
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.005 Score=49.68 Aligned_cols=62 Identities=26% Similarity=0.274 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.+...++..+...| ++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~-~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAG-DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35556778888888 999999999999999999999999999999999999999988887754
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.49 E-value=0.00014 Score=41.11 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=30.8
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 268
>KOG0985|consensus
Probab=97.49 E-value=0.16 Score=52.13 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQR 177 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 177 (551)
++....-..+++..+-..+-++.+++.+-.+.-..+. .+ +-++-..-.-.- +.....++.++.-..+.. .+
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~-~n-LQnLLiLtAika-d~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN-RN-LQNLLILTAIKA-DRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc-hh-hhhhHHHHHhhc-ChHHHHHHHHHhccCCch------hH
Confidence 3344444455556666667777777765332111110 11 111111111122 444555555554333221 23
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713 178 GQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257 (551)
Q Consensus 178 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 257 (551)
|.+....+-|++|...|++-- -+..+..-+. ..-+..+.|.+..+++ +.+.+|..+|....+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~VLi---------e~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQVLI---------ENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ 1116 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHH---------HHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh
Confidence 555566666777777766521 1222211111 1115566666555543 446677777777777
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKC 336 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 336 (551)
.|...+|++.|-++ +++..+.....+.-+ .|.|++-+.++..+-+.... +.+-..+..+|.+.++..+-.+.
T Consensus 1117 ~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHH
Confidence 77777777777553 445555555555344 77777777777666544322 33334455556666666554443
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.032 Score=44.45 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
....-|..+..+.+.+..++|+..|..+-+..-. .+...+.+..|.+....|+...|+..|..+-...|-....+-.+-
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4566788899999999999999999987766544 345678888999999999999999999998876654433334455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAE-KVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
..-+..+...| .|+.-....+..- ..+|-...+.-.||..-++.|++.+|...|.++.. +...+....+.+.+.
T Consensus 136 lraa~lLvD~g-sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 136 LRAAYLLVDNG-SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHHhccc-cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 66778888889 8988776665443 22444466777899999999999999999999876 444455555555443
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.0065 Score=49.05 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 281 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
+...++..+.. .|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++....
T Consensus 64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34455665566 899999999999999999999999999999999999999999999988654
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.42 E-value=9.2e-05 Score=42.70 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=25.1
Q ss_pred HHhhhhhHHHHhcCHHHHHHHHHHHhhcCC
Q psy12713 485 SYYQRGQIYCLFGQYEEALRNLDKTIALNP 514 (551)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 514 (551)
+|.++|.+|...|++++|+++|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 478899999999999999999999765543
No 272
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.41 E-value=0.00082 Score=42.22 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=38.5
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
+.+|.+|..+.++|+|++|..+.+.+++++|+|..+......+-.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999988777666544
No 273
>KOG3783|consensus
Probab=97.35 E-value=0.062 Score=51.16 Aligned_cols=245 Identities=15% Similarity=0.093 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy12713 79 TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFA 158 (551)
Q Consensus 79 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~ 158 (551)
...+.+.......|+ .+...+..+..+...|+.+.|+..++..+. +.-..+....++.+|.++..+. +|..|-.
T Consensus 251 ~~~~~Ll~~~~~~p~---ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~-~~~~aad 324 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPK---GALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQH-QYSRAAD 324 (546)
T ss_pred HHHHHhHHHHHhCCC---CccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 334444444555665 666666777777777777777777777766 4444455556677788888888 8888888
Q ss_pred HHHHHHhcCCCChhHHHHHH-HHHHH--------hCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 159 DLDEAEKVDPNVADSYYQRG-QIYCL--------FGQYEEALRNLDKTI---ALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
.+....+.+.-+.-.|..++ -|+.. .|+-+.|..+++... ...|++... +..-
T Consensus 325 ~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~---------------E~f~ 389 (546)
T KOG3783|consen 325 SFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL---------------EKFI 389 (546)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch---------------hHHH
Confidence 88777666544333343333 33322 223333333333222 222221111 1111
Q ss_pred HHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHh--ccCHHHHHHHHHHHH---hc-CCCCHH-HHHHHHHHHHHhcCCHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVE--ACTLFAQVLVD--QEDFDGAEEYFNRSI---RV-DPENAS-LYVHRAMLMLQARGNVD 297 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~--~~~~~~A~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~ 297 (551)
..++.+.-.+.- .++..+. .+..++.++.. ....++.. -++... .. ++++.- .+..+|.+ ++..|+..
T Consensus 390 ~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~-lR~Lg~~~ 466 (546)
T KOG3783|consen 390 VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVI-LRNLGDSE 466 (546)
T ss_pred HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHH-HHHcCCHH
Confidence 112221111110 1111111 12333333221 11222222 111111 12 333322 34456666 66699999
Q ss_pred HHHHHHHHHHhcC---cC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHhcccccCH
Q psy12713 298 EAIKLIEKAISID---KS----CMFAYETLGTIEVQRGR-LEEAVKCFNKALPLARDE 347 (551)
Q Consensus 298 ~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~ 347 (551)
.|..+|...++.. .. .|.+++.+|.++...|. ..++.+++.+|-+-..+.
T Consensus 467 ~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 467 VAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 9999999887431 11 27899999999999999 999999999998866443
No 274
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.32 E-value=0.012 Score=43.37 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhhcC---CCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh-------c
Q psy12713 64 LLSKAKRAFEHEDYLTAIRHCTEEIEST---SSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVE-------D 127 (551)
Q Consensus 64 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------~ 127 (551)
.+..|...+..|-|++|...++++.+.. |.. -.++.++..++.++..+|+|++++...++++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3456777888999999999999998754 222 45678888999999999999988777766664 4
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 128 TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 128 ~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
+.+....++.+-+..+..+-..| +.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~G-r~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLG-RKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 45555667777788888888888 88888888887654
No 275
>KOG1308|consensus
Probab=97.30 E-value=0.00038 Score=61.40 Aligned_cols=92 Identities=27% Similarity=0.284 Sum_probs=67.5
Q ss_pred HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
-.+..|.+++|++.|..++.++|....+... .+.+++.++ +...|+..+..++.++|+....|-..|.....+|+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k----r~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAK----RASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhccc----ccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 3445677777788887777777776544444 777777777 77778887777777777777777777777777788
Q ss_pred HHHHHHHHHHHHhcCCC
Q psy12713 187 YEEALRNLDKTIALNPN 203 (551)
Q Consensus 187 ~~~A~~~~~~~l~~~~~ 203 (551)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 88887777777776543
No 276
>KOG1258|consensus
Probab=97.28 E-value=0.2 Score=48.56 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALN-PNFHVARAQRHFV 214 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~ 214 (551)
...|......-...| +++...-.|++++--.....+.|...+......|+.+-|-..+.++.++. |..+.....-+..
T Consensus 297 l~nw~~yLdf~i~~g-~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLG-DFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcc-cHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 334555566666777 88888888888777666677788888887777788877777777777664 3444444333322
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHH---HHHHHHhcCCCC---HHHHHHHHHH
Q psy12713 215 VHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE---YFNRSIRVDPEN---ASLYVHRAML 288 (551)
Q Consensus 215 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~---~~~~~~~~~~~~---~~~~~~l~~~ 288 (551)
-- ..|++..|...+++.....|+...+-...+....+.|+.+.+.. .+.....-..+. ...+...+..
T Consensus 376 ~e------~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 EE------SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH------hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 22 23778888888888877777777777777777777777777763 222222211111 2234444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC
Q psy12713 289 MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG 328 (551)
Q Consensus 289 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 328 (551)
.+.-.++.+.|...+.++++..|.+...+..+..+....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4444677778888888888888777777666666655544
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.27 E-value=0.00047 Score=39.18 Aligned_cols=32 Identities=50% Similarity=0.600 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhcccccC
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLARD 346 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 346 (551)
.+|..+|.++..+|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46677777777777777777777777777764
No 278
>KOG3824|consensus
Probab=97.23 E-value=0.00054 Score=59.38 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=66.4
Q ss_pred hhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 454 NESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 454 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
..++.....|+.++|...|+.++.+.|.+++++...|......++.-+|-.+|-+|+.++|.|..++.+++..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444466779999999999999999999999999999999999999999999999999999999999888654
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.19 E-value=0.18 Score=46.32 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhC-----------
Q psy12713 263 GAEEYFNRSIRVDPENASLYVHRAMLMLQARG---NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRG----------- 328 (551)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 328 (551)
.|...|.++.... ++.+...+|.+|....| ++.+|..+|.++.+... ....+.++ ++...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 5666666655443 55666667766544222 66777777777776655 66666666 555555
Q ss_pred ----CHHHHHHHHHHhcccccC
Q psy12713 329 ----RLEEAVKCFNKALPLARD 346 (551)
Q Consensus 329 ----~~~~A~~~~~~a~~~~~~ 346 (551)
+...|..++..+....+.
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCCh
Confidence 666777777766655443
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.17 E-value=0.058 Score=50.55 Aligned_cols=171 Identities=12% Similarity=-0.015 Sum_probs=114.3
Q ss_pred HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC
Q psy12713 163 AEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS 242 (551)
Q Consensus 163 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 242 (551)
.+..+|-+.+++..++.++..+|+...|.+.+++++-.........+... ......|.- +.--..+
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~------~~~~~~g~~--------rL~~~~~ 97 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF------RSNLTSGNC--------RLDYRRP 97 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh------hcccccCcc--------ccCCccc
Confidence 45678999999999999999999999999999998743221111111000 000000000 0000012
Q ss_pred Cc---HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCc-----CC
Q psy12713 243 NV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK-----SC 313 (551)
Q Consensus 243 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~ 313 (551)
.| ..+.+.....+.+.|-+..|.++.+-.+.++|. ++-........+.-+.++++--++.++....... .-
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 22 235567778889999999999999999999999 6665444444444448888888887777654211 12
Q ss_pred HHHHHHHHHHHHHhCCH---------------HHHHHHHHHhcccccCH
Q psy12713 314 MFAYETLGTIEVQRGRL---------------EEAVKCFNKALPLARDE 347 (551)
Q Consensus 314 ~~~~~~l~~~~~~~g~~---------------~~A~~~~~~a~~~~~~~ 347 (551)
|..-+..+.+++..++. +.|...+.+|+...|.-
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 45677888888888888 89999999999988864
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.16 E-value=0.36 Score=49.16 Aligned_cols=242 Identities=15% Similarity=0.066 Sum_probs=156.1
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCc
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDP 132 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 132 (551)
.++..-+..|-.....+++.+|..++.++...-+.. ...+...-..|.+....|++++|++..+.++..-|.+.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 356667788888899999999999998876654431 33556677788999999999999999999999766543
Q ss_pred -hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHH--HHHHHHHHHH----h
Q psy12713 133 -KIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYE--EALRNLDKTI----A 199 (551)
Q Consensus 133 -~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~--~A~~~~~~~l----~ 199 (551)
.....++..+|.+..-.| ++++|..+...+.+..... ..+....+.++..+|+.. +....+...- .
T Consensus 493 ~~~r~~~~sv~~~a~~~~G-~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRG-ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhc-hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 334557788999999999 9999999999888763222 234455678888888433 3333333222 2
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH----hCCCc--HH-HHHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 200 LNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD----THSNV--VE-ACTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~--~~-~~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
..|-+.......+.++... -+.+.+.......++ ..|.. .. ....++.+....|+.++|...+....
T Consensus 572 q~~~~~f~~~~r~~ll~~~------~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAW------LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hcccchhHHHHHHHHHHHH------HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2333333333233222211 224444444444333 22332 22 23488999999999999999998876
Q ss_pred hcCCCC--HH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 273 RVDPEN--AS----LYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 273 ~~~~~~--~~----~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
..-.+. .. ........+...+|+..+|.....+..
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 653222 11 112222333444899999988887743
No 282
>KOG0985|consensus
Probab=97.09 E-value=0.46 Score=49.11 Aligned_cols=244 Identities=14% Similarity=0.061 Sum_probs=118.2
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+++.--.....++..+-..+-++++++++-.+..-..+......+..... .-+.....++.++.-..+..+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~-------- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPD-------- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchh--------
Confidence 34444445556677777778888888866433221112222222222222 223344555555544333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKV----------------------DPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
+|.+....+ -+++|...|++.-.. .-+.+.+|..+|....+.|...+|++.|-++
T Consensus 1054 --ia~iai~~~-LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 --IAEIAIENQ-LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred --HHHHHhhhh-HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 444555555 555555555442100 0123455555555555555555555555443
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713 198 IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (551)
+++..+........+. |.|++-+.++.-+-+.... +.+-..+...|.+.++..+-.+.+ ..|+
T Consensus 1131 -----dDps~y~eVi~~a~~~------~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN 1193 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRT------GKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPN 1193 (1666)
T ss_pred -----CCcHHHHHHHHHHHhc------CcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCC
Confidence 2333333333222222 5555555555444332211 112222333344444443332221 1333
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 278 NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.+. ....|.-++. .|.|+.|.-+|.. ..-|..++..+..+|+|..|+..-++|-.
T Consensus 1194 ~A~-i~~vGdrcf~-~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1194 VAN-IQQVGDRCFE-EKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred chh-HHHHhHHHhh-hhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 332 2344544465 6777777666653 34566778888888888888888777643
No 283
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.058 Score=49.95 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCCHHHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKL 302 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~ 302 (551)
.-.+.-+..+++|++.+|++...+..+-....+..+.++....+++++..+|+++..|...-...... .-.+......
T Consensus 45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 45 ALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 44567778889999999998888888888888888888888899999999999888887665542221 2246677777
Q ss_pred HHHHHhcCcC------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 303 IEKAISIDKS------------------CMFAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 303 ~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
|.++++.-.. -..++..+.......|-.+.|+..++-.++.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 7777643110 13456677788889999999999999999875
No 284
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.05 E-value=0.042 Score=51.49 Aligned_cols=106 Identities=10% Similarity=-0.059 Sum_probs=70.3
Q ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--------------CC------------CCchhHHHHHH
Q psy12713 87 EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--------------TS------------VDPKIKVNAHI 140 (551)
Q Consensus 87 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~~------------~~~~~~~~~~~ 140 (551)
.++.+|- +++++..++.++..+|+...|.+.+++++-. ++ .|. ....+++
T Consensus 32 ll~~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR-~fflal~ 107 (360)
T PF04910_consen 32 LLQKNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR-QFFLALF 107 (360)
T ss_pred HHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch-HHHHHHH
Confidence 4456665 9999999999999999999999999988532 11 111 1234556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ChhH-HHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPN-VADS-YYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~-~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
.....+.+.| -+..|.++.+-.+.++|. ++-. .+.+-....+.++++--+..++..
T Consensus 108 r~i~~L~~RG-~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 108 RYIQSLGRRG-CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 6666777777 777777777777777777 5433 333334444556665555555543
No 285
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.04 E-value=0.26 Score=45.33 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=123.7
Q ss_pred HHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--
Q psy12713 109 IFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAAS---DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL-- 183 (551)
Q Consensus 109 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-- 183 (551)
...+++..|...+..+-.... ..+...++.+|....+ +..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD------AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR 123 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC------hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence 345667777777777665221 1344556666665432 5777888888443 45567778888888876
Q ss_pred --hCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--
Q psy12713 184 --FGQYEEALRNLDKTIALNPNF-HVARAQRHFVVHKMI-VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-- 257 (551)
Q Consensus 184 --~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-- 257 (551)
..+..+|..+|.++.+..-.. ......++..+.... ...-..+...|...|.++.... ++.+...+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL 201 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence 448888888888888764433 233556665554321 0111224457888888877665 67788888887765
Q ss_pred --ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCcC
Q psy12713 258 --QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---------------NVDEAIKLIEKAISIDKS 312 (551)
Q Consensus 258 --~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~~A~~~~~~~~~~~~~ 312 (551)
..++.+|..+|.++.+... ....+.++ +++. .| +...|...+..+....+.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 3488899999999988766 77777788 4344 44 666777777766655443
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.01 E-value=0.25 Score=44.79 Aligned_cols=226 Identities=10% Similarity=0.037 Sum_probs=135.1
Q ss_pred HHHhCCchHHHHHHHHHhhcC----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CC------
Q psy12713 108 YIFTSQSTKAIEDLTQLVEDT----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV----DP---NV------ 170 (551)
Q Consensus 108 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~---~~------ 170 (551)
.+..|+++.|..++.++-... |+........+++.|......+.+++.|...++++.+. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999987654 44444445566777776666654799999999999877 21 11
Q ss_pred -hhHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCC-Cc-
Q psy12713 171 -ADSYYQRGQIYCLFGQYE---EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHS-NV- 244 (551)
Q Consensus 171 -~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~- 244 (551)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.+... .++.+.+.+.+.+++...+ ..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~------~~~~~~~~~~L~~mi~~~~~~e~ 156 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK------SFDEEEYEEILMRMIRSVDHSES 156 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc------cCChhHHHHHHHHHHHhcccccc
Confidence 346778889998888765 45555566666677766666433322222 5888999999999988654 22
Q ss_pred -HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHH---HHHHhc-CC------HHHHHHHHHHHHhc--
Q psy12713 245 -VEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAM---LMLQAR-GN------VDEAIKLIEKAISI-- 309 (551)
Q Consensus 245 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~---~~~~~~-~~------~~~A~~~~~~~~~~-- 309 (551)
.........-+.. .....|...+...+.. .|.... +..... +++... ++ .+....++..+.+.
T Consensus 157 ~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 157 NFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG 234 (278)
T ss_pred hHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence 2222222222222 3445677777666543 233221 322221 212211 22 22222333322211
Q ss_pred CcCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q psy12713 310 DKSC-------MFAYETLGTIEVQRGRLEEAVKCFNKAL 341 (551)
Q Consensus 310 ~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 341 (551)
.|-. ...+++.|.-.++.++|++|..+|+-++
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1222 2346678899999999999999999765
No 287
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.97 E-value=0.0011 Score=37.06 Aligned_cols=33 Identities=36% Similarity=0.743 Sum_probs=30.3
Q ss_pred HHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 484 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 484 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999999864
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.94 E-value=0.004 Score=44.74 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=54.9
Q ss_pred HHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch--HHHHHHHHHHHHHhhhhh
Q psy12713 468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF--HVARAQRHFVWTSTLAEL 534 (551)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~ 534 (551)
.+..+++.++.+|++.++.+.+|..+...|++++|++.+-.++..+|++ ..++..+-.++...|...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567888999999999999999999999999999999999999999876 778888888888777643
No 289
>KOG2041|consensus
Probab=96.91 E-value=0.27 Score=48.42 Aligned_cols=240 Identities=14% Similarity=0.051 Sum_probs=138.4
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 133 (551)
+.+..|-..|...+.+-.++.|...|-+.-....-. .....--...+.+-.--|++++|.+.|-.+-..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 455666666777776666766666665532211100 0000001223444444567777777665432211
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQR 211 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 211 (551)
. -...+...| ++-...+.++..-.-.. ....++..+|..+..+..|++|.++|...-.. -+.
T Consensus 765 L-------Aielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~ 828 (1189)
T KOG2041|consen 765 L-------AIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQ 828 (1189)
T ss_pred h-------hHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhH
Confidence 1 122445566 66666555543222111 12568899999999999999999999875422 234
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy12713 212 HFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ 291 (551)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 291 (551)
..+++++ ..+++-. .+...-|++.+.+-.+|..+...|.-++|.+.|-+.- .| .+ .+..+ ..
T Consensus 829 ~ecly~l------e~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~p---ka--Av~tC-v~ 890 (1189)
T KOG2041|consen 829 IECLYRL------ELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LP---KA--AVHTC-VE 890 (1189)
T ss_pred HHHHHHH------HhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--Cc---HH--HHHHH-HH
Confidence 4555655 5555433 3344568888888999999999999999999886532 12 11 11222 44
Q ss_pred hcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
.+++.+|.+..++.- -|.-.......+.-+...++..+|++..+++
T Consensus 891 -LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 891 -LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred -HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 778888888766531 2222222333344455667778888877776
No 290
>KOG1464|consensus
Probab=96.85 E-value=0.27 Score=42.51 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=53.1
Q ss_pred cccccCCCCCCcch--HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy12713 48 GVELTNGDTNESHE--LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQL 124 (551)
Q Consensus 48 ~~~l~~~~~~~~~~--~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 124 (551)
+.+.......++++ +..+..+.. +...+.++|+.-|+++++..+.. ..-..++-.+..+++++|++++-...|.+.
T Consensus 13 g~EYsdds~sEpdVDlENQYYnsK~-l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 13 GFEYSDDSNSEPDVDLENQYYNSKG-LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CceeccccCCCCCcchHhhhhcccc-ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34444444434333 333333332 23447889999999999988764 444567778888899999999999998888
Q ss_pred hhc
Q psy12713 125 VED 127 (551)
Q Consensus 125 ~~~ 127 (551)
+..
T Consensus 92 LTY 94 (440)
T KOG1464|consen 92 LTY 94 (440)
T ss_pred HHH
Confidence 763
No 291
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.81 E-value=0.022 Score=41.88 Aligned_cols=106 Identities=16% Similarity=0.278 Sum_probs=60.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
+|..++..||+-+|+++.+..+...+++...+..+...|.++..+. ... +|+.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~t--en~d~k~~--------- 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKT--ENPDVKFR--------- 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------Hhc--cCchHHHH---------
Confidence 4666777777777777777777776652222244455555544322 111 12222111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
-.-.+++.+.++..+.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 59 -----yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 59 -----YLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----HHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 2233566666677777777777777776666666666666666666654
No 292
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.79 E-value=0.11 Score=48.24 Aligned_cols=165 Identities=7% Similarity=-0.033 Sum_probs=102.7
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC------------chHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 82 RHCTEEIESTSSNHTKALARLLRATVYIFTSQ------------STKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
.-+++.+..+|. +.++|..+....-..-. .+.-+.++++|++.+|++...... +-.+....
T Consensus 6 ~el~~~v~~~P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~----~l~~~~~~ 78 (321)
T PF08424_consen 6 AELNRRVRENPH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLG----YLEEGEKV 78 (321)
T ss_pred HHHHHHHHhCcc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHh
Confidence 457778889998 88999888876544422 345677788888888877554332 44445566
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
. +.++..+-+++++..+|++...|...-..... .-.++.....|.+++..-....... ......
T Consensus 79 ~-~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~------------~~~~~~ 145 (321)
T PF08424_consen 79 W-DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR------------MTSHPD 145 (321)
T ss_pred C-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc------------cccccc
Confidence 6 77777888888888888888777665544433 2356677777777765322110000 000000
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 276 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 276 (551)
.... ......++..+.....+.|..+.|+..++-.++.+-
T Consensus 146 ~~~~----------e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 146 LPEL----------EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred hhhH----------HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 0000 001134566777888888999999999998888753
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.71 E-value=0.0027 Score=36.48 Aligned_cols=28 Identities=39% Similarity=0.634 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 316 AYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
++..+|.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788888888888888888885543
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.69 E-value=0.047 Score=45.33 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCh----h
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DPNVA----D 172 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~ 172 (551)
.++..+|..|.+.|+.++|++.|.++..... .+......++.+..+.+..+ ++.....++.++-.. .+.+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~-d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFG-DWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4444455555555555555555554443221 22223344444444444444 444444444444322 11221 1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
....-|..++..++|..|...|-.+.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22233444444555555555554443
No 295
>PRK10941 hypothetical protein; Provisional
Probab=96.68 E-value=0.0069 Score=53.67 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred hchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 456 SGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 456 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
...+...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.-...+..
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3347888999999999999999999999999999999999999999999999999999999988776655543
No 296
>KOG0890|consensus
Probab=96.65 E-value=1.8 Score=49.41 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=95.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
..|..-++.|.|..|+-++++- ...+.. ......+..+-.+|...++++.-.-....-.. .| .+...-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~--------sl~~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP--------SLYQQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc--------cHHHHHH
Confidence 6788889999999999999985 222221 22334445555589999999887766654111 22 2233555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
.....| ++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-+...+
T Consensus 1458 ~~e~~g-~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1458 EHEASG-NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred HHHhhc-cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence 667788 9999999999999999998877777777778888888888877766665555555444433
No 297
>PRK10941 hypothetical protein; Provisional
Probab=96.62 E-value=0.025 Score=50.19 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQ 210 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 210 (551)
....+.++-.++...+ +++.|+.+.+.++...|+++.-+..+|.+|.++|.+..|...++..++.+|+++.+...
T Consensus 180 l~Rml~nLK~~~~~~~-~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 180 IRKLLDTLKAALMEEK-QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3445556677778888 88888888888888888888888888888888888888888888888888887776543
No 298
>KOG2396|consensus
Probab=96.62 E-value=0.052 Score=51.04 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC-HHHHHHH
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEY 267 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~ 267 (551)
.-...|+.++...+.+...|.......-+. +.+.+--..|.+++..+|++++.|..-|...+..+. .+.|...
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKK------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 344556666666666666665544333332 445566666666666666666666666655555443 6666666
Q ss_pred HHHHHhcCCCCHHHHHH
Q psy12713 268 FNRSIRVDPENASLYVH 284 (551)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (551)
|.++++.+|+++..|..
T Consensus 163 flrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 163 FLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHhhcCCCChHHHHH
Confidence 66666666666665543
No 299
>KOG1464|consensus
Probab=96.61 E-value=0.32 Score=42.02 Aligned_cols=55 Identities=5% Similarity=0.117 Sum_probs=40.5
Q ss_pred HhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 110 FTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 110 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
...+.++|+.-|++++++.+...++-..++-.+..+.+.++ ++++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-NYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 34477778888888888877777777777777777888887 77777777766553
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.57 E-value=0.29 Score=39.15 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
+.+++.....-...+ +.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.....++.|+
T Consensus 10 v~gLie~~~~al~~~-~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLG-DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 456666777777777 7777777777777777888877777788888888888888888887777777776666666666
Q ss_pred HHh
Q psy12713 216 HKM 218 (551)
Q Consensus 216 ~~~ 218 (551)
+..
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 554
No 301
>KOG0890|consensus
Probab=96.52 E-value=2.2 Score=48.83 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHH
Q psy12713 261 FDGAEEYFNRSIR---VD----PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEA 333 (551)
Q Consensus 261 ~~~A~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 333 (551)
..+-+-.+++++- .+ ......|...|.+ .+..|+++.|...+-.+.+.. -+.+....|......|+-..|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAri-aR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARI-ARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHH-HHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHH
Confidence 4444545555432 22 3346788889988 555899999999998887766 478899999999999999999
Q ss_pred HHHHHHhcccc
Q psy12713 334 VKCFNKALPLA 344 (551)
Q Consensus 334 ~~~~~~a~~~~ 344 (551)
+..+++.++.+
T Consensus 1722 l~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1722 LSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.47 E-value=0.081 Score=42.16 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 326 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 326 (551)
.+..+..+-...++.+++...+.-.--+.|..+..-..-|.+++. .|++.+|+.+++.+....|..+.+--.++.|+..
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 344445555566666777666666666677777766666766666 6777777777777666666666666667777766
Q ss_pred hCCH
Q psy12713 327 RGRL 330 (551)
Q Consensus 327 ~g~~ 330 (551)
.|+.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6654
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.45 E-value=0.0051 Score=51.25 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=55.1
Q ss_pred hhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH
Q psy12713 460 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 518 (551)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (551)
.+.++.+.|.+.|.+++.+-|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34588999999999999999999999999999999999999999999999999998743
No 304
>KOG2396|consensus
Probab=96.32 E-value=0.16 Score=47.94 Aligned_cols=98 Identities=10% Similarity=0.171 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
-...-...|+.+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-+.-.+...-+.+.|...+.+
T Consensus 86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34566778889999999999999988888888888999999999999999999999988887777744458889999999
Q ss_pred HHhcCcCCHHHHHHHHHH
Q psy12713 306 AISIDKSCMFAYETLGTI 323 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~ 323 (551)
+++.+|+++..|...-.+
T Consensus 166 gLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HhhcCCCChHHHHHHHHH
Confidence 999999998877655444
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.22 E-value=1 Score=47.80 Aligned_cols=223 Identities=11% Similarity=0.085 Sum_probs=126.9
Q ss_pred HHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh----cC--CHHHHHHHHHHHHhcCCCChhHHHHHH
Q psy12713 105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA----AS--DFTKAFADLDEAEKVDPNVADSYYQRG 178 (551)
Q Consensus 105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~--~~~~A~~~~~~~~~~~~~~~~~~~~la 178 (551)
..++.....|+.|+..|+++....|+..+- ..+.+..|.....+ |+ .+++|+..|++.- -.|.-|--|...|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG-YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccc-hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 445666677888888888888777765443 45666677666543 21 4677777777643 3566778888999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q psy12713 179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD 257 (551)
Q Consensus 179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 257 (551)
.+|.++|++++-++++.-+++..|.++..-...-.+.+++ ... ..+-..|....--++...|.....-..--..-.-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESL--YKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 9999999999999999999999999887655544444443 000 0222344455555555556543221110000000
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAV 334 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 334 (551)
.++++ +.-.+ .+++..... ...+-.. +- .|..---.+.++++.+..|- .+..+.-.+....|+++-+.
T Consensus 638 ~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 708 (932)
T PRK13184 638 YHKQQ-ATLFC----QLDKTPLQFRSSKMELFLS-FW-SGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFS 708 (932)
T ss_pred Hhhcc-CCcee----eccCchhhhhhhhHHHHHH-HH-hcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHH
Confidence 11111 00000 112211111 1122222 21 46665566677777665543 56666666777888887666
Q ss_pred HHHHHh
Q psy12713 335 KCFNKA 340 (551)
Q Consensus 335 ~~~~~a 340 (551)
......
T Consensus 709 ~~~~~~ 714 (932)
T PRK13184 709 QFSDIL 714 (932)
T ss_pred HHHHHH
Confidence 555443
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.20 E-value=0.16 Score=37.51 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVA 171 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 171 (551)
+..++..| ++-+|++..+..+..++++.
T Consensus 3 A~~~~~rG-nhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARG-NHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHcc-CHHHHHHHHHHHHHHccCCC
Confidence 34455555 55555555555555555444
No 307
>KOG3824|consensus
Probab=96.17 E-value=0.023 Score=49.65 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 213 (551)
..+.-....| +.++|...|+.++.+.|++++++..+|.+....++.-+|-.+|-+++.++|.+..++.+.+.
T Consensus 121 ~~A~~~~~~G-k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDG-KLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhcc-chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3455556778 89999999999999999999999999999998899999999999999999999888876653
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.13 E-value=0.04 Score=34.69 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHH
Q psy12713 316 AYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSH 352 (551)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 352 (551)
.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455566666666666666666666666666655433
No 309
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.07 E-value=0.09 Score=37.79 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Q psy12713 231 LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 278 (551)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344455555555555555555555555555555555555555554443
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.05 E-value=1.4 Score=41.70 Aligned_cols=135 Identities=9% Similarity=0.118 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKR 142 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 142 (551)
..-.--...+..||...|-.....++...|. .+......+.+...+|+|+.+...+..+-..-.... .+...+
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~ 363 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----STLRCR 363 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHH
Confidence 3333445567889999999999999999998 777788889999999999999988766554322221 133345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 143 AVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 143 a~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
-.....+| +++.|.....-.+...-.++++...-+......|-++++...+++.+.++|...
T Consensus 364 ~r~~~~l~-r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 364 LRSLHGLA-RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHhhhchh-hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 66777889 999999999998888777888877777777888999999999999999987643
No 311
>KOG3364|consensus
Probab=96.04 E-value=0.18 Score=38.46 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhC---CchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH
Q psy12713 97 KALARLLRATVYIFTS---QSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADS 173 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 173 (551)
.....+.++.++.... +..+.+.+++..++. .++.-.....+.++..+.+.+ +|++++.+.+..++..|++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlk-eY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLK-EYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHh-hHHHHHHHHHHHHhhCCCcHHH
Confidence 4566677777776554 344567777777751 222223445566777777777 7777777777777777777665
Q ss_pred HH
Q psy12713 174 YY 175 (551)
Q Consensus 174 ~~ 175 (551)
..
T Consensus 108 ~~ 109 (149)
T KOG3364|consen 108 LE 109 (149)
T ss_pred HH
Confidence 43
No 312
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.01 E-value=1.4 Score=41.40 Aligned_cols=243 Identities=13% Similarity=0.060 Sum_probs=143.7
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 83 HCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDE 162 (551)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~ 162 (551)
.+++++...|- .+++|+.........++-+.|+...++++...|. .. +.++.+|...+ +-+....+|++
T Consensus 290 ~~~q~~~y~~~---~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~----~~lse~yel~n-d~e~v~~~fdk 358 (660)
T COG5107 290 IHNQILDYFYY---AEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LT----MFLSEYYELVN-DEEAVYGCFDK 358 (660)
T ss_pred HHHHHHHHhhh---hHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hh----eeHHHHHhhcc-cHHHHhhhHHH
Confidence 45666666665 7788888777778888888888888888777665 22 23666776666 66666666766
Q ss_pred HHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy12713 163 AEKVDPNVADSYYQRGQIYCL---FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVD 239 (551)
Q Consensus 163 ~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 239 (551)
++..-. --+..+..-.. -|+++...+.+-+-.. ....++.-.-.... +..-.+.|...|.++-+
T Consensus 359 ~~q~L~----r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~------r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 359 CTQDLK----RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVL------RKRGLEAARKLFIKLRK 425 (660)
T ss_pred HHHHHH----HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHH------HHhhHHHHHHHHHHHhc
Confidence 653200 00000000000 1222111111111110 11111111111111 22556777777777765
Q ss_pred hCCCcHHHHHHHHHH-HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC--HHH
Q psy12713 240 THSNVVEACTLFAQV-LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFA 316 (551)
Q Consensus 240 ~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~ 316 (551)
..-...+++..-|.+ +...|++.-|-..|+-.+...|+++......-..++. .++-..|...|++++..-... ...
T Consensus 426 ~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred cCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 542333444333332 4567899999999999999888887655444444344 888899999999877553333 456
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 317 YETLGTIEVQRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
|..+-..-..-|+...+...=++...+.|....+
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHH
Confidence 6677777777888888888888888888876443
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.00 E-value=0.093 Score=49.07 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=99.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
+..| +.-.|-+-...++...|..|......+.+....|+|+.+...+..+-..-.....+..-+- ......|+
T Consensus 300 ~~~g-d~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~------r~~~~l~r 372 (831)
T PRK15180 300 LADG-DIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRL------RSLHGLAR 372 (831)
T ss_pred hhcc-CHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHH------Hhhhchhh
Confidence 4456 8888888888899999999999999999999999999999887665544333333332233 23334499
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 280 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (551)
+++|.....-++...-.++++...-+......|-++++...+++.+.++|....
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 999999999998888888888777777778889999999999999999876543
No 314
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.99 E-value=1.4 Score=41.36 Aligned_cols=134 Identities=5% Similarity=-0.033 Sum_probs=85.4
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
.++..||.+...+-.+|.+++-.+.+++.....|- ...+|...-..-...+++......|.+++...-+ .+.+.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~---~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~-- 113 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI---MEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM-- 113 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc---ccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH--
Confidence 47889999999999999999999999999888875 6666666555555667888888888888875432 11111
Q ss_pred HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhc
Q psy12713 139 HIKRAVVHLHAAS---------DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---------FGQYEEALRNLDKTIAL 200 (551)
Q Consensus 139 ~~~la~~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~ 200 (551)
+-.-|.+.-+ ..-+|.+..-.+.-.+|.....|...+..... +.+.+.-...|.+++..
T Consensus 114 ---lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 114 ---LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred ---HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 1112222210 12334443333444567777777776665443 33455666677777765
Q ss_pred C
Q psy12713 201 N 201 (551)
Q Consensus 201 ~ 201 (551)
-
T Consensus 191 P 191 (660)
T COG5107 191 P 191 (660)
T ss_pred c
Confidence 3
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.97 E-value=0.061 Score=36.60 Aligned_cols=67 Identities=7% Similarity=0.060 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 126 (551)
.+...+..|..++...+.++|+..++++++..++.+....++-.+..+|...|+|.+.+.+...-+.
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888999999998888877444555666666777888888887777554443
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.92 E-value=0.61 Score=36.62 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
..++......-...+ +.+++...+...--+.|+.+..-..-|.++...|+|.+|+..++....-.+..+.....++.|+
T Consensus 10 v~gLi~~~~~aL~~~-d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 10 LGGLIEVLMYALRSA-DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 344555556666677 8888888888888888888888888888888888888888888888877777676666666666
Q ss_pred HHh
Q psy12713 216 HKM 218 (551)
Q Consensus 216 ~~~ 218 (551)
+..
T Consensus 89 ~al 91 (153)
T TIGR02561 89 NAK 91 (153)
T ss_pred Hhc
Confidence 555
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.85 E-value=0.021 Score=31.50 Aligned_cols=30 Identities=37% Similarity=0.780 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555544
No 318
>KOG3364|consensus
Probab=95.76 E-value=0.046 Score=41.56 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=58.1
Q ss_pred cChhHHHHhhHHhhc-cCCC-chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 463 SDFTKAFADLDEAEK-VDPN-VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 463 ~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
.+..+.+.+++..++ -+|. .-+..|.++..+.+.|+|++|+.+.+..++..|+|..+....-.+..+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 568889999999997 5554 567889999999999999999999999999999999998777666654
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.63 E-value=0.32 Score=41.75 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHhhc---CCCCchhHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCC--CC----hhHHHH
Q psy12713 113 QSTKAIEDLTQLVED---TSVDPKIKVNAHIKRAVVHLHAASDF-------TKAFADLDEAEKVDP--NV----ADSYYQ 176 (551)
Q Consensus 113 ~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~-------~~A~~~~~~~~~~~~--~~----~~~~~~ 176 (551)
.+++|++.|.-|+-. ....+...+..++.+|.+|...| +. ..|+..|.+++.... .. ..+.+.
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~-~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLG-DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 444555554444331 12223334556677788887777 64 445555555554432 22 467888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy12713 177 RGQIYCLFGQYEEALRNLDKTIALNPN 203 (551)
Q Consensus 177 la~~~~~~~~~~~A~~~~~~~l~~~~~ 203 (551)
+|.+..+.|++++|..+|.+++.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999876443
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.4 Score=46.42 Aligned_cols=130 Identities=18% Similarity=0.025 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHH
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYF 268 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 268 (551)
-++..+...+.+++.++......- ....+...++...+...+...+..+|.+..+..+++......|....+...+
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~----lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAF----LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHH----HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 355555555555666655443331 1133444566666666666677777777777777666666666555555444
Q ss_pred HH-HHhcCCCCHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713 269 NR-SIRVDPENASLYVHR------AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323 (551)
Q Consensus 269 ~~-~~~~~~~~~~~~~~l------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 323 (551)
.. +....|++......+ +.. +...|+..++...++++....|.++.+...+...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRY-LKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 44 556666666654444 443 3336666666666666666666665555444444
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.51 E-value=0.59 Score=38.87 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
.++..+|..|.+.| +.+.|++.|.++....... .+.++.+..+....+++.....+..++-..
T Consensus 37 ~~~~~l~~~~~~~G-d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIG-DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555555555 5555555555554433222 344455555555555555555555555433
No 322
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.45 E-value=0.12 Score=37.72 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=39.9
Q ss_pred HHHHhhhcHHHHHHHHHHHhhcCCCc---h---hHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713 69 KRAFEHEDYLTAIRHCTEEIESTSSN---H---TKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV 130 (551)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 130 (551)
....+.|||.+|++.+.+.++..... . ....++..+|.++...|++++|+..+++++++...
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34566778888877777666554332 1 23456666777777777777777777777776443
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.31 E-value=0.39 Score=37.64 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=42.1
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCH
Q psy12713 257 DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRL 330 (551)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (551)
..++.+++...+...--+.|+.+..-..-|.+++. .|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 35555555555555555566665555555555555 56666666666665555555555555555555555553
No 324
>KOG2422|consensus
Probab=95.24 E-value=2.4 Score=41.25 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=107.0
Q ss_pred hhcHHHHHHHHHHHhhcCCCc---------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc-----C-----------
Q psy12713 74 HEDYLTAIRHCTEEIESTSSN---------HTKALARLLRATVYIFTSQSTKAIEDLTQLVED-----T----------- 128 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~----------- 128 (551)
...|++|...|.-+....+.+ |++.+.+..++.+...+|+.+-|....++++=. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456788888888776655433 789999999999999999999888877776531 1
Q ss_pred -----CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHH-HHhCCHHHHHHHHHHH----
Q psy12713 129 -----SVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN-VADSYYQRGQIY-CLFGQYEEALRNLDKT---- 197 (551)
Q Consensus 129 -----~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~-~~~~~~~~A~~~~~~~---- 197 (551)
|.|.. ...+++..-..+.+.| -+..|.++++-.++++|. +|.+...+..+| .+..+|.=-++.++..
T Consensus 331 L~y~~~eNR~-FyL~l~r~m~~l~~RG-C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 331 LPYIYPENRQ-FYLALFRYMQSLAQRG-CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred CcccchhhHH-HHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 22222 2335555666777888 999999999999999998 776655555544 4455666555555544
Q ss_pred -HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713 198 -IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244 (551)
Q Consensus 198 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 244 (551)
+..-|+... .++.+++.... .....-+.|...+.+|+...|..
T Consensus 409 ~l~~~PN~~y---S~AlA~f~l~~-~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 409 KLSQLPNFGY---SLALARFFLRK-NEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred cHhhcCCchH---HHHHHHHHHhc-CChhhHHHHHHHHHHHHHhCcHH
Confidence 233444332 23332222100 01114567888888888887753
No 325
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=1.6 Score=42.48 Aligned_cols=133 Identities=17% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713 117 AIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDK 196 (551)
Q Consensus 117 A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 196 (551)
++..+...+.+++.++...... + +...+...+ ....+.-.+..++..+|++..+..+++......|....+...+..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~-~-lsi~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAA-F-LSILLAPLA-DSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHH-H-HHhhccccc-cchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444444555555543221 1 445555555 555666666666666666666666666665555555444444433
Q ss_pred -HHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy12713 197 -TIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA 252 (551)
Q Consensus 197 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 252 (551)
+....|++......+..++-........|+..++....+++....|.++.+...+.
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 55555655554444422222112222235555555566666666665554443333
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.14 E-value=0.033 Score=33.20 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=26.5
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
..++.++|.+|...|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999976
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.00 E-value=0.6 Score=40.14 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=70.4
Q ss_pred hhcHHHHHHHHHHHhhcC----CCchhHHHHHHHHHHHHHHhCCchH-------HHHHHHHHhhcC--CCCchhHHHHHH
Q psy12713 74 HEDYLTAIRHCTEEIEST----SSNHTKALARLLRATVYIFTSQSTK-------AIEDLTQLVEDT--SVDPKIKVNAHI 140 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~la~~~~~~g~~~~-------A~~~~~~~~~~~--~~~~~~~~~~~~ 140 (551)
...+++|+..|.-++-.. ......+..+..+|.+|...|+.+. |...|.+++... |..........+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 446777877777665321 1112457888899999999998554 555566655543 223333355778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHH
Q psy12713 141 KRAVVHLHAASDFTKAFADLDEAEKVDPNVA-DSYYQRGQ 179 (551)
Q Consensus 141 ~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~ 179 (551)
.+|.+..+.| ++++|...|.+++.....+. .....+|.
T Consensus 170 LigeL~rrlg-~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 170 LIGELNRRLG-NYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 8999999999 99999999999997644332 24444443
No 328
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.98 E-value=0.037 Score=31.93 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=28.0
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHHHhhcC
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDKTIALN 513 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 513 (551)
++++..+|.+-...++|++|+..|++++++.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999874
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.97 E-value=0.061 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.0
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHH--HHHHhhcCCch
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRN--LDKTIALNPNF 516 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 516 (551)
++.++.+|..+..+|++++|+.. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35678899999999999999999 55888888765
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.97 E-value=0.069 Score=46.92 Aligned_cols=85 Identities=11% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCH
Q psy12713 235 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 314 (551)
Q Consensus 235 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 314 (551)
.++-...|+++..|...+......|-+.+--..|.+++..+|.+.+.|..-+..-+...++.+.+...|.+++..+|++|
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444556667777777766666777777777777777777777776655332222236777777777777777777776
Q ss_pred HHHHH
Q psy12713 315 FAYET 319 (551)
Q Consensus 315 ~~~~~ 319 (551)
..|..
T Consensus 177 ~iw~e 181 (435)
T COG5191 177 RIWIE 181 (435)
T ss_pred hHHHH
Confidence 66553
No 331
>KOG1310|consensus
Probab=94.94 E-value=0.15 Score=48.40 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh---CCchHHHHHHHHHhhcCCCCchhH
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT---SQSTKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
..++..+..|...+..+....|+..|.++++..|. ....+...+.++++. |+.-.|+.....++.++|..
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---- 444 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---- 444 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH----
Confidence 46677778888888888889999999999999998 778888888877754 45566777777777777654
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV 170 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~ 170 (551)
..+++.++.++..++ ++.+|+++...+....|.+
T Consensus 445 ~kah~~la~aL~el~-r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 445 QKAHFRLARALNELT-RYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHHHHh-hHHHhhhhHHHHhhcCchh
Confidence 557778888888888 8888888888777777744
No 332
>KOG1839|consensus
Probab=94.89 E-value=0.6 Score=49.85 Aligned_cols=138 Identities=17% Similarity=0.082 Sum_probs=104.6
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHH------HHHH-HhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIR------HCTE-EIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS-- 129 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~-~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-- 129 (551)
......+..|......|.+.+|.+ .+.. .-...|+ ....+..++..+...|++++|+..-.++.-+..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~---~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPE---VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchh---HHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence 356778889999999999998888 5553 3344566 889999999999999999999999888765422
Q ss_pred --CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 130 --VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 130 --~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.+.......+.+++...+..+ +...|...+.++... .|.-.....+++.++...++++.|+.+.+.+..
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~-~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVK-NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhcc-CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 222333556777888888888 888888888887654 344455667788888888888888888888877
Q ss_pred c
Q psy12713 200 L 200 (551)
Q Consensus 200 ~ 200 (551)
.
T Consensus 1086 ~ 1086 (1236)
T KOG1839|consen 1086 K 1086 (1236)
T ss_pred H
Confidence 3
No 333
>KOG2422|consensus
Probab=94.89 E-value=1.6 Score=42.37 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhc------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 152 DFTKAFADLDEAEKV------------DPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
.|++|...|.-+... .|-+.+.+..++.++..+|+.+.|....++++
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 677888888777654 35567889999999999999998888887776
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.83 E-value=4 Score=39.24 Aligned_cols=85 Identities=9% Similarity=-0.062 Sum_probs=51.0
Q ss_pred HHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q psy12713 107 VYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ 186 (551)
Q Consensus 107 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 186 (551)
++.....+.-....+.+++....+ -.+++.++.+|...| .++-...+++.++.+-++...-..++..|.. ++
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e~-----kmal~el~q~y~en~--n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik 146 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGES-----KMALLELLQCYKENG--NEQLYSLWERLVEYDFNDVVIGRELADKYEK-IK 146 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHhcC--chhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hc
Confidence 333333444445555555554432 235566777776665 4555666677777766666666666666655 67
Q ss_pred HHHHHHHHHHHHh
Q psy12713 187 YEEALRNLDKTIA 199 (551)
Q Consensus 187 ~~~A~~~~~~~l~ 199 (551)
...+..+|.+++.
T Consensus 147 ~sk~a~~f~Ka~y 159 (711)
T COG1747 147 KSKAAEFFGKALY 159 (711)
T ss_pred hhhHHHHHHHHHH
Confidence 7777777777664
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.83 E-value=0.89 Score=33.94 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCcCCH-
Q psy12713 255 LVDQEDFDGAEEYFNRSIRVDPEN------------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS-------IDKSCM- 314 (551)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~- 314 (551)
.+..|-|++|...++++.+....- .-++-.++..+.. +|+|++++..-.+++. ++.+..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccch
Confidence 344566777777777766553221 2234455555444 7777776665555553 233332
Q ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 315 ---FAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 315 ---~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
.+.+..+..+...|+.++|+..|+.+-+.
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34456778888889999999999887654
No 336
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=1.8 Score=35.02 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhhcCCChh
Q psy12713 152 DFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF----HVARAQRHFVVHKMIVPGDRE 225 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 225 (551)
..++|+..|...-+..-.. .-+....+.+..+.|+...|+..|..+-.-.|-. ..+...-+ .++...|
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa------~lLvD~g 146 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA------YLLVDNG 146 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH------HHHhccc
Confidence 5555555555544433222 2344455556666666666666666555433221 11222223 2222335
Q ss_pred HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 288 (551)
Q Consensus 226 ~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 288 (551)
.|+......+.+- ..+|-...+.-.+|..-.+.|++.+|...|.+... +...+....+.+.+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 5555554444322 12233345556667777777777777777776655 44444444455544
No 337
>KOG1310|consensus
Probab=94.66 E-value=0.15 Score=48.41 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=64.9
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Q psy12713 258 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVK 335 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 335 (551)
.+....|+..|.+++...|.....+.+.+.+++++ .|+.-.|+.....+++++|....+++.|+.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34556677777777777777777777777665542 3556667777777777777777777777777777777777777
Q ss_pred HHHHhcccccCHHH
Q psy12713 336 CFNKALPLARDEAE 349 (551)
Q Consensus 336 ~~~~a~~~~~~~~~ 349 (551)
....+....|.+..
T Consensus 467 ~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 467 CHWALQMSFPTDVA 480 (758)
T ss_pred hHHHHhhcCchhhh
Confidence 77777666775443
No 338
>KOG2581|consensus
Probab=94.61 E-value=3.8 Score=38.05 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=99.6
Q ss_pred hHHHHHH--HHHHHhhhcHHHHHHHHHHHhhcCCCc------hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--C
Q psy12713 61 ELDLLSK--AKRAFEHEDYLTAIRHCTEEIESTSSN------HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--V 130 (551)
Q Consensus 61 ~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~ 130 (551)
++.++.. ...++.++++.+|..+-+..+...... ...+..|+.+..++-..|+...-...+...+.... .
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 4444443 444456689999998887765432111 33567788888888888987776666666555321 2
Q ss_pred CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 131 DPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV--DP--NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 131 ~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
+..........+-..|...+ .|+.|-....+..-- .. ..+...+.+|.+..-+++|..|.+++-.++...|.+.
T Consensus 204 d~e~qavLiN~LLr~yL~n~-lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNK-LYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred cchhHHHHHHHHHHHHhhhH-HHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 23333445566778888889 999998887776421 11 2255678899999999999999999999999999743
No 339
>KOG2041|consensus
Probab=94.52 E-value=5.8 Score=39.73 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=112.4
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHH
Q psy12713 68 AKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHL 147 (551)
Q Consensus 68 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 147 (551)
...+...-..++|+. .++.+| ++..|..+|......-.++.|...|-+.-... .+. .--.++.++.
T Consensus 670 ~~~Lve~vgledA~q----fiEdnP----HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik--~vkrl~~i~s 735 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQ----FIEDNP----HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIK--LVKRLRTIHS 735 (1189)
T ss_pred HHHHHHHhchHHHHH----HHhcCC----chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chh--HHHHhhhhhh
Confidence 334444445666664 455677 68899999998888777777777766543321 110 0011222211
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHH
Q psy12713 148 HAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERV 227 (551)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (551)
... ..+.+-.--|++++|.+.|-.+=. .+. -. .++...|+|
T Consensus 736 ~~~-------------------------q~aei~~~~g~feeaek~yld~dr---rDL--Ai---------elr~klgDw 776 (1189)
T KOG2041|consen 736 KEQ-------------------------QRAEISAFYGEFEEAEKLYLDADR---RDL--AI---------ELRKKLGDW 776 (1189)
T ss_pred HHH-------------------------HhHhHhhhhcchhHhhhhhhccch---hhh--hH---------HHHHhhhhH
Confidence 111 112222223555555555533211 110 00 111122555
Q ss_pred HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 228 EQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 228 ~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
-...+.++..-.-..+ .-.++..+|..+..+..|++|.++|.+.-.. -+...++++ ...+++-. .
T Consensus 777 frV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~-le~f~~LE----~ 843 (1189)
T KOG2041|consen 777 FRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYR-LELFGELE----V 843 (1189)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHH-HHhhhhHH----H
Confidence 5544444332111111 1357788888888888888888888765321 234555555 55555433 3
Q ss_pred HHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 306 AISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
....-|++...+-.+|..+...|.-++|++.|-+.
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 33345777788888888888888888888887654
No 340
>KOG4814|consensus
Probab=94.52 E-value=5.5 Score=39.45 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNA 138 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 138 (551)
..+.+.|...++..+|..+++.|...+...|.+ ...+.....++.||..+.+.+.|.+++++|-+.+|.++-...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~-- 432 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL-- 432 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH--
Confidence 345677788888888888888888888777664 223556677788888888888888888888888887754333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
.+-.+....+ ..++|+.........
T Consensus 433 --~~~~~~~~E~-~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 --LMLQSFLAED-KSEEALTCLQKIKSS 457 (872)
T ss_pred --HHHHHHHHhc-chHHHHHHHHHHHhh
Confidence 3566666777 788888877766544
No 341
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.13 Score=44.86 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=63.8
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWT 528 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 528 (551)
+...++++.|....++.+.++|+++.-+.-.|.+|.++|-+.-|++.++..++.-|+.+.+-.-...+..
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999999987766655543
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.38 E-value=0.079 Score=44.46 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=47.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 205 (551)
.....+ +.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~-D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESG-DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccC-ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344556 778888888888888888888888888888888888888888888888887653
No 343
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.30 E-value=0.62 Score=43.13 Aligned_cols=99 Identities=13% Similarity=0.153 Sum_probs=60.4
Q ss_pred CcchHHHH----HHHHHHHhhhcHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHHHHHHhCCchHHH
Q psy12713 58 ESHELDLL----SKAKRAFEHEDYLTAIRHCTEEIESTSSN---------------HTKALARLLRATVYIFTSQSTKAI 118 (551)
Q Consensus 58 ~~~~~~~~----~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~ 118 (551)
-+.++.|+ ..|..++++|+|..|..-|..+|+...+. .....+-..+..||+++++.+-|+
T Consensus 169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 34555554 45667888888888888888887754321 112233345666666666666676
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 119 EDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLD 161 (551)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~ 161 (551)
....+.+.++|.... -++..|.++..+. +|.+|-..+-
T Consensus 249 nh~hrsI~lnP~~fr----nHLrqAavfR~Le-Ry~eAarSam 286 (569)
T PF15015_consen 249 NHSHRSINLNPSYFR----NHLRQAAVFRRLE-RYSEAARSAM 286 (569)
T ss_pred HHHhhhhhcCcchhh----HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 666666666665533 2333666666666 6666655443
No 344
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.24 E-value=0.13 Score=45.38 Aligned_cols=94 Identities=10% Similarity=0.034 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHH-HHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 267 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET-LGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
.|.++....|+++..|...+.- ..+.|.+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++..+|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y-~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAY-VIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 3445555678889988877764 555889999999999999999999999987 66677889999999999999999999
Q ss_pred CHHHHHHHHhHHHHHH
Q psy12713 346 DEAELSHIYSLRDAAI 361 (551)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (551)
.++.+|..+...+...
T Consensus 174 ~~p~iw~eyfr~El~y 189 (435)
T COG5191 174 RSPRIWIEYFRMELMY 189 (435)
T ss_pred CCchHHHHHHHHHHHH
Confidence 9999998876664443
No 345
>KOG1463|consensus
Probab=94.22 E-value=4.1 Score=36.88 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhc--CCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIES--TSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQ 123 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 123 (551)
..+..+.......++++++..+..++.. .|.+ ...-.....+|..+.+.|+.++-......
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~ 73 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS 73 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3477788888888889999999998874 2221 33456678889999999988765555444
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=3.8 Score=36.10 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=128.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH-HHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK-VNA 138 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 138 (551)
+..|......+++++|+..|.+++...-.. ...-.+...++..|...|++..-.+..........+..... ...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 678999999999999999999999873221 22456778899999999988764444333222100000000 000
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCH
Q psy12713 139 HIKRAVVH-LHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIAL------NPNFH 205 (551)
Q Consensus 139 ~~~la~~~-~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~~~~~ 205 (551)
...+...+ .... .++.-+..+...++..... ...-..+..++++.|.|.+|+......+.. .++-.
T Consensus 87 irtLiekf~~~~d-sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSD-SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 00000000 1112 3344444444333321110 122234556666667777766665554432 12233
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh-----CCCcHH--HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT-----HSNVVE--ACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-- 276 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 276 (551)
..+..-..+++.. .+..++...+..+-.. .|.... .-..-|..+....+|..|..+|-++++-..
T Consensus 166 ~vhllESKvyh~i------rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l 239 (421)
T COG5159 166 TVHLLESKVYHEI------RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLL 239 (421)
T ss_pred ehhhhhHHHHHHH------HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccc
Confidence 3444444444444 4444444444433322 122222 222334455566666667666666665321
Q ss_pred -CCHHHH-----HHHHHHHHHhcCCHHHHHHHHH--HHHh-cCcCCHHHHHHHHHHHH--HhCCHHHHHHHHHHhccccc
Q psy12713 277 -ENASLY-----VHRAMLMLQARGNVDEAIKLIE--KAIS-IDKSCMFAYETLGTIEV--QRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 277 -~~~~~~-----~~l~~~~~~~~~~~~~A~~~~~--~~~~-~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~ 345 (551)
.+..+. ..+..+. .+..++-...+. ..++ .+.....+....+..+- ...++..|+..|+.-+..+|
T Consensus 240 ~~d~kAc~sLkYmlLSkIM---lN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 240 KMDVKACVSLKYMLLSKIM---LNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred cchHHHHHHHHHHHHHHHH---HhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 222222 1222221 222233222221 1222 22333445555555543 23467777777776665444
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.06 E-value=0.07 Score=27.83 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.0
Q ss_pred hHHHhhhhhHHHHhcCHHHHHHHHHH
Q psy12713 483 ADSYYQRGQIYCLFGQYEEALRNLDK 508 (551)
Q Consensus 483 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 508 (551)
+.+.+.+|.++...|++++|...+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 35678899999999999999988763
No 348
>KOG4814|consensus
Probab=93.90 E-value=2.2 Score=42.06 Aligned_cols=94 Identities=9% Similarity=0.000 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF 213 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 213 (551)
-+-|.-.++.. +|..+++.|...+...|.+ ......+..||....+.+.|.++++++-+.+|.++........
T Consensus 358 Wn~A~~~F~~~-~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 358 WNTAKKLFKME-KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34555666667 7777777777777765554 3455667777777778888888888877777776655544443
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHh
Q psy12713 214 VVHKMIVPGDRERVEQSLKEFRNFVDT 240 (551)
Q Consensus 214 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 240 (551)
....- |.-++|+.+.......
T Consensus 437 ~~~~E------~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAE------DKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHh------cchHHHHHHHHHHHhh
Confidence 33333 6667777766665543
No 349
>KOG0128|consensus
Probab=93.85 E-value=8.9 Score=39.34 Aligned_cols=279 Identities=9% Similarity=-0.016 Sum_probs=158.6
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
+.+..+.....--..|.-++=+..++.-+..++. ....+..+..+++..|++++-...-.++..+.|..+..+..-.
T Consensus 78 sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y---~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 78 SSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSY---KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred cCcccccccCCccccccchhHHHHHHHHhccccc---chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3344444444444455555566667777777776 7788888889999999999988888888888888877655422
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH-------HHhCCHHHHHHHHHHHHhcCCCC-------H
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIY-------CLFGQYEEALRNLDKTIALNPNF-------H 205 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-------~~~~~~~~A~~~~~~~l~~~~~~-------~ 205 (551)
......- ..+ +...+...|++++... ..+..|...+... ...++++.....|.+++..-... .
T Consensus 155 ~d~~~mt-~s~-~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~w 231 (881)
T KOG0128|consen 155 KDELSMT-QSE-ERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIW 231 (881)
T ss_pred HHHHhhc-cCc-chhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHH
Confidence 2222222 225 7888899999988643 3444444444433 44566788888888887643221 1
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH----HHHHHH--H-HHHhccCHHHHHHHHHH-------H
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE----ACTLFA--Q-VLVDQEDFDGAEEYFNR-------S 271 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la--~-~~~~~~~~~~A~~~~~~-------~ 271 (551)
..+......+... -..++-+..+...+... -+.. .|.... . ......+++.|..-+.+ .
T Consensus 232 e~~~E~e~~~l~n------~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~ 304 (881)
T KOG0128|consen 232 EMYREFEVTYLCN------VEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL 304 (881)
T ss_pred HHHHHHHHHHHHh------HHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 1122222222221 33455666666665543 2211 111111 1 11233445555444333 3
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHhcccccCHHHH
Q psy12713 272 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV-QRGRLEEAVKCFNKALPLARDEAEL 350 (551)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~ 350 (551)
++..|.....|..+-..... .|++-.-...+++++...+.+...|...|...- .++-.+.+...+.+++...|-...+
T Consensus 305 ~q~~~~~~q~~~~yidfe~~-~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL 383 (881)
T KOG0128|consen 305 VQKEPIKDQEWMSYIDFEKK-SGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDL 383 (881)
T ss_pred hhhhHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHH
Confidence 33333333344444444233 788777777888888777777777777665442 3344455566666677766666555
Q ss_pred HH
Q psy12713 351 SH 352 (551)
Q Consensus 351 ~~ 352 (551)
+.
T Consensus 384 ~~ 385 (881)
T KOG0128|consen 384 WK 385 (881)
T ss_pred HH
Confidence 43
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.79 E-value=0.32 Score=35.47 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHhCCchHHHHHHHHHhhcCCCCch-----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 108 YIFTSQSTKAIEDLTQLVEDTSVDPK-----IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 108 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
..+.|++.+|++.+.+.......... ....++..+|.++...| ++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 34566777776666666554322211 22335555666666666 666666666666654
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.68 E-value=0.12 Score=30.64 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
.++.++|.+|...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788899999999999999998887753
No 352
>KOG0529|consensus
Probab=93.61 E-value=4 Score=38.13 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC---HHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEA 299 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~A 299 (551)
.-.++-+.+...+++.+|++..+|+....++.+.+ ++..=+...+++++.+|.+..+|...-.+.-..... ..+=
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 35567778888899999999999999999998776 367888899999999999988776655543322222 5667
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHH------hCC------HHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 300 IKLIEKAISIDKSCMFAYETLGTIEVQ------RGR------LEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
+++..+++..++.+..+|.....+... .|+ ...-++....|+-.+|++...|...
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 888899999899999999888777663 231 2344566667777889888876554
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.54 E-value=12 Score=40.02 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=95.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh----C---CchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT----S---QSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-..+.+..+.|++|+..|+++-...|+-....++.+..|.+...+ | .+++|+..|++.-. .|.-|- -|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~ 555 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPL----EY 555 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCch----HH
Confidence 345677889999999999999999987544567888888887754 2 46677777776543 333332 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCCH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG-----QYEEALRNLDKTIALNPNFH 205 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~l~~~~~~~ 205 (551)
...|.+|...| ++++-++++.-+++..|++|.+-...-.+..++. +-..|....--++...|...
T Consensus 556 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 556 LGKALVYQRLG-EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HhHHHHHHHhh-hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 66899999999 9999999999999999999876544443333322 23345566666666666543
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.52 E-value=6.4 Score=38.32 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=66.2
Q ss_pred HHHHHHhhhcHHHHHHHHH--HHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCT--EEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
.=+.....|+++++..... +.+..-| ..-...++..+.++|-++.|+...+ ++..+. .
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~-----~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF-------e 326 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP-----KDQGQSIARFLEKKGYPELALQFVT--------DPDHRF-------E 326 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG-------HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH-------H
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC-----hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh-------H
Confidence 3445567899999877775 3333333 2335566777778888888877632 233323 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
...+.| +.+.|.+..+ ..+++..|..+|...+.+|+++-|.++|+++-
T Consensus 327 LAl~lg-~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 327 LALQLG-NLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHCT--HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHhcC-CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 556788 8888876543 34477899999999999999999999998853
No 355
>KOG1538|consensus
Probab=93.46 E-value=1.8 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=25.9
Q ss_pred hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 219 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 219 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
......++|.+|....++.-+.- +.+++-.|+.+....++++|.+.|-
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHH
Confidence 34444566666666554432221 2355566666666666666655543
No 356
>KOG3807|consensus
Probab=93.17 E-value=6.3 Score=35.56 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 316 AYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
.-..++.|..++|+..+|++.++...+-.|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 345789999999999999999998877666
No 357
>KOG1538|consensus
Probab=93.14 E-value=8.3 Score=38.30 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-----C-----chhHHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-----S-----NHTKALARLLRATVYIFTSQSTKAIEDLTQ 123 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-----~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 123 (551)
..|-.+|...+..=+++-|.+.|.++-...- + ......--..+|.++...|++.+|.+.|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566777777777788888887776522100 0 000001124566677777788887777765
No 358
>KOG0529|consensus
Probab=93.12 E-value=7.6 Score=36.36 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHH
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ--YEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQS 230 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 230 (551)
.++-+.+...+++.+|+.-.+|+.+..++.+.+. +..=+...+++++.+|.+..+|..+-.+.-.. -.......+-
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~--~~~~~~~~~E 168 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA--ERSRNLEKEE 168 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH--hcccccchhH
Confidence 4455556666666677666666666666665543 45566666677777766666655444433322 1122245566
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh------ccC------HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy12713 231 LKEFRNFVDTHSNVVEACTLFAQVLVD------QED------FDGAEEYFNRSIRVDPENASLYVHR 285 (551)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~------~~~A~~~~~~~~~~~~~~~~~~~~l 285 (551)
+++..+++..++.+..+|.....++.. .|+ ...-+.....++-.+|++..+|+..
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 666666666677776666666555541 221 2234455556666677777766653
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.81 Score=40.16 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q psy12713 139 HIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARA 209 (551)
Q Consensus 139 ~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~ 209 (551)
..++=..+...+ +++.|....++.+..+|.++.-+...|.+|.++|.+.-|++.+...++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~-~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLREL-QWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhh-chHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 334455666777 8888888888888888888888888888888888888888888888888888776544
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.86 E-value=10 Score=37.03 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12713 144 VVHLHAASDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPG 222 (551)
Q Consensus 144 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 222 (551)
......+ +++++....... ++-|.- ......++..+.++|..+.|+... .++...+.++ ...
T Consensus 269 k~av~~~-d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~l---- 331 (443)
T PF04053_consen 269 KTAVLRG-DFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQL---- 331 (443)
T ss_dssp HHHHHTT--HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHC----
T ss_pred HHHHHcC-Chhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---Hhc----
Confidence 3445567 888877766521 112222 344666777888888888887643 3455566555 444
Q ss_pred ChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12713 223 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 302 (551)
Q Consensus 223 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 302 (551)
|+.+.|.+..++ .+++..|..+|...+..|+++-|..+|+++-. +..+..+|.. .|+.+.=.+.
T Consensus 332 --g~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~-~g~~~~L~kl 395 (443)
T PF04053_consen 332 --GNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSS-TGDREKLSKL 395 (443)
T ss_dssp --T-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHH-CT-HHHHHHH
T ss_pred --CCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHH-hCCHHHHHHH
Confidence 888888776543 35678999999999999999999999988532 2334445444 7887665565
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q psy12713 303 IEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKA 340 (551)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 340 (551)
.+.+...... ...-.+++..|+.++.++.+.+.
T Consensus 396 ~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555443321 22233455667777777777655
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.56 E-value=0.23 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 315 FAYETLGTIEVQRGRLEEAVKCFN 338 (551)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~ 338 (551)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666677777777777766654
No 362
>KOG3783|consensus
Probab=92.09 E-value=13 Score=36.35 Aligned_cols=140 Identities=12% Similarity=0.015 Sum_probs=83.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChh--HHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy12713 179 QIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRE--RVEQSLKEFRNFVDTHSNVVEACTLFAQVL 255 (551)
Q Consensus 179 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 255 (551)
.+....|+-+++...+-++....+.....-..+...++.. ..+...+ +.+...+.+.......|+++......+..+
T Consensus 198 ~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l 277 (546)
T KOG3783|consen 198 SVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARIL 277 (546)
T ss_pred HHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHH
Confidence 3444566667777766665544433333222222222222 2222222 224555555666677888888888888888
Q ss_pred HhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Q psy12713 256 VDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 321 (551)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 321 (551)
...|+.+.|+..+...+. +.. ...++.+|.++.. +.+|..|-..+....+...-+.-.|..++
T Consensus 278 ~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 278 SIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 888888888888887776 222 2245667777666 78888888888887766544333343333
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.92 E-value=8.9 Score=34.31 Aligned_cols=100 Identities=10% Similarity=-0.073 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCch-HHHHHHHHHhhcC--CCCchh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQST-KAIEDLTQLVEDT--SVDPKI 134 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~--~~~~~~ 134 (551)
.++.++.-|..+++.|++.-|..+..-.++..... +.+....-.++.+....+.-+ +-.+..+++++.. ...+.-
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 45666777777788888877766555444331100 113333345555554443222 2334444444432 111111
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADL 160 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~ 160 (551)
....+..+|..+++.+ ++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~-~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEG-NYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc-cHHHHHHHH
Confidence 1234455777777777 777776665
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.90 E-value=2.2 Score=29.29 Aligned_cols=55 Identities=7% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 104 RATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADL 160 (551)
Q Consensus 104 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~ 160 (551)
.|.-++...+.++|+..++++++..++.+. ...++-.+..+|...| ++.+.+.+.
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~G-kyr~~L~fA 66 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWG-KYREMLAFA 66 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344444445555555555555554444332 2334444444555555 555544443
No 365
>KOG1463|consensus
Probab=91.66 E-value=10 Score=34.49 Aligned_cols=175 Identities=16% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC--hh
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV-----DPNV--AD 172 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~-----~~~~--~~ 172 (551)
..+...|+..++|.+|+......+.. .-++....+..+..-...|.... +..+|...+..+-.. .|.. +.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~-Nl~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALR-NLPKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHh-cchhHHHHHHHHHHhhcccccCHHHHHH
Confidence 34555666666666666665554431 11222223334444566666666 666666666555432 1222 11
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHH
Q psy12713 173 SYYQRGQIYCLFGQYEEALRNLDKTIALNP---NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACT 249 (551)
Q Consensus 173 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 249 (551)
.-..-|.++..-.+|.-|..+|-++++-.. ++..+...+-+.+... +....-+--.++-.-+.+++....+.++..
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcK-IMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCK-IMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHH-HHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 222334455555666666666666665422 1223333332222211 111112222233333444555555666666
Q ss_pred HHHHHHHh--ccCHHHHHHHHHHHHhcCCCC
Q psy12713 250 LFAQVLVD--QEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 250 ~la~~~~~--~~~~~~A~~~~~~~~~~~~~~ 278 (551)
..+..+.. ..+|+.|+..|..-+..+|--
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 66666643 346777777777766655543
No 366
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.65 E-value=0.43 Score=27.57 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
+++..+|.+....++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888765
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.58 E-value=0.57 Score=26.72 Aligned_cols=21 Identities=14% Similarity=-0.113 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCCchHHHHH
Q psy12713 100 ARLLRATVYIFTSQSTKAIED 120 (551)
Q Consensus 100 ~~~~la~~~~~~g~~~~A~~~ 120 (551)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555555555555
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=9.8 Score=33.69 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CcCCH-
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI-----DKSCM- 314 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~- 314 (551)
.-..++..+.+.|+|.+|+....-.+.. .+.-..++..-..+|.. ..+..++...+..+-.. .|...
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~-irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHE-IRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHH-HHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 3456778889999999999887766542 23445566666777665 77777777766655432 23222
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 315 -FAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 315 -~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
..-..-|.++..-.+|.-|..+|-.+++-
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 22233466677778899999999888774
No 369
>KOG3807|consensus
Probab=91.33 E-value=11 Score=34.13 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
...-+..-+...+..+..+-++.-..+++++|+ .+.++..++.-- .--..+|.+.++++++.
T Consensus 184 ~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~e---CA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 184 LRPEDEIMQKAWRERNPPARIKAAYQALEINNE---CATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred cChHHHHHHHHHHhcCcHHHHHHHHHHHhcCch---hhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 334455566677888888889999999999998 999998887642 23456788888888764
No 370
>KOG1839|consensus
Probab=91.33 E-value=2.4 Score=45.67 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhCCHHHHHH------HHHHH-HhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC-----
Q psy12713 174 YYQRGQIYCLFGQYEEALR------NLDKT-IALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH----- 241 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~------~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----- 241 (551)
....|......|.+.+|.+ .+... -.+.|.....+..++..+.+. |+.++|+..-.++.-+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~------~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL------GDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh------cchHHHHHhcccceeeechhcc
Confidence 3455666666777777776 44422 233566666777777666666 99999998887765432
Q ss_pred ---CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12713 242 ---SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 310 (551)
Q Consensus 242 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 310 (551)
|+....+.+++...+..++...|...+.++... .|.-.....+++.++.. .++++.|+.+.+.+....
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG-VEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888999888887764 34445556677777555 899999999999998753
Q ss_pred c--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 311 K--------SCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 311 ~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
. .....+..+++++...+++..|....+....+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2 12455667778887788877777766665544
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.18 E-value=15 Score=35.53 Aligned_cols=191 Identities=16% Similarity=0.040 Sum_probs=118.7
Q ss_pred HHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHH
Q psy12713 69 KRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLH 148 (551)
Q Consensus 69 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 148 (551)
...-.+..+.-...++.+++.... +-.+++.++.||... ..++-...+++.++.+-++....- .++..|..
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~R----eLa~~yEk 144 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGR----ELADKYEK 144 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHH----HHHHHHHH
Confidence 334445556667788999998887 577899999999988 567788889998888776644332 36666655
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---C---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--hc
Q psy12713 149 AASDFTKAFADLDEAEKVDPN---V---ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKM--IV 220 (551)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~~~~---~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 220 (551)
+ +.+++..+|.+++...-. + .+.|-.+-.. --.+.+.-+....+.-..... ..+.+.+.- ..
T Consensus 145 -i-k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~------~~~~Vl~qdv~~~ 214 (711)
T COG1747 145 -I-KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGE------GRGSVLMQDVYKK 214 (711)
T ss_pred -h-chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhcc------chHHHHHHHHHHH
Confidence 7 899999999998865321 1 1222222110 112222222222222111111 111111211 45
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--------------------ccCHHHHHHHHHHHHhcCCCC
Q psy12713 221 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD--------------------QEDFDGAEEYFNRSIRVDPEN 278 (551)
Q Consensus 221 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--------------------~~~~~~A~~~~~~~~~~~~~~ 278 (551)
|....++.+|+..+...++.+..+..+.-.+...+.. -.++..++.-|++.+..+..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 6677889999999998888887777666555554444 557788888888887776544
No 372
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.96 E-value=1.7 Score=38.80 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 137 NAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 137 ~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.++..++..+...| +++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~-~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACG-RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666666666 777777777777777777777777777777777777777777666554
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.56 E-value=2.8 Score=35.11 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=56.2
Q ss_pred HHhCCchHHHHHHHHHhhcCC-CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHH
Q psy12713 109 IFTSQSTKAIEDLTQLVEDTS-VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPN----VADSYYQRGQIYCL 183 (551)
Q Consensus 109 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~ 183 (551)
+..-.-++|...|-++-.... ++ ....+.+|..|.. . +.++++..+.+++++.+. +++++..++.++..
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t----~elq~aLAtyY~k-r-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELET----AELQYALATYYTK-R-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 444344678777776554322 22 3344558877774 4 699999999999998544 48999999999999
Q ss_pred hCCHHHHH
Q psy12713 184 FGQYEEAL 191 (551)
Q Consensus 184 ~~~~~~A~ 191 (551)
+|+++.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999885
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.37 E-value=0.87 Score=41.42 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred HHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 468 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
|..+|.+|+.+.|++...|..+|.++...|+.=.|+-+|-+++-..--++.|..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998876679999999999987
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.45 E-value=2 Score=38.34 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHh----hhc--HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhH
Q psy12713 62 LDLLSKAKRAFE----HED--YLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIK 135 (551)
Q Consensus 62 ~~~~~~a~~~~~----~g~--~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 135 (551)
...+.++-.++. .++ |..=+...++.++.. ...++..++..+...|+++.++..+++.+..+|-+..
T Consensus 116 ~~~~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~-----~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-- 188 (280)
T COG3629 116 GLRFEQAGELLSEGPVLGDDRFDEWVLEQRRALEEL-----FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP-- 188 (280)
T ss_pred hHHHHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH--
Confidence 335666655555 344 666555556655542 6788999999999999999999999999999998855
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
.|..+-..|...| +...|+..|++.-+.
T Consensus 189 --~~~~lm~~y~~~g-~~~~ai~~y~~l~~~ 216 (280)
T COG3629 189 --AYLRLMEAYLVNG-RQSAAIRAYRQLKKT 216 (280)
T ss_pred --HHHHHHHHHHHcC-CchHHHHHHHHHHHH
Confidence 5555889999999 999999999988774
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.41 E-value=3.1 Score=38.81 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 304 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 304 (551)
..+..||.++++.+-|+....+.+..+|..+..+...+.+ ++.+.+|.+|-..+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAav-fR~LeRy~eAarSam 286 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAV-FRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555555555 333555555554443
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.28 E-value=7.3 Score=37.15 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
....++..+++.++|..|...+..+...-|.. ..........|..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999864431 111223334455567888999999999998764
No 378
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.24 E-value=10 Score=33.28 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDP 168 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~ 168 (551)
+|.+..+.| +|++.+.++++++..+|
T Consensus 7 ~Aklaeq~e-Ry~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 7 LAKLAEQAE-RYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHccCC
Confidence 455555555 55555555555555544
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.15 E-value=0.77 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.9
Q ss_pred HhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 486 YYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 486 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
.+.+|.+|..+|+.+.|.+.++.++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 357899999999999999999999953
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.86 E-value=31 Score=35.65 Aligned_cols=127 Identities=11% Similarity=0.040 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHI 140 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 140 (551)
....|..|...+..|++..+.....+ +.-.|- . .+..........+.. .-..+...++..|+.|... .+.
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL---~--~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~--~Lr 102 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPT-LKDYPL---Y--PYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPAR--SLQ 102 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-ccCCCc---H--hHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHH--HHH
Confidence 46789999999999999998766554 343442 1 222222222222221 1224444555566655422 112
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy12713 141 KRAV-VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNP 202 (551)
Q Consensus 141 ~la~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 202 (551)
.... .+...+ ++..-+.++ ...|.+.......+......|+.++|.....++.....
T Consensus 103 ~~~l~~La~~~-~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 103 SRFVNELARRE-DWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHHHHHHcc-CHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 1222 222345 666655532 23477777778888888999999888888777765543
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.59 E-value=19 Score=32.83 Aligned_cols=186 Identities=13% Similarity=0.173 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q psy12713 153 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLK 232 (551)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 232 (551)
-++|+..-.-...+.|..++++-.++.+..+..+...=...=-..+-+...+...| +.+-.+++..
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------------~r~lI~eg~a 277 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------------DRALIDEGLA 277 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------------hHHHHHHHHH
Confidence 45666666667777787777777666665543221100000000011111122222 2255677778
Q ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 233 EFRNFVDTH-SNVVEACTLFAQVLVD-----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
.+.++.... |.-....-.++.++.. .-+|..-...|.-.....|+ +.+-.|.+...-. ..-.+.++...+..
T Consensus 278 ll~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~-~~Gp~agLa~ve~L 355 (415)
T COG4941 278 LLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAM-REGPAAGLAMVEAL 355 (415)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHH-hhhHHhHHHHHHHh
Confidence 888877654 3333333334444432 33676666677766666665 4555566666333 45567777777766
Q ss_pred Hhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHH
Q psy12713 307 ISI--DKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIY 354 (551)
Q Consensus 307 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 354 (551)
... -......+...|.++.+.|+.++|...|++++.+.++..+-..+.
T Consensus 356 ~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 356 LARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 554 233455677899999999999999999999999998877754443
No 382
>KOG2114|consensus
Probab=88.44 E-value=26 Score=36.26 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
.+....|..++..|++++|...|-+.+.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3444555555566666666665555554
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.94 E-value=16 Score=34.94 Aligned_cols=64 Identities=14% Similarity=0.026 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
...+...+..++|..|...+..+...-|.+..+.....+..|..++..- ++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 4455566677777777777777776423322222223333455556666 777777777766554
No 384
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.93 E-value=5.2 Score=35.15 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHH-HhCCchHHHHHHHHHhhc
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYI-FTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~ 127 (551)
.++..|....+.|+|++.+.++++++..+|. ...+-...++.+|- ..|..-.+...+......
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e--Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE--LTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC--CCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 4677899999999999999999999999886 45566666666663 345555566666555443
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.70 E-value=1.7 Score=26.13 Aligned_cols=25 Identities=32% Similarity=0.191 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
+..|..|+..|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4456666666666666666666664
No 386
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.13 E-value=2.4 Score=33.50 Aligned_cols=56 Identities=21% Similarity=0.137 Sum_probs=44.9
Q ss_pred CchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhh
Q psy12713 481 NVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMA 536 (551)
Q Consensus 481 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 536 (551)
.-.+.....+.-.+..|++.-|.+....++..+|+|..++..++.++..+|...+.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 34667778888889999999999999999999999999999999999988765543
No 387
>KOG0546|consensus
Probab=86.84 E-value=1 Score=40.89 Aligned_cols=82 Identities=22% Similarity=0.192 Sum_probs=68.0
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhhhhhhhh
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTLAELMAFS 538 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 538 (551)
-...+.+..|+.....++..++....+++.+|..+....++++|++.++.+....|++......+..+-....+......
T Consensus 285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~ 364 (372)
T KOG0546|consen 285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQK 364 (372)
T ss_pred cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 34457788888888888888899999999999999999999999999999999999999888777777666555544444
Q ss_pred hh
Q psy12713 539 DE 540 (551)
Q Consensus 539 ~~ 540 (551)
..
T Consensus 365 ~~ 366 (372)
T KOG0546|consen 365 KA 366 (372)
T ss_pred HH
Confidence 33
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.88 E-value=1.9 Score=23.43 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=16.7
Q ss_pred cCHHHHHHHHHHHhhcCCchHHHHHHHH
Q psy12713 497 GQYEEALRNLDKTIALNPNFHVARAQRH 524 (551)
Q Consensus 497 g~~~~A~~~~~~al~~~p~~~~a~~~l~ 524 (551)
|+.+.|...|++++...|.++..|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455666666666666666666555443
No 389
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.88 E-value=7 Score=37.16 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhcCC-----CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 99 LARLLRATVYIFTSQSTKAIEDLTQLVEDTS-----VDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 99 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
.+...+.+++.-+|||..|++.++.+ +++. .-+...+..++..|-+|+.++ +|.+|++.|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlr-RY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLR-RYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45566777888899999999987653 2221 123334557777889999999 99999998887763
No 390
>PF12854 PPR_1: PPR repeat
Probab=85.65 E-value=2.5 Score=23.66 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy12713 313 CMFAYETLGTIEVQRGRLEEAVKCFNK 339 (551)
Q Consensus 313 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 339 (551)
+...|..+...+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 366788888888888888888888875
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.18 E-value=2.9 Score=33.04 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ 113 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 113 (551)
-++..+..|...+..|++.-|..+.+.++..+|+ +..+...++.++.++|.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~---n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPD---NEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999998 88888888888877664
No 392
>KOG0128|consensus
Probab=85.15 E-value=51 Score=34.26 Aligned_cols=394 Identities=14% Similarity=0.074 Sum_probs=212.1
Q ss_pred CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCHH
Q psy12713 112 SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL---FGQYE 188 (551)
Q Consensus 112 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~ 188 (551)
|.-+.=+..++.-+.+++.+ ...+..+..++...| ++++-...-..+..+.|..+..|.....-... .++..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~----~~~~v~Li~llrk~~-dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~ 167 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYK----YAQMVQLIGLLRKLG-DLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERK 167 (881)
T ss_pred ccchhHHHHHHHHhcccccc----hHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchh
Confidence 34445566666666666655 345555888888889 88888887788888888888887765543332 36777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChhHHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHhccC
Q psy12713 189 EALRNLDKTIALNPNFHVARAQRHFVVHKM-IVPGDRERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQED 260 (551)
Q Consensus 189 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~ 260 (551)
++...|++++.- -+....|...+...... ..+...++++.-...|.+++..-.. .+..+..+-..|...-.
T Consensus 168 ~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~ 246 (881)
T KOG0128|consen 168 EVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVE 246 (881)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHH
Confidence 888889998853 34555555555444433 4445568888889999998875322 23455566666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHH----HHHHH--HHHHHHhcCCHHHHHHHH-------HHHHhcCcCCHHHHHHHHHHHHHh
Q psy12713 261 FDGAEEYFNRSIRVDPENAS----LYVHR--AMLMLQARGNVDEAIKLI-------EKAISIDKSCMFAYETLGTIEVQR 327 (551)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~----~~~~l--~~~~~~~~~~~~~A~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~ 327 (551)
.++-+.++...+... -+.. .+... +..+.....+++.|..-+ ++.++..|.-...|..+-......
T Consensus 247 ~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 247 QRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS 325 (881)
T ss_pred HHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 677777777766654 2211 11111 122222245555555543 344444555566777788888889
Q ss_pred CCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHH-HHH-HHHHHhccccCCCcchhhhhHHHHHHHHHHhhchhhhcccc
Q psy12713 328 GRLEEAVKCFNKALPLARDEAELSHIYSLRDAAI-AQM-KVCERYNIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPA 405 (551)
Q Consensus 328 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (551)
|....-...+++++...+.+...|..++...... ... .............+....++.....++..-......+...-
T Consensus 326 G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l 405 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNL 405 (881)
T ss_pred CCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHH
Confidence 9998888899999888888777766654331100 000 00011111223334444444444444443332222111100
Q ss_pred C-CCCCcc--ccCcchhhHHHHhhhccCCccccCCCcch-hhhhhhhhcc--------chhhhch-hhhhcChhHHHHhh
Q psy12713 406 D-KGGKTV--VMDKADYTQKMTSILNSNDYEIIPGDPTK-TIEESEKYGN--------LENESGQ-KHAASDFTKAFADL 472 (551)
Q Consensus 406 ~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~-~~~~~~~~~A~~~~ 472 (551)
. .....+ +.+...|...-........++.....+.. +..+.+.++. +...+.. +...++.+.|..++
T Consensus 406 ~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iW 485 (881)
T KOG0128|consen 406 EKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIW 485 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 0 000000 00000011111111111111111111111 1111111211 1111111 23457777777777
Q ss_pred HHhhccCCCchH-HHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 473 DEAEKVDPNVAD-SYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 473 ~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
+..+...-.+.. .|+....+-...|+...|...+++|+..
T Consensus 486 n~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 486 NFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred hccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 777666544444 7777777788889999999988888764
No 393
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.67 E-value=19 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713 68 AKRAFEHEDYLTAIRHCTEEIESTS 92 (551)
Q Consensus 68 a~~~~~~g~~~~A~~~~~~~l~~~~ 92 (551)
-.-++..|+|+.|+.+..-+|+.+-
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCC
Confidence 3446789999999999999998763
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.67 E-value=2.2 Score=35.96 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=54.7
Q ss_pred hhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHH
Q psy12713 459 KHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHV 518 (551)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 518 (551)
+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 445578999999999999999999999999999999999999999999999999998743
No 395
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.48 E-value=5.1 Score=36.38 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy12713 156 AFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVV 215 (551)
Q Consensus 156 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 215 (551)
|..+|.+|+.+.|+++..+..+|.++...|+.-.|+-+|-+++-.....+.+..++....
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888866544555555555433
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.24 E-value=9.5 Score=32.39 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 293 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 293 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++......|.
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 566666666666666666666666666666666666666666666666666666555444443
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.05 E-value=13 Score=28.81 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Q psy12713 283 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPL 343 (551)
Q Consensus 283 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 343 (551)
..+|.-.+-.+|+-++-.+.+....+....+|+.+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3344444444777777777777776655566888888888888888888888888887654
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.90 E-value=3.6 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcCcCCHHHHHH
Q psy12713 296 VDEAIKLIEKAISIDKSCMFAYET 319 (551)
Q Consensus 296 ~~~A~~~~~~~~~~~~~~~~~~~~ 319 (551)
.+.|...|++++...|.++..|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444444444444433
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.84 E-value=32 Score=30.84 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=21.0
Q ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHH
Q psy12713 243 NVVEACTLFAQVLVDQEDFDGAEEYFN 269 (551)
Q Consensus 243 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 269 (551)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 468899999999999999988887764
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.78 E-value=5.2 Score=35.51 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 100 ARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA 163 (551)
Q Consensus 100 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~ 163 (551)
.+...+..|...|.+.+|+++.++++..+|-+.. .+..+-.++...| +--.+++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~----~nk~lm~~la~~g-D~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ----DNKGLMASLATLG-DEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHhc-cchhhhhHHHHH
Confidence 4445556666777777777777777777776644 3334666667777 666666655554
No 401
>PF12854 PPR_1: PPR repeat
Probab=83.68 E-value=3.4 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHhccCHHHHHHHHHH
Q psy12713 244 VVEACTLFAQVLVDQEDFDGAEEYFNR 270 (551)
Q Consensus 244 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 270 (551)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445667777777777777777777664
No 402
>KOG0686|consensus
Probab=82.62 E-value=9 Score=35.78 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C----C
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV----D----P 168 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~----~ 168 (551)
.-.++..+|.-|...|+++.|++.|.++-..-.. ..-.++.+.+...+-...| +|..-..+..++... . .
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~-nw~hv~sy~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMG-NWGHVLSYISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhc-chhhhhhHHHHHHhCchhhhhHHHh
Confidence 4678889999999999999999999996654433 3334677788888888888 887777777666655 1 1
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 169 NVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 169 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
-.+.+...-|.+....++|..|..+|-.+.
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112344445556666779999999887654
No 403
>KOG2581|consensus
Probab=81.53 E-value=48 Score=31.28 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=121.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcC-----CCC-------
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDT-----SVD------- 131 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~------- 131 (551)
..-......|-+..--.+..++++.-|.. ..+...++.+...++..|. ++..-+...+-.. |.+
T Consensus 35 ke~~~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~ 112 (493)
T KOG2581|consen 35 KEQLAQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQ 112 (493)
T ss_pred HHHHHHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCcccccccccc
Confidence 33444566676666666677777777754 2344555555555554443 4554444433211 100
Q ss_pred ---c----hhHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcC-CCC--------hhHHHHHHHHHHHhCCHHHHHHH
Q psy12713 132 ---P----KIKVNAHIKR--AVVHLHAASDFTKAFADLDEAEKVD-PNV--------ADSYYQRGQIYCLFGQYEEALRN 193 (551)
Q Consensus 132 ---~----~~~~~~~~~l--a~~~~~~~~~~~~A~~~~~~~~~~~-~~~--------~~~~~~la~~~~~~~~~~~A~~~ 193 (551)
. .....+|..+ ...++... ++.+|..+-+..+... -.+ +..|+.+..+|...|+...-...
T Consensus 113 ~a~~~k~~~~Ei~aY~~lLv~Lfl~d~K-~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~ 191 (493)
T KOG2581|consen 113 SALKRKPLPAEIEAYLYLLVLLFLIDQK-EYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSF 191 (493)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 0 0013344333 33344557 8999988877665431 111 45677888888888887766666
Q ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHh--CC--CcHHHHHHHHHHHHhccCHHHHHHH
Q psy12713 194 LDKTIALNP--NFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDT--HS--NVVEACTLFAQVLVDQEDFDGAEEY 267 (551)
Q Consensus 194 ~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~~~~~~A~~~ 267 (551)
+...+.... .+......+..+++ ..|...+.++.|.....+..-- .. ......+.+|.+..-+++|..|.++
T Consensus 192 l~~~lrtAtLrhd~e~qavLiN~LL--r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~ 269 (493)
T KOG2581|consen 192 LHALLRTATLRHDEEGQAVLINLLL--RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEY 269 (493)
T ss_pred HHHHHHHhhhcCcchhHHHHHHHHH--HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHH
Confidence 655554321 22222222333333 3344458888888777665411 11 2245677889999999999999999
Q ss_pred HHHHHhcCCCC
Q psy12713 268 FNRSIRVDPEN 278 (551)
Q Consensus 268 ~~~~~~~~~~~ 278 (551)
+-+++...|++
T Consensus 270 ~~qa~rkapq~ 280 (493)
T KOG2581|consen 270 FLQALRKAPQH 280 (493)
T ss_pred HHHHHHhCcch
Confidence 99999999975
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.74 E-value=3.8 Score=38.82 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--------cCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEK--------VDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
++..+.+++.-+| +|..|++.++..-- ..+-+...++..|-+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLG-DY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLG-DYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhcc-CHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788999999 99999998875311 1233466889999999999999999999998874
No 405
>KOG2063|consensus
Probab=80.73 E-value=84 Score=33.56 Aligned_cols=170 Identities=12% Similarity=0.004 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCChh------
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF--TKAFADLDEAEKVDPNVAD------ 172 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~------ 172 (551)
+..++..|...|+.++|++.+.+......+........+-.....+...+ .. +-..++-.=.+..+|....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~-~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLG-AENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc-ccchhHHHHHhhhhhccCchhheeeeecc
Confidence 56778888888888888888888877432111111222233333333444 33 4444444444444444311
Q ss_pred -------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHh-h-cCCChhHHHHHHHH--HHHHHH-
Q psy12713 173 -------SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFH-VARAQRHFVVHKM-I-VPGDRERVEQSLKE--FRNFVD- 239 (551)
Q Consensus 173 -------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~A~~~--~~~~~~- 239 (551)
.-.....-|......+-++.+++.++....... ..+..+...|... . .....++-+++.+. .++...
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 001112234556677778888888877655433 3333333333222 1 11222222333333 222211
Q ss_pred ------hCCCc-------HHHHHHHHHHHHhccCHHHHHHHHHHH
Q psy12713 240 ------THSNV-------VEACTLFAQVLVDQEDFDGAEEYFNRS 271 (551)
Q Consensus 240 ------~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~ 271 (551)
.+|+. ...|...+.++.+.|+.++|+..|-..
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11111 345566677777777777777665443
No 406
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.42 E-value=42 Score=29.87 Aligned_cols=130 Identities=10% Similarity=0.066 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHhcCCHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVD 297 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~ 297 (551)
-++.-+..+..+++.+|.+...|...-.++... .++..-....++.++.++.+..+|...-.+. .. ...+.
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k 167 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLK 167 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHH
Confidence 345556677888888898888888777776554 5677777788888888888877665444331 11 23344
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHH---HHHHHHhCC------HHHHHHHHHHhcccccCHHHHHHHHhH
Q psy12713 298 EAIKLIEKAISIDKSCMFAYETL---GTIEVQRGR------LEEAVKCFNKALPLARDEAELSHIYSL 356 (551)
Q Consensus 298 ~A~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~a~~~~~~~~~~~~~~~~ 356 (551)
.-.++-..++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|.....
T Consensus 168 ~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 168 HELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 44666667778888888888766 333333443 455566677777788888887766543
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.37 E-value=29 Score=31.07 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
...+..|...| .+.+|+++.++++..+|-+...+..+-.++..+|+--.+++.|++.-
T Consensus 283 gkva~~yle~g-~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAG-KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcC-ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34556667777 88888888888888888888888888888888888777777666543
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.98 E-value=80 Score=32.82 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 225 ERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 225 ~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
.+.+.|...+.+.....+-+. .++..+|.-....+...+|...+..+..... +....-......+. .++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~-~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALG-TGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHH-ccCHHHHH
Confidence 666788888877654443332 2344555444444336677777776654332 23333333334455 89999888
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 301 KLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
..+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888776444445678889999999999999999999999854
No 409
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.71 E-value=28 Score=27.46 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=7.2
Q ss_pred hcHHHHHHHHHHHhhcC
Q psy12713 75 EDYLTAIRHCTEEIEST 91 (551)
Q Consensus 75 g~~~~A~~~~~~~l~~~ 91 (551)
+.....+.+++.++..+
T Consensus 21 ~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 21 NLLEELIPYLESALKLN 37 (140)
T ss_pred CcHHHHHHHHHHHHccC
Confidence 33444444444444443
No 410
>PF13041 PPR_2: PPR repeat family
Probab=79.35 E-value=8.9 Score=23.64 Aligned_cols=30 Identities=7% Similarity=0.047 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
...|..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 455666666667777777777777776654
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.31 E-value=45 Score=29.61 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVE 126 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~ 126 (551)
.+.+..+++..|+..+|+.-+++=+.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455666677777777766665544
No 412
>KOG2114|consensus
Probab=78.81 E-value=89 Score=32.71 Aligned_cols=250 Identities=12% Similarity=0.067 Sum_probs=142.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHH
Q psy12713 67 KAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVH 146 (551)
Q Consensus 67 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 146 (551)
+-..++++.-|+-|+.+.+.- ..+++ ....++...|.-++..|++++|...|-+.+..-. +. . ...-+
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s---~----Vi~kf 407 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PS---E----VIKKF 407 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hH---H----HHHHh
Confidence 445667788899998776642 33333 4677888899999999999999999999887532 11 1 22334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhH
Q psy12713 147 LHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRER 226 (551)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (551)
.... +..+-..+++...+..-.+.+--..|-.+|.++++.++-.++.++ .+. ....+..-.+. .+..+.+-
T Consensus 408 Ldaq-~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~-g~~~fd~e~al---~Ilr~sny 478 (933)
T KOG2114|consen 408 LDAQ-RIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDK-GEWFFDVETAL---EILRKSNY 478 (933)
T ss_pred cCHH-HHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCC-cceeeeHHHHH---HHHHHhCh
Confidence 4555 566666777777776666666667788899999998776555443 331 11000000000 11111133
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 227 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEK 305 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~ 305 (551)
.++|.-...+. ..+.. .+-.++...|+|++|+.++... .|+. .......|..++. ..+++-...+-+
T Consensus 479 l~~a~~LA~k~----~~he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~--h~P~~t~~ili~ 546 (933)
T KOG2114|consen 479 LDEAELLATKF----KKHEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE--HDPEETMKILIE 546 (933)
T ss_pred HHHHHHHHHHh----ccCHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh--hChHHHHHHHHH
Confidence 33333332221 11221 2334556778899999887653 2222 2345556777544 667777766666
Q ss_pred HHhcCc--CCHHHH----HHHHHHHHHhCCHHHHHHHHHHhcccccCHHH
Q psy12713 306 AISIDK--SCMFAY----ETLGTIEVQRGRLEEAVKCFNKALPLARDEAE 349 (551)
Q Consensus 306 ~~~~~~--~~~~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 349 (551)
.+.... ...... ...-.+..-.+++..-..+++...+..|+.++
T Consensus 547 ~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 547 LITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 654321 111110 12223334456777777777767777776665
No 413
>PF13041 PPR_2: PPR repeat family
Probab=78.32 E-value=11 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
.|..+-..+.+.| ++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~-~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAG-KFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHHHc
Confidence 3444555666666 666666666666554
No 414
>KOG0276|consensus
Probab=76.76 E-value=25 Score=34.97 Aligned_cols=136 Identities=16% Similarity=0.095 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy12713 172 DSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLF 251 (551)
Q Consensus 172 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 251 (551)
+.....+..+..+|-.++|+ .+.++... .+ .+..+.|+++.|.+...++ ++..-|..+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL-------~~s~D~d~-rF---------elal~lgrl~iA~~la~e~-----~s~~Kw~~L 672 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQAL-------ELSTDPDQ-RF---------ELALKLGRLDIAFDLAVEA-----NSEVKWRQL 672 (794)
T ss_pred hhhhhHHhHhhhccchHhhh-------hcCCChhh-hh---------hhhhhcCcHHHHHHHHHhh-----cchHHHHHH
Confidence 34555667777777666654 44444322 22 2223348888888766543 556778999
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHH
Q psy12713 252 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLE 331 (551)
Q Consensus 252 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (551)
|......|++..|.++|.++.... . +-.++-. .|+-+--...-..+-+....+. --.+++..|+++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d~~-----~---LlLl~t~-~g~~~~l~~la~~~~~~g~~N~-----AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARDLG-----S---LLLLYTS-SGNAEGLAVLASLAKKQGKNNL-----AFLAYFLSGDYE 738 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcchh-----h---hhhhhhh-cCChhHHHHHHHHHHhhcccch-----HHHHHHHcCCHH
Confidence 999999999999999998875432 1 1112111 4443322222222222222221 124567788999
Q ss_pred HHHHHHHHhccc
Q psy12713 332 EAVKCFNKALPL 343 (551)
Q Consensus 332 ~A~~~~~~a~~~ 343 (551)
++.+.+...-++
T Consensus 739 ~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 739 ECLELLISTQRL 750 (794)
T ss_pred HHHHHHHhcCcC
Confidence 988888765443
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=76.52 E-value=52 Score=31.17 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHhCCchHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 104 RATVYIFTSQSTKAIEDLTQLVEDTSVD---PKIKVNAHIKRAVVHLHAASDFTKAFADLDE 162 (551)
Q Consensus 104 la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~ 162 (551)
.+..++..++|..|...|+.+....+.. ..+........|..++..- ++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF-EHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc-CHHHHHHHHhh
Confidence 4446788889999999998888775421 1122223334455566777 88899888875
No 416
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=76.19 E-value=0.84 Score=45.63 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHhhhcHHHHHHHHHHHh--hcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCch
Q psy12713 56 TNESHELDLLSKAKRAFEHEDYLTAIRHCTEEI--ESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPK 133 (551)
Q Consensus 56 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 133 (551)
++......++..+..++..|++..|..++.++- ...|. .........|.+....|+++.|+..+.. .....-...
T Consensus 19 ~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~--q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~~~~l~~~ 95 (536)
T PF04348_consen 19 SGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPS--QQARYQLLRARLALAQGDPEQALSLLNA-QDLWQLPPE 95 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChH--HHHHHHHHHHHHHHhcCCHHHHHHHhcc-CCcccCCHH
Confidence 344566777888999999999999999998776 22333 3566778889999999999999999875 222222233
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
.....+..++.++...| ++-+|...+-..-..
T Consensus 96 ~~~~~~~l~A~a~~~~~-~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 96 QQARYHQLRAQAYEQQG-DPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhh
Confidence 33445566888888888 888777765544433
No 417
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.28 E-value=12 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy12713 499 YEEALRNLDKTIALNPNFHVARAQRHFV 526 (551)
Q Consensus 499 ~~~A~~~~~~al~~~p~~~~a~~~l~~~ 526 (551)
|.+|++.+.+++...|+++.-...+..+
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3444455555556678887654444433
No 418
>KOG0546|consensus
Probab=74.86 E-value=7.8 Score=35.48 Aligned_cols=74 Identities=27% Similarity=0.307 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRH 212 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 212 (551)
...+++.+-...+ .+..|+..-..++..++....+++.++..+....++++|++.+..+....|++......+.
T Consensus 277 ~~~n~~~~~lk~~-~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 277 IRRNLAAVGLKVK-GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred cccchHHhccccc-CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 3344777778888 8888888877777778888888999999999999999999999999888888766554433
No 419
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=74.77 E-value=87 Score=30.51 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhC
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTS 112 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g 112 (551)
...-..|..++-.|||+-|...|+.+.+-...+ ...+.+.-..|.+.+..+
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~ 262 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQG 262 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcC
Confidence 344567899999999999999999877644321 233444445555555555
No 420
>KOG4151|consensus
Probab=74.51 E-value=15 Score=37.54 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHH--hCCchHHHHHHHHHhhcCCCCchhHHHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARLLRATVYIF--TSQSTKAIEDLTQLVEDTSVDPKIKVNAHIK 141 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 141 (551)
-..+...+..+++..|.--|..++...|.+ ...+......+.++.. .|++..++....-++...|.- ..+++.
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i----~~~Ll~ 132 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI----SKALLK 132 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH----HHHHhh
Confidence 344566667777777777777777777753 3334445555666554 457777777777777776654 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQ 179 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 179 (551)
.+.+|...+ .++-|++.+.-.....|.+..+......
T Consensus 133 r~~~y~al~-k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 133 RARKYEALN-KLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 777888887 7777777766666677777554443333
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.46 E-value=10 Score=32.12 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=46.1
Q ss_pred cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCch
Q psy12713 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNF 516 (551)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 516 (551)
+..+..++..++.++..| ++.++.+++.++...|+.++|....+++..+.|.+
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 345667777888888888 59999999999999999999999999999999943
No 422
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=74.14 E-value=82 Score=29.93 Aligned_cols=58 Identities=26% Similarity=0.176 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCCc--hhHHHHHH--HHHHHHHHhCCchHHHHHHHH
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSSN--HTKALARL--LRATVYIFTSQSTKAIEDLTQ 123 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~--~la~~~~~~g~~~~A~~~~~~ 123 (551)
.++..+++.++|..|...|.+++...++. ......+. ..|..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35668999999999999999999886532 11233344 445556678899999999986
No 423
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=73.71 E-value=6.3 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=13.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSI 272 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~ 272 (551)
|..+-..|.+.|++++|...+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3445555555566666665555544
No 424
>KOG4014|consensus
Probab=73.50 E-value=51 Score=27.28 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-CChh
Q psy12713 152 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCL-----FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVP-GDRE 225 (551)
Q Consensus 152 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (551)
++++|...|..--..+. .+...+.+|..+.. .++...|++.+..+.. .+.+.+-..++.++.....- ...-
T Consensus 50 nF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dp 126 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADP 126 (248)
T ss_pred HHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCC
Confidence 55555555554333221 23444444443322 3456666666666654 33444444444433322111 1112
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 226 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDEAIKLI 303 (551)
Q Consensus 226 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~ 303 (551)
+.++|..++.++... ++..+.+.+...++... ++ +....| ..+...-.++.+ ..+.+.|.++-
T Consensus 127 d~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~~~~~~~~~----~kDMdka~qfa 191 (248)
T KOG4014|consen 127 DSEKAERYMTRACDL--EDGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPLDRAELGSL----SKDMDKALQFA 191 (248)
T ss_pred CcHHHHHHHHHhccC--CCchHHHHHHHHHhccc--hh-------hcccCCCCCCCcchhhhhhh----hHhHHHHHHHH
Confidence 366777777776654 34455555555554332 11 111233 122222223332 56777888887
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHh----CCHHHHHHHHHHhcccc
Q psy12713 304 EKAISIDKSCMFAYETLGTIEVQR----GRLEEAVKCFNKALPLA 344 (551)
Q Consensus 304 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~a~~~~ 344 (551)
.++.+++ ++.+..++.+.|..- .+.++|..+-++|.++.
T Consensus 192 ~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 192 IKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred HHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 7777654 456666666666432 35677777777776654
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.35 E-value=4.7 Score=27.65 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=22.7
Q ss_pred hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhc
Q psy12713 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 512 (551)
.++|+.++++++..+ ..|++++|+..|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456666666665544 467888888888888764
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.30 E-value=67 Score=28.55 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcCC------HHHHHHHHHHHHHhCC
Q psy12713 262 DGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRGR 329 (551)
Q Consensus 262 ~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 329 (551)
...+..+.++....... ..+...+|..|+. .|++++|..+|+.+....... ..+...+..|+...|+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555442211 2345567777777 888888888888886543322 4566677788888888
Q ss_pred HHHHHHHHHH
Q psy12713 330 LEEAVKCFNK 339 (551)
Q Consensus 330 ~~~A~~~~~~ 339 (551)
.+..+...-+
T Consensus 234 ~~~~l~~~le 243 (247)
T PF11817_consen 234 VEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHH
Confidence 8777665443
No 427
>KOG0276|consensus
Probab=73.22 E-value=45 Score=33.30 Aligned_cols=100 Identities=17% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 70 RAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 70 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
.+...|+++.|...+- .-|. +.....+..+..+|-.++| +.+.++. .. .-.+..+.
T Consensus 595 t~vmrrd~~~a~~vLp----~I~k-----~~rt~va~Fle~~g~~e~A-------L~~s~D~-d~-------rFelal~l 650 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLP----TIPK-----EIRTKVAHFLESQGMKEQA-------LELSTDP-DQ-------RFELALKL 650 (794)
T ss_pred HHhhhccccccccccc----cCch-----hhhhhHHhHhhhccchHhh-------hhcCCCh-hh-------hhhhhhhc
Confidence 4555677777664322 2222 2334445555555544444 4444433 11 22355667
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 150 ASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
| +++.|.+...++ ++..-|..||......|++..|.+++.++..
T Consensus 651 g-rl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 651 G-RLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred C-cHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 7 788777655443 4556688888888888888888888887654
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=73.04 E-value=78 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 281 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 281 (551)
.+...|..+.+.|+.++|...|++++.+.++..+.
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 44455555666666666666666666555554443
No 429
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=72.45 E-value=99 Score=30.12 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCC-----HHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCcCCHH
Q psy12713 245 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPEN-----ASLYVHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMF 315 (551)
Q Consensus 245 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~-----~~~~~~l~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~ 315 (551)
..+....+.++...|.+.+|...+-+.... ..+. ...+-..+.++ .. ......-..-++ ....
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~-~~~~~~~~~r~R-------K~af 371 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLR-SNRPSPGLTRFR-------KYAF 371 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccc-cCCCCccchhhH-------HHHH
Confidence 456667777788888887777766655543 2121 22233333332 11 000000000000 1122
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhccccc
Q psy12713 316 AYETLGTIEVQRGRLEEAVKCFNKALPLAR 345 (551)
Q Consensus 316 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 345 (551)
-+..-|.-|.+.|+...|..+|.+++....
T Consensus 372 ~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 372 HMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 334456788899999999999999987754
No 430
>KOG4014|consensus
Probab=72.35 E-value=55 Score=27.12 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=97.2
Q ss_pred CCChhHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCcHH
Q psy12713 168 PNVADSYYQRGQIYCL-FGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNVVE 246 (551)
Q Consensus 168 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 246 (551)
...|+....||..+.. +.++++|...|..-..-+. .+..-+.+|..++.... ...+++..|+..+..+.. .+.+.
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKg-G~~~~l~~a~r~~~~aC~--~n~~~ 106 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKG-GDDASLSKAIRPMKIACD--ANIPQ 106 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccC-CCccCHHHHHHHHHHHhc--cCCHH
Confidence 4557788888876654 5678889888887655432 34444455543332211 445788999999988776 45677
Q ss_pred HHHHHHHHHHhc-----cC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC--CHHHH
Q psy12713 247 ACTLFAQVLVDQ-----ED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAY 317 (551)
Q Consensus 247 ~~~~la~~~~~~-----~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~ 317 (551)
+...+|.++..- ++ .++|.+++.++.... +..+.+.+...++. | .++ +....|. .+..
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~--g-~~k-------~~t~ap~~g~p~~- 173 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG--G-KEK-------FKTNAPGEGKPLD- 173 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc--c-chh-------hcccCCCCCCCcc-
Confidence 778888777642 23 678999999988664 45666666666443 3 222 2222342 1222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcccc
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKALPLA 344 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~ 344 (551)
.+..+.-..+.+.|..+--+|-++.
T Consensus 174 --~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 174 --RAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred --hhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 2333444567777777777776653
No 431
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=71.28 E-value=39 Score=25.78 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc------------hhHHHHHHHHHHHHHHhCCchHHHHHHHHH----hh
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN------------HTKALARLLRATVYIFTSQSTKAIEDLTQL----VE 126 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~ 126 (551)
.+...|...++.+++-.++-.|++++....+. ...+....++|..+..+|+.+-.+++++-+ +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 35567888888888888888888877543221 223445566777777777777777776543 34
Q ss_pred cCCCCchhHHH
Q psy12713 127 DTSVDPKIKVN 137 (551)
Q Consensus 127 ~~~~~~~~~~~ 137 (551)
+-|.-|.....
T Consensus 83 LiPQCp~~~C~ 93 (140)
T PF10952_consen 83 LIPQCPNTECE 93 (140)
T ss_pred hccCCCCcchH
Confidence 45554443333
No 432
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=70.88 E-value=12 Score=20.29 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 502 ALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 502 A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
.++.-.+++..+|.|..+|..+-.+...
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3456677788888888888877776654
No 433
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=69.97 E-value=26 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQ 113 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 113 (551)
.....+..|...+..||+..|.+...++-+..+. ..-.+..-+.+-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~---~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN---PLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCC
Confidence 3455566677777777777777777777655554 44444445555555443
No 434
>KOG4151|consensus
Probab=68.01 E-value=38 Score=34.87 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=75.0
Q ss_pred HHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q psy12713 105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAA-SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCL 183 (551)
Q Consensus 105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 183 (551)
|+..++.+++..+.--|..++.+.|.+.........+.+.++...| +++..++....-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 5666777777777777777777777555444445555666665543 278888888888888888888888888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHH
Q psy12713 184 FGQYEEALRNLDKTIALNPNFHVA 207 (551)
Q Consensus 184 ~~~~~~A~~~~~~~l~~~~~~~~~ 207 (551)
.+.++-|++...-.....|.+..+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Confidence 888888888877777777777433
No 435
>KOG4279|consensus
Probab=67.61 E-value=85 Score=32.39 Aligned_cols=181 Identities=11% Similarity=0.137 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHH---HhCCHHHHHHHHHHHHhcC-CCCHHH
Q psy12713 138 AHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV------ADSYYQRGQIYC---LFGQYEEALRNLDKTIALN-PNFHVA 207 (551)
Q Consensus 138 ~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~---~~~~~~~A~~~~~~~l~~~-~~~~~~ 207 (551)
.-.++-..|.... +|+.-++..+..-.+ |+. ..+.+..+-.+- +-|+-++|+...-.+++.. |-.++.
T Consensus 203 ~V~nlmlSyRDvQ-dY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQ-DYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHhhhcccc-chHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 3444666777777 888777777654433 322 111122222222 3577888888887777654 334444
Q ss_pred HHHHHHHHHHh---hcCCChhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCC-----CC
Q psy12713 208 RAQRHFVVHKM---IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRVDP-----EN 278 (551)
Q Consensus 208 ~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-----~~ 278 (551)
+...|.+|-.+ .-|.+.+..+.|+.+|+++++..|..... .+++.++...|+ ++...+.=.-...++. ..
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Confidence 44455554443 55677888899999999999988864322 233444444332 2322222221221110 00
Q ss_pred ---HHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Q psy12713 279 ---ASLY----VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 323 (551)
Q Consensus 279 ---~~~~----~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 323 (551)
...| +.++.. .- .+++.+|+..-+...++.|.....-..++.+
T Consensus 360 leklq~YWdV~~y~~as-VL-And~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEAS-VL-ANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHHHHHHhHHHhhhhh-hh-ccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 1111 122222 12 5788888888888888877644333334333
No 436
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=67.32 E-value=11 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
.+..++.+|..+-..|+|++|+.+|.+++
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34556666666666777777666666554
No 437
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=67.27 E-value=47 Score=31.99 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC
Q psy12713 60 HELDLLSKAKRAFEHEDYLTAIRHCTEEIESTS 92 (551)
Q Consensus 60 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~ 92 (551)
.....+..|..++..|+|.+|+..|+.+|..-|
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~ 235 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIP 235 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 556678899999999999999999999987643
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.31 E-value=20 Score=30.36 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCH
Q psy12713 297 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRGRLEEAVKCFNKALPLARDE 347 (551)
Q Consensus 297 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 347 (551)
+..++..++.+...|+ +.++..++.++...|+.++|.....++....|.+
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3444555666666674 7788888888888888888888888888888843
No 439
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=66.01 E-value=15 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
|..+-..+.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445555666666666666655443
No 440
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.77 E-value=83 Score=26.68 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=56.9
Q ss_pred ccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHhCCHHH
Q psy12713 258 QEDFDGAEEYFNRSIRV-DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS----CMFAYETLGTIEVQRGRLEE 332 (551)
Q Consensus 258 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 332 (551)
.-.-+.|...|-++-.. .-+++...+.+|.. +. ..+.++++..+.++++..+. +++.+..|+.++.++|+++.
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATY-YT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 33445677777655432 12457788888876 44 68999999999999987543 48999999999999999998
Q ss_pred HHH
Q psy12713 333 AVK 335 (551)
Q Consensus 333 A~~ 335 (551)
|--
T Consensus 197 AYi 199 (203)
T PF11207_consen 197 AYI 199 (203)
T ss_pred hhh
Confidence 853
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=65.32 E-value=36 Score=22.36 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-hhHHHHHH--HHHHHHHHhCCchHHHHH
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSN-HTKALARL--LRATVYIFTSQSTKAIED 120 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~--~la~~~~~~g~~~~A~~~ 120 (551)
+..|..++..|+|=+|-+.++.+-...+.. ......+. ..|....+.|+..-|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456777777888888888877777655432 11122222 223334455666665543
No 442
>KOG1497|consensus
Probab=64.81 E-value=1.1e+02 Score=27.91 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh--cCCCCchh
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIEDLTQLVE--DTSVDPKI 134 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 134 (551)
...+.+|..|-..++|..|-..+.-+ ..+... ......+..+|..|...++..+|..+..++-- .+..|+..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 34456677777777777776555422 222110 23344555666666666666666666655422 22234444
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 135 KVNAHIKRAVVHLHAASDFTKAFADLDE 162 (551)
Q Consensus 135 ~~~~~~~la~~~~~~~~~~~~A~~~~~~ 162 (551)
....-...|+++-..+ +|-+|-..|.+
T Consensus 183 qie~kvc~ARvlD~kr-kFlEAAqrYye 209 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKR-KFLEAAQRYYE 209 (399)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4333333444444555 55555444443
No 443
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=64.79 E-value=67 Score=25.27 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=29.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy12713 145 VHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLD 195 (551)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 195 (551)
.+...+ .....+.+++.++..++.++..+..+..+|... +..+.+..++
T Consensus 16 ~~~~~~-~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRN-LLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCC-cHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344456 677777777777777666666666666666543 2333344433
No 444
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.62 E-value=12 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEE 87 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~ 87 (551)
+..+..+|..+-..|++.+|+.+|+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555566665555555543
No 445
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=63.29 E-value=15 Score=20.40 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=20.7
Q ss_pred HHHhhhhhHHHHh----cCHHHHHHHHHHHhhc
Q psy12713 484 DSYYQRGQIYCLF----GQYEEALRNLDKTIAL 512 (551)
Q Consensus 484 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~ 512 (551)
.+.+.+|.+|..- .+.++|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567777777642 3788888888888764
No 446
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=60.83 E-value=1e+02 Score=26.12 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=23.7
Q ss_pred hhHHHHhhHHhhccCC--CchHHHhhhhhHHHHhc
Q psy12713 465 FTKAFADLDEAEKVDP--NVADSYYQRGQIYCLFG 497 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g 497 (551)
+++.++-.++.+-.-| ++++.|+..|.|+.-..
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~A 192 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIA 192 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 5666666666665555 68899999999987654
No 447
>KOG4521|consensus
Probab=59.93 E-value=2.8e+02 Score=30.72 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 127 (551)
.....+.+|.+|...|...+|+.+|.++..-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 4456677788888888888888888887664
No 448
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=59.78 E-value=26 Score=18.98 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=15.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 248 CTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 248 ~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
|..+...+.+.|+++.|...++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666655443
No 449
>KOG4521|consensus
Probab=58.94 E-value=2.9e+02 Score=30.60 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------------HHHHh--hcCCChhH
Q psy12713 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHF----------------------VVHKM--IVPGDRER 226 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~ 226 (551)
+...+.+|.+|...|+..+|+.+|.++..-..... ++..+.. -||.. .++..-+-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 34567788888889999999999988875432211 1111110 01110 33334456
Q ss_pred HHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCCHHH-
Q psy12713 227 VEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGNVDE- 298 (551)
Q Consensus 227 ~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~- 298 (551)
.+.+++....+++.-|++ +-....+-.-+...|.+-+|...+ -.+|+.. ..+..+..++++ .|.++.
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfe-cg~l~~L 1073 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFE-CGELEAL 1073 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHh-ccchHHH
Confidence 666666666777655444 334445555667778888776643 3355532 244455555455 555432
Q ss_pred -----------HHH-HHHHHHhcCcCC-HHHHHHHHHHHHHhCCHHHHH-HHHHHhccccc
Q psy12713 299 -----------AIK-LIEKAISIDKSC-MFAYETLGTIEVQRGRLEEAV-KCFNKALPLAR 345 (551)
Q Consensus 299 -----------A~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~ 345 (551)
-.. .++.+-...|-. ...|..|--.+...+++.+|- -.|+.+..+..
T Consensus 1074 ~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1074 ATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred hhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 233 333333333332 345555666677788887765 45666666543
No 450
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=58.91 E-value=19 Score=20.41 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred hHHHhhhh--hHHHHhc-----CHHHHHHHHHHHhhc
Q psy12713 483 ADSYYQRG--QIYCLFG-----QYEEALRNLDKTIAL 512 (551)
Q Consensus 483 ~~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~~ 512 (551)
+.+.+.+| .++..-. +.++|+.+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35667777 4443322 578888888888764
No 451
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.21 E-value=17 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
+..+..+|..+-..|+|++|+.+|..+++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44556666666667777777766666543
No 452
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.01 E-value=19 Score=25.07 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHH
Q psy12713 185 GQYEEALRNLDKTI 198 (551)
Q Consensus 185 ~~~~~A~~~~~~~l 198 (551)
|+.++|+.+|++++
T Consensus 22 g~~e~Al~~Y~~gi 35 (79)
T cd02679 22 GDKEQALAHYRKGL 35 (79)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554444
No 453
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.93 E-value=20 Score=24.14 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
.+...|...-..|++++|+.+|.+++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555556666666666555544
No 454
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.58 E-value=42 Score=22.53 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=12.8
Q ss_pred hhHHHHhcCHHHHHHHHHHHhh
Q psy12713 490 GQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 490 g~~~~~~g~~~~A~~~~~~al~ 511 (551)
|.-....|++++|+.+|.++++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334446666666666666654
No 455
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.43 E-value=1.7e+02 Score=27.16 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCchHHHHHHHHH
Q psy12713 102 LLRATVYIFTSQSTKAIEDLTQL 124 (551)
Q Consensus 102 ~~la~~~~~~g~~~~A~~~~~~~ 124 (551)
..-|.+++..|+|.+....+..+
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHH
Confidence 34577788888887776666554
No 456
>KOG2561|consensus
Probab=55.95 E-value=2e+02 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.027 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh
Q psy12713 247 ACTLFAQVLVDQEDFDGAEEYFNRSIR 273 (551)
Q Consensus 247 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 273 (551)
.+..-|.+.+.+|+-++|.++++.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455668888899999999999888754
No 457
>KOG4322|consensus
Probab=55.20 E-value=2e+02 Score=27.67 Aligned_cols=106 Identities=13% Similarity=-0.034 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCC--CCch
Q psy12713 59 SHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN---HTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTS--VDPK 133 (551)
Q Consensus 59 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~ 133 (551)
..++..++.|..+....++..|...+.++.-..... .....++..++.++.+.+..-.+..+.-.++.... ..+.
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldy 350 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDY 350 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccch
Confidence 356677777777777777777777777765443321 22344455555555555544444444333332210 1111
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12713 134 IKVNAHIKRAVVHLHAASDFTKAFADLDEAEK 165 (551)
Q Consensus 134 ~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~ 165 (551)
....+-..++..+...| ..++|+..+..++.
T Consensus 351 l~a~~~L~LAl~~L~LG-~pk~Al~lLh~a~h 381 (482)
T KOG4322|consen 351 LEANENLDLALEHLALG-SPKAALPLLHTAVH 381 (482)
T ss_pred hhhhchHHHHHHHHHcC-ChHHHHHHHHhhhh
Confidence 11223344666666666 66667666666653
No 458
>KOG4322|consensus
Probab=54.00 E-value=2.1e+02 Score=27.54 Aligned_cols=102 Identities=12% Similarity=-0.031 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAEKV----DPNV 170 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~----~~~~ 170 (551)
.++..+..+.++....++..|...++++.-. .+.+......++..++.++.+.+ ....+..+.-.++.. .-+.
T Consensus 272 svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~-~a~l~lplaL~~~~~~sey~ldy 350 (482)
T KOG4322|consen 272 SVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGD-TACLNLPLALMFEFKRSEYSLDY 350 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHHHhccch
Confidence 5677777888888888888888888887653 34455555566666777776666 555554444433322 2111
Q ss_pred --hhHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy12713 171 --ADSYYQRGQIYCLFGQYEEALRNLDKTIA 199 (551)
Q Consensus 171 --~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 199 (551)
...-..++......|..+.|...+..++.
T Consensus 351 l~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h 381 (482)
T KOG4322|consen 351 LEANENLDLALEHLALGSPKAALPLLHTAVH 381 (482)
T ss_pred hhhhchHHHHHHHHHcCChHHHHHHHHhhhh
Confidence 33445667777778888888888887764
No 459
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.64 E-value=13 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=18.5
Q ss_pred hhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 465 FTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
..+|+..+.++++.+. .|+|++|..+|..+++
T Consensus 3 l~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHH
Confidence 3456666666655542 3666666666665554
No 460
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.44 E-value=36 Score=26.09 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHh
Q psy12713 318 ETLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYS 355 (551)
Q Consensus 318 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 355 (551)
..+|..+...|++++|..+|-+|+...|+-.++...+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45788888889999999999999999888877666554
No 461
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=53.23 E-value=81 Score=24.17 Aligned_cols=61 Identities=15% Similarity=-0.024 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhcCCCC-----c------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12713 101 RLLRATVYIFTSQSTKAIEDLTQLVEDTSVD-----P------KIKVNAHIKRAVVHLHAASDFTKAFADLDE 162 (551)
Q Consensus 101 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~------~~~~~~~~~la~~~~~~~~~~~~A~~~~~~ 162 (551)
+..+|...++.+++-.++-.|++|+.+..+- . ...+.+..++|..+...| +.+-.+++++-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g-d~~yELkYLql 75 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG-DSDYELKYLQL 75 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC-ChHHHHHHHHH
Confidence 4567788888888888888888887653211 0 111223445555555566 55555555543
No 462
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=52.20 E-value=20 Score=33.70 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=34.9
Q ss_pred ChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcC------------HHHHHHHHHHHhhc
Q psy12713 464 DFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQ------------YEEALRNLDKTIAL 512 (551)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~ 512 (551)
-...|++++++|.. .++|+.|..+|.++..+|+ |.+|...+.+|-..
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 37788899988876 4578888888888888886 66777777777554
No 463
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=52.08 E-value=1e+02 Score=28.35 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVE 126 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 126 (551)
..+.+......|..+...|..+.|+..++..+...++........+.++.++...|.++-|...+....+
T Consensus 209 ~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 209 EESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 464
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.99 E-value=1.1e+02 Score=23.89 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHH---------------HHHHHH--HhCCchHHHHHHHHHhhc
Q psy12713 65 LSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLL---------------RATVYI--FTSQSTKAIEDLTQLVED 127 (551)
Q Consensus 65 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~---------------la~~~~--~~g~~~~A~~~~~~~~~~ 127 (551)
+..|....-.|..++..++..+.+...+-...+...... +|.++- .-|+....+.++-..-.
T Consensus 6 LmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 6 LMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-
Confidence 456778888999999999999998877742111111111 111100 11222222222222110
Q ss_pred CCCCchhHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 128 TSVDPKIKVNAHIKRAVV-HLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 128 ~~~~~~~~~~~~~~la~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
. .-|..+|.- ...+| +-++--+.+....+....+|..+..+|..|.+.|+..+|-+.+.++.+.
T Consensus 85 --~------se~vD~ALd~lv~~~-kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 --L------SEYVDLALDILVKQG-KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------HHHHHHHHHHHHTT--HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --h------HHHHHHHHHHHHHhc-cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 0 112224433 34455 6666666666666555667888888899999999988888888888764
No 465
>KOG2561|consensus
Probab=51.76 E-value=2.3e+02 Score=27.34 Aligned_cols=49 Identities=29% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHH-----------hhcCCCchhHHHHHHHHHHHHHHhCCc
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEE-----------IESTSSNHTKALARLLRATVYIFTSQS 114 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~-----------l~~~~~~~~~~~~~~~la~~~~~~g~~ 114 (551)
-+..+|..++....|++|+.++-.+ ++...+ .+..-..+.+||+.+.+.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN---yallnLDIVWCYfrLkni 224 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN---YALLNLDIVWCYFRLKNI 224 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc---hhhhhcchhheehhhccc
Confidence 3567888999999999998876554 333232 444555677888877654
No 466
>KOG0889|consensus
Probab=51.75 E-value=6.2e+02 Score=32.30 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=35.5
Q ss_pred chHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy12713 482 VADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTS 529 (551)
Q Consensus 482 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 529 (551)
.++.+...|....++|+.++|-..|..|++++-.-+.+|..-|.-..+
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 466777778888888888888888888888877777777766655544
No 467
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.05 E-value=58 Score=28.36 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=17.9
Q ss_pred HhcCHHHHHHHHHHHhhcCCchH
Q psy12713 495 LFGQYEEALRNLDKTIALNPNFH 517 (551)
Q Consensus 495 ~~g~~~~A~~~~~~al~~~p~~~ 517 (551)
..++...|+.++++|++++|+..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 34577889999999999988753
No 468
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.49 E-value=27 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.280 Sum_probs=12.0
Q ss_pred HHhcCHHHHHHHHHHHhhc
Q psy12713 494 CLFGQYEEALRNLDKTIAL 512 (551)
Q Consensus 494 ~~~g~~~~A~~~~~~al~~ 512 (551)
...|+|++|+.+|..+++.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3456777777766666653
No 469
>KOG0686|consensus
Probab=49.94 E-value=2.4e+02 Score=27.00 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----C----CC
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV---ADSYYQRGQIYCLFGQYEEALRNLDKTIALN----P----NF 204 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----~----~~ 204 (551)
-.++..+|.-|...| +++.|++.|.++-...... ...+.++-.+-..+|+|..-..+..++...- . -.
T Consensus 150 Rra~~Dl~dhy~~cG-~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCG-QLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 457778999999999 9999999999976654333 5677788888888999988777777776541 0 01
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHH-HhccCHH---HHHHHHHHHH
Q psy12713 205 HVARAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVL-VDQEDFD---GAEEYFNRSI 272 (551)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~-~~~~~~~---~A~~~~~~~~ 272 (551)
+...-.-|.+.+.. +++..|..+|-.+.... |.+..+|..+.-+. +...++. ..-..|+..+
T Consensus 229 ~kl~C~agLa~L~l------kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fl 302 (466)
T KOG0686|consen 229 AKLKCAAGLANLLL------KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFL 302 (466)
T ss_pred cchHHHHHHHHHHH------HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHH
Confidence 22333444445555 89999999998776533 44555554433221 1222222 1224566666
Q ss_pred hcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 273 RVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI 307 (551)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 307 (551)
+..|. .+..++.. + .++|...++.+.+.-
T Consensus 303 el~Pq---lr~il~~f-y--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 303 ELEPQ---LREILFKF-Y--SSKYASCLELLREIK 331 (466)
T ss_pred hcChH---HHHHHHHH-h--hhhHHHHHHHHHHhc
Confidence 66654 34344443 2 578888888887753
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.87 E-value=30 Score=23.83 Aligned_cols=28 Identities=29% Similarity=0.173 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
-.++.+|...-..|+|++|+.+|..+++
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 3344555555556666666666665544
No 471
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=49.20 E-value=5.6 Score=39.93 Aligned_cols=102 Identities=24% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HhcCCC-ChhH
Q psy12713 97 KALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEA--EKVDPN-VADS 173 (551)
Q Consensus 97 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~ 173 (551)
....++.-+..+...|++..|...+.++-.. +-++.......+..+.+....| +++.|+..+... ..+.+. ....
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~-~L~~~q~~~~~Ll~A~lal~~~-~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQ-QLSPSQQARYQLLRARLALAQG-DPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccc-cCChHHHHHHHHHHHHHHHhcC-CHHHHHHHhccCCcccCCHHHHHHH
Confidence 5566777788899999999999999877621 1112223445566888999999 999999998741 112121 2445
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy12713 174 YYQRGQIYCLFGQYEEALRNLDKTIAL 200 (551)
Q Consensus 174 ~~~la~~~~~~~~~~~A~~~~~~~l~~ 200 (551)
+..++.++...|++-+|...+-.+-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 667888999999988888766554443
No 472
>KOG4279|consensus
Probab=48.71 E-value=1.1e+02 Score=31.66 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=37.3
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHh---------CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFT---------SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAV 144 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 144 (551)
.||-++|+...-.+++.... ..++.+..-|.+|-.. +..+.|++.|+++++..|... +=++++.
T Consensus 256 ~GDRakAL~~~l~lve~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-----sGIN~at 328 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGP--VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-----SGINLAT 328 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCC--CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-----ccccHHH
Confidence 46666676666666654322 2444555555555322 334556777777777766431 1133555
Q ss_pred HHHHhc
Q psy12713 145 VHLHAA 150 (551)
Q Consensus 145 ~~~~~~ 150 (551)
.+...|
T Consensus 329 LL~aaG 334 (1226)
T KOG4279|consen 329 LLRAAG 334 (1226)
T ss_pred HHHHhh
Confidence 555555
No 473
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.13 E-value=32 Score=19.02 Aligned_cols=26 Identities=8% Similarity=-0.060 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q psy12713 76 DYLTAIRHCTEEIESTSSNHTKALARLLRA 105 (551)
Q Consensus 76 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la 105 (551)
.++.|..+|++.+...| .+..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp----~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP----EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC----CchHHHHHH
Confidence 45667777777777666 344444443
No 474
>KOG0889|consensus
Probab=47.84 E-value=7.1e+02 Score=31.85 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcC--CCChhHH
Q psy12713 98 ALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDFTKAFADLDEAE-KVD--PNVADSY 174 (551)
Q Consensus 98 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~~ 174 (551)
+++....|.+..+.|-++.++..+.+...+..-.......-+..-+.||....+....+++..+..- ... ...++.+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 4444555666667777777777777766653221111111122233344333213444444443221 111 1225677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCh---hHHHHHHHHHHHHHHhC
Q psy12713 175 YQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVVHKMIVPGDR---ERVEQSLKEFRNFVDTH 241 (551)
Q Consensus 175 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~ 241 (551)
...|....+.|+.++|-..|..|++++..-+.+|..-|...... ..... .--..|+.+|-++....
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~-f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR-FNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccCcccHHHHHHHHHHHHHhccc
Confidence 88899999999999999999999999888888888877665543 11111 23345666666665543
No 475
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.23 E-value=1.8e+02 Score=28.14 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=17.5
Q ss_pred hcCCHHHHHHHHHHHHhcCcCC
Q psy12713 292 ARGNVDEAIKLIEKAISIDKSC 313 (551)
Q Consensus 292 ~~~~~~~A~~~~~~~~~~~~~~ 313 (551)
+.++|..|..+.++.+++.|..
T Consensus 312 K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 312 KLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CTTBHHHHHHHHHHHHCT--SC
T ss_pred HhccHHHHHHHHHHHHHcCCCH
Confidence 3899999999999999998864
No 476
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.07 E-value=2.1e+02 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKV 166 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~ 166 (551)
+|.+..+.+ +|++.+.+..+++..
T Consensus 7 ~Aklaeq~e-Ryddm~~~mk~~~~~ 30 (244)
T smart00101 7 MAKLAEQAE-RYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHhh
Confidence 444444555 555555555555543
No 477
>PRK12798 chemotaxis protein; Reviewed
Probab=47.01 E-value=2.7e+02 Score=26.80 Aligned_cols=193 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CCCChhHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHH
Q psy12713 142 RAVVHLHAASDFTKAFADLDEAEKV-DPNVADSYYQRG-QIYCLFGQYEEALRNLDKTIALNPNFHV--ARAQRHFVVHK 217 (551)
Q Consensus 142 la~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~ 217 (551)
-|..-+-.| +-.++...+...-.. .|.....+..|. -..+...+..+|+..|+.+--..|.... +-.....
T Consensus 118 ~g~laY~~G-r~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi---- 192 (421)
T PRK12798 118 DGALAYLSG-RGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL---- 192 (421)
T ss_pred HHHHHHHcC-CHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh----
Confidence 566666777 888888877665332 122233333333 3344567888899999988888887422 2111111
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCC-HHHHHHHHHHHHHh
Q psy12713 218 MIVPGDRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPEN-ASLYVHRAMLMLQA 292 (551)
Q Consensus 218 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~ 292 (551)
.+..+.|+.++...+-.+.+..+..++. .+-.++....+.++-.. ...+...+.. +|.. ..+|..++..-+.
T Consensus 193 -~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali- 269 (421)
T PRK12798 193 -FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALI- 269 (421)
T ss_pred -HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHH-
Confidence 2223348888888888888877766653 33334444444442222 2234444443 4443 4577777877676
Q ss_pred cCCHHHHHHHHHHHHhcCcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Q psy12713 293 RGNVDEAIKLIEKAISIDKS----CMFAYETLGTIEVQRGRLEEAVKCFNKALP 342 (551)
Q Consensus 293 ~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 342 (551)
.|+.+-|.-.-++++.+... ...+....+-.-.-..+.++|.+.+...-.
T Consensus 270 ~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 270 DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 89999999999998877532 244555555555566778888888776543
No 478
>KOG0687|consensus
Probab=46.38 E-value=2.4e+02 Score=26.05 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhc--CCCCchhHHHHH
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVED--TSVDPKIKVNAH 139 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 139 (551)
+++..+|..+.+-||-+.|.+.+.+..+..-......++.+.+...-+--++.+-.-+..+++-.+ ...+.+-....-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYC 182 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 182 (551)
...|...+... ++.+|-..|-.++.......-.-+.-...|.
T Consensus 185 vY~Gly~msvR-~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Yt 226 (393)
T KOG0687|consen 185 VYQGLYCMSVR-NFKEAADLFLDSVSTFTSYELMSYETFVRYT 226 (393)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHcccccceecccHHHHHHHH
No 479
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.17 E-value=1.8e+02 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=19.5
Q ss_pred HHHHHHhCCchHHHHHHHHHhhcCCCCchh
Q psy12713 105 ATVYIFTSQSTKAIEDLTQLVEDTSVDPKI 134 (551)
Q Consensus 105 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 134 (551)
..++.+.|.+++|.+.+++... +|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 3456777777777777777777 5555443
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.98 E-value=2.1e+02 Score=26.67 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCC
Q psy12713 64 LLSKAKRAFEHEDY-LTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSV 130 (551)
Q Consensus 64 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 130 (551)
-|.....++..|-. ++....+..++..-|+....+..|..+|.+.-..|.++..+.+|++|+.....
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 34444444555543 24555555555555544444555666666666666666666666666655433
No 481
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=45.12 E-value=38 Score=23.26 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 61 ELDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 61 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
+..++.+|...-..|+|++|+.+|.+++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666665544
No 482
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.06 E-value=1.9e+02 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccccc--CHHHHHHHHhHHHHHHH
Q psy12713 330 LEEAVKCFNKALPLAR--DEAELSHIYSLRDAAIA 362 (551)
Q Consensus 330 ~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~ 362 (551)
+++..+-++..+-..| ++++++.+++.+....+
T Consensus 158 ~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~A 192 (199)
T PF04090_consen 158 YQQLIERIDELVLSPPYMDDGELWFIRGMCHLWIA 192 (199)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 5555555555555544 56778888777754443
No 483
>KOG2063|consensus
Probab=44.57 E-value=4.4e+02 Score=28.54 Aligned_cols=121 Identities=5% Similarity=-0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCCc--hHHHHHHHHHhhcCCCCchhH---
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIESTS-SNHTKALARLLRATVYIFTSQS--TKAIEDLTQLVEDTSVDPKIK--- 135 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~--- 135 (551)
..+..++..|...|+.++|++++.+...... .+....+.+-..-..+-..+.- +-..++-.-.++.+|......
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 4466778899999999999999999988442 1111333444444444455554 556666666666665432100
Q ss_pred -----HHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHH
Q psy12713 136 -----VNAH-IKRAVVHLHAASDFTKAFADLDEAEKVDPNV-ADSYYQRGQIYCL 183 (551)
Q Consensus 136 -----~~~~-~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~ 183 (551)
.... -....-+.... ..+-++.+++.++..+... ...+..+...|..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~-~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSK-EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhh-CcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 0000 11233456677 8889999999998876553 3444444444443
No 484
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.03 E-value=2.2e+02 Score=24.89 Aligned_cols=117 Identities=10% Similarity=-0.059 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhcHH-----HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHH
Q psy12713 65 LSKAKRAFEHEDYL-----TAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAH 139 (551)
Q Consensus 65 ~~~a~~~~~~g~~~-----~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 139 (551)
-..+..++-.-|++ .+..-|.....+.+. ......|.-+...+++++|+..+... ...|..+ ..
T Consensus 45 ~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~-----~~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~~---~~-- 113 (226)
T PF13934_consen 45 KKHSLFYYLLLDLDDTRPSELAESFARAFGIPPK-----YIKFIQGFWLLDHGDFEEALELLSHP-SLIPWFP---DK-- 113 (226)
T ss_pred HhHHHHHHHHHhcCccccccHHHHHHHHhCCCHH-----HHHHHHHHHHhChHhHHHHHHHhCCC-CCCcccH---HH--
Confidence 44455555444444 245555555555442 34445565666667777777776332 1112221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy12713 140 IKRAVVHLHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKT 197 (551)
Q Consensus 140 ~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 197 (551)
+..++...| +.+.|+.+++.. .-.....+.......+ ...+...+|..+-+..
T Consensus 114 --Il~~L~~~~-~~~lAL~y~~~~-~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 114 --ILQALLRRG-DPKLALRYLRAV-GPPLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred --HHHHHHHCC-ChhHHHHHHHhc-CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 455555567 777777776642 2233333333333333 5556666666655543
No 485
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.00 E-value=79 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=18.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhhcCCC
Q psy12713 66 SKAKRAFEHEDYLTAIRHCTEEIESTSS 93 (551)
Q Consensus 66 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~ 93 (551)
..|..++..|++++|..+|-+++...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4566666667777777777777776664
No 486
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.97 E-value=1e+02 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=7.4
Q ss_pred hHHHHhhHHhhccC
Q psy12713 466 TKAFADLDEAEKVD 479 (551)
Q Consensus 466 ~~A~~~~~~al~~~ 479 (551)
..|+.+..+|++.+
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 487
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.40 E-value=97 Score=23.18 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=29.6
Q ss_pred HHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q psy12713 485 SYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTSTL 531 (551)
Q Consensus 485 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 531 (551)
.....|.+-...||++.|.+...++-+..+..+..+..-+.+-...|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34456677777888888888888887765555555544444443333
No 488
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=42.02 E-value=49 Score=22.78 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhh
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEIE 89 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 89 (551)
..++.+|...-..|+|++|+.+|..+++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556555666666666666655543
No 489
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=2.7e+02 Score=25.27 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CHHH---HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHhCCCc
Q psy12713 171 ADSYYQRGQIYCLFGQYEEALRNLDKTIALNPN---FHVA---RAQRHFVVHKMIVPGDRERVEQSLKEFRNFVDTHSNV 244 (551)
Q Consensus 171 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 244 (551)
.+++.++|..|.+.++.+.+.+++.+.+...-. ..+. ...+| .+|..+.-.++.++.....++...+-
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg------~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG------LIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH------HhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 567888888888888888888877776653211 1111 12233 44555566666666666666654332
Q ss_pred H---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q psy12713 245 V---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 277 (551)
Q Consensus 245 ~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (551)
. ..-...|...+...++.+|-..+...+.....
T Consensus 189 eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 189 ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 1 22334566667777888888888777765443
No 490
>KOG4563|consensus
Probab=41.84 E-value=51 Score=30.59 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCcchHHHHHHHHHHHhhhcHHHHHHHHHHHhhcCCCc-----hhHHHHHHHHHHHHHHhCCchHHHHH
Q psy12713 57 NESHELDLLSKAKRAFEHEDYLTAIRHCTEEIESTSSN-----HTKALARLLRATVYIFTSQSTKAIED 120 (551)
Q Consensus 57 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~ 120 (551)
.+..+..++..|+..+.+++++.|...|..+....... ....++++..|.+++..++.....-.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567889999999999999999999999988664321 23678888899999888877665443
No 491
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.76 E-value=53 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHh
Q psy12713 62 LDLLSKAKRAFEHEDYLTAIRHCTEEI 88 (551)
Q Consensus 62 ~~~~~~a~~~~~~g~~~~A~~~~~~~l 88 (551)
..++.+|...-..|+|++|..+|..++
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555666666666555544
No 492
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.72 E-value=2.6e+02 Score=28.45 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=36.8
Q ss_pred hhcHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy12713 74 HEDYLTAIRHCTEEIESTSSNHTKALARLLRATVYIFTSQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHAASDF 153 (551)
Q Consensus 74 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 153 (551)
....+++....+.-+..... .+...+..+..+-..|+.+.|-.+|++.+..+|++ +++..+..+...| -.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~ 90 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEAL---TSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE------ARYEYARRLYNTG-LA 90 (578)
T ss_pred HhhHHHHHHHHHHhCCccch---hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc------hHHHHHHHHHhhh-hh
Confidence 33444444444443333332 44444445555555555555555555555555543 2233455555555 44
Q ss_pred HHHHHHHH
Q psy12713 154 TKAFADLD 161 (551)
Q Consensus 154 ~~A~~~~~ 161 (551)
..|...+.
T Consensus 91 ~~~~~~~~ 98 (578)
T PRK15490 91 KDAQLILK 98 (578)
T ss_pred hHHHHHHH
Confidence 44444444
No 493
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.44 E-value=2.5e+02 Score=28.63 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12713 224 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI 303 (551)
Q Consensus 224 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 303 (551)
....+.+....+.-+..........+..+..+-..+..+.|-.+|++.+..+|+ ..++..+..+.. .|-...|...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 97 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLIL 97 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHH
Confidence 355666666666655555555666777788888888999999999999988888 556666776555 78888888877
Q ss_pred H
Q psy12713 304 E 304 (551)
Q Consensus 304 ~ 304 (551)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 7
No 494
>KOG1497|consensus
Probab=40.84 E-value=3e+02 Score=25.44 Aligned_cols=99 Identities=8% Similarity=0.038 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAEKVDPNV--------ADSYYQRGQIYCLFGQYEEALRNLDKTIA--LNPNFH 205 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~~~~~ 205 (551)
......+|.+|...+ ++..|-..+.-. ..+... ...+..+|.+|...++..+|..+..++-- .+..+.
T Consensus 103 ~~irl~LAsiYE~Eq-~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQ-NWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 445567899999999 999998877633 222211 34577889999999999999988887643 234566
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy12713 206 VARAQRHFVVHKMIVPGDRERVEQSLKEFRNFV 238 (551)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 238 (551)
......-.|+. .+....+++-+|-+.|.+..
T Consensus 181 ~Lqie~kvc~A--RvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 181 QLQIEYKVCYA--RVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 65555554444 33444466666666665543
No 495
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.62 E-value=41 Score=23.47 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=23.0
Q ss_pred cChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhh
Q psy12713 463 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIA 511 (551)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 511 (551)
+.|++|....++++..+. .|+.++|+.+|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 347788888888777664 3566666666666654
No 496
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.41 E-value=2.6e+02 Score=24.76 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=39.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc-CC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12713 249 TLFAQVLVDQEDFDGAEEYFNRSIRV-DP--ENASLYVHRAMLMLQARGNVDEAIKLIEKA 306 (551)
Q Consensus 249 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 306 (551)
..+|.+..+.++|++.+.+.+++++. +| -+.+-...+..+|=...|....+...+...
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 45677788888999999998888876 43 334455555655444466677777776653
No 497
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.21 E-value=47 Score=22.84 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHH
Q psy12713 63 DLLSKAKRAFEHEDYLTAIRHCTEE 87 (551)
Q Consensus 63 ~~~~~a~~~~~~g~~~~A~~~~~~~ 87 (551)
.++.+|...-..|++++|+.+|.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a 34 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKA 34 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555444
No 498
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.14 E-value=2.9e+02 Score=25.10 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12713 136 VNAHIKRAVVHLHAASDFTKAFADLDEAE 164 (551)
Q Consensus 136 ~~~~~~la~~~~~~~~~~~~A~~~~~~~~ 164 (551)
..++.++|..|.+.+ +.+.+.+.+.+.+
T Consensus 115 ~ea~~n~aeyY~qi~-D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIM-DIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHh-hhhhHHHHHHHHH
Confidence 344455555555555 5555554444443
No 499
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.08 E-value=1.8e+02 Score=22.61 Aligned_cols=117 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCC---CchhHHHHHHHHHHHHHHh----CCchHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHh
Q psy12713 77 YLTAIRHCTEEIESTS---SNHTKALARLLRATVYIFT----SQSTKAIEDLTQLVEDTSVDPKIKVNAHIKRAVVHLHA 149 (551)
Q Consensus 77 ~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 149 (551)
.++-...|+..+.... + ..+.|.....-.... |.-..-...+++++....+++......-+....+.+..
T Consensus 1 ~~~~r~~~e~~i~~~~~~dD---PL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~ 77 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDD---PLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD 77 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS----CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccCCCC---ChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12713 150 ASDFTKAFADLDEAEKVDPNV--ADSYYQRGQIYCLFGQYEEALRNLDKTI 198 (551)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l 198 (551)
- .+.+...|..+....-.. +..|...|..+...|++.+|.+.|+.++
T Consensus 78 ~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 L--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred H--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 500
>KOG1920|consensus
Probab=39.66 E-value=5.8e+02 Score=28.51 Aligned_cols=261 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----hcCCCh
Q psy12713 151 SDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFG--QYEEALRNLDKTIALNPNFHVARAQRHFVVHKM----IVPGDR 224 (551)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~ 224 (551)
++.+.-.+..+.++...+.+ .....+-..|.+.+ ..+.|+....+... .+....+-..+-.+++.. ..-..+
T Consensus 771 ~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~-~~~~~~ad~al~hll~Lvdvn~lfn~AL 848 (1265)
T KOG1920|consen 771 NKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL-AQVAVSADEALKHLLFLVDVNELFNSAL 848 (1265)
T ss_pred hHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh-cccchhHHHHHHHHHhhccHHHHHHhhh
Q ss_pred hHHHHHHHHH-HHHHHhCCCcHHHHHHHHH---HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12713 225 ERVEQSLKEF-RNFVDTHSNVVEACTLFAQ---VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 300 (551)
Q Consensus 225 ~~~~~A~~~~-~~~~~~~~~~~~~~~~la~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 300 (551)
|-|+.-+..+ -+.-+.+|...-.+.+--. ...+.=+.+.-+.-|..|+..-......++.-..-|.++.|-|.+|+
T Consensus 849 gtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 849 GTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred cccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhh
Q ss_pred HHHHHHHhcCcCCHHHHH----------HHHHHHHHhCCHHHHHHHHHHhcccccCHHHHHHHHhHHHHHHHHHHHHHHh
Q psy12713 301 KLIEKAISIDKSCMFAYE----------TLGTIEVQRGRLEEAVKCFNKALPLARDEAELSHIYSLRDAAIAQMKVCERY 370 (551)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~----------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (551)
.++.--.+....-..+|. .-|..|...|+.++|++.|+.+
T Consensus 929 ~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~------------------------------ 978 (1265)
T KOG1920|consen 929 ALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKEC------------------------------ 978 (1265)
T ss_pred heeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHh------------------------------
Q ss_pred ccccCCCcchhhhhHHHHHHHHHHhhchhhhccccCCCCCccccCcchhhHHHHhhhccCCccccCCCcchhhhhhhhhc
Q psy12713 371 NIKKKVSPRSQNITKNEKLAIKQLRENNDIIIRPADKGGKTVVMDKADYTQKMTSILNSNDYEIIPGDPTKTIEESEKYG 450 (551)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (551)
T Consensus 979 -------------------------------------------------------------------------------- 978 (1265)
T KOG1920|consen 979 -------------------------------------------------------------------------------- 978 (1265)
T ss_pred --------------------------------------------------------------------------------
Q ss_pred cchhhhchhhhhcChhHHHHhhHHhhccCCCchHHHhhhhhHHHHhcCHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q psy12713 451 NLENESGQKHAASDFTKAFADLDEAEKVDPNVADSYYQRGQIYCLFGQYEEALRNLDKTIALNPNFHVARAQRHFVWTST 530 (551)
Q Consensus 451 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 530 (551)
|++.+|+....+.-.-.......-..+..-+..++++-+|-+.....++ +|.-..+.+--|..|...
T Consensus 979 ------------~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 979 ------------GDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DPEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred ------------ccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CHHHHHHHHhhHhHHHHH
Q ss_pred hhhhhh
Q psy12713 531 LAELMA 536 (551)
Q Consensus 531 ~~~~~a 536 (551)
.+....
T Consensus 1046 lrva~~ 1051 (1265)
T KOG1920|consen 1046 LRVASK 1051 (1265)
T ss_pred HHHHHh
Done!